1
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Wong PC, Abdullah SS, Shapiai MI. Exceptional performance with minimal data using a generative adversarial network for alzheimer's disease classification. Sci Rep 2024; 14:17037. [PMID: 39043757 PMCID: PMC11266702 DOI: 10.1038/s41598-024-66874-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2023] [Accepted: 07/04/2024] [Indexed: 07/25/2024] Open
Abstract
The classification of Alzheimer's disease (AD) using deep learning models is hindered by the limited availability of data. Medical image datasets are scarce due to stringent regulations on patient privacy, preventing their widespread use in research. Moreover, although open-access databases such as the Open Access Series of Imaging Studies (OASIS) are available publicly for providing medical image data for research, they often suffer from imbalanced classes. Thus, to address the issue of insufficient data, this study proposes the integration of a generative adversarial network (GAN) that can achieve comparable accuracy with a reduced data requirement. GANs are unsupervised deep learning networks commonly used for data augmentation that generate high-quality synthetic data to overcome data scarcity. Experimental data from the OASIS database are used in this research to train the GAN model in generating synthetic MRI data before being included in a pretrained convolutional neural network (CNN) model for multistage AD classification. As a result, this study has demonstrated that a multistage AD classification accuracy above 80% can be achieved even with a reduced dataset. The exceptional performance of GANs positions them as a solution for overcoming the challenge of insufficient data in AD classification.
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Affiliation(s)
- Pui Ching Wong
- Biologically Inspired System and Technology Laboratory, Department of Electronic Systems Engineering, Malaysia-Japan International Institute of Technology, Universiti Teknologi Malaysia, Kuala Lumpur, Malaysia.
| | - Shahrum Shah Abdullah
- Biologically Inspired System and Technology Laboratory, Department of Electronic Systems Engineering, Malaysia-Japan International Institute of Technology, Universiti Teknologi Malaysia, Kuala Lumpur, Malaysia
| | - Mohd Ibrahim Shapiai
- Centre for Artificial Intelligence and Robotics Laboratory, Department of Electronic Systems Engineering, Malaysia-Japan International Institute of Technology, Universiti Teknologi Malaysia, Kuala Lumpur, Malaysia
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2
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Shaffi N, Subramanian K, Vimbi V, Hajamohideen F, Abdesselam A, Mahmud M. Performance Evaluation of Deep, Shallow and Ensemble Machine Learning Methods for the Automated Classification of Alzheimer's Disease. Int J Neural Syst 2024; 34:2450029. [PMID: 38576308 DOI: 10.1142/s0129065724500291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/06/2024]
Abstract
Artificial intelligence (AI)-based approaches are crucial in computer-aided diagnosis (CAD) for various medical applications. Their ability to quickly and accurately learn from complex data is remarkable. Deep learning (DL) models have shown promising results in accurately classifying Alzheimer's disease (AD) and its related cognitive states, Early Mild Cognitive Impairment (EMCI) and Late Mild Cognitive Impairment (LMCI), along with the healthy conditions known as Cognitively Normal (CN). This offers valuable insights into disease progression and diagnosis. However, certain traditional machine learning (ML) classifiers perform equally well or even better than DL models, requiring less training data. This is particularly valuable in CAD in situations with limited labeled datasets. In this paper, we propose an ensemble classifier based on ML models for magnetic resonance imaging (MRI) data, which achieved an impressive accuracy of 96.52%. This represents a 3-5% improvement over the best individual classifier. We evaluated popular ML classifiers for AD classification under both data-scarce and data-rich conditions using the Alzheimer's Disease Neuroimaging Initiative and Open Access Series of Imaging Studies datasets. By comparing the results to state-of-the-art CNN-centric DL algorithms, we gain insights into the strengths and weaknesses of each approach. This work will help users to select the most suitable algorithm for AD classification based on data availability.
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Affiliation(s)
- Noushath Shaffi
- College of Computing and Information Sciences, University of Technology and Applied Sciences, P.O. Box: 135, Suhar 311, Sultanate of Oman, Oman
| | - Karthikeyan Subramanian
- College of Computing and Information Sciences, University of Technology and Applied Sciences, P.O. Box: 135, Suhar 311, Sultanate of Oman, Oman
| | - Viswan Vimbi
- College of Computing and Information Sciences, University of Technology and Applied Sciences, P.O. Box: 135, Suhar 311, Sultanate of Oman, Oman
| | - Faizal Hajamohideen
- College of Computing and Information Sciences, University of Technology and Applied Sciences, P.O. Box: 135, Suhar 311, Sultanate of Oman, Oman
| | - Abdelhamid Abdesselam
- Department of Computer Science, College of Science, Sultan Qaboos University, P.O. Box: 36, Al-Khod 123, Sultanate of Oman, Oman
| | - Mufti Mahmud
- Department of Computer Science, Medical Technologies Innovation Facility and Centre for Computer Science and Informatics (CIRC), Nottingham Trent University, Nottingham NG11 8NS, UK
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3
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Ali MU, Kim KS, Khalid M, Farrash M, Zafar A, Lee SW. Enhancing Alzheimer's disease diagnosis and staging: a multistage CNN framework using MRI. Front Psychiatry 2024; 15:1395563. [PMID: 38979503 PMCID: PMC11228270 DOI: 10.3389/fpsyt.2024.1395563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Accepted: 06/07/2024] [Indexed: 07/10/2024] Open
Abstract
This study addresses the pervasive and debilitating impact of Alzheimer's disease (AD) on individuals and society, emphasizing the crucial need for timely diagnosis. We present a multistage convolutional neural network (CNN)-based framework for AD detection and sub-classification using brain magnetic resonance imaging (MRI). After preprocessing, a 26-layer CNN model was designed to differentiate between healthy individuals and patients with dementia. After detecting dementia, the 26-layer CNN model was reutilized using the concept of transfer learning to further subclassify dementia into mild, moderate, and severe dementia. Leveraging the frozen weights of the developed CNN on correlated medical images facilitated the transfer learning process for sub-classifying dementia classes. An online AD dataset is used to verify the performance of the proposed multistage CNN-based framework. The proposed approach yielded a noteworthy accuracy of 98.24% in identifying dementia classes, whereas it achieved 99.70% accuracy in dementia subclassification. Another dataset was used to further validate the proposed framework, resulting in 100% performance. Comparative evaluations against pre-trained models and the current literature were also conducted, highlighting the usefulness and superiority of the proposed framework and presenting it as a robust and effective AD detection and subclassification method.
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Affiliation(s)
- Muhammad Umair Ali
- Department of Artificial Intelligence and Robotics, Sejong University, Seoul, Republic of Korea
| | - Kwang Su Kim
- Department of Scientific Computing, Pukyong National University, Busan, Republic of Korea
- Interdisciplinary Biology Laboratory (iBLab), Division of Biological Science, Graduate School of Science, Nagoya University, Nagoya, Japan
| | - Majdi Khalid
- Department of Computer Science and Artificial Intelligence, College of Computing, Umm Al-Qura University, Makkah, Saudi Arabia
| | - Majed Farrash
- Department of Computer Science and Artificial Intelligence, College of Computing, Umm Al-Qura University, Makkah, Saudi Arabia
| | - Amad Zafar
- Department of Artificial Intelligence and Robotics, Sejong University, Seoul, Republic of Korea
| | - Seung Won Lee
- Department of Precision Medicine, Sungkyunkwan University School of Medicine, Suwon, Republic of Korea
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4
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Alp S, Akan T, Bhuiyan MS, Disbrow EA, Conrad SA, Vanchiere JA, Kevil CG, Bhuiyan MAN. Joint transformer architecture in brain 3D MRI classification: its application in Alzheimer's disease classification. Sci Rep 2024; 14:8996. [PMID: 38637671 PMCID: PMC11026447 DOI: 10.1038/s41598-024-59578-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Accepted: 04/12/2024] [Indexed: 04/20/2024] Open
Abstract
Alzheimer's disease (AD), a neurodegenerative disease that mostly affects the elderly, slowly impairs memory, cognition, and daily tasks. AD has long been one of the most debilitating chronic neurological disorders, affecting mostly people over 65. In this study, we investigated the use of Vision Transformer (ViT) for Magnetic Resonance Image processing in the context of AD diagnosis. ViT was utilized to extract features from MRIs, map them to a feature sequence, perform sequence modeling to maintain interdependencies, and classify features using a time series transformer. The proposed model was evaluated using ADNI T1-weighted MRIs for binary and multiclass classification. Two data collections, Complete 1Yr 1.5T and Complete 3Yr 3T, from the ADNI database were used for training and testing. A random split approach was used, allocating 60% for training and 20% for testing and validation, resulting in sample sizes of (211, 70, 70) and (1378, 458, 458), respectively. The performance of our proposed model was compared to various deep learning models, including CNN with BiL-STM and ViT with Bi-LSTM. The suggested technique diagnoses AD with high accuracy (99.048% for binary and 99.014% for multiclass classification), precision, recall, and F-score. Our proposed method offers researchers an approach to more efficient early clinical diagnosis and interventions.
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Affiliation(s)
- Sait Alp
- Department of Computer Engineering, Erzurum Technical University, Erzurum, Turkey
| | - Taymaz Akan
- Division of Clinical Informatics, Department of Medicine, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA
- Center for Brain Health, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA
| | - Md Shenuarin Bhuiyan
- Department of Pathology and Translational Pathobiology, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA
| | - Elizabeth A Disbrow
- Center for Brain Health, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA
- Department of Pharmacology, Toxicology and Neuroscience, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA
- Department of Neurology, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA
- Department of Psychiatry, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA
| | - Steven A Conrad
- Division of Clinical Informatics, Department of Medicine, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA
- Department of Pediatrics, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA
| | - John A Vanchiere
- Department of Pharmacology, Toxicology and Neuroscience, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA
- Department of Pediatrics, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA
| | - Christopher G Kevil
- Department of Pathology and Translational Pathobiology, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA
- Department of Molecular and Cellular Physiology, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA
| | - Mohammad A N Bhuiyan
- Division of Clinical Informatics, Department of Medicine, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA.
- Center for Brain Health, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA, 71103-4228, USA.
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5
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Adarsh V, Gangadharan GR, Fiore U, Zanetti P. Multimodal classification of Alzheimer's disease and mild cognitive impairment using custom MKSCDDL kernel over CNN with transparent decision-making for explainable diagnosis. Sci Rep 2024; 14:1774. [PMID: 38245656 PMCID: PMC10799876 DOI: 10.1038/s41598-024-52185-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Accepted: 01/15/2024] [Indexed: 01/22/2024] Open
Abstract
The study presents an innovative diagnostic framework that synergises Convolutional Neural Networks (CNNs) with a Multi-feature Kernel Supervised within-class-similar Discriminative Dictionary Learning (MKSCDDL). This integrative methodology is designed to facilitate the precise classification of individuals into categories of Alzheimer's Disease, Mild Cognitive Impairment (MCI), and Cognitively Normal (CN) statuses while also discerning the nuanced phases within the MCI spectrum. Our approach is distinguished by its robustness and interpretability, offering clinicians an exceptionally transparent tool for diagnosis and therapeutic strategy formulation. We use scandent decision trees to deal with the unpredictability and complexity of neuroimaging data. Considering that different people's brain scans are different, this enables the model to make more detailed individualised assessments and explains how the algorithm illuminates the specific neuroanatomical regions that are indicative of cognitive impairment. This explanation is beneficial for clinicians because it gives them concrete ideas for early intervention and targeted care. The empirical review of our model shows that it makes diagnoses with a level of accuracy that is unmatched, with a classification efficacy of 98.27%. This shows that the model is good at finding important parts of the brain that may be damaged by cognitive diseases.
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Affiliation(s)
- V Adarsh
- National Institute of Technology Tiruchirappalli, Tiruchirappalli, India
| | - G R Gangadharan
- National Institute of Technology Tiruchirappalli, Tiruchirappalli, India
| | - Ugo Fiore
- University of Salerno, Fisciano, Italy
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6
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Fathi S, Ahmadi A, Dehnad A, Almasi-Dooghaee M, Sadegh M. A Deep Learning-Based Ensemble Method for Early Diagnosis of Alzheimer's Disease using MRI Images. Neuroinformatics 2024; 22:89-105. [PMID: 38042764 PMCID: PMC10917836 DOI: 10.1007/s12021-023-09646-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/16/2023] [Indexed: 12/04/2023]
Abstract
Recently, the early diagnosis of Alzheimer's disease has gained major attention due to the growing prevalence of the disease and the resulting costs imposed on individuals and society. The main objective of this study was to propose an ensemble method based on deep learning for the early diagnosis of AD using MRI images. The methodology of this study consisted of collecting the dataset, preprocessing, creating the individual and ensemble models, evaluating the models based on ADNI data, and validating the trained model based on the local dataset. The proposed method was an ensemble approach selected through a comparative analysis of various ensemble scenarios. Finally, the six best individual CNN-based classifiers were selected to combine and constitute the ensemble model. The evaluation showed an accuracy rate of 98.57, 96.37, 94.22, 99.83, 93.88, and 93.92 for NC/AD, NC/EMCI, EMCI/LMCI, LMCI/AD, four-way and three-way classification groups, respectively. The validation results on the local dataset revealed an accuracy of 88.46 for three-way classification. Our performance results were higher than most reviewed studies and comparable with others. Although comparative analysis showed superior results of ensemble methods against individual architectures, there were no significant differences among various ensemble approaches. The validation results revealed the low performance of individual models in practice. In contrast, the ensemble method showed promising results. However, further studies on various and larger datasets are required to validate the generalizability of the model.
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Affiliation(s)
- Sina Fathi
- Department of Health Information Management, School of Allied Medical Sciences, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Ali Ahmadi
- Surrey Business School, University of Surrey, Guildford Surrey, GU2 7XH, UK.
| | - Afsaneh Dehnad
- School of Health Management and Information Sciences, Iran University of Medical Sciences, Tehran, Iran
| | - Mostafa Almasi-Dooghaee
- Neurology Department, Firoozgar Hospital, School of Medicine, Iran University of Medical Sciences, Tehran, Iran
| | - Melika Sadegh
- Neurology Department, Firoozgar Hospital, School of Medicine, Iran University of Medical Sciences, Tehran, Iran
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7
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Borchert RJ, Azevedo T, Badhwar A, Bernal J, Betts M, Bruffaerts R, Burkhart MC, Dewachter I, Gellersen HM, Low A, Lourida I, Machado L, Madan CR, Malpetti M, Mejia J, Michopoulou S, Muñoz-Neira C, Pepys J, Peres M, Phillips V, Ramanan S, Tamburin S, Tantiangco HM, Thakur L, Tomassini A, Vipin A, Tang E, Newby D, Ranson JM, Llewellyn DJ, Veldsman M, Rittman T. Artificial intelligence for diagnostic and prognostic neuroimaging in dementia: A systematic review. Alzheimers Dement 2023; 19:5885-5904. [PMID: 37563912 DOI: 10.1002/alz.13412] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Revised: 05/18/2023] [Accepted: 06/02/2023] [Indexed: 08/12/2023]
Abstract
INTRODUCTION Artificial intelligence (AI) and neuroimaging offer new opportunities for diagnosis and prognosis of dementia. METHODS We systematically reviewed studies reporting AI for neuroimaging in diagnosis and/or prognosis of cognitive neurodegenerative diseases. RESULTS A total of 255 studies were identified. Most studies relied on the Alzheimer's Disease Neuroimaging Initiative dataset. Algorithmic classifiers were the most commonly used AI method (48%) and discriminative models performed best for differentiating Alzheimer's disease from controls. The accuracy of algorithms varied with the patient cohort, imaging modalities, and stratifiers used. Few studies performed validation in an independent cohort. DISCUSSION The literature has several methodological limitations including lack of sufficient algorithm development descriptions and standard definitions. We make recommendations to improve model validation including addressing key clinical questions, providing sufficient description of AI methods and validating findings in independent datasets. Collaborative approaches between experts in AI and medicine will help achieve the promising potential of AI tools in practice. HIGHLIGHTS There has been a rapid expansion in the use of machine learning for diagnosis and prognosis in neurodegenerative disease Most studies (71%) relied on the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset with no other individual dataset used more than five times There has been a recent rise in the use of more complex discriminative models (e.g., neural networks) that performed better than other classifiers for classification of AD vs healthy controls We make recommendations to address methodological considerations, addressing key clinical questions, and validation We also make recommendations for the field more broadly to standardize outcome measures, address gaps in the literature, and monitor sources of bias.
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Affiliation(s)
- Robin J Borchert
- Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK
- Department of Radiology, University of Cambridge, Cambridge, UK
| | - Tiago Azevedo
- Department of Computer Science and Technology, University of Cambridge, Cambridge, UK
| | - AmanPreet Badhwar
- Department of Pharmacology and Physiology, University of Montreal, Montreal, Canada
- Centre de recherche de l'Institut Universitaire de Gériatrie (CRIUGM), Montreal, Canada
| | - Jose Bernal
- Centre for Clinical Brain Sciences, The University of Edinburgh, Edinburgh, UK
- Institute of Cognitive Neurology and Dementia Research, Otto-von-Guericke University Magdeburg, Magdeburg, Germany
- German Center for Neurodegenerative Diseases (DZNE), Magdeburg, Germany
| | - Matthew Betts
- Institute of Cognitive Neurology and Dementia Research, Otto-von-Guericke University Magdeburg, Magdeburg, Germany
- German Center for Neurodegenerative Diseases (DZNE), Magdeburg, Germany
- Center for Behavioral Brain Sciences, University of Magdeburg, Magdeburg, Germany
| | - Rose Bruffaerts
- Computational Neurology, Experimental Neurobiology Unit, Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium
- Biomedical Research Institute, Hasselt University, Diepenbeek, Belgium
| | | | - Ilse Dewachter
- Biomedical Research Institute, Hasselt University, Diepenbeek, Belgium
| | - Helena M Gellersen
- German Center for Neurodegenerative Diseases (DZNE), Magdeburg, Germany
- Department of Psychology, University of Cambridge, Cambridge, UK
| | - Audrey Low
- Department of Psychiatry, University of Cambridge, Cambridge, UK
| | | | - Luiza Machado
- Department of Biochemistry, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
| | | | - Maura Malpetti
- Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK
| | - Jhony Mejia
- Department of Biomedical Engineering, Universidad de Los Andes, Bogotá, Colombia
| | - Sofia Michopoulou
- Imaging Physics, University Hospital Southampton NHS Foundation Trust, Southampton, UK
| | - Carlos Muñoz-Neira
- Research into Memory, Brain sciences and dementia Group (ReMemBr Group), Translational Health Sciences, Bristol Medical School, University of Bristol, Bristol, UK
- Artificial Intelligence & Computational Neuroscience Group (AICN Group), Sheffield Institute for Translational Neuroscience (SITraN), Department of Neuroscience, University of Sheffield, Sheffield, UK
| | - Jack Pepys
- Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK
- Department of Biomedical Sciences, Humanitas University, Pieve Emanuele, Italy
| | - Marion Peres
- Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK
| | | | - Siddharth Ramanan
- Medical Research Council Cognition and Brain Sciences Unit, University of Cambridge, Cambridge, UK
| | - Stefano Tamburin
- Department of Neurosciences, Biomedicine and Movement Sciences, University of Verona, Verona, Italy
| | | | - Lokendra Thakur
- Division of Genetics and Genomics, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA
- Broad Institute of MIT and Harvard, Cambridge, UK
- Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA
| | - Alessandro Tomassini
- Medical Research Council Cognition and Brain Sciences Unit, University of Cambridge, Cambridge, UK
| | | | - Eugene Tang
- Population Health Sciences Institute, Newcastle University, Newcastle upon Tyne, UK
| | - Danielle Newby
- Department of Psychiatry, University of Oxford, Oxford, UK
| | | | - David J Llewellyn
- University of Exeter Medical School, Exeter, UK
- Alan Turing Institute, London, UK
| | - Michele Veldsman
- Department of Experimental Psychology, University of Oxford, Oxford, UK
| | - Timothy Rittman
- Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK
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8
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Shanmugavadivel K, Sathishkumar VE, Cho J, Subramanian M. Advancements in computer-assisted diagnosis of Alzheimer's disease: A comprehensive survey of neuroimaging methods and AI techniques for early detection. Ageing Res Rev 2023; 91:102072. [PMID: 37709055 DOI: 10.1016/j.arr.2023.102072] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 09/05/2023] [Accepted: 09/10/2023] [Indexed: 09/16/2023]
Abstract
Alzheimer's Disease (AD) is a brain disorder that causes the brain to shrink and eventually causes brain cells to die. This neurological condition progressively hampers cognitive and memory functions, along with the ability to carry out fundamental tasks over time. From the symptoms it is very difficult to detect during its early stage. It has become necessary to develop a computer assisted diagnostic models for the early AD detection. This survey work, discussed about a review of 110 published AD detection methods and techniques from the year 2011 to till-date. This study lies in its comprehensive exploration of AD detection methods using a range of artificial intelligence (AI) techniques and neuroimaging modalities. By collecting and analysing 50 papers related to AD diagnosis datasets, the study provides a comprehensive understanding of the diversity of input types, subjects, and classes used in AD research. Summarizing 60 papers on methodologies gives researchers a succinct overview of various approaches that contribute to enhancing detection accuracy. From the review, data are acquired and pre-processed form multiple modalities of neuroimaging. This paper mainly focused on review of different datasets used, various feature extraction methods, parameters used in neuro images. To diagnosis the Alzheimer's disease, the existing methods utilized three most common artificial intelligence techniques such as machine learning, deep learning, and transfer learning. We conclude this survey work by providing future perspectives for AD diagnosis at early stage.
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Affiliation(s)
| | - V E Sathishkumar
- Department of Software Engineering, Jeonbuk National University, Jeonju-si, Jeollabuk-do 54896, Republic of Korea
| | - Jaehyuk Cho
- Department of Software Engineering, Jeonbuk National University, Jeonju-si, Jeollabuk-do 54896, Republic of Korea.
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9
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Saleh H, Amer E, Abuhmed T, Ali A, Al-Fuqaha A, El-Sappagh S. Computer aided progression detection model based on optimized deep LSTM ensemble model and the fusion of multivariate time series data. Sci Rep 2023; 13:16336. [PMID: 37770490 PMCID: PMC10539296 DOI: 10.1038/s41598-023-42796-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Accepted: 09/14/2023] [Indexed: 09/30/2023] Open
Abstract
Alzheimer's disease (AD) is the most common form of dementia. Early and accurate detection of AD is crucial to plan for disease modifying therapies that could prevent or delay the conversion to sever stages of the disease. As a chronic disease, patient's multivariate time series data including neuroimaging, genetics, cognitive scores, and neuropsychological battery provides a complete profile about patient's status. This data has been used to build machine learning and deep learning (DL) models for the early detection of the disease. However, these models still have limited performance and are not stable enough to be trusted in real medical settings. Literature shows that DL models outperform classical machine learning models, but ensemble learning has proven to achieve better results than standalone models. This study proposes a novel deep stacking framework which combines multiple DL models to accurately predict AD at an early stage. The study uses long short-term memory (LSTM) models as base models over patient's multivariate time series data to learn the deep longitudinal features. Each base LSTM classifier has been optimized using the Bayesian optimizer using different feature sets. As a result, the final optimized ensembled model employed heterogeneous base models that are trained on heterogeneous data. The performance of the resulting ensemble model has been explored using a cohort of 685 patients from the University of Washington's National Alzheimer's Coordinating Center dataset. Compared to the classical machine learning models and base LSTM classifiers, the proposed ensemble model achieves the highest testing results (i.e., 82.02, 82.25, 82.02, and 82.12 for accuracy, precision, recall, and F1-score, respectively). The resulting model enhances the performance of the state-of-the-art literature, and it could be used to build an accurate clinical decision support tool that can assist domain experts for AD progression detection.
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Affiliation(s)
- Hager Saleh
- Faculty of Computers and Artificial Intelligence, South Valley University, Hurghada, Egypt
| | - Eslam Amer
- Communications and Information Technology, The Institute of Electronics, Queen's University of Belfast, Belfast, UK
| | - Tamer Abuhmed
- Information Laboratory (InfoLab), College of Computing and Informatics, Sungkyunkwan University, Seoul, Suwon, 16419, South Korea.
| | - Amjad Ali
- Information and Computing Technology (ICT) Division, College of Science and Engineering (CSE), Hamad Bin Khalifa University, Doha, Qatar
| | - Ala Al-Fuqaha
- Information and Computing Technology (ICT) Division, College of Science and Engineering (CSE), Hamad Bin Khalifa University, Doha, Qatar
| | - Shaker El-Sappagh
- Information Laboratory (InfoLab), College of Computing and Informatics, Sungkyunkwan University, Seoul, Suwon, 16419, South Korea.
- Faculty of Computer Science and Engineering, Galala University, Suez, 435611, Egypt.
- Faculty of Computers and Artificial Intelligence, Benha University, Banha, 13518, Egypt.
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10
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Gupta R, Kumari S, Senapati A, Ambasta RK, Kumar P. New era of artificial intelligence and machine learning-based detection, diagnosis, and therapeutics in Parkinson's disease. Ageing Res Rev 2023; 90:102013. [PMID: 37429545 DOI: 10.1016/j.arr.2023.102013] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Revised: 06/26/2023] [Accepted: 07/06/2023] [Indexed: 07/12/2023]
Abstract
Parkinson's disease (PD) is characterized by the loss of neuronal cells, which leads to synaptic dysfunction and cognitive defects. Despite the advancements in treatment strategies, the management of PD is still a challenging event. Early prediction and diagnosis of PD are of utmost importance for effective management of PD. In addition, the classification of patients with PD as compared to normal healthy individuals also imposes drawbacks in the early diagnosis of PD. To address these challenges, artificial intelligence (AI) and machine learning (ML) models have been implicated in the diagnosis, prediction, and treatment of PD. Recent times have also demonstrated the implication of AI and ML models in the classification of PD based on neuroimaging methods, speech recording, gait abnormalities, and others. Herein, we have briefly discussed the role of AI and ML in the diagnosis, treatment, and identification of novel biomarkers in the progression of PD. We have also highlighted the role of AI and ML in PD management through altered lipidomics and gut-brain axis. We briefly explain the role of early PD detection through AI and ML algorithms based on speech recordings, handwriting patterns, gait abnormalities, and neuroimaging techniques. Further, the review discuss the potential role of the metaverse, the Internet of Things, and electronic health records in the effective management of PD to improve the quality of life. Lastly, we also focused on the implementation of AI and ML-algorithms in neurosurgical process and drug discovery.
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Affiliation(s)
- Rohan Gupta
- Molecular Neuroscience and Functional Genomics Laboratory, Department of Biotechnology, Delhi Technological, University, USA.
| | - Smita Kumari
- Molecular Neuroscience and Functional Genomics Laboratory, Department of Biotechnology, Delhi Technological, University, USA
| | | | - Rashmi K Ambasta
- Molecular Neuroscience and Functional Genomics Laboratory, Department of Biotechnology, Delhi Technological, University, USA
| | - Pravir Kumar
- Molecular Neuroscience and Functional Genomics Laboratory, Department of Biotechnology, Delhi Technological, University, USA.
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11
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Mujahid M, Rehman A, Alam T, Alamri FS, Fati SM, Saba T. An Efficient Ensemble Approach for Alzheimer's Disease Detection Using an Adaptive Synthetic Technique and Deep Learning. Diagnostics (Basel) 2023; 13:2489. [PMID: 37568852 PMCID: PMC10417320 DOI: 10.3390/diagnostics13152489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Revised: 07/05/2023] [Accepted: 07/08/2023] [Indexed: 08/13/2023] Open
Abstract
Alzheimer's disease is an incurable neurological disorder that leads to a gradual decline in cognitive abilities, but early detection can significantly mitigate symptoms. The automatic diagnosis of Alzheimer's disease is more important due to the shortage of expert medical staff, because it reduces the burden on medical staff and enhances the results of diagnosis. A detailed analysis of specific brain disorder tissues is required to accurately diagnose the disease via segmented magnetic resonance imaging (MRI). Several studies have used the traditional machine-learning approaches to diagnose the disease from MRI, but manual extracted features are more complex, time-consuming, and require a huge amount of involvement from expert medical staff. The traditional approach does not provide an accurate diagnosis. Deep learning has automatic extraction features and optimizes the training process. The Magnetic Resonance Imaging (MRI) Alzheimer's disease dataset consists of four classes: mild demented (896 images), moderate demented (64 images), non-demented (3200 images), and very mild demented (2240 images). The dataset is highly imbalanced. Therefore, we used the adaptive synthetic oversampling technique to address this issue. After applying this technique, the dataset was balanced. The ensemble of VGG16 and EfficientNet was used to detect Alzheimer's disease on both imbalanced and balanced datasets to validate the performance of the models. The proposed method combined the predictions of multiple models to make an ensemble model that learned complex and nuanced patterns from the data. The input and output of both models were concatenated to make an ensemble model and then added to other layers to make a more robust model. In this study, we proposed an ensemble of EfficientNet-B2 and VGG-16 to diagnose the disease at an early stage with the highest accuracy. Experiments were performed on two publicly available datasets. The experimental results showed that the proposed method achieved 97.35% accuracy and 99.64% AUC for multiclass datasets and 97.09% accuracy and 99.59% AUC for binary-class datasets. We evaluated that the proposed method was extremely efficient and provided superior performance on both datasets as compared to previous methods.
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Affiliation(s)
- Muhammad Mujahid
- Department of Computer Science, Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan 64200, Pakistan;
| | - Amjad Rehman
- Artificial Intelligence & Data Analytics Lab CCIS, Prince Sultan University, Riyadh 11586, Saudi Arabia; (A.R.); (S.M.F.); (T.S.)
| | - Teg Alam
- Department of Industrial Engineering, College of Engineering, Prince Sattam bin Abdulaziz University, Al Kharj 11942, Saudi Arabia;
| | - Faten S. Alamri
- Department of Mathematical Sciences, College of Science, Princess Nourah Bint Abdulrahman University, P.O.Box 84428, Riyadh 11671, Saudi Arabia
| | - Suliman Mohamed Fati
- Artificial Intelligence & Data Analytics Lab CCIS, Prince Sultan University, Riyadh 11586, Saudi Arabia; (A.R.); (S.M.F.); (T.S.)
| | - Tanzila Saba
- Artificial Intelligence & Data Analytics Lab CCIS, Prince Sultan University, Riyadh 11586, Saudi Arabia; (A.R.); (S.M.F.); (T.S.)
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12
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Azevedo T, Bethlehem RAI, Whiteside DJ, Swaddiwudhipong N, Rowe JB, Lió P, Rittman T. Identifying healthy individuals with Alzheimer's disease neuroimaging phenotypes in the UK Biobank. COMMUNICATIONS MEDICINE 2023; 3:100. [PMID: 37474615 PMCID: PMC10359360 DOI: 10.1038/s43856-023-00313-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Accepted: 06/05/2023] [Indexed: 07/22/2023] Open
Abstract
BACKGROUND Identifying prediagnostic neurodegenerative disease is a critical issue in neurodegenerative disease research, and Alzheimer's disease (AD) in particular, to identify populations suitable for preventive and early disease-modifying trials. Evidence from genetic and other studies suggests the neurodegeneration of Alzheimer's disease measured by brain atrophy starts many years before diagnosis, but it is unclear whether these changes can be used to reliably detect prediagnostic sporadic disease. METHODS We trained a Bayesian machine learning neural network model to generate a neuroimaging phenotype and AD score representing the probability of AD using structural MRI data in the Alzheimer's Disease Neuroimaging Initiative (ADNI) Cohort (cut-off 0.5, AUC 0.92, PPV 0.90, NPV 0.93). We go on to validate the model in an independent real-world dataset of the National Alzheimer's Coordinating Centre (AUC 0.74, PPV 0.65, NPV 0.80) and demonstrate the correlation of the AD-score with cognitive scores in those with an AD-score above 0.5. We then apply the model to a healthy population in the UK Biobank study to identify a cohort at risk for Alzheimer's disease. RESULTS We show that the cohort with a neuroimaging Alzheimer's phenotype has a cognitive profile in keeping with Alzheimer's disease, with strong evidence for poorer fluid intelligence, and some evidence of poorer numeric memory, reaction time, working memory, and prospective memory. We found some evidence in the AD-score positive cohort for modifiable risk factors of hypertension and smoking. CONCLUSIONS This approach demonstrates the feasibility of using AI methods to identify a potentially prediagnostic population at high risk for developing sporadic Alzheimer's disease.
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Affiliation(s)
- Tiago Azevedo
- Department of Computer Science and Technology, University of Cambridge, Cambridge, UK
| | - Richard A I Bethlehem
- Brain Mapping Unit, Department of Psychiatry, University of Cambridge, Cambridge, UK
- Autism Research Centre, Department of Psychiatry, University of Cambridge, Cambridge, UK
| | - David J Whiteside
- Department of Clinical Neurosciences and Cambridge University Hospitals NHS Trust, University of Cambridge, Cambridge, UK
| | - Nol Swaddiwudhipong
- Department of Clinical Neurosciences and Cambridge University Hospitals NHS Trust, University of Cambridge, Cambridge, UK
| | - James B Rowe
- Department of Clinical Neurosciences and Cambridge University Hospitals NHS Trust, University of Cambridge, Cambridge, UK
| | - Pietro Lió
- Department of Computer Science and Technology, University of Cambridge, Cambridge, UK
| | - Timothy Rittman
- Department of Clinical Neurosciences and Cambridge University Hospitals NHS Trust, University of Cambridge, Cambridge, UK.
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13
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Noh JH, Kim JH, Yang HD. Classification of Alzheimer's Progression Using fMRI Data. SENSORS (BASEL, SWITZERLAND) 2023; 23:6330. [PMID: 37514624 PMCID: PMC10383967 DOI: 10.3390/s23146330] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 06/27/2023] [Accepted: 06/28/2023] [Indexed: 07/30/2023]
Abstract
In the last three decades, the development of functional magnetic resonance imaging (fMRI) has significantly contributed to the understanding of the brain, functional brain mapping, and resting-state brain networks. Given the recent successes of deep learning in various fields, we propose a 3D-CNN-LSTM classification model to diagnose health conditions with the following classes: condition normal (CN), early mild cognitive impairment (EMCI), late mild cognitive impairment (LMCI), and Alzheimer's disease (AD). The proposed method employs spatial and temporal feature extractors, wherein the former utilizes a U-Net architecture to extract spatial features, and the latter utilizes long short-term memory (LSTM) to extract temporal features. Prior to feature extraction, we performed four-step pre-processing to remove noise from the fMRI data. In the comparative experiments, we trained each of the three models by adjusting the time dimension. The network exhibited an average accuracy of 96.4% when using five-fold cross-validation. These results show that the proposed method has high potential for identifying the progression of Alzheimer's by analyzing 4D fMRI data.
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Affiliation(s)
- Ju-Hyeon Noh
- Department of Computer Engineering, University of Chosun, Gwangju 61452, Republic of Korea
| | - Jun-Hyeok Kim
- Department of Computer Engineering, University of Chosun, Gwangju 61452, Republic of Korea
| | - Hee-Deok Yang
- Department of Computer Engineering, University of Chosun, Gwangju 61452, Republic of Korea
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14
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Beaulac C, Wu S, Gibson E, Miranda MF, Cao J, Rocha L, Beg MF, Nathoo FS. Neuroimaging feature extraction using a neural network classifier for imaging genetics. BMC Bioinformatics 2023; 24:271. [PMID: 37391692 DOI: 10.1186/s12859-023-05394-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 06/21/2023] [Indexed: 07/02/2023] Open
Abstract
BACKGROUND Dealing with the high dimension of both neuroimaging data and genetic data is a difficult problem in the association of genetic data to neuroimaging. In this article, we tackle the latter problem with an eye toward developing solutions that are relevant for disease prediction. Supported by a vast literature on the predictive power of neural networks, our proposed solution uses neural networks to extract from neuroimaging data features that are relevant for predicting Alzheimer's Disease (AD) for subsequent relation to genetics. The neuroimaging-genetic pipeline we propose is comprised of image processing, neuroimaging feature extraction and genetic association steps. We present a neural network classifier for extracting neuroimaging features that are related with the disease. The proposed method is data-driven and requires no expert advice or a priori selection of regions of interest. We further propose a multivariate regression with priors specified in the Bayesian framework that allows for group sparsity at multiple levels including SNPs and genes. RESULTS We find the features extracted with our proposed method are better predictors of AD than features used previously in the literature suggesting that single nucleotide polymorphisms (SNPs) related to the features extracted by our proposed method are also more relevant for AD. Our neuroimaging-genetic pipeline lead to the identification of some overlapping and more importantly some different SNPs when compared to those identified with previously used features. CONCLUSIONS The pipeline we propose combines machine learning and statistical methods to benefit from the strong predictive performance of blackbox models to extract relevant features while preserving the interpretation provided by Bayesian models for genetic association. Finally, we argue in favour of using automatic feature extraction, such as the method we propose, in addition to ROI or voxelwise analysis to find potentially novel disease-relevant SNPs that may not be detected when using ROIs or voxels alone.
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Affiliation(s)
- Cédric Beaulac
- School of Engineering Science, Simon Fraser University, Burnaby, Canada.
- Department of Mathematics and Statistics, University of Victoria, Victoria, Canada.
| | - Sidi Wu
- Department of Statistics and Actuarial Sciences, Simon Fraser University, Burnaby, Canada
| | - Erin Gibson
- School of Engineering Science, Simon Fraser University, Burnaby, Canada
| | - Michelle F Miranda
- Department of Mathematics and Statistics, University of Victoria, Victoria, Canada
| | - Jiguo Cao
- Department of Statistics and Actuarial Sciences, Simon Fraser University, Burnaby, Canada
| | - Leno Rocha
- Department of Mathematics and Statistics, University of Victoria, Victoria, Canada
| | - Mirza Faisal Beg
- School of Engineering Science, Simon Fraser University, Burnaby, Canada
| | - Farouk S Nathoo
- Department of Mathematics and Statistics, University of Victoria, Victoria, Canada
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15
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Illakiya T, Ramamurthy K, Siddharth MV, Mishra R, Udainiya A. AHANet: Adaptive Hybrid Attention Network for Alzheimer's Disease Classification Using Brain Magnetic Resonance Imaging. Bioengineering (Basel) 2023; 10:714. [PMID: 37370645 PMCID: PMC10294993 DOI: 10.3390/bioengineering10060714] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Revised: 05/27/2023] [Accepted: 06/03/2023] [Indexed: 06/29/2023] Open
Abstract
Alzheimer's disease (AD) is a progressive neurological problem that causes brain atrophy and affects the memory and thinking skills of an individual. Accurate detection of AD has been a challenging research topic for a long time in the area of medical image processing. Detecting AD at its earliest stage is crucial for the successful treatment of the disease. The proposed Adaptive Hybrid Attention Network (AHANet) has two attention modules, namely Enhanced Non-Local Attention (ENLA) and Coordinate Attention. These modules extract global-level features and local-level features separately from the brain Magnetic Resonance Imaging (MRI), thereby boosting the feature extraction power of the network. The ENLA module extracts spatial and contextual information on a global scale while also capturing important long-range dependencies. The Coordinate Attention module captures local features from the input images. It embeds positional information into the channel attention mechanism for enhanced feature extraction. Moreover, an Adaptive Feature Aggregation (AFA) module is proposed to fuse features from the global and local levels in an effective way. As a result of incorporating the above architectural enhancements into the DenseNet architecture, the proposed network exhibited better performance compared to the existing works. The proposed network was trained and tested on the ADNI dataset, yielding a classification accuracy of 98.53%.
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Affiliation(s)
- T. Illakiya
- School of Computer Science and Engineering, Vellore Institute of Technology, Chennai 600127, India;
| | - Karthik Ramamurthy
- Centre for Cyber Physical Systems, Vellore Institute of Technology, Chennai 600127, India
| | - M. V. Siddharth
- School of Mechanical Engineering, Vellore Institute of Technology, Chennai 600127, India;
| | - Rashmi Mishra
- School of Electronics Engineering, Vellore Institute of Technology, Chennai 600127, India; (R.M.); (A.U.)
| | - Ashish Udainiya
- School of Electronics Engineering, Vellore Institute of Technology, Chennai 600127, India; (R.M.); (A.U.)
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16
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Li H, Tan Y, Miao J, Liang P, Gong J, He H, Jiao Y, Zhang F, Xing Y, Wu D. Attention-based and micro designed EfficientNetB2 for diagnosis of Alzheimer’s disease. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2023.104571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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17
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Illakiya T, Karthik R. Automatic Detection of Alzheimer's Disease using Deep Learning Models and Neuro-Imaging: Current Trends and Future Perspectives. Neuroinformatics 2023; 21:339-364. [PMID: 36884142 DOI: 10.1007/s12021-023-09625-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/16/2023] [Indexed: 03/09/2023]
Abstract
Deep learning algorithms have a huge influence on tackling research issues in the field of medical image processing. It acts as a vital aid for the radiologists in producing accurate results toward effective disease diagnosis. The objective of this research is to highlight the importance of deep learning models in the detection of Alzheimer's Disease (AD). The main objective of this research is to analyze different deep learning methods used for detecting AD. This study examines 103 research articles published in various research databases. These articles have been selected based on specific criteria to find the most relevant findings in the field of AD detection. The review was carried out based on deep learning techniques such as Convolutional Neural Networks (CNNs), Recurrent Neural Networks (RNNs), and Transfer Learning (TL). To propose accurate methods for the detection, segmentation, and severity grading of AD, the radiological features need to be examined in greater depth. This review attempts to analyze different deep learning methods applied for AD detection using neuroimaging modalities like Positron Emission Tomography (PET), Magnetic Resonance Imaging (MRI), etc. The focus of this review is restricted to deep learning works based on radiological imaging data for AD detection. There are a few works that have utilized other biomarkers to understand the effect of AD. Also, articles published in English were alone considered for analysis. This work concludes by highlighting the key research issues towards effective AD detection. Though several methods have yielded promising results in AD detection, the progression from Mild Cognitive Impairment (MCI) to AD need to be analyzed in greater depth using DL models.
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Affiliation(s)
- T Illakiya
- School of Computer Science and Engineering, Vellore Institute of Technology, Chennai, India
| | - R Karthik
- Centre for Cyber Physical Systems, School of Electronics Engineering, Vellore Institute of Technology, Chennai, India.
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18
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Anush A, Rohini G, Nicola S, WalaaEldin EM, Eranga U. Deep-learning-based ensemble method for fully automated detection of renal masses on magnetic resonance images. J Med Imaging (Bellingham) 2023; 10:024501. [PMID: 36950139 PMCID: PMC10026851 DOI: 10.1117/1.jmi.10.2.024501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Accepted: 02/22/2023] [Indexed: 03/24/2023] Open
Abstract
Purpose Accurate detection of small renal masses (SRM) is a fundamental step for automated classification of benign and malignant or indolent and aggressive renal tumors. Magnetic resonance image (MRI) may outperform computed tomography (CT) for SRM subtype differentiation due to improved tissue characterization, but is less explored compared to CT. The objective of this study is to autonomously detect SRM on contrast-enhanced magnetic resonance images (CE-MRI). Approach In this paper, we described a novel, fully automated methodology for accurate detection and localization of SRM on CE-MRI. We first determine the kidney boundaries using a U-Net convolutional neural network. We then search for SRM within the localized kidney regions using a mixture-of-experts ensemble model based on the U-Net architecture. Our dataset contained CE-MRI scans of 118 patients with different solid kidney tumor subtypes including renal cell carcinomas, oncocytomas, and fat-poor renal angiomyolipoma. We evaluated the proposed model on the entire CE-MRI dataset using 5-fold cross validation. Results The developed algorithm reported a Dice similarity coefficient of 91.20 ± 5.41 % (mean ± standard deviation) for kidney segmentation from 118 volumes consisting of 25,025 slices. Our proposed ensemble model for SRM detection yielded a recall and precision of 86.2% and 83.3% on the entire CE-MRI dataset, respectively. Conclusions We described a deep-learning-based method for fully automated SRM detection using CE-MR images, which has not been studied previously. The results are clinically important as SRM localization is a pre-step for fully automated diagnosis of SRM subtypes.
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Affiliation(s)
- Agarwal Anush
- University of Guelph, School of Engineering, Guelph, Ontario, Canada
| | - Gaikar Rohini
- University of Guelph, School of Engineering, Guelph, Ontario, Canada
| | - Schieda Nicola
- University of Ottawa, Department of Radiology, Ottawa, Ontario, Canada
| | | | - Ukwatta Eranga
- University of Guelph, School of Engineering, Guelph, Ontario, Canada
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19
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Nguyen HD, Clément M, Mansencal B, Coupé P. Towards better interpretable and generalizable AD detection using collective artificial intelligence. Comput Med Imaging Graph 2023; 104:102171. [PMID: 36640484 DOI: 10.1016/j.compmedimag.2022.102171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Revised: 12/24/2022] [Accepted: 12/24/2022] [Indexed: 01/03/2023]
Abstract
Alzheimer's Disease is the most common cause of dementia. Accurate diagnosis and prognosis of this disease are essential to design an appropriate treatment plan, increasing the life expectancy of the patient. Intense research has been conducted on the use of machine learning to identify Alzheimer's Disease from neuroimaging data, such as structural magnetic resonance imaging. In recent years, advances of deep learning in computer vision suggest a new research direction for this problem. Current deep learning-based approaches in this field, however, have a number of drawbacks, including the interpretability of model decisions, a lack of generalizability information and a lower performance compared to traditional machine learning techniques. In this paper, we design a two-stage framework to overcome these limitations. In the first stage, an ensemble of 125 U-Nets is used to grade the input image, producing a 3D map that reflects the disease severity at voxel-level. This map can help to localize abnormal brain areas caused by the disease. In the second stage, we model a graph per individual using the generated grading map and other information about the subject. We propose to use a graph convolutional neural network classifier for the final classification. As a result, our framework demonstrates comparative performance to the state-of-the-art methods in different datasets for both diagnosis and prognosis. We also demonstrate that the use of a large ensemble of U-Nets offers a better generalization capacity for our framework.
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Affiliation(s)
- Huy-Dung Nguyen
- Univ. Bordeaux, CNRS, Bordeaux INP, LaBRI, UMR 5800, 33400 Talence, France.
| | - Michaël Clément
- Univ. Bordeaux, CNRS, Bordeaux INP, LaBRI, UMR 5800, 33400 Talence, France
| | - Boris Mansencal
- Univ. Bordeaux, CNRS, Bordeaux INP, LaBRI, UMR 5800, 33400 Talence, France
| | - Pierrick Coupé
- Univ. Bordeaux, CNRS, Bordeaux INP, LaBRI, UMR 5800, 33400 Talence, France
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20
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Pallawi S, Singh DK. Review and analysis of deep neural network models for Alzheimer's disease classification using brain medical resonance imaging. COGNITIVE COMPUTATION AND SYSTEMS 2023. [DOI: 10.1049/ccs2.12072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023] Open
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21
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Zhao Z, Chuah JH, Lai KW, Chow CO, Gochoo M, Dhanalakshmi S, Wang N, Bao W, Wu X. Conventional machine learning and deep learning in Alzheimer's disease diagnosis using neuroimaging: A review. Front Comput Neurosci 2023; 17:1038636. [PMID: 36814932 PMCID: PMC9939698 DOI: 10.3389/fncom.2023.1038636] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Accepted: 01/13/2023] [Indexed: 02/08/2023] Open
Abstract
Alzheimer's disease (AD) is a neurodegenerative disorder that causes memory degradation and cognitive function impairment in elderly people. The irreversible and devastating cognitive decline brings large burdens on patients and society. So far, there is no effective treatment that can cure AD, but the process of early-stage AD can slow down. Early and accurate detection is critical for treatment. In recent years, deep-learning-based approaches have achieved great success in Alzheimer's disease diagnosis. The main objective of this paper is to review some popular conventional machine learning methods used for the classification and prediction of AD using Magnetic Resonance Imaging (MRI). The methods reviewed in this paper include support vector machine (SVM), random forest (RF), convolutional neural network (CNN), autoencoder, deep learning, and transformer. This paper also reviews pervasively used feature extractors and different types of input forms of convolutional neural network. At last, this review discusses challenges such as class imbalance and data leakage. It also discusses the trade-offs and suggestions about pre-processing techniques, deep learning, conventional machine learning methods, new techniques, and input type selection.
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Affiliation(s)
- Zhen Zhao
- Department of Electrical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur, Malaysia
| | - Joon Huang Chuah
- Department of Electrical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur, Malaysia,*Correspondence: Joon Huang Chuah ✉
| | - Khin Wee Lai
- Department of Biomedical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur, Malaysia,Khin Wee Lai ✉
| | - Chee-Onn Chow
- Department of Electrical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur, Malaysia
| | - Munkhjargal Gochoo
- Department of Computer Science and Software Engineering, United Arab Emirates University, Al Ain, United Arab Emirates
| | - Samiappan Dhanalakshmi
- Department of Electronics and Communication Engineering, SRM Institute of Science and Technology, Chennai, India
| | - Na Wang
- School of Automation, Guangdong Polytechnic Normal University, Guangzhou, China
| | - Wei Bao
- China Electronics Standardization Institute, Beijing, China,Wei Bao ✉
| | - Xiang Wu
- School of Medical Information Engineering, Xuzhou Medical University, Xuzhou, China
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22
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Liu F, Yuan S, Li W, Xu Q, Sheng B. Patch-based deep multi-modal learning framework for Alzheimer’s disease diagnosis using multi-view neuroimaging. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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23
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Bansal D, Khanna K, Chhikara R, Dua RK, Malhotra R. BoF-SVM-based data intelligence model for detecting dementia. INTELLIGENT DECISION TECHNOLOGIES 2023. [DOI: 10.3233/idt-220256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
Abstract
Dementia is a brain condition that impairs the cognitive abilities of an individual. Mild cognitive impairment is a mediator phase of healthy and dementia controls. The motivation of this study is to predict dementia using magnetic resonance imaging data, which is significant for the diagnosis of normal control and dementia patients. The proposed model leverages effective methods like Discrete Wavelet Transform, Bag of Features, and Support Vector Machine. The four wavelets haar, Daubechies, symlets, and coiflets are used for image compression. The results of the proposed data intelligence model are promising in terms of accuracy which is 92.32% which is better than the recently proposed models. Also, the proposed data intelligence model is compared with the models which may use curvelet transform, and shearlet transform and with the methods which have gone without using DWT transforms. The comparisons have also been made with the models that have used other prevalent techniques like Principal Component Analysis, Fisher Discriminant Ratio, and Gray Level Co-occurrence Matrix. The outcomes support the usage of each technique in the suggested data intelligence paradigm.
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Affiliation(s)
- Deepika Bansal
- Department of Computer Science and Engineering, The NorthCap University, Gurugram, India
| | - Kavita Khanna
- Delhi Skill and Entrepreneurship University, New Delhi, India
| | - Rita Chhikara
- Department of Computer Science and Engineering, The NorthCap University, Gurugram, India
| | | | - Rajeev Malhotra
- Department of Neurosurgery, Max Super Speciality Hospital, New Delhi, India
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24
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Khan R, Akbar S, Mehmood A, Shahid F, Munir K, Ilyas N, Asif M, Zheng Z. A transfer learning approach for multiclass classification of Alzheimer's disease using MRI images. Front Neurosci 2023; 16:1050777. [PMID: 36699527 PMCID: PMC9869687 DOI: 10.3389/fnins.2022.1050777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Accepted: 12/05/2022] [Indexed: 01/11/2023] Open
Abstract
Alzheimer's is an acute degenerative disease affecting the elderly population all over the world. The detection of disease at an early stage in the absence of a large-scale annotated dataset is crucial to the clinical treatment for the prevention and early detection of Alzheimer's disease (AD). In this study, we propose a transfer learning base approach to classify various stages of AD. The proposed model can distinguish between normal control (NC), early mild cognitive impairment (EMCI), late mild cognitive impairment (LMCI), and AD. In this regard, we apply tissue segmentation to extract the gray matter from the MRI scans obtained from the Alzheimer's Disease National Initiative (ADNI) database. We utilize this gray matter to tune the pre-trained VGG architecture while freezing the features of the ImageNet database. It is achieved through the addition of a layer with step-wise freezing of the existing blocks in the network. It not only assists transfer learning but also contributes to learning new features efficiently. Extensive experiments are conducted and results demonstrate the superiority of the proposed approach.
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Affiliation(s)
- Rizwan Khan
- Department of Computer Science and Mathematics, Zhejiang Normal University, Jinhua, China,*Correspondence: Rizwan Khan ✉
| | - Saeed Akbar
- School of Computer Science, Huazhong University of Science and Technology, Wuhan, China
| | - Atif Mehmood
- Division of Biomedical Imaging, Department of Biomedical Engineering and Health Systems, KTH Royal Institute of Technology, Stockholm, Sweden,Department of Computer Science, National University of Modern Languages, Islamabad, Pakistan
| | - Farah Shahid
- Department of Computer Science, University of Agriculture, Sub Campus Burewala-Vehari, Faisalabad, Pakistan
| | - Khushboo Munir
- Department of Radiology and Diagnostic Imaging, University of Alberta, Edmonton, AB, Canada
| | - Naveed Ilyas
- Department of Physics, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
| | - M. Asif
- Department of Radiology, Emory Brain Health Center-Neurosurgery, School of Medicine, Emory University, Atlanta, GA, United States
| | - Zhonglong Zheng
- Department of Computer Science and Mathematics, Zhejiang Normal University, Jinhua, China,Key Laboratory of Intelligent Education Technology and Application of Zhejiang Province, Zhejiang Normal University, Jinhua, China
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Abbas Q, Hussain A, Baig AR. CAD-ALZ: A Blockwise Fine-Tuning Strategy on Convolutional Model and Random Forest Classifier for Recognition of Multistage Alzheimer's Disease. Diagnostics (Basel) 2023; 13:167. [PMID: 36611459 PMCID: PMC9818479 DOI: 10.3390/diagnostics13010167] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Revised: 12/24/2022] [Accepted: 12/31/2022] [Indexed: 01/05/2023] Open
Abstract
Mental deterioration or Alzheimer's (ALZ) disease is progressive and causes both physical and mental dependency. There is a need for a computer-aided diagnosis (CAD) system that can help doctors make an immediate decision. (1) Background: Currently, CAD systems are developed based on hand-crafted features, machine learning (ML), and deep learning (DL) techniques. Those CAD systems frequently require domain-expert knowledge and massive datasets to extract deep features or model training, which causes problems with class imbalance and overfitting. Additionally, there are still manual approaches used by radiologists due to the lack of dataset availability and to train the model with cost-effective computation. Existing works rely on performance improvement by neglecting the problems of the limited dataset, high computational complexity, and unavailability of lightweight and efficient feature descriptors. (2) Methods: To address these issues, a new approach, CAD-ALZ, is developed by extracting deep features through a ConvMixer layer with a blockwise fine-tuning strategy on a very small original dataset. At first, we apply the data augmentation method to images to increase the size of datasets. In this study, a blockwise fine-tuning strategy is employed on the ConvMixer model to detect robust features. Afterwards, a random forest (RF) is used to classify ALZ disease stages. (3) Results: The proposed CAD-ALZ model obtained significant results by using six evaluation metrics such as the F1-score, Kappa, accuracy, precision, sensitivity, and specificity. The CAD-ALZ model performed with a sensitivity of 99.69% and an F1-score of 99.61%. (4) Conclusions: The suggested CAD-ALZ approach is a potential technique for clinical use and computational efficiency compared to state-of-the-art approaches. The CAD-ALZ model code is freely available on GitHub for the scientific community.
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Affiliation(s)
- Qaisar Abbas
- College of Computer and Information Sciences, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 11432, Saudi Arabia
| | - Ayyaz Hussain
- Department of Computer Science, Quaid-i-Azam University, Islamabad 44000, Pakistan
| | - Abdul Rauf Baig
- College of Computer and Information Sciences, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 11432, Saudi Arabia
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Krishnapriya S, Karuna Y. Pre-trained deep learning models for brain MRI image classification. Front Hum Neurosci 2023; 17:1150120. [PMID: 37151901 PMCID: PMC10157370 DOI: 10.3389/fnhum.2023.1150120] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2023] [Accepted: 03/06/2023] [Indexed: 05/09/2023] Open
Abstract
Brain tumors are serious conditions caused by uncontrolled and abnormal cell division. Tumors can have devastating implications if not accurately and promptly detected. Magnetic resonance imaging (MRI) is one of the methods frequently used to detect brain tumors owing to its excellent resolution. In the past few decades, substantial research has been conducted in the field of classifying brain images, ranging from traditional methods to deep-learning techniques such as convolutional neural networks (CNN). To accomplish classification, machine-learning methods require manually created features. In contrast, CNN achieves classification by extracting visual features from unprocessed images. The size of the training dataset had a significant impact on the features that CNN extracts. The CNN tends to overfit when its size is small. Deep CNNs (DCNN) with transfer learning have therefore been developed. The aim of this work was to investigate the brain MR image categorization potential of pre-trained DCNN VGG-19, VGG-16, ResNet50, and Inception V3 models using data augmentation and transfer learning techniques. Validation of the test set utilizing accuracy, recall, Precision, and F1 score showed that the pre-trained VGG-19 model with transfer learning exhibited the best performance. In addition, these methods offer an end-to-end classification of raw images without the need for manual attribute extraction.
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Teodoro AAM, Silva DH, Saadi M, Okey OD, Rosa RL, Otaibi SA, Rodríguez DZ. An Analysis of Image Features Extracted by CNNs to Design Classification Models for COVID-19 and Non-COVID-19. JOURNAL OF SIGNAL PROCESSING SYSTEMS 2023; 95:101-113. [PMID: 34777680 PMCID: PMC8572648 DOI: 10.1007/s11265-021-01714-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Revised: 10/05/2021] [Accepted: 10/13/2021] [Indexed: 05/11/2023]
Abstract
The SARS-CoV-2 virus causes a respiratory disease in humans, known as COVID-19. The confirmatory diagnostic of this disease occurs through the real-time reverse transcription and polymerase chain reaction test (RT-qPCR). However, the period of obtaining the results limits the application of the mass test. Thus, chest X-ray computed tomography (CT) images are analyzed to help diagnose the disease. However, during an outbreak of a disease that causes respiratory problems, radiologists may be overwhelmed with analyzing medical images. In the literature, some studies used feature extraction techniques based on CNNs, with classification models to identify COVID-19 and non-COVID-19. This work compare the performance of applying pre-trained CNNs in conjunction with classification methods based on machine learning algorithms. The main objective is to analyze the impact of the features extracted by CNNs, in the construction of models to classify COVID-19 and non-COVID-19. A SARS-CoV-2 CT data-set is used in experimental tests. The CNNs implemented are visual geometry group (VGG-16 and VGG-19), inception V3 (IV3), and EfficientNet-B0 (EB0). The classification methods were k-nearest neighbor (KNN), support vector machine (SVM), and explainable deep neural networks (xDNN). In the experiments, the best results were obtained by the EfficientNet model used to extract data and the SVM with an RBF kernel. This approach achieved an average performance of 0.9856 in the precision macro, 0.9853 in the sensitivity macro, 0.9853 in the specificity macro, and 0.9853 in the F1 score macro.
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Affiliation(s)
| | - Douglas H. Silva
- Department of Computer Science, Federal University of Lavras, Lavras, MG Brazil
| | - Muhammad Saadi
- Department of Electrical Engineering, University of Central Punjab, Lahore, 54000 Pakistan
| | - Ogobuchi D. Okey
- Department of Systems Engineering and Automation, Federal University of Lavras, Lavras, MG Brazil
| | - Renata L. Rosa
- Department of Computer Science, Federal University of Lavras, Lavras, MG Brazil
| | - Sattam Al Otaibi
- Department of Electrical Engineering, College of Engineering, Taif University, Taif, 21944 Saudi Arabia
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28
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Francis A, Pandian IA, Anitha J. A boon to aged society: Early diagnosis of Alzheimer's disease-An opinion. Front Public Health 2022; 10:1076472. [PMID: 36530651 PMCID: PMC9751990 DOI: 10.3389/fpubh.2022.1076472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Accepted: 11/14/2022] [Indexed: 12/04/2022] Open
Affiliation(s)
- Ambily Francis
- Department of Electronics and Communication Engineering, Karunya Institute of Technology and Sciences, Coimbatore, India,Department of Electronics and Communication Engineering, Sahrdaya College of Engineering and Technology, Kodakara, India
| | - Immanuel Alex Pandian
- Department of Electronics and Communication Engineering, Karunya Institute of Technology and Sciences, Coimbatore, India
| | - J. Anitha
- Department of Computer Science and Engineering, Karunya Institute of Technology and Sciences, Coimbatore, India,*Correspondence: J. Anitha
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29
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Wang R, Fu G, Li J, Pei Y. Diagnosis after zooming in: A multilabel classification model by imitating doctor reading habits to diagnose brain diseases. Med Phys 2022; 49:7054-7070. [PMID: 35880443 DOI: 10.1002/mp.15871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Revised: 03/18/2022] [Accepted: 06/28/2022] [Indexed: 12/13/2022] Open
Abstract
PURPOSE Computed tomography (CT) has the advantages of being low cost and noninvasive and is a primary diagnostic method for brain diseases. However, it is a challenge for junior radiologists to diagnose CT images accurately and comprehensively. It is necessary to build a system that can help doctors diagnose and provide an explanation of the predictions. Despite the success of deep learning algorithms in the field of medical image analysis, the task of brain disease classification still faces challenges: Researchers lack attention to complex manual labeling requirements and the incompleteness of prediction explanations. More importantly, most studies only measure the performance of the algorithm, but do not measure the effectiveness of the algorithm in the actual diagnosis of doctors. METHODS In this paper, we propose a model called DrCT2 that can detect brain diseases without using image-level labels and provide a more comprehensive explanation at both the slice and sequence levels. This model achieves reliable performance by imitating human expert reading habits: targeted scaling of primary images from the full slice scans and observation of suspicious lesions for diagnosis. We evaluated our model on two open-access data sets: CQ500 and the RSNA Intracranial Hemorrhage Detection Challenge. In addition, we defined three tasks to comprehensively evaluate model interpretability by measuring whether the algorithm can select key images with lesions. To verify the algorithm from the perspective of practical application, three junior radiologists were invited to participate in the experiments, comparing the effects before and after human-computer cooperation in different aspects. RESULTS The method achieved F1-scores of 0.9370 on CQ500 and 0.8700 on the RSNA data set. The results show that our model has good interpretability under the premise of good performance. Human radiologist evaluation experiments have proven that our model can effectively improve the accuracy of the diagnosis and improve efficiency. CONCLUSIONS We proposed a model that can simultaneously detect multiple brain diseases. The report generated by the model can assist doctors in avoiding missed diagnoses, and it has good clinical application value.
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Affiliation(s)
- Ruiqian Wang
- Faculty of Information Technology, Beijing University of Technology, Beijing, China
| | - Guanghui Fu
- Sorbonne Université, Institut du Cerveau - Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié Salpêtrière, F-75013, Paris, France
| | - Jianqiang Li
- Faculty of Information Technology, Beijing University of Technology, Beijing, China
| | - Yan Pei
- Computer Science Division, University of Aizu, Aizuwakamatsu, Japan
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Vasdev D, Gupta V, Shubham S, Chaudhary A, Jain N, Salimi M, Ahmadian A. Periapical dental X-ray image classification using deep neural networks. ANNALS OF OPERATIONS RESEARCH 2022; 326:1-29. [PMID: 36157976 PMCID: PMC9483455 DOI: 10.1007/s10479-022-04961-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 08/29/2022] [Indexed: 06/16/2023]
Abstract
This paper studies the problem of detection of dental diseases. Dental problems affect the vast majority of the world's population. Caries, RCT (Root Canal Treatment), Abscess, Bone Loss, and missing teeth are some of the most common dental conditions that affect people of all ages all over the world. Delayed or incorrect diagnosis may result in mistreatment, affecting not only an individual's oral health but also his or her overall health, thereby making it an important research area in medicine and engineering. We propose a pipelined Deep Neural Network (DNN) approach to detect healthy and non-healthy periapical dental X-ray images. Even a minor enhancement or improvement in existing techniques can go a long way in providing significant health benefits in the medical field. This paper has made a successful attempt to contribute a different type of pipelined approach using AlexNet in this regard. The approach is trained on a large dataset of 16,000 dental X-ray images, correctly identifying healthy and non-healthy X-ray images. We use an optimized Convolutional Neural Networks and three state-of-the-art DNN models, namely Res-Net-18, ResNet-34, and AlexNet for disease classification. In our study, the AlexNet model outperforms the other models with an accuracy of 0.852. The precision, recall and F1 scores of AlexNet also surpass the other models with a score of 0.850 across all metrics. The area under ROC curve also signifies that both the false-positive rate and false-negative rate are low. We conclude that even with a big data set and raw X-ray pictures, the AlexNet model generalizes effectively to previously unseen data and can aid in the diagnosis of a variety of dental diseases.
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Affiliation(s)
- Dipit Vasdev
- Department of Computer Science and Engineering, Bharati Vidyapeeth’s College of Engineering, New Delhi, India
| | - Vedika Gupta
- Jindal Global Business School, O.P. Jindal Global University, Sonipat, Haryana 131001 India
| | - Shubham Shubham
- Department of Computer Science and Engineering, Bharati Vidyapeeth’s College of Engineering, New Delhi, India
| | - Ankit Chaudhary
- Department of Computer Science and Engineering, Bharati Vidyapeeth’s College of Engineering, New Delhi, India
| | - Nikita Jain
- Department of Computer Science and Engineering, Bharati Vidyapeeth’s College of Engineering, New Delhi, India
| | - Mehdi Salimi
- Department of Mathematics and Statistics, St. Francis Xavier University, Antigonish, NS Canada
- Center for Dynamics, Faculty of Mathematics, Technische Universität Dresden, Dresden, Germany
| | - Ali Ahmadian
- Department of Law, Economics and Human Sciences and Decisions Lab, Mediterranea University of Reggio Calabria, 89125 Reggio Calabria, Italy
- Department of Mathematics, Near East University, Nicosia, TRNC, Mersin 10, Turkey
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31
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Gupta V, Jain N, Sachdeva J, Gupta M, Mohan S, Bajuri MY, Ahmadian A. Improved COVID-19 detection with chest x-ray images using deep learning. MULTIMEDIA TOOLS AND APPLICATIONS 2022; 81:37657-37680. [PMID: 35968409 PMCID: PMC9361266 DOI: 10.1007/s11042-022-13509-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 10/18/2021] [Accepted: 07/13/2022] [Indexed: 06/15/2023]
Abstract
The novel coronavirus disease, which originated in Wuhan, developed into a severe public health problem worldwide. Immense stress in the society and health department was advanced due to the multiplying numbers of COVID carriers and deaths. This stress can be lowered by performing a high-speed diagnosis for the disease, which can be a crucial stride for opposing the deadly virus. A good large amount of time is consumed in the diagnosis. Some applications that use medical images like X-Rays or CT-Scans can pace up the time used in diagnosis. Hence, this paper aims to create a computer-aided-design system that will use the chest X-Ray as input and further classify it into one of the three classes, namely COVID-19, viral Pneumonia, and healthy. Since the COVID-19 positive chest X-Rays dataset was low, we have exploited four pre-trained deep neural networks (DNNs) to find the best for this system. The dataset consisted of 2905 images with 219 COVID-19 cases, 1341 healthy cases, and 1345 viral pneumonia cases. Out of these images, the models were evaluated on 30 images of each class for the testing, while the rest of them were used for training. It is observed that AlexNet attained an accuracy of 97.6% with an average precision, recall, and F1 score of 0.98, 0.97, and 0.98, respectively.
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Affiliation(s)
- Vedika Gupta
- Jindal Global Business School, O.P. Jindal Global University, Haryana, India
| | - Nikita Jain
- Bharati Vidyapeeth’s College of Engineering, Delhi, India
| | - Jatin Sachdeva
- Bharati Vidyapeeth’s College of Engineering, Delhi, India
| | - Mudit Gupta
- Bharati Vidyapeeth’s College of Engineering, Delhi, India
| | - Senthilkumar Mohan
- School of Information Technology and Engineering, Vellore Institute of Technology, Vellore, India
| | - Mohd Yazid Bajuri
- Department of Orthopaedics and Traumatology, Faculty of Medicine, Universiti Kebangsaan Malaysia (UKM), Kuala Lumpur, Malaysia
| | - Ali Ahmadian
- Decision Lab, Mediterranea University of Reggio Calabria, 89124 Reggio Calabria, Italy
- Department of Mathematics, Near East University, Nicosia, TRNC, Mersin 10, Turkey
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32
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Chen T, Su P, Shen Y, Chen L, Mahmud M, Zhao Y, Antoniou G. A dominant set-informed interpretable fuzzy system for automated diagnosis of dementia. Front Neurosci 2022; 16:867664. [PMID: 35979331 PMCID: PMC9376621 DOI: 10.3389/fnins.2022.867664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Accepted: 07/05/2022] [Indexed: 11/13/2022] Open
Abstract
Dementia is an incurable neurodegenerative disease primarily affecting the older population, for which the World Health Organisation has set to promoting early diagnosis and timely management as one of the primary goals for dementia care. While a range of popular machine learning algorithms and their variants have been applied for dementia diagnosis, fuzzy systems, which have been known effective in dealing with uncertainty and offer to explicitly reason how a diagnosis can be inferred, sporadically appear in recent literature. Given the advantages of a fuzzy rule-based model, which could potentially result in a clinical decision support system that offers understandable rules and a transparent inference process to support dementia diagnosis, this paper proposes a novel fuzzy inference system by adapting the concept of dominant sets that arise from the study of graph theory. A peeling-off strategy is used to iteratively extract from the constructed edge-weighted graph a collection of dominant sets. Each dominant set is further converted into a parameterized fuzzy rule, which is finally optimized in a supervised adaptive network-based fuzzy inference framework. An illustrative example is provided that demonstrates the interpretable rules and the transparent reasoning process of reaching a decision. Further systematic experiments conducted on data from the Open Access Series of Imaging Studies (OASIS) repository, also validate its superior performance over alternative methods.
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Affiliation(s)
- Tianhua Chen
- Department of Computer Science, School of Computing and Engineering, University of Huddersfield, Huddersfield, United Kingdom
| | - Pan Su
- School of Control and Computer Engineering, North China Electric Power University, Beijing, China
| | - Yinghua Shen
- School of Economics and Business Administration, Chongqing University, Chongqing, China
| | - Lu Chen
- Institute of Big Data Science and Industry, Shanxi University, Taiyuan, China
| | - Mufti Mahmud
- Department of Computer Science, Nottingham Trent University, Nottingham, United Kingdom
| | - Yitian Zhao
- Cixi Institute of Biomedical Engineering, Ningbo Institute of Materials Technology and Engineering, Chinese Academy of Sciences, Ningbo, China
| | - Grigoris Antoniou
- Department of Computer Science, School of Computing and Engineering, University of Huddersfield, Huddersfield, United Kingdom
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Khojaste-Sarakhsi M, Haghighi SS, Ghomi SF, Marchiori E. Deep learning for Alzheimer's disease diagnosis: A survey. Artif Intell Med 2022; 130:102332. [DOI: 10.1016/j.artmed.2022.102332] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 04/29/2022] [Accepted: 05/30/2022] [Indexed: 11/28/2022]
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Ghaffari H, Tavakoli H, Pirzad Jahromi G. Deep transfer learning-based fully automated detection and classification of Alzheimer's disease on brain MRI. Br J Radiol 2022; 95:20211253. [PMID: 35616643 PMCID: PMC10162060 DOI: 10.1259/bjr.20211253] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2021] [Revised: 04/24/2022] [Accepted: 05/19/2022] [Indexed: 11/05/2022] Open
Abstract
OBJECTIVES To employ different automated convolutional neural network (CNN)-based transfer learning (TL) methods for both binary and multiclass classification of Alzheimer's disease (AD) using brain MRI. METHODS Herein, we applied three popular pre-trained CNN models (ResNet101, Xception, and InceptionV3) using a fine-tuned approach of TL on 3D T1-weighted brain MRI from a subset of ADNI dataset (n = 305 subjects). To evaluate power of TL, the aforementioned networks were also trained from scratch for performance comparison. Initially, Unet network segmentedthe MRI scans into characteristic components of gray matter (GM), white matter (WM), and cerebrospinal fluid (CSF). The proposed networks were trained and tested over the pre-processed and augmented segmented and whole images for both binary (NC/AD + progressive mild cognitive impairment (pMCI)+stable MCI (sMCI)) and 4-class (AD/pMCI/sMCI/NC) classification. Also, two independent test sets from the OASIS (n = 30) and AIBL (n = 60) datasets were used to externally assess the performance of the proposed algorithms. RESULTS The proposed TL-based CNN models achieved better performance compared to the training CNN models from scratch. On the ADNI test set, InceptionV3-TL achieved the highest accuracy of 93.75% and AUC of 92.0% for binary classification, as well as the highest accuracy of 93.75% and AUC of 96.0% for multiclass classification of AD on the whole images. On the OASIS test set, InceptionV3-TL outperformed two other models by achieving 93.33% accuracy with 93.0% AUC in binary classification of AD on the whole images. On the AIBL test set, InceptionV3-TL also outperformed two other models in both binary and multiclass classification tasks on the whole MR images and achieved accuracy/AUC of 93.33%/95.0% and 90.0%/93.0%, respectively. The GM segment as input provided the highest performance in both binary and multiclass classification of AD, as compared to the WM and CSF segments. CONCLUSION This study demonstrates the potential of applying deep TL approach for automated detection and classification of AD using brain MRI with high accuracy and robustness across internal and external test data, suggesting that these models can possibly be used as a supportive tool to assist clinicians in creating objective opinion and correct diagnosis. ADVANCES IN KNOWLEDGE We used CNN-based TL approaches and the augmentation techniques to overcome the insufficient data problem. Our study provides evidence that deep TL algorithms can be used for both binary and multiclass classification of AD with high accuracy.
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Affiliation(s)
- Hamed Ghaffari
- Neuroscience Research Center, Baqiyatallah University of Medical Sciences, Tehran, Iran
| | | | - Gila Pirzad Jahromi
- Neuroscience Research Center, Baqiyatallah University of Medical Sciences, Tehran, Iran
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35
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Jia H, Lao H. Deep learning and multimodal feature fusion for the aided diagnosis of Alzheimer's disease. Neural Comput Appl 2022. [DOI: 10.1007/s00521-022-07501-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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36
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A Cumulants-Based Human Brain Decoding. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:6474515. [PMID: 35860640 PMCID: PMC9293498 DOI: 10.1155/2022/6474515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Revised: 06/12/2022] [Accepted: 06/23/2022] [Indexed: 11/17/2022]
Abstract
Human cognition is influenced by the way the nervous system processes information and is linked to this mechanical explanation of the human body’s cognitive function. Accuracy is the key emphasis in neuroscience which may be enhanced by utilising new hardware, mathematical, statistical, and computational methodologies. Feature extraction and feature selection also play a crucial function in gaining improved accuracy since the proper characteristics can identify brain states efficiently. However, both feature extraction and selection procedures are dependent on mathematical and statistical techniques which implies that mathematical and statistical techniques have a direct or indirect influence on prediction accuracy. The forthcoming challenges of the brain-computer interface necessitate a thorough critical understanding of the complicated structure and uncertain behavior of the brain. It is impossible to upgrade hardware periodically, and thus, an option is necessary to collect maximum information from the brain against varied actions. The mathematical and statistical combination could be the ideal answer for neuroscientists which can be utilised for feature extraction, feature selection, and classification. That is why in this research a statistical technique is offered together with specialised feature extraction and selection methods to increase the accuracy. A score fusion function is changed utilising an enhanced cumulants-driven likelihood ratio test employing multivariate pattern analysis. Functional MRI data were acquired from 12 patients versus a visual test that comprises of pictures from five distinct categories. After cleaning the data, feature extraction and selection were done using mathematical approaches, and lastly, the best match of the projected class was established using the likelihood ratio test. To validate the suggested approach, it is compared with the current methods reported in recent research.
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37
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Fathi S, Ahmadi M, Dehnad A. Early diagnosis of Alzheimer's disease based on deep learning: A systematic review. Comput Biol Med 2022; 146:105634. [DOI: 10.1016/j.compbiomed.2022.105634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2022] [Revised: 04/25/2022] [Accepted: 04/25/2022] [Indexed: 11/03/2022]
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38
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A Practical Multiclass Classification Network for the Diagnosis of Alzheimer’s Disease. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12136507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Patients who have Alzheimer’s disease (AD) pass through several irreversible stages, which ultimately result in the patient’s death. It is crucial to understand and detect AD at an early stage to slow down its progression due to the non-curable nature of the disease. Diagnostic techniques are primarily based on magnetic resonance imaging (MRI) and expensive high-dimensional 3D imaging data. Classic methods can hardly discriminate among the almost similar pixels of the brain patterns of various age groups. The recent deep learning-based methods can contribute to the detection of the various stages of AD but require large-scale datasets and face several challenges while using the 3D volumes directly. The extant deep learning-based work is mainly focused on binary classification, but it is challenging to detect multiple stages with these methods. In this work, we propose a deep learning-based multiclass classification method to distinguish amongst various stages for the early diagnosis of Alzheimer’s. The proposed method significantly handles data shortage challenges by augmentation and manages to classify the 2D images obtained after the efficient pre-processing of the publicly available Alzheimer’s Disease Neuroimaging Initiative (ADNI) dataset. Our method achieves an accuracy of 98.9% with an F1 score of 96.3. Extensive experiments are performed, and overall results demonstrate that the proposed method outperforms the state-of-the-art methods in terms of overall performance.
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39
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Wang C, Jiang X, Wang Z, Guo X, Wan W, Wang J. AMB-Wnet: Embedding attention model in multi-bridge Wnet for exploring the mechanics of disease. Gene Expr Patterns 2022; 45:119259. [PMID: 35718280 DOI: 10.1016/j.gep.2022.119259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Revised: 04/07/2022] [Accepted: 06/07/2022] [Indexed: 11/09/2022]
Abstract
In recent years, progressive application of convolutional neural networks in image processing has successfully filtered into medical diagnosis. As a prerequisite for images detection and classification, object segmentation in medical images has attracted a great deal of attention. This study is based on the fact that most of the analysis of pathological diagnoses requires nuclei detection as the starting phase for obtaining an insight into the underlying biological process and further diagnosis. In this paper, we introduce an embedded attention model in multi-bridge Wnet (AMB-Wnet) to achieve suppression of irrelevant background areas and obtain good features for learning image semantics and modality to automatically segment nuclei, inspired by the 2018 Data Science Bowl. The proposed architecture, consisting of the redesigned down sample group, up-sample group, and middle block (a new multiple-scale convolutional layers block), is designed to extract different level features. In addition, a connection group is proposed instead of skip-connection to transfer semantic information among different levels. In addition, the attention model is well embedded in the connection group, and the performance of the model is improved without increasing the amount of calculation. To validate the model's performance, we evaluated it using the BBBC038V1 data sets for nuclei segmentation. Our proposed model achieves 85.83% F1-score, 97.81% accuracy, 86.12% recall, and 83.52% intersection over union. The proposed AMB-Wnet exhibits superior results compared to the original U-Net, MultiResUNet, and recent Attention U-Net architecture.
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Affiliation(s)
- Chunxing Wang
- School of Physics and Electronics, Shandong Normal University, Jinan, China
| | - Xiaodong Jiang
- School of Physics and Electronics, Shandong Normal University, Jinan, China
| | - Zixuan Wang
- SDU-ANU Joint Science College of Shandong University, Jinan, China
| | - Xiaorui Guo
- School of Physics and Electronics, Shandong Normal University, Jinan, China
| | - Wenbo Wan
- School of Information Science and Engineering, Shandong Normal University, Jinan, China.
| | - Jian Wang
- School of Information Science and Engineering, Shandong Normal University, Jinan, China.
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Subbaraya SH, Parthasarathy SS. Probabilistic principal component analysis and long short-term memory classifier for automatic detection of Alzheimer’s disease using MRI brain images. INTERNATIONAL JOURNAL OF KNOWLEDGE-BASED AND INTELLIGENT ENGINEERING SYSTEMS 2022. [DOI: 10.3233/kes-220007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
The automatic recognition and classification of Alzheimer disease utilizing magnetic resonance imaging is a hard task, due to the complexity and variability of the size, location, texture and shape of the lesions. The objective of this study is to propose a proper feature dimensional reduction and classification approach to improve the performance of Alzheimer disease recognition and classification. At first, the input brain images were acquired from Open Access Series of Imaging Studies (OASIS) and National Institute of Mental Health and Neuro Sciences (NIMHANS) databases. Then, the image pre-processing and feature extraction were attained by applying Contrast Limited Adaptive Histogram Equalization (CLAHE) and Discrete Wavelet Transform (DWT) approach to denoise and extract the feature vectors from the images. In addition, Probabilistic Principal Component Analysis (PPCA) was used to diminish the extracted features dimension that effectively lessen the “curse of dimensionality” concern. At last, Long Short-Term Memory (LSTM) classifier was employed to classify the brain images as Alzheimer disease, normal, and Mild Cognitive Impairment (MCI). From the simulation outcome, the proposed system attained better performance compared to the existing systems and showed 3–11% improvement in recognition accuracy.
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41
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Deep Learning-Based Diagnosis of Alzheimer’s Disease. J Pers Med 2022; 12:jpm12050815. [PMID: 35629237 PMCID: PMC9143671 DOI: 10.3390/jpm12050815] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2022] [Revised: 05/15/2022] [Accepted: 05/16/2022] [Indexed: 12/27/2022] Open
Abstract
Alzheimer’s disease (AD), the most familiar type of dementia, is a severe concern in modern healthcare. Around 5.5 million people aged 65 and above have AD, and it is the sixth leading cause of mortality in the US. AD is an irreversible, degenerative brain disorder characterized by a loss of cognitive function and has no proven cure. Deep learning techniques have gained popularity in recent years, particularly in the domains of natural language processing and computer vision. Since 2014, these techniques have begun to achieve substantial consideration in AD diagnosis research, and the number of papers published in this arena is rising drastically. Deep learning techniques have been reported to be more accurate for AD diagnosis in comparison to conventional machine learning models. Motivated to explore the potential of deep learning in AD diagnosis, this study reviews the current state-of-the-art in AD diagnosis using deep learning. We summarize the most recent trends and findings using a thorough literature review. The study also explores the different biomarkers and datasets for AD diagnosis. Even though deep learning has shown promise in AD diagnosis, there are still several challenges that need to be addressed.
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Frizzell TO, Glashutter M, Liu CC, Zeng A, Pan D, Hajra SG, D’Arcy RC, Song X. Artificial intelligence in brain MRI analysis of Alzheimer's disease over the past 12 years: A systematic review. Ageing Res Rev 2022; 77:101614. [PMID: 35358720 DOI: 10.1016/j.arr.2022.101614] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 03/02/2022] [Accepted: 03/24/2022] [Indexed: 12/17/2022]
Abstract
INTRODUCTION Multiple structural brain changes in Alzheimer's disease (AD) and mild cognitive impairment (MCI) have been revealed on magnetic resonance imaging (MRI). There is a fast-growing effort in applying artificial intelligence (AI) to analyze these data. Here, we review and evaluate the AI studies in brain MRI analysis with synthesis. METHODS A systematic review of the literature, spanning the years from 2009 to 2020, was completed using the PubMed database. AI studies using MRI imaging to investigate normal aging, mild cognitive impairment, and AD-dementia were retrieved for review. Bias assessment was completed using the PROBAST criteria. RESULTS 97 relevant studies were included in the review. The studies were typically focused on the classification of AD, MCI, and normal aging (71% of the reported studies) and the prediction of MCI conversion to AD (25%). The best performance was achieved by using the deep learning-based convolution neural network algorithms (weighted average accuracy 89%), in contrast to 76-86% using Logistic Regression, Support Vector Machines, and other AI methods. DISCUSSION The synthesized evidence is paramount to developing sophisticated AI approaches to reliably capture and quantify multiple subtle MRI changes in the whole brain that exemplify the complexity and heterogeneity of AD and brain aging.
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Goenka N, Tiwari S. AlzVNet: A volumetric convolutional neural network for multiclass classification of Alzheimer’s disease through multiple neuroimaging computational approaches. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103500] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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44
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Diagnosis of Intracranial Tumors via the Selective CNN Data Modeling Technique. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12062900] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
A brain tumor occurs in humans when a normal cell turns into an aberrant cell inside the brain. Primarily, there are two types of brain tumors in Homo sapiens: benign tumors and malignant tumors. In brain tumor diagnosis, magnetic resonance imaging (MRI) plays a vital role that requires high precision and accuracy for diagnosis, otherwise, a minor error can result in severe consequences. In this study, we implemented various configured convolutional neural network (CNN) paradigms on brain tumor MRI scans that depict whether a person is a brain tumor patient or not. This paper emphasizes objective function values (OFV) achieved by various CNN paradigms with the least validation cross-entropy loss (LVCEL), maximum validation accuracy (MVA), and training time (TT) in seconds, which can be used as a feasible tool for clinicians and the medical community to recognize tumor patients precisely. Experimentation and evaluation were based on a total of 2189 brain MRI scans, and the best architecture shows the highest accuracy of 0.8275, maximum objective function value of 1.84, and an area under the ROC (AUC-ROC) curve of 0.737 to accurately recognize and classify whether or not a person has a brain tumor.
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45
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Ardalan Z, Subbian V. Transfer Learning Approaches for Neuroimaging Analysis: A Scoping Review. Front Artif Intell 2022; 5:780405. [PMID: 35265830 PMCID: PMC8899512 DOI: 10.3389/frai.2022.780405] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Accepted: 01/17/2022] [Indexed: 12/18/2022] Open
Abstract
Deep learning algorithms have been moderately successful in diagnoses of diseases by analyzing medical images especially through neuroimaging that is rich in annotated data. Transfer learning methods have demonstrated strong performance in tackling annotated data. It utilizes and transfers knowledge learned from a source domain to target domain even when the dataset is small. There are multiple approaches to transfer learning that result in a range of performance estimates in diagnosis, detection, and classification of clinical problems. Therefore, in this paper, we reviewed transfer learning approaches, their design attributes, and their applications to neuroimaging problems. We reviewed two main literature databases and included the most relevant studies using predefined inclusion criteria. Among 50 reviewed studies, more than half of them are on transfer learning for Alzheimer's disease. Brain mapping and brain tumor detection were second and third most discussed research problems, respectively. The most common source dataset for transfer learning was ImageNet, which is not a neuroimaging dataset. This suggests that the majority of studies preferred pre-trained models instead of training their own model on a neuroimaging dataset. Although, about one third of studies designed their own architecture, most studies used existing Convolutional Neural Network architectures. Magnetic Resonance Imaging was the most common imaging modality. In almost all studies, transfer learning contributed to better performance in diagnosis, classification, segmentation of different neuroimaging diseases and problems, than methods without transfer learning. Among different transfer learning approaches, fine-tuning all convolutional and fully-connected layers approach and freezing convolutional layers and fine-tuning fully-connected layers approach demonstrated superior performance in terms of accuracy. These recent transfer learning approaches not only show great performance but also require less computational resources and time.
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Affiliation(s)
- Zaniar Ardalan
- Department of Systems and Industrial Engineering, College of Engineering, University of Arizona, Tucson, AZ, United States
- *Correspondence: Zaniar Ardalan
| | - Vignesh Subbian
- Department of Systems and Industrial Engineering, College of Engineering, University of Arizona, Tucson, AZ, United States
- Department of Biomedical Engineering, College of Engineering, University of Arizona, Tucson, AZ, United States
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Zhang Y, Teng Q, Qing L, Liu Y, He X. Lightweight deep residual network for alzheimer’s disease classification using sMRI slices. JOURNAL OF INTELLIGENT & FUZZY SYSTEMS 2022. [DOI: 10.3233/jifs-211247] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Alzheimer’s disease (AD) is a degenerative brain disease and the most common cause of dementia. In recent years, with the widespread application of artificial intelligence in the medical field, various deep learning-based methods have been applied for AD detection using sMRI images. Many of these networks achieved AD vs HC (Healthy Control) classification accuracy of up to 90%but with a large number of computational parameters and floating point operations (FLOPs). In this paper, we adopt a novel ghost module, which uses a series of cheap operations of linear transformation to generate more feature maps, embedded into our designed ResNet architecture for task of AD vs HC classification. According to experiments on the OASIS dataset, our lightweight network achieves an optimistic accuracy of 97.92%and its total parameters are dozens of times smaller than state-of-the-art deep learning networks. Our proposed AD classification network achieves better performance while the computational cost is reduced significantly.
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Affiliation(s)
- Yanteng Zhang
- College of Electronics and Information Engineering, Sichuan University, Chengdu, Sichuan, P R China
| | - Qizhi Teng
- College of Electronics and Information Engineering, Sichuan University, Chengdu, Sichuan, P R China
| | - Linbo Qing
- College of Electronics and Information Engineering, Sichuan University, Chengdu, Sichuan, P R China
| | - Yan Liu
- Department of Neurology, Chengdu Third People’s Hospital, Chengdu, Sichuan, P R China
| | - Xiaohai He
- College of Electronics and Information Engineering, Sichuan University, Chengdu, Sichuan, P R China
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47
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Machine learning techniques for diagnosis of alzheimer disease, mild cognitive disorder, and other types of dementia. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103293] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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Sethi M, Ahuja S, Rani S, Koundal D, Zaguia A, Enbeyle W. An Exploration: Alzheimer's Disease Classification Based on Convolutional Neural Network. BIOMED RESEARCH INTERNATIONAL 2022; 2022:8739960. [PMID: 35103240 PMCID: PMC8800619 DOI: 10.1155/2022/8739960] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Accepted: 12/08/2021] [Indexed: 12/15/2022]
Abstract
Alzheimer's disease (AD) is the most generally known neurodegenerative disorder, leading to a steady deterioration in cognitive ability. Deep learning models have shown outstanding performance in the diagnosis of AD, and these models do not need any handcrafted feature extraction over conventional machine learning algorithms. Since the 2012 AlexNet accomplishment, the convolutional neural network (CNN) has been progressively utilized by the medical community to assist practitioners to early diagnose AD. This paper explores the current cutting edge applications of CNN on single and multimodality (combination of two or more modalities) neuroimaging data for the classification of AD. An exhaustive systematic search is conducted on four notable databases: Google Scholar, IEEE Xplore, ACM Digital Library, and PubMed in June 2021. The objective of this study is to examine the effectiveness of classification approaches on AD to analyze different kinds of datasets, neuroimaging modalities, preprocessing techniques, and data handling methods. However, CNN has achieved great success in the classification of AD; still, there are a lot of challenges particularly due to scarcity of medical imaging data and its possible scope in this field.
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Affiliation(s)
- Monika Sethi
- Chitkara University Institute of Engineering and Technology, Chitkara University, Punjab, India
| | - Sachin Ahuja
- Chitkara University Institute of Engineering and Technology, Chitkara University, Punjab, India
| | - Shalli Rani
- Chitkara University Institute of Engineering and Technology, Chitkara University, Punjab, India
| | - Deepika Koundal
- Department of Systemics, School of Computer Science, University of Petroleum and Energy Studies, Dehradun, India
| | - Atef Zaguia
- Department of Computer Science, College of Computers and Information Technology, Taif University, P.O. BOX 11099, Taif 21944, Saudi Arabia
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Bento M, Fantini I, Park J, Rittner L, Frayne R. Deep Learning in Large and Multi-Site Structural Brain MR Imaging Datasets. Front Neuroinform 2022; 15:805669. [PMID: 35126080 PMCID: PMC8811356 DOI: 10.3389/fninf.2021.805669] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Accepted: 12/27/2021] [Indexed: 12/22/2022] Open
Abstract
Large, multi-site, heterogeneous brain imaging datasets are increasingly required for the training, validation, and testing of advanced deep learning (DL)-based automated tools, including structural magnetic resonance (MR) image-based diagnostic and treatment monitoring approaches. When assembling a number of smaller datasets to form a larger dataset, understanding the underlying variability between different acquisition and processing protocols across the aggregated dataset (termed “batch effects”) is critical. The presence of variation in the training dataset is important as it more closely reflects the true underlying data distribution and, thus, may enhance the overall generalizability of the tool. However, the impact of batch effects must be carefully evaluated in order to avoid undesirable effects that, for example, may reduce performance measures. Batch effects can result from many sources, including differences in acquisition equipment, imaging technique and parameters, as well as applied processing methodologies. Their impact, both beneficial and adversarial, must be considered when developing tools to ensure that their outputs are related to the proposed clinical or research question (i.e., actual disease-related or pathological changes) and are not simply due to the peculiarities of underlying batch effects in the aggregated dataset. We reviewed applications of DL in structural brain MR imaging that aggregated images from neuroimaging datasets, typically acquired at multiple sites. We examined datasets containing both healthy control participants and patients that were acquired using varying acquisition protocols. First, we discussed issues around Data Access and enumerated the key characteristics of some commonly used publicly available brain datasets. Then we reviewed methods for correcting batch effects by exploring the two main classes of approaches: Data Harmonization that uses data standardization, quality control protocols or other similar algorithms and procedures to explicitly understand and minimize unwanted batch effects; and Domain Adaptation that develops DL tools that implicitly handle the batch effects by using approaches to achieve reliable and robust results. In this narrative review, we highlighted the advantages and disadvantages of both classes of DL approaches, and described key challenges to be addressed in future studies.
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Affiliation(s)
- Mariana Bento
- Electrical and Software Engineering, Schulich School of Engineering, University of Calgary, Calgary, AB, Canada
- Hotchkiss Brain Institute, University of Calgary, Calgary, AB, Canada
- Calgary Image Processing and Analysis Centre, Foothills Medical Centre, Calgary, AB, Canada
- *Correspondence: Mariana Bento
| | - Irene Fantini
- School of Electrical and Computer Engineering, University of Campinas, Campinas, Brazil
| | - Justin Park
- Hotchkiss Brain Institute, University of Calgary, Calgary, AB, Canada
- Calgary Image Processing and Analysis Centre, Foothills Medical Centre, Calgary, AB, Canada
- Radiology and Clinical Neurosciences, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
| | - Leticia Rittner
- School of Electrical and Computer Engineering, University of Campinas, Campinas, Brazil
| | - Richard Frayne
- Hotchkiss Brain Institute, University of Calgary, Calgary, AB, Canada
- Calgary Image Processing and Analysis Centre, Foothills Medical Centre, Calgary, AB, Canada
- Radiology and Clinical Neurosciences, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
- Seaman Family MR Research Centre, Foothills Medical Centre, Calgary, AB, Canada
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50
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Odusami M, Maskeliūnas R, Damaševičius R. An Intelligent System for Early Recognition of Alzheimer's Disease Using Neuroimaging. SENSORS (BASEL, SWITZERLAND) 2022; 22:s22030740. [PMID: 35161486 PMCID: PMC8839926 DOI: 10.3390/s22030740] [Citation(s) in RCA: 28] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2021] [Revised: 01/14/2022] [Accepted: 01/17/2022] [Indexed: 05/08/2023]
Abstract
Alzheimer's disease (AD) is a neurodegenerative disease that affects brain cells, and mild cognitive impairment (MCI) has been defined as the early phase that describes the onset of AD. Early detection of MCI can be used to save patient brain cells from further damage and direct additional medical treatment to prevent its progression. Lately, the use of deep learning for the early identification of AD has generated a lot of interest. However, one of the limitations of such algorithms is their inability to identify changes in the functional connectivity in the functional brain network of patients with MCI. In this paper, we attempt to elucidate this issue with randomized concatenated deep features obtained from two pre-trained models, which simultaneously learn deep features from brain functional networks from magnetic resonance imaging (MRI) images. We experimented with ResNet18 and DenseNet201 to perform the task of AD multiclass classification. A gradient class activation map was used to mark the discriminating region of the image for the proposed model prediction. Accuracy, precision, and recall were used to assess the performance of the proposed system. The experimental analysis showed that the proposed model was able to achieve 98.86% accuracy, 98.94% precision, and 98.89% recall in multiclass classification. The findings indicate that advanced deep learning with MRI images can be used to classify and predict neurodegenerative brain diseases such as AD.
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Affiliation(s)
- Modupe Odusami
- Department of Multimedia Engineering, Kaunas University of Technology, 51368 Kaunas, Lithuania; (M.O.); (R.M.)
| | - Rytis Maskeliūnas
- Department of Multimedia Engineering, Kaunas University of Technology, 51368 Kaunas, Lithuania; (M.O.); (R.M.)
| | - Robertas Damaševičius
- Department of Software Engineering, Kaunas University of Technology, 51368 Kaunas, Lithuania
- Correspondence:
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