Activated carbon stimulates microbial diversity and PAH biodegradation under anaerobic conditions in oil-polluted sediments

Thin-layer capping with granular activated carbon and calcium-silicate to remediate organic and metal polluted harbor sediment - A mesocosm study

Sediments polluted with hydrophobic organic contaminants (HOCs) and metals can pose environmental risks, yet effective remediation remains a challenge. We investigated a new composite sorbent comprising granular activated carbon (GAC) and a calcium-silicate (Polonite®, PO) for thin-layer capping of polluted sediment, with the aim to sequester both HOCs and metals. Box cores were collected in polluted Oskarshamn harbor, Sweden, and the sediments were treated with GAC and/or Polonite in a 10-week mesocosm study to measure endpoints ranging from contaminant immobilization to ecological side effects on native fauna and biogeochemical processes. The GAC particle size was 300-500 μm to reduce negative effects on benthic fauna (by being non-ingestible) and of biogenic origin (coconut) to have a small carbon footprint compared with traditional fossil ACs. The calcium-silicate was a fine-grained industrial by-product used to target metals and as a carrier for GAC to improve the cap integrity. GAC decreased the uptake of dioxins (PCDD/Fs) in the bivalve Macoma balthica by 47 % and the in vitro bioavailability of PCB by 40 %. The composite cap of GAC + Polonite decreased sediment-to-water release of Pb < Cu < Ni < Zn < Cd by 42-98 % (lowest to highest decrease) and bioaccumulation of Cd < Zn < Cu in the worm Hediste diversicolor by 50-65 %. Additionally, in vitro bioavailability of Pb < Cu < Zn, measured using digestive fluid extraction, decreased by 43-83 %. GAC showed no adverse effects on benthic fauna while Polonite caused short-term adverse effects on fauna diversity and abundance, partly due to its cohesiveness, which, in turn, can improve the cap integrity in situ. Fauna later recovered and bioturbated the cap. Both sorbents influenced biogeochemical processes; GAC sorbed ammonium, Polonite decreased respiration, and both sorbents reduced denitrification. In conclusion, the side effects were relatively mild, and the cap decreased the release and bioavailability of both HOCs and metals effectively, thus offering a promising sustainable and cost-effective solution to remediating polluted sediments.

Enhanced phenanthrene biodegradation in river sediments by harnessing calcium peroxide nanoparticles and minerals in Sphingomonas sp. DSM 7526 cultivation

Coupling chemical oxidation and biodegradation to remediate polycyclic aromatic hydrocarbon (PAH)-contaminated sediment has recently gained significant attention. In this study, calcium peroxide nanoparticles (nCaO2) were utilized as an innovative oxygen-releasing compound for in-situ chemical oxidation. The study investigates the bioremediation of phenanthrene (PHE)-contaminated sediment inoculated with Sphingomonas sp. DSM 7526 bacteria and treated with either aeration or nCaO2. Using three different culture media, the biodegradation efficiencies of PHE-contaminated anoxic sediment, aerobic sediment, and sediment treated with 0.2% w/w nCaO2 ranged from 57.45% to 63.52%, 69.87% to 71.00%, and 92.80% to 94.67%, respectively. These values were significantly higher compared to those observed in non-inoculated sediments. Additionally, the type of culture medium had a prominent effect on the amount of PHE removal. The presence of minerals in the culture medium increased the percentage of PHE removal compared to distilled water by about 2-10%. On the other hand, although the application of CaO2 nanoparticles negatively impacted the abundance of sediment bacteria, resulting in a 30-42% decrease in colony-forming units after 30 days of treatment, the highest PHE removal was obtained when coupling biodegradation and chemical oxidation. These findings demonstrate the successful application of bioaugmentation and chemical oxidation processes for treating PAH-contaminated sediment.

Linking microbial slime community structure with abiotic factors and antifouling strategy in hydroelectric cooling systems

Microfouling can have significant economic impacts for hydroelectric power plants. However, knowledge concerning the composition and metabolism of microbial biofilm in cooling systems remains scarce. We examined the metagenome present in a cooling system, comprising a filter (F) and heat exchanger (HE), in the Nova Ponte hydroelectric power plant in Brazil, to identify bacteria and pathways that could be targeted to monitor and control biofilm formation. Our data revealed that the microfouling sample from heat exchanger 1 (HEM1), with porous consistency, presented enriched bacterial members not frequently described as biofilm formers in cooling systems, besides it has been shown to be an autoinducer repression pathway. Furthermore, the microfouling sample from heat exchanger 2 (HEM2), with gelatinous consistency, seemed to be an established biofilm, containing enriched bacterial groups such as Desulfotomaculum and Crenothrix and autoinducers, with biotechnological relevance in industrial biofilms. The results demonstrate that biofilm composition will vary depending on different abiotic conditions and the antifouling strategy used, including type of compound, concentration, and frequency of use. Therefore, all these variables must be evaluated when a power plant is affected by microbial slime in the cooling system. Our findings could help to define strategies for efficient and ecofriendly measures to contain microfouling in power plants.

Predicting and improving the microbial removal of organic micropollutants during wastewater treatment: A review

Organic micropollutants (OMPs) consist of widely used chemicals such as pharmaceuticals and pesticides that can persist in surface and groundwaters at low concentrations (ng/L to μg/L) for a long time. The presence of OMPs in water can disrupt aquatic ecosystems and threaten the quality of drinking water sources. Wastewater treatment plants (WWTPs) rely on microorganisms to remove major nutrients from water, but their effectiveness at removing OMPs varies. Low removal efficiency might be the result of low concentrations, inherent stable chemical structures of OMPs, or suboptimal conditions in WWTPs. In this review, we discuss these factors, with special emphasis on the ongoing adaptation of microorganisms to degrade OMPs. Finally, recommendations are drawn to improve the prediction of OMP removal in WWTPs and to optimize the design of new microbial treatment strategies. OMP removal seems to be concentration-, compound-, and process-dependent, which poses a great complexity to develop accurate prediction models and effective microbial processes targeting all OMPs.

Enhancing the Anaerobic Biodegradation of Petroleum Hydrocarbons in Soils with Electrically Conductive Materials

Anaerobic bioremediation is a relevant process in the management of sites contaminated by petroleum hydrocarbons. Recently, interspecies electron transfer processes mediated by conductive minerals or particles have been proposed as mechanisms through which microbial species within a community share reducing equivalents to drive the syntrophic degradation of organic substrates, including hydrocarbons. Here, a microcosm study was set up to investigate the effect of different electrically conductive materials (ECMs) in enhancing the anaerobic biodegradation of hydrocarbons in historically contaminated soil. The results of a comprehensive suite of chemical and microbiological analyses evidenced that supplementing the soil with (5% w/w) magnetite nanoparticles or biochar particles is an effective strategy to accelerate the removal of selected hydrocarbons. In particular, in microcosms supplemented with ECMs, the removal of total petroleum hydrocarbons was enhanced by up to 50% relative to unamended controls. However, chemical analyses suggested that only a partial bioconversion of contaminants occurred and that longer treatment times would have probably been required to drive the biodegradation process to completion. On the other hand, biomolecular analyses confirmed the presence of several microorganisms and functional genes likely involved in hydrocarbon degradation. Furthermore, the selective enrichment of known electroactive bacteria (i.e., Geobacter and Geothrix) in microcosms amended with ECMs, clearly pointed to a possible role of DIET (Diet Interspecies Electron Transfer) processes in the observed removal of contaminants.

Contaminant pulse following wildfire is associated with shifts in estuarine benthic communities

Novel combinations of climatic conditions due to climate change and prolonged fire seasons have contributed to an increased occurrence of "megafires". Such large-scale fires pose an unknown threat to biodiversity due to the increased extent and severity of burn. Assessments of wildfires often focus on terrestrial ecosystems and effects on aquatic habitats are less documented, particularly in coastal environments. In a novel application of eDNA techniques, we assessed the impacts of the 2019-2020 Australian wildfires on the diversity of estuarine benthic sediment communities in six estuaries in NSW, Australia, before and after the fires. Estuaries differed in area of catchment burnt (0-92%) and amount of vegetative buffer that remained post-fire between burnt areas and waterways. We found greater dissimilarities in the composition and abundance of eukaryotic and bacterial sediment communities in estuaries from burnt catchments with no buffer compared to those with an intact buffer or from unburnt catchments. Shifts in composition in highly burnt catchments were associated with increased concentrations of nutrients, carbon, including fire-derived pyrogenic carbon, and copper, which was representative of multiple highly correlated trace metals. Changes in the relative abundances of certain taxonomic groups, such as sulfate-reducing and nitrifying bacterial groups, in the most impacted estuaries indicate potential consequences for the functioning of sediment communities. These results provide a unique demonstration of the use of eDNA to identify wildfire impacts on ecological communities and emphasize the importance of vegetative buffers in limiting wildfire-associated impacts.

Phytoremediation of crude oil-contaminated sediment using Suaeda heteroptera enhanced by Nereis succinea and oil-degrading bacteria

A 150-day experiment was performed to investigate the stimulatory effect of a promising phytoremediation strategy consisting of Suaeda heteroptera (S. heteroptera), Nereis succinea (N. succinea), and oil-degrading bacteria for cleaning up total petroleum hydrocarbons (TPHs) in spiked sediment. Inoculation with oil-degrading bacteria and/or N. succinea increased plant yield and TPH accumulation in S. heteroptera plants. The highest TPH dissipation (40.5%) was obtained in the combination treatment, i.e., S. heteroptera + oil-degrading bacteria + N. succinea, in which the sediment TPH concentration decreased from an initial value of 3955 to 2355 mg/kg in 150 days. BAF, BCF, and TF confirmed the role of N. succinea and oil-degrading bacteria in the amelioration and translocation of TPHs. In addition, TPH toxicity of S. heteroptera was alleviated by N. succinea and oil-degrading bacteria addition through the reduction of oxidative stress. Therefore, S. heteroptera could be used for cleaning up oil-contaminated sediment, particularly in the presence of oil-degrading bacteria + N. succinea. Field studies on oil-degrading bacteria + N. succinea may provide new insights on the rehabilitation and restoration of sediments contaminated by TPHs.

Effects of phthalate esters on soil microbial community under different planting patterns in Northern China: Case study of Hebei Province

Soil microorganisms are biological factors involved in the farmland environment. The factors that shape soil microbial communities and how these are influenced by geographic location, planting pattern (open-field or greenhouse), and soil organic pollutants (phthalate esters, PAEs) remain poorly understood at large scales. Using 16 S rRNA gene and ITS sequencing, we characterized the soil microbiota in open-field and greenhouse soils in Hebei Province, China, and correlated their structure and composition to geographic location, planting pattern and PAEs. Compared with geographic location, planting pattern is more decisive for shaping soil microbes and has more significant effects on bacteria, and the effects are shaped by the number and types of core OTUs. PAEs participated in the shaping of soil microbial communities by altering the relative abundances of dominant microorganisms in the two planting patterns, and the effects of PAEs with high K_ow were more significant. PAEs have a greater impact on bacteria than fungi in both planting patterns. Bacteria in the greenhouse soil were sensitive to the 9 kinds of PAEs detected, however in the open-field samples, mainly responded to PAEs with high K_ow and rarely respond to PAEs with low K_ow. DEHP and DBP, as two monomers with the highest concentration, have significant effects on dominant genera of microorganisms under both planting patterns, with inhibiting effect on bacteria and significantly promotion on fungi. Our study clarified the factors that have a substantial impact on soil microorganisms at the provincial scale and the mechanisms involved in shaping soil microbial community structure, as well as the significant impact of PAEs on soil microbial dominant microorganisms.

Coupled effect of porous network and water content on the natural attenuation of diesel in unsaturated soils

The natural attenuation potential of a vadose zone against diesel is critical for optimizing remedial actions and determining groundwater vulnerability to contamination. Here, diesel attenuation in unsaturated soils was systematically examined to develop a qualitative relationship between physical soil properties and the natural attenuation capacity of a vadose zone against diesel. The uniformity coefficient (C_u) and water saturation (S_w, %) were considered as the proxies reflecting the degree of effects by porous network and water content in different soils, respectively. These, in turn, are related to the primary diesel attenuation mechanisms of volatilization and biodegradation. The volatilization of diesel was inversely proportional to C_u and S_w, which could be attributed to effective pore channels facilitating gas transport. Conversely, biodegradation was highly proportional to C_u under unsaturated conditions (S_w = 35-71%), owing to nutrients typically associated with fine soil particles. The microbial community in unsaturated soils was affected by S_w rather than C_u. The overall diesel attenuation including volatilization and biodegradation was optimized at S_w = 35% for all tested soils.

Insight into microbial degradation of hexabromocyclododecane (HBCD) in lake sediments under different hydrodynamic conditions

Hexabromocyclododecane (HBCD), an emerging persistent organic pollutant, has been widely detected in aquatic ecosystems with various hydrodynamic conditions, however, the effects of hydrodynamic changes on microbial degradation of HBCD in aquatic sediment remains unclear. Here, we conducted an annular flume experiment to characterize variation in HBCD removal from contaminated sediment under three hydrodynamic conditions with different flow velocities, as well as clarify the underlying microbial mechanisms. We detected significant HBCD removal and bromine ion generation in all contaminated sediments, and microbial reduction debromination was an important process for HBCD removal. At the end of the 49-day experiment, both HBCD removal percentage and the bromine ion concentration were significantly lower under dynamic water condition with higher sediment redox potential, compared with static water conditions. The dynamic water conditions resulted a relatively high sediment redox potential and decreased the iron reduction rate and the abundance of organohalide-respiring bacteria (OHRB) in the genera Geobatcer, Dehalogenimonas, Dehalobacter, and Dehalococcoide, which reduced the microbial degradation of HBCD in contaminated sediments. The community composition of both total bacteria and OHRB also differed significantly among hydrodynamic conditions. Some bacterial groups with HBCD degradation abilities such as Pseudomonas and Sulfuricurvum were less abundant under dynamic water conditions, and the HBCD degradation efficiencies were lower. These findings enhance our understanding of the bioremediation potential of HBCD-contaminated sediments in different hydrodynamic areas.

The Interplay of Iron Minerals and Microflora to Accelerate Cr (VI) Reduction

Widespread hexavalent chromium (Cr (VI)) in the environment has become a worldwide problem, and economical and efficient treatment is urgently needed. In this paper, the treatment method of Cr (VI) by microorganisms and iron minerals (pyrite and magnetite) under anaerobic conditions was investigated. Furthermore, the influence of Cr (VI) on the microbial community structure was explored. The reduction test demonstrated that the removal rate of Cr (VI) in a single biological group was 54.96%; however, in the pyrite and biological groups and magnetite and biological groups, the removal rates of Cr (VI) increased to 83.06% and 78.23%, respectively. Microorganisms and iron minerals work together to produce a better removal effect on the removal rate of Cr (VI). Mechanistic studies have found that in the process of Cr (VI) reduction, a passivation layer is formed on the surface of the mineral that hinders the progress of the reaction. The addition of bacteria can reduce the negative impact of the passivation layer. At the same time, iron minerals have better electron-receiving and -conducting ability and can be used as electron carriers for bacteria to reduce Cr (VI). In addition, iron minerals and the disappearance of Cr (VI) will change the structure of the community and affect the expression of its functions, which is more conducive to reducing Cr (VI). This work sheds new light on the treatment of heavy metal pollution and the understanding of the synergistic reduction mechanism of Cr (VI).

Sediment Remediation Using Activated Carbon: Effects of Sorbent Particle Size and Resuspension on Sequestration of Metals and Organic Contaminants

Thin-layer capping using activated carbon has been described as a cost-effective in situ sediment remediation method for organic contaminants. We compared the capping efficiency of powdered activated carbon (PAC) against granular activated carbon (GAC) using contaminated sediment from Oskarshamn harbor, Sweden. The effects of resuspension on contaminant retention and cap integrity were also studied. Intact sediment cores were collected from the outer harbor and brought to the laboratory. Three thin-layer caps, consisting of PAC or GAC mixed with clay or clay only, were added to the sediment surface. Resuspension was created using a motor-driven paddle to simulate propeller wash from ship traffic. Passive samplers were placed in the sediment and in the water column to measure the sediment-to-water release of polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), and metals. Our results show that a thin-layer cap with PAC reduced sediment-to-water fluxes of PCBs by 57% under static conditions and 91% under resuspension. Thin-layer capping with GAC was less effective than PAC but reduced fluxes of high-molecular weight PAHs. Thin-layer capping with activated carbon was less effective at retaining metals, except for Cd, the release of which was significantly reduced by PAC. Resuspension generally decreased water concentrations of dissolved cationic metals, perhaps because of sorption to suspended sediment particles. Sediment resuspension in treatments without capping increased fluxes of PCBs with log octanol-water partitioning coefficient (K_OW ) > 7 and PAHs with log K_OW of 5-6, but resuspension reduced PCB and PAH fluxes through the PAC thin-layer cap. Overall, PAC performed better than GAC, but adverse effects on the benthic community and transport of PAC to nontarget areas are drawbacks that favor the use of GAC. Environ Toxicol Chem 2022;41:1096-1110. © 2022 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC.

A Simple Analysis Method of Specific Anammox Activity Using a Respirometer

Anaerobic ammonium oxidation (anammox) is a biological nitrogen removal process with attractive prospects, such as no carbon addition, less aeration, lower greenhouse gas generation, and lower sludge production. However, it is difficult to maintain a stable anammox process since the anammox bacteria have a slow growth rate and high sensitivity to many factors. Therefore, it is very important to analyze and maintain the anammox activity as a process indicator for its successful operation. The conventional method for measuring the concentration of nitrogen compounds, such as ammonium, nitrite, or nitrogen gas is inconvenient during the reaction time for specific anammox activity (SAA) analysis, which can result in an inaccurately determined SAA due to the substrate loss and temperature change. In this study, a respirometer was utilized to analyze the SAA. The SAA values from a respirometer (rSAA) showed a similar pattern to the SAA values (mSAA) from the conventional method. All of the SAA analyses showed the highest value at 35 °C with a granule size of <1 mm. Statistical analysis showed no significant differences regardless of the analysis method, since the p-values for the t-test and Wilcoxon rank-sum test were >0.05. Therefore, the respirometer can be used as a simple and efficient tool for SAA analysis. Moreover, the operating maintenance and management of the anammox process can be improved due to the simple SAA analysis in the field.

Microbe mediated remediation of dyes, explosive waste and polyaromatic hydrocarbons, pesticides and pharmaceuticals

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Environmental pollutants dyes, pesticides, pharmaceuticals, explosive waste and polyaromatic hydrocarbons.

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Environmental pollutants toxicity.

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Possible microbial biodegradation pathways of environmental pollutants.

Industrialization and human activities have led to serious effects on environment. With the progress taking place in the biodegradation field, it is important to summarize the latest advancement. In this review, we intend to provide insights on the recent progress on the biodegradation of environmental contaminants such as dyes, pesticides, pharmaceuticals, explosive waste and polyaromatic hydrocarbons by microorganisms. Along with the biodegradation of environmental contaminants, toxicity effects have also been discussed.

The dosage-effect of biochar on anaerobic digestion under the suppression of oily sludge: Performance variation, microbial community succession and potential detoxification mechanisms

This study investigated the dosage-effect of biochar on the suppressed mesophilic digestion of oily sludge (OS) containing naphthalene (recalcitrant compound) and starch (easily bioavailable substrate). Methanogenesis was inhibited in control with OS, where biomethane yield (63.33 mL/gVS) was obviously lower than theoretical yield (260.55 mL/gVS). With adding optimal dose of biochar (0.60 g/gVS OS), the highest CH₄ yield (138.41 mL/gVS) was 2.19 times of control. Meanwhile, the efficiencies of hydrolysis, acidogenesis and acetogenesis were significantly enhanced. However, excessive biochar (4.80 g/gVS OS) caused negative effects with methanogenic efficiency diminished by 32.5% and lag phase prolonged by 5.72 h. Dissolved organic matter (DOM) analysis showed that humic acid-like and fulvic acid-like components percentages of fluorescence regional integration were decreased because of the adsorption of biochar. In addition, biochar mediating interspecies electron transfer selectively enriched electroactive fermentation bacteria (Clostridium and Bacteroides) and acetoclastic Methanosaeta, which was responsible for promoting mesophilic digestion performance. The functional genes related to metabolism and environmental information processing were potentially activated by biochar. Above results indicate that moderate biochar application may mitigate the bio-toxicity suppression of OS, which help to provide a promising pathway for reinforcing oily wastes bio-treatment.

Influence of carbon-containing and mineral sorbents on the toxicity of soil contaminated with benzo[a]pyrene during phytotesting

Benzo[a]pyrene (BaP) is a member of polycyclic aromatic hydrocarbons known for high persistency and toxicity. Technologies of BaP sorption through solid matrixes have received relatively more attention. The present study was devoted to the phytotesting investigations of two different groups of sorbents, such as carbonaceous, including biochar and granulated activated carbon (GAC), and mineral, including tripoli and diatomite. Evaluation of the BaP removing efficiency was carried out using the phytotesting method with spring barley in Haplic Chernozem contaminated with different levels of contamination (200 and 400 μg kg^-1 BaP). The sorbents' efficiency for BaP remediation was estimated in the sorbents doses from 0.5 to 2.5% per kg of soil. It was shown that biochar and GAC decreased the soil toxicity class to a greater extent than mineral sorbents ones. The effect intensified with an increase in applying sorbents doses. The optimal dose of carbonaceous sorbents into the soil contaminated with 200 µg kg^-1 was 1%, decreasing the BaP content up 57-59% in the soil. Simultaneously, the optimal dose of the mineral sorbents was found to be 1.5%, which decreased the BaP content in the soil up 41-48%. Increasing the BaP contamination level up to 400 µg kg^-1 showed the necessity of a sorbent dose increasing. In these conditions, among all applied sorbents, only 2% GAC could reduce the soil toxicity class to the normal level up to 0.91-1.10. It was shown that BaP tended to migrate from the soil to the roots and further into the vegetative part of barley.

Single and simultaneous effects of naphthalene and salinity on anaerobic digestion: Response surface methodology, microbial community analysis and potential functions prediction

Polycyclic aromatic hydrocarbons (PAHs) are a persistent and prevalent class of pollutants in petroleum-contaminated saline environment, which pose potential harm to organisms. Researches on anaerobic biodegradation of PAHs are gradually emerging, but the response of anaerobic microorganisms to salinity changes and the co-effects of salinity and PAHs in anaerobic digestion (AD) system have seldom been reported. Thus, we investigated the variations of AD system performance and anaerobic microbial community caused by different concentrations of naphthalene (Nap) or/and NaCl based on Box-Behnken Design (0 mg/L ≤ Nap ≤150 mg/L, 0 g/L ≤ NaCl ≤25 g/L). The promoted efficiencies of acidogenesis and methanogenesis were found in presence of moderate NaCl or Nap, but high salinity (NaCl >4.4 g/L) weakened AD performance. Moreover, the high salinity (NaCl >4.4 g/L) and Nap resulted in reduced microbial Ca²⁺ Mg²⁺- ATPase activity, poor EPS secretion and the highest difference of the microbial operational taxonomic units (OTUs), and synergistically inhibited AD process. Microbiological analysis revealed that the relative abundance of Clostridium and acetoclastic Methanosaeta was increased by 2.01 times and 2.17 times in single Nap treated group compared to control. With the simultaneous addition of NaCl and Nap, Proteiniphilum and hydrogenotrophic methanogens (Methanobacterium, Methanofollis, and Methanolinea) occupied the major abundance. Potential functions prediction indicated that high salinity could disrupt the co-metabolism between carbohydrate metabolism and Nap degradation. This study provides basis for anaerobic bioremediation of PAHs-polluted saline environment.

Anaerobic bacterial responses to carbonaceous materials and implications for contaminant transformation: Cellular, metabolic, and community level findings

Carbonaceous materials (CM) enhance the abundance and activity of bacteria capable of persistent organic (micro)pollutant (POP) degradation. This review synthesizes anaerobic bacterial responses to minimally modified CM in non-fuel cell bioremediation applications at three stages: attachment, metabolism, and biofilm genetic composition. Established relationships between biological behavior and CM surface properties are identified, but temporal relationships are not well understood, making it difficult to connect substratum properties and "pioneer" bacteria with mature microorganism-CM systems. Stark differences in laboratory methodology at each temporal stage results in observational, but not causative, linkages as system complexity increases. This review is the first to critically examine relationships between material and cellular properties with respect to time. The work highlights critical knowledge gaps that must be addressed to accurately predict microorganism-CM behavior and to tailor CM properties for optimized microbial activity, critical frontiers in establishing this approach as an effective bioremediation strategy.

Biological Effects of Activated Carbon on Benthic Macroinvertebrates are Determined by Particle Size and Ingestibility of Activated Carbon

The application of activated carbon (AC) to the surface of contaminated sediments is a promising technology for sediment remediation in situ. Amendment with AC has proved to be effective in reducing bioavailability and sediment-to-water release of hydrophobic organic contaminants. However, AC may cause positive or negative biological responses in benthic organisms. The causes of these effects, which include changes in growth, reproduction, and mortality, are unclear but are thought to be related to the size of AC particles. The present study investigated biological response to AC ranging from ingestible powdered AC to noningestible granular AC in two benthic deposit feeders: the polychaete Marenzelleria spp. and the clam Limecola balthica (syn. Macoma balthica). In the polychaete, exposure to powdered AC (ingestible) reduced both dry weight and carbon assimilation, whereas exposure to granular AC (noningestible) increased both dry weight and carbon assimilation. Responses in the clam were similar but less pronounced, indicating that response levels are species-specific and may vary within a benthic community. In addition, worms exposed to the finest ingestible AC particles had reduced gut microvilli length and reduced gut lumen, indicating starvation. These results strongly suggest that biological responses to AC depend on particle ingestibility, whereby exposure to ingestible particles may cause starvation through reduced bioavailability of food coingested with AC or due to rejection of AC-treated sediment as a food source. Environ Toxicol Chem 2021;40:3465-3477. © 2021 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC.

Progress and prospects of applying carbon-based materials (and nanomaterials) to accelerate anaerobic bioprocesses for the removal of micropollutants

Carbon‐based materials (CBM), including activated carbon (AC), activated fibres (ACF), biochar (BC), nanotubes (CNT), carbon xenogels (CX) and graphene nanosheets (GNS), possess unique properties such as high surface area, sorption and catalytic characteristics, making them very versatile for many applications in environmental remediation. They are powerful redox mediators (RM) in anaerobic processes, accelerating the rates and extending the level of the reduction of pollutants and, consequently, affecting positively the global efficiency of their partial or total removal. The extraordinary conductive properties of CBM, and the possibility of tailoring their surface to address specific pollutants, make them promising as catalysts in the treatment of effluents containing diverse pollutants. CBM can be combined with magnetic nanoparticles (MNM) assembling catalytic and magnetic properties in a single composite (C@MNM), allowing their recovery and reuse after the treatment process. Furthermore, these composites have demonstrated extraordinary catalytic properties. Evaluation of the toxicological and environmental impact of direct and indirect exposure to nanomaterials is an important issue that must be considered when nanomaterials are applied. Though the chemical composition, size and physical characteristics may contribute to toxicological effects, the potential toxic impact of using CBM is not completely clear and is not always assessed. This review gives an overview of the current research on the application of CBM and C@MNM in bioremediation and on the possible environmental impact and toxicity.

Electromicrobiology: the ecophysiology of phylogenetically diverse electroactive microorganisms

Electroactive microorganisms markedly affect many environments in which they establish outer-surface electrical contacts with other cells and minerals or reduce soluble extracellular redox-active molecules such as flavins and humic substances. A growing body of research emphasizes their broad phylogenetic diversity and shows that these microorganisms have key roles in multiple biogeochemical cycles, as well as the microbiome of the gut, anaerobic waste digesters and metal corrosion. Diverse bacteria and archaea have independently evolved cytochrome-based strategies for electron exchange between the outer cell surface and the cell interior, but cytochrome-free mechanisms are also prevalent. Electrically conductive protein filaments, soluble electron shuttles and non-biological conductive materials can substantially extend the electronic reach of microorganisms beyond the surface of the cell. The growing appreciation of the diversity of electroactive microorganisms and their unique electronic capabilities is leading to a broad range of applications.

Bioaugmentation strategy to enhance polycyclic aromatic hydrocarbons anaerobic biodegradation in contaminated soils

This paper proposes an innovative bioaugmentation approach for the remediation of polycyclic aromatic hydrocarbon (PAH) contaminated soils, based on a novel habitat-based strategy. This approach was tested using two inocula (i-24 and i-96) previously enriched through an anaerobic digestion process on wheat straw. It relies on the application of allochthonous microorganisms characterized by specific functional roles obtained by mimicking a natural hydrolytic environment such as the rumen. The inocula efficiency was tested in presence of naphthalene alone, benzo[a]pyrene alone, and a mix of both of them. In single-contamination tests, i-24 inoculum showed the highest biodegradation rates (84.7% for naphthalene and 51.7% for benzo[a]pyrene). These values were almost 1.2 times higher than those obtained for both contaminants with i-96 inoculum and in the control test in presence of naphthalene alone, while they were 3 times higher compared to the control test in presence of benzo[a]pyrene alone. In mixed-contamination tests, i-96 inoculum showed final biodegradation efficiencies for naphthalene and benzo[a]pyrene between 1.1 and 1.5 higher than i-24 inoculum or autochthonous biomass. Total microbial abundances increased in the bioaugmented tests in line with the PAH degradation. The microbial community structure showed the highest diversity at the end of the experiment in almost all cases. Values of the Firmicutes active fraction up to 7 times lower were observed in the i-24 bioaugmented tests compared to i-96 and control tests. This study highlights a successful bioaugmentation strategy with biological components that can be reused in multiple processes supporting an integrated and environmentally sustainable bioremediation system.

Anaerobic degradation of xenobiotic organic contaminants (XOCs): The role of electron flow and potential enhancing strategies

In groundwater, deep soil layer, sediment, the widespread of xenobiotic organic contaminants (XOCs) have been leading to the concern of human health and eco-environment safety, which calls for a better understanding on the fate and remediation of XOCs in anoxic matrices. In the absence of oxygen, bacteria utilize various oxidized substances, e.g. nitrate, sulphate, metallic (hydr)oxides, humic substance, as terminal electron acceptors (TEAs) to fuel anaerobic XOCs degradation. Although there have been increasing anaerobic biodegradation studies focusing on species identification, degrading pathways, community dynamics, systematic reviews on the underlying mechanism of anaerobic contaminants removal from the perspective of electron flow are limited. In this review, we provide the insight on anaerobic biodegradation from electrons aspect - electron production, transport, and consumption. The mechanism of the coupling between TEAs reduction and pollutants degradation is deconstructed in the level of community, pure culture, and cellular biochemistry. Hereby, relevant strategies to promote anaerobic biodegradation are proposed for guiding to an efficient XOCs bioremediation.

Microbes trading electricity in consortia of environmental and biotechnological significance

Favorable interspecies associations prevail in natural microbial assemblages. Some of these favorable associations are co-metabolic dependent partnerships in which extracellular electrons are exchanged between species. For such electron exchange to occur, the cells must exhibit electroactive interfaces and get involved in direct cell-to-cell contact (Direct Interspecies Electron Transfer/DIET) or use available conductive mineral grains from their environment (Conductive-particle-mediated Interspecies Electron Transfer/CIET). This review will highlight recent discoveries and knowledge gaps regarding DIET and CIET interspecies associations in artificial co-cultures and consortia from natural and man-made environments and emphasize approaches to validate DIET and CIET. Additionally, we acknowledge the initiation of a movement towards applying electric syntrophies in biotechnology, bioremediation and geoengineering for natural attenuation of toxic compounds. Next, we have highlighted the urgent research needs that must be met to develop such technologies.

Microbial composition of a hydropower cooling water system reveals thermophilic bacteria with a possible role in primary biofilm formation

Microfouling, ie biofilm formation on surfaces, can have an economic impact and requires costly maintenance in water-powered energy generation systems. In this study, the microbiota of a cooling system (filter and heat exchanger) in the Irapé hydroelectric power plant in Brazil was examined. The goal was to identify bacteria that could be targeted to more efficiently reduce biofilm formation. Two sampling campaigns were made corresponding to two well-defined seasons of the Brazilian Cerrado biome: the dry (campaign 1) and the wet (campaign 2). Microfouling communities varied considerably over time in samples obtained at different times after the last clearance of the heat exchanger. The thermophilic bacteria Meiothermus, Thermomonas and Symbiobacterium were exclusive and abundant in the microfouling of the heat exchanger in campaign 2, while methanotrophs and iron-reducing bacteria were abundant only in filter sediments. These findings could help to guide strategies for ecofriendly measures to reduce biofilm fouling in hydroelectric power plants, minimizing environmental and economic losses.

Nutrient depletion is the main limiting factor in the crude oil bioaugmentation process

The biodegradation was considered as the prime mechanism of crude oil degradation. To validate the efficacy and survival of the crude oil-degrading strain in a bioremediation process, the enhanced green fluorescent protein gene (egfp) was introduced into Acinetobacter sp. HC8-3S. In this study, an oil-contaminated sediment microcosm was conducted to investigate the temporal dynamics of the physicochemical characterization and microbial community in response to bacterium amendment. The introduced strains were able to survive, flourish and degrade crude oil quickly in the early stage of the bioremediation. However, the high abundance cannot be maintained due to the ammonium (NH₄⁺-N) and phosphorus (PO₄^3--P) contents decreased rapidly after 15 days of remediation. The sediment microbial community changed considerably and reached relatively stable after nutrient depletion. Therefore, the addition of crude oil and degrading cells did not show a long-time impact on the original microbial communities, and sufficient nitrogen and phosphorus nutrients ensures the survive and activity of degrader. Our studies expand the understanding of the crude oil degradative processes, which will help to develop more rational bioremediation strategies.

Powdered activated carbon (PAC) amendment enhances naphthalene biodegradation under strictly sulfate-reducing conditions

Capping represents an efficient and well-established practice to contain polycyclic aromatic hydrocarbons (PAHs) in sediments, reduce mobility, and minimize risks. Exposure to PAHs can encourage biodegradation, which can improve the performance of capping. This study investigates biodegradation of naphthalene (a model PAH) in highly reducing, sediment-like environments with amendment of different capping materials (PAC and sand). Microcosms were prepared with sediment enrichments, sulfate as an electron acceptor, and naphthalene. Results show that PAC stimulates naphthalene biodegradation and mineralization, as indicated by production of ¹⁴CO₂ from radiolabeled naphthalene. Mineralization in PAC systems correlates with the enrichment of genera (Geobacter and Desulfovirga) previously identified to biodegrade naphthalene (Spearman's, p < 0.05). Naphthalene decay in sand and media-free systems was not linked to biodegradation activity (ANOVA, p > 0.05), and microbial communities were correlated to biomass yields rather than metabolites. Naphthalene decay in PAC systems consists of three stages with respect to time: latent (0-88 days), exponential decay (88-210 days), and inactive (210-480 days). This study shows that PAC amendment enhances naphthalene biodegradation under strictly sulfate-reducing conditions and provides a kinetic and metagenomic characterization of systems demonstrating naphthalene decay.

An underappreciated DIET for anaerobic petroleum hydrocarbon-degrading microbial communities

Direct interspecies electron transfer (DIET) via electrically conductive minerals can play a role in the anaerobic oxidation of petroleum hydrocarbons in contaminated sites and can be exploited for the development of new, more effective bioremediation approaches.

New Frontiers of Anaerobic Hydrocarbon Biodegradation in the Multi-Omics Era

The accumulation of petroleum hydrocarbons in the environment substantially endangers terrestrial and aquatic ecosystems. Many microbial strains have been recognized to utilize aliphatic and aromatic hydrocarbons under aerobic conditions. Nevertheless, most of these pollutants are transferred by natural processes, including rain, into the underground anaerobic zones where their degradation is much more problematic. In oxic zones, anaerobic microenvironments can be formed as a consequence of the intensive respiratory activities of (facultative) aerobic microbes. Even though aerobic bioremediation has been well-characterized over the past few decades, ample research is yet to be done in the field of anaerobic hydrocarbon biodegradation. With the emergence of high-throughput techniques, known as omics (e.g., genomics and metagenomics), the individual biodegraders, hydrocarbon-degrading microbial communities and metabolic pathways, interactions can be described at a contaminated site. Omics approaches provide the opportunity to examine single microorganisms or microbial communities at the system level and elucidate the metabolic networks, interspecies interactions during hydrocarbon mineralization. Metatranscriptomics and metaproteomics, for example, can shed light on the active genes and proteins and functional importance of the less abundant species. Moreover, novel unculturable hydrocarbon-degrading strains and enzymes can be discovered and fit into the metabolic networks of the community. Our objective is to review the anaerobic hydrocarbon biodegradation processes, the most important hydrocarbon degraders and their diverse metabolic pathways, including the use of various terminal electron acceptors and various electron transfer processes. The review primarily focuses on the achievements obtained by the current high-throughput (multi-omics) techniques which opened new perspectives in understanding the processes at the system level including the metabolic routes of individual strains, metabolic/electric interaction of the members of microbial communities. Based on the multi-omics techniques, novel metabolic blocks can be designed and used for the construction of microbial strains/consortia for efficient removal of hydrocarbons in anaerobic zones.