1
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Ma W, Schmidt A, Strohmann C, Loh CCJ. Stereoselective Entry into α,α'-C-Oxepane Scaffolds through a Chalcogen Bonding Catalyzed Strain-Release C-Septanosylation Strategy. Angew Chem Int Ed Engl 2024; 63:e202405706. [PMID: 38687567 DOI: 10.1002/anie.202405706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Revised: 04/28/2024] [Accepted: 04/29/2024] [Indexed: 05/02/2024]
Abstract
The utility of unconventional noncovalent interactions (NCIs) such as chalcogen bonding has lately emerged as a robust platform to access synthetically difficult glycosides stereoselectively. Herein, we disclose the versatility of a phosphonochalcogenide (PCH) catalyst to facilitate access into the challenging, but biologically interesting 7-membered ring α,α'-C-disubstituted oxepane core through an α-selective strain-release C-glycosylation. Methodically, this strategy represents a switch from more common but entropically less desired macrocyclizations to a thermodynamically favored ring-expansion approach. In light of the general lack of stereoselective methods to access C-septanosides, a remarkable palette of silyl-based nucleophiles can be reliably employed in our method. This include a broad variety of useful synthons, such as easily available silyl-allyl, silyl-enol ether, silyl-ketene acetal, vinylogous silyl-ketene acetal, silyl-alkyne and silylazide reagents. Mechanistic investigations suggest that a mechanistic shift towards an intramolecular aglycone transposition involving a pentacoordinate silicon intermediate is likely responsible in steering the stereoselectivity.
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Affiliation(s)
- Wenpeng Ma
- Abteilung Chemische Biologie, Max Planck Institut für Molekulare Physiologie, Otto-Hahn-Straße 11, 44227, Dortmund, Germany
- Fakultät für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, 44227, Dortmund, Germany
| | - Annika Schmidt
- Fakultät für Chemie und Chemische Biologie, Anorganische Chemie, Technische Universität Dortmund, Otto-Hahn-Straße 6, 44227, Dortmund, Germany
| | - Carsten Strohmann
- Fakultät für Chemie und Chemische Biologie, Anorganische Chemie, Technische Universität Dortmund, Otto-Hahn-Straße 6, 44227, Dortmund, Germany
| | - Charles C J Loh
- Abteilung Chemische Biologie, Max Planck Institut für Molekulare Physiologie, Otto-Hahn-Straße 11, 44227, Dortmund, Germany
- Fakultät für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, 44227, Dortmund, Germany
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2
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Guo H, Kirchhoff JL, Strohmann C, Grabe B, Loh CCJ. Asymmetric Pd/Organoboron-Catalyzed Site-Selective Carbohydrate Functionalization with Alkoxyallenes Involving Noncovalent Stereocontrol. Angew Chem Int Ed Engl 2024; 63:e202400912. [PMID: 38530140 DOI: 10.1002/anie.202400912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Revised: 03/19/2024] [Accepted: 03/20/2024] [Indexed: 03/27/2024]
Abstract
Herein, we demonstrate the robustness of a synergistic chiral Pd/organoboron system in tackling a challenging suite of site-, regio-, enantio- and diastereoselectivity issues across a considerable palette of biologically relevant carbohydrate polyols, when prochiral alkoxyallenes were employed as electrophiles. In view of the burgeoning role of noncovalent interactions (NCIs) in stereoselective carbohydrate synthesis, our mechanistic experiments and DFT modeling of the reaction path unexpectedly revealed that NCIs such as hydrogen bonding and CH-π interactions between the resting states of the Pd-π-allyl complex and the borinate saccharide are critically involved in the stereoselectivity control. Our strategy thus illuminates the untapped potential of harnessing NCIs in the context of transition metal catalysis to tackle stereoselectivity challenges in carbohydrate functionalization.
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Affiliation(s)
- Hao Guo
- Abteilung Chemische Biologie, Max Planck Institut für Molekulare Physiologie, Otto-Hahn-Straße 11, 44227, Dortmund, Germany
- Fakultät für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, 44227, Dortmund, Germany
| | - Jan-Lukas Kirchhoff
- Technische Universität Dortmund, Fakultät für Chemie und Chemische Biologie Anorganische Chemie, Otto-Hahn-Straße 6, 44227, Dortmund, Germany
| | - Carsten Strohmann
- Technische Universität Dortmund, Fakultät für Chemie und Chemische Biologie Anorganische Chemie, Otto-Hahn-Straße 6, 44227, Dortmund, Germany
| | - Bastian Grabe
- NMR Department Fakultät für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, 44227, Dortmund, Germany
| | - Charles C J Loh
- Abteilung Chemische Biologie, Max Planck Institut für Molekulare Physiologie, Otto-Hahn-Straße 11, 44227, Dortmund, Germany
- Fakultät für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, 44227, Dortmund, Germany
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3
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Zhang W, Ren J, Wang D, Sun TY, Xia XF. Selective Reduction of Triple Bond via Proton-Coupled Electron Transfer for the Synthesis of α, β-Unsaturated γ-Lactams. Org Lett 2024; 26:3982-3986. [PMID: 38690829 DOI: 10.1021/acs.orglett.4c01235] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2024]
Abstract
Described herein is the development of a visible-light-induced photoredox 1,6-enyne reductive cyclization via selective reduction of a triple bond instead of an activated double bond. The selective 1,6-enyne radical cyclization/carbon═carbon double bond cleavage provided a straightforward route to structurally valuable α,β-unsaturated γ-lactams. TEMPO-trap experiments, control experiments, and DFT calculations have offered evidence supporting the possible catalytic cycle.
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Affiliation(s)
- Wenjuan Zhang
- Key Laboratory of Synthetic and Biological Colloids, Ministry of Education, School of Chemical and Material Engineering, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Juan Ren
- Key Laboratory of Synthetic and Biological Colloids, Ministry of Education, School of Chemical and Material Engineering, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Dawei Wang
- Key Laboratory of Synthetic and Biological Colloids, Ministry of Education, School of Chemical and Material Engineering, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Tian-Yu Sun
- Institute of Molecular Chemical Biology, Shenzhen Bay Laboratory, Shenzhen, Guangdong 518132, China
| | - Xiao-Feng Xia
- Key Laboratory of Synthetic and Biological Colloids, Ministry of Education, School of Chemical and Material Engineering, Jiangnan University, Wuxi, Jiangsu 214122, China
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4
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Wang C, Krupp A, Strohmann C, Grabe B, Loh CCJ. Harnessing Multistep Chalcogen Bonding Activation in the α-Stereoselective Synthesis of Iminoglycosides. J Am Chem Soc 2024; 146:10608-10620. [PMID: 38564319 PMCID: PMC11027159 DOI: 10.1021/jacs.4c00262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2024] [Revised: 03/14/2024] [Accepted: 03/15/2024] [Indexed: 04/04/2024]
Abstract
The use of noncovalent interactions (NCIs) has received significant attention as a pivotal synthetic handle. Recently, the exploitation of unconventional NCIs has gained considerable traction in challenging reaction manifolds such as glycosylation due to their capacity to facilitate entry into difficult-to-access sugars and glycomimetics. While investigations involving oxacyclic pyrano- or furanoside scaffolds are relatively common, methods that allow the selective synthesis of biologically important iminosugars are comparatively rare. Here, we report the capacity of a phosphonochalcogenide (PCH) to catalyze the stereoselective α-iminoglycosylation of iminoglycals with a wide array of glycosyl acceptors with remarkable protecting group tolerance. Mechanistic studies have illuminated the counterintuitive role of the catalyst in serially activating both the glycosyl donor and acceptor in the up/downstream stages of the reaction through chalcogen bonding (ChB). The dynamic interaction of chalcogens with substrates opens up new mechanistic opportunities based on iterative ChB catalyst engagement and disengagement in multiple elementary steps.
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Affiliation(s)
- Caiming Wang
- Abteilung
Chemische Biologie, Max Planck Institut
für Molekulare Physiologie, Otto-Hahn-Straße 11, 44227 Dortmund, Germany
- Fakultät
für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, 44227 Dortmund, Germany
| | - Anna Krupp
- Anorganische
Chemie, Technische Universität Dortmund, Otto-Hahn-Straße 6, 44227 Dortmund, Germany
| | - Carsten Strohmann
- Anorganische
Chemie, Technische Universität Dortmund, Otto-Hahn-Straße 6, 44227 Dortmund, Germany
| | - Bastian Grabe
- Fakultät
für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, 44227 Dortmund, Germany
| | - Charles C. J. Loh
- Abteilung
Chemische Biologie, Max Planck Institut
für Molekulare Physiologie, Otto-Hahn-Straße 11, 44227 Dortmund, Germany
- Fakultät
für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, 44227 Dortmund, Germany
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5
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Brunard E, Boquet V, Saget T, Sosa Carrizo ED, Sircoglou M, Dauban P. Catalyst-Controlled Intermolecular Homobenzylic C(sp 3)-H Amination for the Synthesis of β-Arylethylamines. J Am Chem Soc 2024; 146:5843-5854. [PMID: 38387076 DOI: 10.1021/jacs.3c10964] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2024]
Abstract
The combination of a tailored sulfamate with a C4-symmetrical rhodium(II) tetracarboxylate allows to uncover a selective intermolecular amination of unactivated homobenzylic C(sp3)-H bonds. The reaction has a broad scope (>30 examples) and proceeds with a high level of regioselectivity with homobenzylic/benzylic ratio of up to 35:1, thereby providing a direct access to β-arylethylamines that are of utmost interest in medicinal chemistry. Computational investigations evidenced a concerted mechanism, involving an asynchronous transition state. Based on a combined activation strain model and energy decomposition analysis, the regioselectivity of the reaction was found to rely mainly on the degree of orbital interaction between the [Rh2]-nitrene and the C-H bond. The latter is facilitated at the homobenzylic position due to the establishment of specific noncovalent interactions within the catalytic pocket.
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Affiliation(s)
- Erwan Brunard
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, 91198 Gif-sur-Yvette, France
| | - Vincent Boquet
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, 91198 Gif-sur-Yvette, France
| | - Tanguy Saget
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, 91198 Gif-sur-Yvette, France
| | - E Daiann Sosa Carrizo
- Université Paris-Saclay, CNRS, Institut de Chimie Moléculaire et des Matériaux d'Orsay, 91400 Orsay, France
| | - Marie Sircoglou
- Université Paris-Saclay, CNRS, Institut de Chimie Moléculaire et des Matériaux d'Orsay, 91400 Orsay, France
| | - Philippe Dauban
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, 91198 Gif-sur-Yvette, France
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6
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Guo H, Kirchhoff JL, Strohmann C, Grabe B, Loh CCJ. Exploiting π and Chalcogen Interactions for the β-Selective Glycosylation of Indoles through Glycal Conformational Distortion. Angew Chem Int Ed Engl 2024; 63:e202316667. [PMID: 38116860 DOI: 10.1002/anie.202316667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 12/18/2023] [Accepted: 12/18/2023] [Indexed: 12/21/2023]
Abstract
Harnessing unconventional noncovalent interactions (NCIs) is emerging as a formidable synthetic approach in difficult-to-access glycosidic chemical space. C-Glycosylation, in particular, has gained a flurry of recent attention. However, most reported methods are restricted to the relatively facile access to α-C-glycosides. Herein, we disclose a β-stereoselective glycosylation of indoles by employing a phosphonoselenide catalyst. The robustness of this protocol is exemplified by its amenability for reaction at both the indolyl C- and N- reactivity sites. In contrast to previous reports, in which the chalcogens were solely involved in Lewis acidic activation, our mechanistic investigation unraveled that the often neglected flanking aromatic substituents of phosphonoselenides can substantially contribute to catalysis by engaging in π-interactions. Computations and NMR spectroscopy indicated that the chalcogenic and aromatic components of the catalyst can be collectively exploited to foster conformational distortion of the glycal away from the usual half-chair to the boat conformation, which liberates the convex β-face for nucleophilic attack.
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Affiliation(s)
- Hao Guo
- Abteilung Chemische Biologie, Max Planck Institut für Molekulare Physiologie, Otto-Hahn-Straße 11, 44227, Dortmund, Germany
- Fakultät für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, 44227, Dortmund, Germany
| | - Jan-Lukas Kirchhoff
- Fakultät für Chemie und Chemische Biologie, Anorganische Chemie, Technische Universität Dortmund, Otto-Hahn-Straße 6, 44227, Dortmund, Germany
| | - Carsten Strohmann
- Fakultät für Chemie und Chemische Biologie, Anorganische Chemie, Technische Universität Dortmund, Otto-Hahn-Straße 6, 44227, Dortmund, Germany
| | - Bastian Grabe
- NMR Department, Fakultät für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, 44227, Dortmund, Germany
| | - Charles C J Loh
- Abteilung Chemische Biologie, Max Planck Institut für Molekulare Physiologie, Otto-Hahn-Straße 11, 44227, Dortmund, Germany
- Fakultät für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, 44227, Dortmund, Germany
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7
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Czernek J, Brus J. Reliable Dimerization Energies for Modeling of Supramolecular Junctions. Int J Mol Sci 2024; 25:602. [PMID: 38203773 PMCID: PMC10778993 DOI: 10.3390/ijms25010602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2023] [Revised: 12/23/2023] [Accepted: 12/25/2023] [Indexed: 01/12/2024] Open
Abstract
Accurate estimates of intermolecular interaction energy, ΔE, are crucial for modeling the properties of organic electronic materials and many other systems. For a diverse set of 50 dimers comprising up to 50 atoms (Set50-50, with 7 of its members being models of single-stacking junctions), benchmark ΔE data were compiled. They were obtained by the focal-point strategy, which involves computations using the canonical variant of the coupled cluster theory with singles, doubles, and perturbative triples [CCSD(T)] performed while applying a large basis set, along with extrapolations of the respective energy components to the complete basis set (CBS) limit. The resulting ΔE data were used to gauge the performance for the Set50-50 of several density-functional theory (DFT)-based approaches, and of one of the localized variants of the CCSD(T) method. This evaluation revealed that (1) the proposed "silver standard" approach, which employs the localized CCSD(T) method and CBS extrapolations, can be expected to provide accuracy better than two kJ/mol for absolute values of ΔE, and (2) from among the DFT techniques, computationally by far the cheapest approach (termed "ωB97X-3c/vDZP" by its authors) performed remarkably well. These findings are directly applicable in cost-effective yet reliable searches of the potential energy surfaces of noncovalent complexes.
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Affiliation(s)
- Jiří Czernek
- Institute of Macromolecular Chemistry, Czech Academy of Sciences, Heyrovsky Square 2, 16200 Prague, Czech Republic;
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8
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Prasoon A, Yu X, Hambsch M, Bodesheim D, Liu K, Zacarias A, Nguyen NN, Seki T, Dianat A, Croy A, Cuniberti G, Fontaine P, Nagata Y, Mannsfeld SCB, Dong R, Bonn M, Feng X. Site-selective chemical reactions by on-water surface sequential assembly. Nat Commun 2023; 14:8313. [PMID: 38097633 PMCID: PMC10721922 DOI: 10.1038/s41467-023-44129-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 12/01/2023] [Indexed: 12/17/2023] Open
Abstract
Controlling site-selectivity and reactivity in chemical reactions continues to be a key challenge in modern synthetic chemistry. Here, we demonstrate the discovery of site-selective chemical reactions on the water surface via a sequential assembly approach. A negatively charged surfactant monolayer on the water surface guides the electrostatically driven, epitaxial, and aligned assembly of reagent amino-substituted porphyrin molecules, resulting in a well-defined J-aggregated structure. This constrained geometry of the porphyrin molecules prompts the subsequent directional alignment of the perylenetetracarboxylic dianhydride reagent, enabling the selective formation of a one-sided imide bond between porphyrin and reagent. Surface-specific in-situ spectroscopies reveal the underlying mechanism of the dynamic interface that promotes multilayer growth of the site-selective imide product. The site-selective reaction on the water surface is further demonstrated by three reversible and irreversible chemical reactions, such as imide-, imine-, and 1, 3-diazole (imidazole)- bonds involving porphyrin molecules. This unique sequential assembly approach enables site-selective chemical reactions that can bring on-water surface synthesis to the forefront of modern organic chemistry.
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Affiliation(s)
- Anupam Prasoon
- Center for Advancing Electronics Dresden (cfaed) and Faculty of Chemistry and Food Chemistry, Technische Universität Dresden, 01062, Dresden, Germany
- Max Planck Institute for Microstructure Physics, Halle (Saale), D-06120, Germany
| | - Xiaoqing Yu
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany
| | - Mike Hambsch
- Center for Advancing Electronics Dresden (cfaed) and Faculty of Electrical and Computer Engineering, Technische Universität Dresden, 01062, Dresden, Germany
| | - David Bodesheim
- Institute for Materials Science and Max Bergmann Center of Biomaterials, Technische Universität Dresden, 01062, Dresden, Germany
| | - Kejun Liu
- Center for Advancing Electronics Dresden (cfaed) and Faculty of Chemistry and Food Chemistry, Technische Universität Dresden, 01062, Dresden, Germany
| | - Angelica Zacarias
- Max Planck Institute for Microstructure Physics, Halle (Saale), D-06120, Germany
| | - Nguyen Ngan Nguyen
- Center for Advancing Electronics Dresden (cfaed) and Faculty of Chemistry and Food Chemistry, Technische Universität Dresden, 01062, Dresden, Germany
| | - Takakazu Seki
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany
| | - Aerzoo Dianat
- Institute for Materials Science and Max Bergmann Center of Biomaterials, Technische Universität Dresden, 01062, Dresden, Germany
| | - Alexander Croy
- Institute of Physical Chemistry, Friedrich Schiller University Jena, 07737, Jena, Germany
| | - Gianaurelio Cuniberti
- Institute for Materials Science and Max Bergmann Center of Biomaterials, Technische Universität Dresden, 01062, Dresden, Germany
- Dresden Center for Computational Materials Science (DCMS), Technische Universität Dresden, 01062, Dresden, Germany
| | - Philippe Fontaine
- Synchrotron SOLEIL, L'Orme des Merisiers, Départementale 128, 91190, Saint-Aubin, France
| | - Yuki Nagata
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany
| | - Stefan C B Mannsfeld
- Center for Advancing Electronics Dresden (cfaed) and Faculty of Electrical and Computer Engineering, Technische Universität Dresden, 01062, Dresden, Germany.
| | - Renhao Dong
- Center for Advancing Electronics Dresden (cfaed) and Faculty of Chemistry and Food Chemistry, Technische Universität Dresden, 01062, Dresden, Germany.
- Key Laboratory of Colloid and Interface Chemistry of the Ministry of Education, School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, China.
| | - Mischa Bonn
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany.
| | - Xinliang Feng
- Center for Advancing Electronics Dresden (cfaed) and Faculty of Chemistry and Food Chemistry, Technische Universität Dresden, 01062, Dresden, Germany.
- Max Planck Institute for Microstructure Physics, Halle (Saale), D-06120, Germany.
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9
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Ma W, Kirchhoff JL, Strohmann C, Grabe B, Loh CCJ. Cooperative Bifurcated Chalcogen Bonding and Hydrogen Bonding as Stereocontrolling Elements for Selective Strain-Release Septanosylation. J Am Chem Soc 2023; 145:26611-26622. [PMID: 38032866 PMCID: PMC10722516 DOI: 10.1021/jacs.3c06984] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2023] [Revised: 11/08/2023] [Accepted: 11/08/2023] [Indexed: 12/02/2023]
Abstract
The exploitation of noncovalent interactions (NCIs) is emerging as a vital handle in tackling broad stereoselectivity challenges in synthesis. In particular, there has been significant recent interest in the harnessing of unconventional NCIs to surmount difficult selectivity challenges in glycosylations. Herein, we disclose the exploitation of an unconventional bifurcated chalcogen bonding and hydrogen bonding (HB) network, which paves the way for a robust catalytic strategy into biologically useful seven-membered ring sugars. Through 13C nuclear magnetic resonance (NMR) in situ monitoring, NMR titration experiments, and density functional theory (DFT) modeling, we propose a remarkable contemporaneous activation of multiple functional groups consisting of a bifurcated chalcogen bonding mechanism working hand-in-hand with HB activation. Significantly, the ester moiety installed on the glycosyl donor is critical in the establishment of the postulated ternary complex for stereocontrol. Through the 13C kinetic isotopic effect and kinetic studies, our data corroborated that a dissociative SNi-type mechanism forms the stereocontrolling basis for the excellent α-selectivity.
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Affiliation(s)
- Wenpeng Ma
- Abteilung
Chemische Biologie, Max-Planck-Institut
für Molekulare Physiologie, Otto-Hahn-Straße 11, Dortmund 44227, Germany
- Fakultät
für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, Dortmund 44227, Germany
| | - Jan-Lukas Kirchhoff
- Fakultät
für Chemie und Chemische Biologie, Anorganische Chemie, Technische Universität Dortmund, Otto-Hahn-Straße 6, Dortmund 44227, Germany
| | - Carsten Strohmann
- Fakultät
für Chemie und Chemische Biologie, Anorganische Chemie, Technische Universität Dortmund, Otto-Hahn-Straße 6, Dortmund 44227, Germany
| | - Bastian Grabe
- Fakultät
für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, Dortmund 44227, Germany
| | - Charles C. J. Loh
- Abteilung
Chemische Biologie, Max-Planck-Institut
für Molekulare Physiologie, Otto-Hahn-Straße 11, Dortmund 44227, Germany
- Fakultät
für Chemie und Chemische Biologie, Technische Universität Dortmund, Otto-Hahn-Straße 4a, Dortmund 44227, Germany
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10
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Boeré RT. Hydrogen Bonds Stabilize Chloroselenite Anions: Crystal Structure of a New Salt and Donor-Acceptor Bonding to SeO 2. Molecules 2023; 28:7489. [PMID: 38005211 PMCID: PMC10673179 DOI: 10.3390/molecules28227489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Revised: 11/03/2023] [Accepted: 11/06/2023] [Indexed: 11/26/2023] Open
Abstract
The single-crystal X-ray diffraction structure characterizing a new 4-methylbenzamidinium salt of chloroselenite [C8H11N2][ClSeO2] is reported. This is only the second crystal structure report on a ClSeO2- salt. The structure contains an extended planar hydrogen bond net, including a double interaction with both O atoms of the anion (an R228 ring in Etter notation). The anion has the shortest Se-Cl distances on record for any chloroselenite ion, 2.3202(9) Å. However, the two Se-O distances are distinct at 1.629(2) and 1.645(2) Å, attributed to weak anion-anion bridging involving the oxygen with the longer bond. DFT computations at the RB3PW91-D3/aug-CC-pVTZ level of theory reproduce the short Se-Cl distance in a gas-phase optimized ion pair, but free optimization of ClSeO2- leads to an elongation of this bond. A good match to a known value for [Me4N][ClSeO2] is found, which fits to the Raman spectroscopic evidence for this long-known salt and to data measured on solutions of the anion in CH3CN. The assignment of the experimental Raman spectrum was corrected by means of the DFT-computed vibrational spectrum, confirming the strong mixing of the symmetry coordinate of the Se-Cl stretch with both ν2 and ν4 modes.
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Affiliation(s)
- René T. Boeré
- Department of Chemistry and Biochemistry, University of Lethbridge, Lethbridge, AB T1K 3M4, Canada;
- Canadian Centre for Research in Applied Fluorine Technologies (C-CRAFT), University of Lethbridge, Lethbridge, AB T1K 3M4, Canada
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11
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Zhao W, Wang W, Zhou H, Liu Q, Ma Z, Huang H, Chang M. An Asymmetric Hydrogenation/N-Alkylation Sequence for a Step-Economical Route to Indolizidines and Quinolizidines. Angew Chem Int Ed Engl 2023; 62:e202308836. [PMID: 37643998 DOI: 10.1002/anie.202308836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 08/26/2023] [Accepted: 08/28/2023] [Indexed: 08/31/2023]
Abstract
The direct catalytic asymmetric hydrogenation of pyridines for the synthesis of piperidines remains a challenge. Herein, we report a one-pot asymmetric hydrogenation of pyridines with subsequent N-alkylation using a traceless Brønsted acid activation strategy. Catalyzed by an iridium-BINAP complex, the substrates undergo ketone reduction, cyclization and pyridine hydrogenation in sequence to form indolizidines and quinolizidines. The absolute configuration of the stereocenter of the alcohol is retained and influences the formation of the second stereocenter. Experimental and theoretical mechanistic studies reveal that the chloride anion and certain noncovalent interactions govern the stereoselectivity of the cascade reaction throughout the catalytic process.
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Affiliation(s)
- Wei Zhao
- College of Chemistry and Pharmacy, Northwest A&F University, 22 Xinong Road, Yangling, Shaanxi, 712100, P. R. China
| | - Wenji Wang
- College of Chemistry and Pharmacy, Northwest A&F University, 22 Xinong Road, Yangling, Shaanxi, 712100, P. R. China
| | - Huan Zhou
- College of Plant Protection, Shaanxi Research Center of Biopesticide Engineering and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China
| | - Qishan Liu
- College of Chemistry and Pharmacy, Northwest A&F University, 22 Xinong Road, Yangling, Shaanxi, 712100, P. R. China
| | - Zhiqing Ma
- College of Plant Protection, Shaanxi Research Center of Biopesticide Engineering and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China
| | - Haizhou Huang
- College of Chemistry and Pharmacy, Northwest A&F University, 22 Xinong Road, Yangling, Shaanxi, 712100, P. R. China
| | - Mingxin Chang
- College of Chemistry and Pharmacy, Northwest A&F University, 22 Xinong Road, Yangling, Shaanxi, 712100, P. R. China
- College of Plant Protection, Shaanxi Research Center of Biopesticide Engineering and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China
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12
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Zhou J, Li H, Li J, Liu X, Zhao J, Wang N, Wang Y, Zhang Y, Zhang X, Xin Y, Li X, Wang Z, Shao N, Lou X. Selection of regioselective DNA aptamer for detection of homocysteine in nondeproteinized human plasma. Biosens Bioelectron 2023; 237:115528. [PMID: 37480786 DOI: 10.1016/j.bios.2023.115528] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 06/29/2023] [Accepted: 07/10/2023] [Indexed: 07/24/2023]
Abstract
Small molecule-binding aptamers often suffer from high cross reactivity to structure analogues in biological samples, limiting their value for clinical diagnosis. Herein, we present a method to overcome this issue, by performing binding-inhibited organic reaction-based regioselective selection of aptamers against homocysteine (Hcy), which is a marker for diagnosing many disorders including stroke and Alzheimer's. This approach has led to isolation of a DNA aptamer that binds to the alkane thiol chain of Hcy with exceptional specificity against cysteine. It also binds with oxidized Hcy at weaker affinity. Using this new aptamer, we produced a reusable fluorescent optical fiber aptasensor for direct and validated detection of both free and total Hcy in nondeproteinized patient plasma in the diagnostic concentration range. The binding site-specific aptamer selection and optical-fiber-sensing strategy can expand the practical utility of aptamers in clinical diagnosis.
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Affiliation(s)
- Jianshuo Zhou
- Department of Chemistry, Capital Normal University, Xisanhuan North Road. 105, Beijing, 100048, China
| | - Hui Li
- Beijing Institute of Basic Medical Sciences, Beijing, 100850, China
| | - Jinming Li
- Department of Chemistry, Capital Normal University, Xisanhuan North Road. 105, Beijing, 100048, China
| | - Xuemei Liu
- Beijing Institute of Basic Medical Sciences, Beijing, 100850, China
| | - Jiaxing Zhao
- Department of Chemistry, Capital Normal University, Xisanhuan North Road. 105, Beijing, 100048, China
| | - Nan Wang
- Department of Chemistry, Capital Normal University, Xisanhuan North Road. 105, Beijing, 100048, China
| | - Yuxiao Wang
- Department of Chemistry, Capital Normal University, Xisanhuan North Road. 105, Beijing, 100048, China
| | - Yu Zhang
- Department of Chemistry, Capital Normal University, Xisanhuan North Road. 105, Beijing, 100048, China
| | - Xin Zhang
- Department of Chemistry, Capital Normal University, Xisanhuan North Road. 105, Beijing, 100048, China
| | - Yucen Xin
- Department of Chemistry, Capital Normal University, Xisanhuan North Road. 105, Beijing, 100048, China
| | - Xiaoqi Li
- Department of Chemistry, Capital Normal University, Xisanhuan North Road. 105, Beijing, 100048, China
| | - Zheng Wang
- Department of Chemistry, Capital Normal University, Xisanhuan North Road. 105, Beijing, 100048, China
| | - Ningsheng Shao
- Beijing Institute of Basic Medical Sciences, Beijing, 100850, China.
| | - Xinhui Lou
- Department of Chemistry, Capital Normal University, Xisanhuan North Road. 105, Beijing, 100048, China.
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13
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Kuninobu Y. Non-Covalent Interaction-Controlled Site-Selective C-H Transformations. CHEM REC 2023; 23:e202300149. [PMID: 37236150 DOI: 10.1002/tcr.202300149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 05/18/2023] [Indexed: 05/28/2023]
Abstract
Site-selective C-H transformations are important to obtain desired compounds as single products in a highly efficient manner. However, it is generally difficult to achieve such transformations because organic substrates contain many C-H bonds with similar reactivities. Therefore, the development of practical and efficient methods for controlling site selectivity is highly desirable. The most frequently used strategy is "directing group method". Although this method is highly effective and promotes site-selective reactions, it has several limitations. Our group recently reported other methods to achieve site-selective C-H transformations using non-covalent interactions between a substrate and a reagent or a catalyst and a substrate (non-covalent method). In this personal account, the background of site-selective C-H transformations, our reaction design to achieve site-selective C-H transformations, and recently reported reactions are explained.
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Affiliation(s)
- Yoichiro Kuninobu
- Institute for Materials Chemistry and Engineering, Interdisciplinary Engineering Sciences, Interdisciplinary Graduate School of Engineering Sciences, Kyushu University, 6-1 Kasugakoen, Kasuga-shi, Fukuoka, 816-8580, Japan
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14
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Abuhafez N, Gramage-Doria R. Boosting the activity of Mizoroki-Heck cross-coupling reactions with a supramolecular palladium catalyst favouring remote Zn⋯pyridine interactions. Faraday Discuss 2023; 244:186-198. [PMID: 37083293 DOI: 10.1039/d2fd00165a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Transition metal catalysis benefitting from supramolecular interactions in the secondary coordination sphere in order to pre-organize substrates around the active site and reach a specific selectivity typically occurs under long reaction times and mild reaction temperatures with the aim to maximize such subtle effects. Herein, we demonstrate that the kinetically labile Zn⋯N interaction between a pyridine substrate and a zinc-porphyrin site serving for substrate binding is a unique type of weak interaction that enables identification of supramolecular effects in transition metal catalysis after one hour at a high reaction temperature of 130 °C. Under carefully selected reaction conditions, supramolecularly-regulated palladium-catalyzed Mizoroki-Heck reactions between 3-bromopyridine and terminal olefins (acrylates or styrenes) proceeded in a more efficient manner compared to the non-supramolecular version. The supramolecular catalysis developed here also displayed interesting substrate-selectivity patterns.
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Affiliation(s)
- Naba Abuhafez
- Univ Rennes, CNRS, ISCR-UMR6226, F-35000 Rennes, France.
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15
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Aliyeva VA, Gurbanov AV, Mahmoud AG, Gomila RM, Frontera A, Mahmudov KT, Pombeiro AJL. Chalcogen bonding in copper(II)-mediated synthesis. Faraday Discuss 2023; 244:77-95. [PMID: 37089087 DOI: 10.1039/d2fd00160h] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
The chalcogen bond (ChB) is a noncovalent attraction between an electrophilic chalcogen atom and a nucleophilic (Nu) region in the same (intramolecular) or another (intermolecular) molecular entity: R-Ch⋯Nu (Ch = O, S, Se or Te; R = substituents; Nu = nucleophile). ChB is comparable to the hydrogen and halogen bonds both in terms of strengths and directionality. However, in contrast to the monovalent halogen atoms, usually the divalent or tetravalent chalcogen atoms are able to display more than one electrophilic centre (on account of the existence of two or three species bonded to the chalcogen atom), which provides an additional opportunity in the use of this type of noncovalent binding in synthetic operations. In this work, the role of ChB at the secondary coordination sphere of metal complexes through copper(II)-mediated activation of dioxygen or of one nitrile group of a 1,2,5-selenadiazole-3,4-dicarbonitrile ligand to form a carbimidate or an imino-carboxylic acid is demonstrated. DFT calculations allowed evaluation of the strength of the ChBs and proved their relevant structure directing role in the solid state architectures. The effect of metal-coordination on the σ-hole opposite to the coordinated SeO bond has been analysed using molecular electrostatic potential (MEP) surfaces and explains the greater ability of the coordinated selenoxide derivatives to form strong ChBs.
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Affiliation(s)
- Vusala A Aliyeva
- Centro de Química Estrutural, Institute of Molecular Sciences, Departamento de Engenharia Química, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisbon, Portugal.
| | - Atash V Gurbanov
- Centro de Química Estrutural, Institute of Molecular Sciences, Departamento de Engenharia Química, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisbon, Portugal.
- Excellence Center, Baku State University, Z. Xalilov Str. 23, Az 1148 Baku, Azerbaijan
| | - Abdallah G Mahmoud
- Centro de Química Estrutural, Institute of Molecular Sciences, Departamento de Engenharia Química, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisbon, Portugal.
- Department of Chemistry, Faculty of Science, Helwan University, Ain Helwan, Cairo 11795, Egypt
| | - Rosa M Gomila
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km7.5, Palma, Baleares, Spain.
| | - Antonio Frontera
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km7.5, Palma, Baleares, Spain.
| | - Kamran T Mahmudov
- Centro de Química Estrutural, Institute of Molecular Sciences, Departamento de Engenharia Química, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisbon, Portugal.
- Excellence Center, Baku State University, Z. Xalilov Str. 23, Az 1148 Baku, Azerbaijan
| | - Armando J L Pombeiro
- Centro de Química Estrutural, Institute of Molecular Sciences, Departamento de Engenharia Química, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisbon, Portugal.
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16
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Vicens A, Vicens L, Olivo G, Lanzalunga O, Di Stefano S, Costas M. Site-selective methylene C-H oxidation of an alkyl diamine enabled by supramolecular recognition using a bioinspired manganese catalyst. Faraday Discuss 2023; 244:51-61. [PMID: 37185809 DOI: 10.1039/d2fd00177b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Site-selective oxidation of aliphatic C-H bonds is a powerful synthetic tool because it enables rapid build-up of product complexity and diversity from simple precursors. Besides the poor reactivity of alkyl C-H bonds, the main challenge in this reaction consists in differentiating between the multiple similar sites present in most organic molecules. Herein, a manganese oxidation catalyst equipped with two 18-benzo-6-crown ether receptors has been employed in the oxidation of the long chain tetradecane-1,14-diamine. 1H-NMR studies evidence simultaneous binding of the two protonated amine moieties to the crown ether receptors. This recognition has been used to pursue site-selective oxidation of a methylenic site, using hydrogen peroxide as oxidant in the presence of carboxylic acids as co-ligands. Excellent site-selectivity towards the central methylenic sites (C6 and C7) is observed, overcoming selectivity parameters derived from polar deactivation by simple amine protonation and selectivity observed in the oxidation of related monoprotonated amines.
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Affiliation(s)
- Arnau Vicens
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química, Universitat de Girona, Campus de Montilivi, 17071 Girona, Spain.
| | - Laia Vicens
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química, Universitat de Girona, Campus de Montilivi, 17071 Girona, Spain.
| | - Giorgio Olivo
- Dipartimento di Chimica and Istituto CNR di Metodologie Chimiche (IMC-CNR), Sezione Meccanismi di Reazione, Sapienza Università di Roma, P.le A. Moro 5, I-00185 Rome, Italy.
| | - Osvaldo Lanzalunga
- Dipartimento di Chimica and Istituto CNR di Metodologie Chimiche (IMC-CNR), Sezione Meccanismi di Reazione, Sapienza Università di Roma, P.le A. Moro 5, I-00185 Rome, Italy.
| | - Stefano Di Stefano
- Dipartimento di Chimica and Istituto CNR di Metodologie Chimiche (IMC-CNR), Sezione Meccanismi di Reazione, Sapienza Università di Roma, P.le A. Moro 5, I-00185 Rome, Italy.
| | - Miquel Costas
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química, Universitat de Girona, Campus de Montilivi, 17071 Girona, Spain.
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17
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Mei S, Ou Q, Tang X, Xu JF, Zhang X. Stabilization of Carbocation Intermediate by Cucurbit[7]uril Enables High Photolysis Efficiency. Org Lett 2023; 25:5291-5296. [PMID: 37428144 DOI: 10.1021/acs.orglett.3c01854] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/11/2023]
Abstract
A cucurbit[7]uril-based host-guest strategy is employed to enhance the efficiency of photolysis reactions that release caged molecules from photoremovable protecting groups. The photolysis of benzyl acetate follows a heterolytic bond cleavage mechanism, thereby leading to the formation of a contact ion pair as the key reactive intermediate. The Gibbs free energy of the contact ion pair is lowered by 3.06 kcal/mol through the stabilization of cucurbit[7]uril, as revealed by DFT calculations, which results in a 40-fold increase in the quantum yield of the photolysis reaction. This methodology is also applicable to the chloride leaving group and the diphenyl photoremovable protecting group. We anticipate that this research presents a novel strategy to improve reactions involving active cationics, thereby enriching the field of supramolecular catalysis.
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Affiliation(s)
- Shan Mei
- Key Laboratory of Organic Optoelectronics & Molecular Engineering, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Qi Ou
- AI for Science Institute, Beijing 100080, China
- DP Technology, Beijing 100080, China
| | - Xingchen Tang
- Key Laboratory of Organic Optoelectronics & Molecular Engineering, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Jiang-Fei Xu
- Key Laboratory of Organic Optoelectronics & Molecular Engineering, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Xi Zhang
- Key Laboratory of Organic Optoelectronics & Molecular Engineering, Department of Chemistry, Tsinghua University, Beijing 100084, China
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18
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Chen SY, Chang R, Lin ZX, Lin CW, Shen LC, Sue ACH, Tseng MC, Chu JH. Palladium-Mediated C(sp 3)-H Bond Activation of N-Methyl- N-(pyridin-2-yl)benzamide: Direct Arylation/Alkylation and Mechanistic Investigation. J Org Chem 2023. [PMID: 37276376 DOI: 10.1021/acs.joc.3c00429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Herein, we present a facile synthetic methodology to produce a range of N-(CH2-aryl/alkyl)-substituted N-(pyridin-2-yl)benzamides via palladium-mediated C(sp3)-H bond activation. The N-methyl-N-(pyridin-2-yl)benzamide precursor was first reacted with palladium(II) acetate in a stoichiometric manner to obtain the key dinuclear palladacycle intermediates, whose structures were elucidated by mass spectrometric, NMR spectroscopic, and X-ray crystallographic studies in detail. The subsequent C(sp3)-H bond functionalizations on the N-methyl group of the starting substrate show facile productions of the corresponding N-(CH2-aryl/alkyl)-substituted N-(pyridin-2-yl)benzamides with good functional group tolerance. A plausible mechanism was proposed based on density functional theory calculations in conjunction with kinetic isotope effect experiments. Finally, the synthetic transformation from the prepared N-(CH2-aryl)-N-(pyridin-2-yl)benzamides through debenzoylation to N-(CH2-aryl)-2-aminopyridine was successfully demonstrated.
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Affiliation(s)
- Shih-Yun Chen
- Department of Applied Science, National Taitung University, Taitung, Taiwan 95092, R.O.C
| | - Rong Chang
- College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Zhong-Xin Lin
- Department of Applied Science, National Taitung University, Taitung, Taiwan 95092, R.O.C
| | - Chien-Wen Lin
- Department of Applied Science, National Taitung University, Taitung, Taiwan 95092, R.O.C
| | - Li-Ching Shen
- Department of Applied Chemistry, National Yang Ming Chiao Tung University, Hsinchu, Taiwan 300093, R.O.C
| | - Andrew C-H Sue
- College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Mei-Chun Tseng
- Institute of Chemistry, Academia Sinica, Taipei, Taiwan 115201, R.O.C
| | - Jean-Ho Chu
- Department of Applied Science, National Taitung University, Taitung, Taiwan 95092, R.O.C
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19
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Remote control over both site-selectivity and atroposelectivity of Suzuki–Miyaura coupling through distal ionic interactions. Tetrahedron Lett 2023. [DOI: 10.1016/j.tetlet.2023.154408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
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20
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Chen X, Chen H, Fraser Stoddart J. The Story of the Little Blue Box: A Tribute to Siegfried Hünig. Angew Chem Int Ed Engl 2023; 62:e202211387. [PMID: 36131604 PMCID: PMC10099103 DOI: 10.1002/anie.202211387] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Indexed: 02/02/2023]
Abstract
The tetracationic cyclophane, cyclobis(paraquat-p-phenylene), also known as the little blue box, constitutes a modular receptor that has facilitated the discovery of many host-guest complexes and mechanically interlocked molecules during the past 35 years. Its versatility in binding small π-donors in its tetracationic state, as well as forming trisradical tricationic complexes with viologen radical cations in its doubly reduced bisradical dicationic state, renders it valuable for the construction of various stimuli-responsive materials. Since the first reports in 1988, the little blue box has been featured in over 500 publications in the literature. All this research activity would not have been possible without the seminal contributions carried out by Siegfried Hünig, who not only pioneered the syntheses of viologen-containing cyclophanes, but also revealed their rich redox chemistry in addition to their ability to undergo intramolecular π-dimerization. This Review describes how his pioneering research led to the design and synthesis of the little blue box, and how this redox-active host evolved into the key component of molecular shuttles, switches, and machines.
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Affiliation(s)
- Xiao‐Yang Chen
- Department of ChemistryNorthwestern University2145 Sheridan RoadEvanstonIllinois 60208USA
| | - Hongliang Chen
- Stoddart Institute of Molecular ScienceDepartment of ChemistryZhejiang UniversityHangzhou310027China
- ZJU-Hangzhou Global Scientific and Technological Innovation CenterHangzhou311215China
| | - J. Fraser Stoddart
- Department of ChemistryNorthwestern University2145 Sheridan RoadEvanstonIllinois 60208USA
- Stoddart Institute of Molecular ScienceDepartment of ChemistryZhejiang UniversityHangzhou310027China
- ZJU-Hangzhou Global Scientific and Technological Innovation CenterHangzhou311215China
- School of ChemistryUniversity of New South WalesSydneyNSW 2052Australia
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21
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Jiao Y, Mao H, Qiu Y, Wu G, Chen H, Zhang L, Han H, Li X, Zhao X, Tang C, Chen XY, Feng Y, Stern CL, Wasielewski MR, Stoddart JF. Mechanical Bond-Assisted Full-Spectrum Investigation of Radical Interactions. J Am Chem Soc 2022; 144:23168-23178. [DOI: 10.1021/jacs.2c10882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Yang Jiao
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Haochuan Mao
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
- Institute for Sustainability and Energy at Northwestern, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Yunyan Qiu
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Guangcheng Wu
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Hongliang Chen
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
- Stoddart Institute of Molecular Science, Department of Chemistry, Zhejiang University, Hangzhou 310027, China
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou 311215, China
| | - Long Zhang
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Han Han
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Xuesong Li
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Xingang Zhao
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Chun Tang
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Xiao-Yang Chen
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Yuanning Feng
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Charlotte L. Stern
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Michael R. Wasielewski
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
- Institute for Sustainability and Energy at Northwestern, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - J. Fraser Stoddart
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
- Stoddart Institute of Molecular Science, Department of Chemistry, Zhejiang University, Hangzhou 310027, China
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou 311215, China
- School of Chemistry, University of New South Wales, Sydney, NSW 2052, Australia
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22
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Czernek J, Brus J, Czerneková V. A Cost Effective Scheme for the Highly Accurate Description of Intermolecular Binding in Large Complexes. Int J Mol Sci 2022; 23:15773. [PMID: 36555413 PMCID: PMC9780852 DOI: 10.3390/ijms232415773] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 11/23/2022] [Accepted: 12/07/2022] [Indexed: 12/15/2022] Open
Abstract
There has been a growing interest in quantitative predictions of the intermolecular binding energy of large complexes. One of the most important quantum chemical techniques capable of such predictions is the domain-based local pair natural orbital (DLPNO) scheme for the coupled cluster theory with singles, doubles, and iterative triples [CCSD(T)], whose results are extrapolated to the complete basis set (CBS) limit. Here, the DLPNO-based focal-point method is devised with the aim of obtaining CBS-extrapolated values that are very close to their canonical CCSD(T)/CBS counterparts, and thus may serve for routinely checking a performance of less expensive computational methods, for example, those based on the density-functional theory (DFT). The efficacy of this method is demonstrated for several sets of noncovalent complexes with varying amounts of the electrostatics, induction, and dispersion contributions to binding (as revealed by accurate DFT-based symmetry-adapted perturbation theory (SAPT) calculations). It is shown that when applied to dimeric models of poly(3-hydroxybutyrate) chains in its two polymorphic forms, the DLPNO-CCSD(T) and DFT-SAPT computational schemes agree to within about 2 kJ/mol of an absolute value of the interaction energy. These computational schemes thus should be useful for a reliable description of factors leading to the enthalpic stabilization of extended systems.
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Affiliation(s)
- Jiří Czernek
- Institute of Macromolecular Chemistry, Czech Academy of Sciences, Heyrovsky Square 2, 162 00 Prague, Czech Republic
| | - Jiří Brus
- Institute of Macromolecular Chemistry, Czech Academy of Sciences, Heyrovsky Square 2, 162 00 Prague, Czech Republic
| | - Vladimíra Czerneková
- Institute of Physics, Czech Academy of Science, Na Slovance 2, 182 21 Prague, Czech Republic
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23
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Wang M, Yang Q. Microenvironment engineering of supported metal nanoparticles for chemoselective hydrogenation. Chem Sci 2022; 13:13291-13302. [PMID: 36507185 PMCID: PMC9682894 DOI: 10.1039/d2sc04223a] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Accepted: 11/01/2022] [Indexed: 11/05/2022] Open
Abstract
Selective hydrogenation with supported metal catalysts widely used in the production of fine chemicals and pharmaceuticals often faces a trade-off between activity and selectivity, mainly due to the inability to adjust one factor of the active sites without affecting other factors. In order to solve this bottleneck problem, the modulation of the microenvironment of active sites has attracted more and more attention, inspired by the collaborative catalytic mode of enzymes. In this perspective, we aim to summarize recent advances in the regulation of the microenvironment surrounding supported metal nanoparticles (NPs) using porous materials enriched with organic functional groups. Insights on how the microenvironment induces the enrichment, oriented adsorption and activation of substrates through non-covalent interaction and thus determines the hydrogenation activity and selectivity will be particularly discussed. Finally, a brief summary will be provided, and challenges together with a perspective in microenvironment engineering will be proposed.
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Affiliation(s)
- Maodi Wang
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences 457 Zhongshan Road Dalian 116023 China
| | - Qihua Yang
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, Zhejiang Key Laboratory for Reactive Chemistry on Solid Surfaces, Institute of Physical Chemistry, Zhejiang Normal University Jinhua 321004 China
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24
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Gillespie J, Fanourakis A, Phipps RJ. Strategies That Utilize Ion Pairing Interactions to Exert Selectivity Control in the Functionalization of C-H Bonds. J Am Chem Soc 2022; 144:18195-18211. [PMID: 36178308 PMCID: PMC9562467 DOI: 10.1021/jacs.2c08752] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Indexed: 11/30/2022]
Abstract
Electrostatic attraction between two groups of opposite charge, typically known as ion-pairing, offers unique opportunities for the design of systems to enable selectivity control in chemical reactions. Catalysis using noncovalent interactions is an established and vibrant research area, but it is noticeable that hydrogen bonding interactions are still the main interaction of choice in system design. Opposite charges experience the powerful force of Coulombic attraction and have the ability to exert fundamental influence on the outcome of reactions that involve charged reagents, intermediates or catalysts. In this Perspective, we will examine how ion-pairing interactions have been used to control selectivity in C-H bond functionalization processes. This broad class of reactions provides an interesting and thought-provoking lens through which to examine the application of ion-pairing design strategies because it is one that encompasses great mechanistic diversity, poses significant selectivity challenges, and perhaps most importantly is of immense interest to synthetic chemists in both industry and academia. We survey reactions that proceed via radical and ionic mechanisms alongside those that involve transition metal catalysis and will deal with control of site-selectivity and enantioselectivity. We anticipate that as this emerging area develops, it will become an ever-more important design strategy for selectivity control.
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Affiliation(s)
| | | | - Robert J. Phipps
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.
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25
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Xia XF, Huang Q, Sun TY, Jiang Y, Ran G. Catalytic Desaturation and β-Fluorination of Aliphatic Amides Enabled by an Oxidative-Promoted Bond Destabilization. ACS Catal 2022. [DOI: 10.1021/acscatal.2c04014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Xiao-Feng Xia
- Key Laboratory of Synthetic and Biological Colloids, Ministry of Education, School of Chemical and Material Engineering, Jiangnan University, Wuxi, Jiangsu214122, China
| | - Quan Huang
- Key Laboratory of Synthetic and Biological Colloids, Ministry of Education, School of Chemical and Material Engineering, Jiangnan University, Wuxi, Jiangsu214122, China
| | - Tian-Yu Sun
- Institute of Chemical Biology, Shenzhen Bay Laboratory, Shenzhen518132, China
| | - Yuqin Jiang
- Henan Engineering Research Centre of Chiral Hydroxyl Pharmaceutical, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang453007, China
| | - Guoxia Ran
- Key Laboratory of Synthetic and Biological Colloids, Ministry of Education, School of Chemical and Material Engineering, Jiangnan University, Wuxi, Jiangsu214122, China
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26
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Witte MD, Minnaard AJ. Site-Selective Modification of (Oligo)Saccharides. ACS Catal 2022; 12:12195-12205. [PMID: 36249871 PMCID: PMC9552177 DOI: 10.1021/acscatal.2c03876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2022] [Revised: 09/14/2022] [Indexed: 11/29/2022]
Abstract
Oligosaccharides, either as such or as part of glycolipids, glycopeptides, or glycoproteins, are ubiquitous in nature and fulfill important roles in the living cell. Also in medicine and to some extent in materials, oligosaccharides play an important role. In order to study their function, modifying naturally occurring oligosaccharides, and building in reactive groups and reporter groups in oligosaccharides, are key strategies. The development of oligosaccharides as drugs, or vaccines, requires the introduction of subtle modifications in the structure of oligosaccharides to optimize efficacy and, in the case of antibiotics, circumvent bacterial resistance. Provided the natural oligosaccharide is available, site-selective modification is an attractive approach as total synthesis of the target is often very laborious. Researchers in catalysis areas, such as transition-metal catalysis, enzyme catalysis, organocatalysis, and photoredox catalysis, have made considerable progress in the development of site-selective and late-stage modification methods for mono- and oligosaccharides. It is foreseen that the fields of enzymatic modification of glycans and the chemical modification of (oligo)saccharides will approach and potentially meet each other, but there is a lot to learn and discover before this will be the case.
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Affiliation(s)
- Martin D. Witte
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 7, 9747
AG Groningen, The Netherlands
| | - Adriaan J. Minnaard
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 7, 9747
AG Groningen, The Netherlands
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27
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Wang F, Chen Y, Yu P, Chen GQ, Zhang X. Asymmetric Hydrogenation of Oximes Synergistically Assisted by Lewis and Brønsted Acids. J Am Chem Soc 2022; 144:17763-17768. [PMID: 36166275 DOI: 10.1021/jacs.2c07506] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Due to their low reactivity, difficult enantiocontrol, and proneness to N-O bond cleavage, the catalytic asymmetric hydrogenation of oximes to hydroxylamines has remained a significant challenge. Herein, a Lewis and Brønsted acid cooperation strategy was established for the asymmetric hydrogenation of oximes, providing the corresponding hydroxylamines with up to 95% yield and up to 96% ee. Addition of Lewis and Brønsted acid was crucial to obtain high conversion and enantioselectivity. Mechanistic investigations indicates that the thiourea fragment of the ligand, Lewis acid (In(OTf)3 or Zn(OAc)2), as well as the Brønsted acid (l-CSA) played vital roles in the control of reactivity and enantioselectivity of the reaction. In addition, the synthetic elaboration of this transformation was demonstrated by gram scale experiment with retention of the yield and enantioselectivity.
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Affiliation(s)
- Fangyuan Wang
- Department of Chemistry and Shenzhen Grubbs Institute, Southern University of Science and Technology, Shenzhen, 518000, China
| | - Yu Chen
- Department of Chemistry and Shenzhen Grubbs Institute, Southern University of Science and Technology, Shenzhen, 518000, China
| | - Peiyuan Yu
- Department of Chemistry and Shenzhen Grubbs Institute, Southern University of Science and Technology, Shenzhen, 518000, China
| | - Gen-Qiang Chen
- Academy for Advanced Interdisciplinary Studies, Southern University of Science and Technology, Shenzhen, 518000, China
| | - Xumu Zhang
- Department of Chemistry and Shenzhen Grubbs Institute, Southern University of Science and Technology, Shenzhen, 518000, China
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28
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Dhankhar J, Hofer MD, Linden A, Čorić I. Site-Selective C-H Arylation of Diverse Arenes Ortho to Small Alkyl Groups. Angew Chem Int Ed Engl 2022; 61:e202205470. [PMID: 35830351 DOI: 10.1002/anie.202205470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Indexed: 01/07/2023]
Abstract
Catalytic systems for direct C-H activation of arenes commonly show preference for electronically activated and sterically exposed C-H sites. Here we show that a range of functionally rich and pharmaceutically relevant arene classes can undergo site-selective C-H arylation ortho to small alkyl substituents, preferably endocyclic methylene groups. The C-H activation is experimentally supported as being the selectivity-determining step, while computational studies of the transition state models indicate the relevance of non-covalent interactions between the catalyst and the methylene group of the substrate. Our results suggest that preference for C(sp2 )-H activation next to alkyl groups could be a general selectivity mode, distinct from common steric and electronic factors.
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Affiliation(s)
- Jyoti Dhankhar
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland
| | - Micha D Hofer
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland
| | - Anthony Linden
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland
| | - Ilija Čorić
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland
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29
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Li M, Chia XL, Tian C, Zhu Y. Mechanically planar chiral rotaxanes through catalytic desymmetrization. Chem 2022. [DOI: 10.1016/j.chempr.2022.08.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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30
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Site‐Selective C–H Arylation of Diverse Arenes Ortho to Small Alkyl Groups. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202205470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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31
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Czernek J, Brus J, Czerneková V. A computational inspection of the dissociation energy of mid-sized organic dimers. J Chem Phys 2022; 156:204303. [DOI: 10.1063/5.0093557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The gas-phase value of the dissociation energy ( D0) is a key parameter employed in both experimental and theoretical descriptions of noncovalent complexes. The D0 data were obtained for a set of mid-sized organic dimers in their global minima which was located using geometry optimizations that applied ample basis sets together with either the conventional second-order Møller–Plesset (MP2) method or several dispersion-corrected density-functional theory (DFT-D) schemes. The harmonic vibrational zero-point (VZP) and deformation energies from the MP2 calculations were combined with electronic energies from the coupled cluster theory with singles, doubles, and iterative triples [CCSD(T)] extrapolated to the complete basis set (CBS) limit to estimate D0 with the aim of inspecting values that were most recently measured, and an analogous comparison was performed using the DFT-D data. In at least one case (namely, for the aniline⋯methane cluster), the D0 estimate that employed the CCSD(T)/CBS energies differed from experiment in the way that could not be explained by a possible deficiency in the VZP contribution. Curiously, one of the DFT-D schemes (namely, the B3LYP-D3/def2-QZVPPD) was able to reproduce all measured D0 values to within 1.0 kJ/mol from experimental error bars. These findings show the need for further measurements and computations of some of the complexes. In order to facilitate such studies, the physical nature of intermolecular interactions in the investigated dimers was analyzed by means of the DFT-based symmetry-adapted perturbation theory.
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Affiliation(s)
- Jiří Czernek
- Institute of Macromolecular Chemistry, Czech Academy of Sciences, Heyrovsky Square 2, 162 06 Praha 6, The Czech Republic
| | - Jiří Brus
- Institute of Macromolecular Chemistry, Czech Academy of Sciences, Heyrovsky Square 2, 162 06 Praha 6, The Czech Republic
| | - Vladimíra Czerneková
- Institute of Physics, Czech Academy of Sciences, Na Slovance 2, 182 21 Praha 8, The Czech Republic
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Kazem-Rostami M. A nitrogen-based chiral catenane for enantioenriching photocatalytic aerobic oxidation. NEW J CHEM 2022. [DOI: 10.1039/d2nj03732g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Tröger's base's chirality merges catenanes’ photosensitizing characteristics to introduce the first nitrogen-based chiral hetero[2]catenane that proceeds enantioenriching photocatalytic aerobic oxidations.
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Affiliation(s)
- Masoud Kazem-Rostami
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, USA
- Faculty of Science and Engineering, Macquarie University, North Ryde, NSW 2109, Australia
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