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Izumi M, Nakamura S, Otomo K, Ishida H, Hidema J, Nemoto T, Hagihara S. Autophagosome development and chloroplast segmentation occur synchronously for piecemeal degradation of chloroplasts. eLife 2024; 12:RP93232. [PMID: 39509463 PMCID: PMC11542923 DOI: 10.7554/elife.93232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2024] Open
Abstract
Plants distribute many nutrients to chloroplasts during leaf development and maturation. When leaves senesce or experience sugar starvation, the autophagy machinery degrades chloroplast proteins to facilitate efficient nutrient reuse. Here, we report on the intracellular dynamics of an autophagy pathway responsible for piecemeal degradation of chloroplast components. Through live-cell monitoring of chloroplast morphology, we observed the formation of chloroplast budding structures in sugar-starved leaves. These buds were then released and incorporated into the vacuolar lumen as an autophagic cargo termed a Rubisco-containing body. The budding structures did not accumulate in mutants of core autophagy machinery, suggesting that autophagosome creation is required for forming chloroplast buds. Simultaneous tracking of chloroplast morphology and autophagosome development revealed that the isolation membranes of autophagosomes interact closely with part of the chloroplast surface before forming chloroplast buds. Chloroplasts then protrude at the site associated with the isolation membranes, which divide synchronously with autophagosome maturation. This autophagy-related division does not require DYNAMIN-RELATED PROTEIN 5B, which constitutes the division ring for chloroplast proliferation in growing leaves. An unidentified division machinery may thus fragment chloroplasts for degradation in coordination with the development of the chloroplast-associated isolation membrane.
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Affiliation(s)
- Masanori Izumi
- Frontier Research Institute for Interdisciplinary Sciences (FRIS), Tohoku UniversitySendaiJapan
- Center for Sustainable Resource Science (CSRS), RIKENWakoJapan
| | - Sakuya Nakamura
- Center for Sustainable Resource Science (CSRS), RIKENWakoJapan
| | - Kohei Otomo
- Exploratory Research Center on Life and Living Systems (ExCELLs), National Institutes of Natural SciencesOkazakiJapan
- National Institute for Physiological Sciences, National Institutes of Natural SciencesOkazakiJapan
- The Graduate University for Advanced Studies, SOKENDAIOkazakiJapan
- Research Institute for Electronic Science, Hokkaido UniversitySapporoJapan
- Graduate School of Medicine, Juntendo UniversityTokyoJapan
| | - Hiroyuki Ishida
- Graduate School of Agricultural Science, Tohoku UniversitySendaiJapan
| | - Jun Hidema
- Graduate School of Life Sciences, Tohoku UniversitySendaiJapan
| | - Tomomi Nemoto
- Exploratory Research Center on Life and Living Systems (ExCELLs), National Institutes of Natural SciencesOkazakiJapan
- National Institute for Physiological Sciences, National Institutes of Natural SciencesOkazakiJapan
- The Graduate University for Advanced Studies, SOKENDAIOkazakiJapan
- Research Institute for Electronic Science, Hokkaido UniversitySapporoJapan
| | - Shinya Hagihara
- Center for Sustainable Resource Science (CSRS), RIKENWakoJapan
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Lu J, Yu J, Liu P, Gu J, Chen Y, Zhang T, Li J, Wang T, Yang W, Lin R, Wang F, Qi M, Li T, Liu Y. Ubiquitin-mediated degradation of SlPsbS regulates low night temperature tolerance in tomatoes. Cell Rep 2024; 43:114757. [PMID: 39302836 DOI: 10.1016/j.celrep.2024.114757] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 07/26/2024] [Accepted: 08/29/2024] [Indexed: 09/22/2024] Open
Abstract
PsbS protein is essential for the rapid induction of non-photochemical quenching (NPQ) under low night temperatures (LNTs), but its stability is often affected by adverse environmental conditions. However, the regulatory mechanism for the stability of PsbS or chloroplast proteins remains to be fully characterized. We show that LNT decreases NPQ levels and SlPsbS protein abundance in tomato leaves. LNT-activated chloroplast vesicles (SlCVs) targeting the chloroplasts induce the formation of CV-containing vesicles (CCVs) containing SlPsbS, exported from the chloroplasts. Subsequently, SlCV and SlPsbS contact COP9 signalosome subunit 5A (SlCSN5A) in the cytosol and are ubiquitinated and degraded. Genetic evidence demonstrates that the overexpression of SlCV aggravates SlPsbS protein degradation, whereas silencing of SlCSN5 and SlCV delays LNT-induced NPQ reduction and SlPsbS protein turnover. This study reveals a ubiquitin-dependent degradation pathway of chloroplast proteins co-mediated by CV and CSN5A, thereby providing a basic reference for the regulation of chloroplast protein stability under stress conditions.
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Affiliation(s)
- Jiazhi Lu
- The Modern Facilities Horticultural Engineering Technology Center, Shenyang Agricultural University, Shenyang 110866, China; The Key Laboratory of Protected Horticulture, Ministry of Education, Shenyang 110866, China; Yazhouwan National Laboratory, Sanya 572024, China
| | - Junchi Yu
- Key Laboratory of Agriculture Biotechnology, College of Biosciences and Biotechnology, Shenyang Agricultural University, Shenyang 110866, China
| | - Pengkun Liu
- The Modern Facilities Horticultural Engineering Technology Center, Shenyang Agricultural University, Shenyang 110866, China; The Key Laboratory of Protected Horticulture, Ministry of Education, Shenyang 110866, China
| | - Jiamao Gu
- The Modern Facilities Horticultural Engineering Technology Center, Shenyang Agricultural University, Shenyang 110866, China; The Key Laboratory of Protected Horticulture, Ministry of Education, Shenyang 110866, China
| | - Yu Chen
- The Modern Facilities Horticultural Engineering Technology Center, Shenyang Agricultural University, Shenyang 110866, China; The Key Laboratory of Protected Horticulture, Ministry of Education, Shenyang 110866, China
| | - Tianyi Zhang
- The Modern Facilities Horticultural Engineering Technology Center, Shenyang Agricultural University, Shenyang 110866, China; The Key Laboratory of Protected Horticulture, Ministry of Education, Shenyang 110866, China
| | - Jialong Li
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Taotao Wang
- Key Laboratory of Horticulture Plant Biology, Ministry of Education, Huazhong Agriculture University, Wuhan 430070, China
| | - Wenqiang Yang
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Rongcheng Lin
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Feng Wang
- The Modern Facilities Horticultural Engineering Technology Center, Shenyang Agricultural University, Shenyang 110866, China; The Key Laboratory of Protected Horticulture, Ministry of Education, Shenyang 110866, China
| | - Mingfang Qi
- The Modern Facilities Horticultural Engineering Technology Center, Shenyang Agricultural University, Shenyang 110866, China; The Key Laboratory of Protected Horticulture, Ministry of Education, Shenyang 110866, China
| | - Tianlai Li
- The Modern Facilities Horticultural Engineering Technology Center, Shenyang Agricultural University, Shenyang 110866, China; The Key Laboratory of Protected Horticulture, Ministry of Education, Shenyang 110866, China.
| | - Yufeng Liu
- The Modern Facilities Horticultural Engineering Technology Center, Shenyang Agricultural University, Shenyang 110866, China; The Key Laboratory of Protected Horticulture, Ministry of Education, Shenyang 110866, China.
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Otegui MS, Steelheart C, Ma W, Ma J, Kang BH, De Medina Hernandez VS, Dagdas Y, Gao C, Goto-Yamada S, Oikawa K, Nishimura M. Vacuolar degradation of plant organelles. THE PLANT CELL 2024; 36:3036-3056. [PMID: 38657116 PMCID: PMC11371181 DOI: 10.1093/plcell/koae128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 03/21/2024] [Accepted: 03/21/2024] [Indexed: 04/26/2024]
Abstract
Plants continuously remodel and degrade their organelles due to damage from their metabolic activities and environmental stressors, as well as an integral part of their cell differentiation programs. Whereas certain organelles use local hydrolytic enzymes for limited remodeling, most of the pathways that control the partial or complete dismantling of organelles rely on vacuolar degradation. Specifically, selective autophagic pathways play a crucial role in recognizing and sorting plant organelle cargo for vacuolar clearance, especially under cellular stress conditions induced by factors like heat, drought, and damaging light. In these short reviews, we discuss the mechanisms that control the vacuolar degradation of chloroplasts, mitochondria, endoplasmic reticulum, Golgi, and peroxisomes, with an emphasis on autophagy, recently discovered selective autophagy receptors for plant organelles, and crosstalk with other catabolic pathways.
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Affiliation(s)
- Marisa S Otegui
- Department of Botany and Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI 53706, USA
| | - Charlotte Steelheart
- Department of Botany and Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI 53706, USA
| | - Wenlong Ma
- School of Life Sciences, Centre for Cell and Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China
| | - Juncai Ma
- School of Life Sciences, Centre for Cell and Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China
| | - Byung-Ho Kang
- School of Life Sciences, Centre for Cell and Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China
| | | | - Yasin Dagdas
- Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna BioCenter (VBC), Vienna 1030, Austria
| | - Caiji Gao
- Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou 510631, China
| | - Shino Goto-Yamada
- Malopolska Centre of Biotechnology, Jagiellonian University, Krakow 30-348, Poland
| | - Kazusato Oikawa
- Division of Symbiotic Systems, National Institute for Basic Biology, Okazaki 444-8585, Japan
| | - Mikio Nishimura
- Faculty of Science and Engineering, Konan University, Kobe 658-8501, Japan
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Tamizhselvan P, Madhavan S, Constan-Aguilar C, Elrefaay ER, Liu J, Pěnčík A, Novák O, Cairó A, Hrtyan M, Geisler M, Tognetti VB. Chloroplast Auxin Efflux Mediated by ABCB28 and ABCB29 Fine-Tunes Salt and Drought Stress Responses in Arabidopsis. PLANTS (BASEL, SWITZERLAND) 2023; 13:7. [PMID: 38202315 PMCID: PMC10780339 DOI: 10.3390/plants13010007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2023] [Revised: 11/26/2023] [Accepted: 12/13/2023] [Indexed: 01/12/2024]
Abstract
Photosynthesis is among the first processes negatively affected by environmental cues and its performance directly determines plant cell fitness and ultimately crop yield. Primarily sites of photosynthesis, chloroplasts are unique sites also for the biosynthesis of precursors of the growth regulator auxin and for sensing environmental stress, but their role in intracellular auxin homeostasis, vital for plant growth and survival in changing environments, remains poorly understood. Here, we identified two ATP-binding cassette (ABC) subfamily B transporters, ABCB28 and ABCB29, which export auxin across the chloroplast envelope to the cytosol in a concerted action in vivo. Moreover, we provide evidence for an auxin biosynthesis pathway in Arabidopsis thaliana chloroplasts. The overexpression of ABCB28 and ABCB29 influenced stomatal regulation and resulted in significantly improved water use efficiency and survival rates during salt and drought stresses. Our results suggest that chloroplast auxin production and transport contribute to stomata regulation for conserving water upon salt stress. ABCB28 and ABCB29 integrate photosynthesis and auxin signals and as such hold great potential to improve the adaptation potential of crops to environmental cues.
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Affiliation(s)
- Prashanth Tamizhselvan
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic; (P.T.); (S.M.); (C.C.-A.); (E.R.E.); (A.C.); (M.H.)
| | - Sharmila Madhavan
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic; (P.T.); (S.M.); (C.C.-A.); (E.R.E.); (A.C.); (M.H.)
| | - Christian Constan-Aguilar
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic; (P.T.); (S.M.); (C.C.-A.); (E.R.E.); (A.C.); (M.H.)
| | - Eman Ryad Elrefaay
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic; (P.T.); (S.M.); (C.C.-A.); (E.R.E.); (A.C.); (M.H.)
| | - Jie Liu
- Department of Biology, University of Fribourg, CH-1700 Fribourg, Switzerland; (J.L.); (M.G.)
| | - Aleš Pěnčík
- Laboratory of Growth Regulators, Institute of Experimental Botany, The Czech Academy of Sciences, & Faculty of Science, Palacký University, Šlechtitelů 27, CZ-783 71 Olomouc, Czech Republic; (A.P.); (O.N.)
| | - Ondřej Novák
- Laboratory of Growth Regulators, Institute of Experimental Botany, The Czech Academy of Sciences, & Faculty of Science, Palacký University, Šlechtitelů 27, CZ-783 71 Olomouc, Czech Republic; (A.P.); (O.N.)
| | - Albert Cairó
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic; (P.T.); (S.M.); (C.C.-A.); (E.R.E.); (A.C.); (M.H.)
| | - Mónika Hrtyan
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic; (P.T.); (S.M.); (C.C.-A.); (E.R.E.); (A.C.); (M.H.)
| | - Markus Geisler
- Department of Biology, University of Fribourg, CH-1700 Fribourg, Switzerland; (J.L.); (M.G.)
| | - Vanesa Beatriz Tognetti
- Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic; (P.T.); (S.M.); (C.C.-A.); (E.R.E.); (A.C.); (M.H.)
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