Diatom Ecophysiology: Crossing Signals on the Road to Recovery from Nutrient Deprivation

Widespread Production of Polyunsaturated Aldehydes by Benthic Diatoms of the North Pacific Ocean's Salish Sea

Diatoms are key primary producers across marine, freshwater, and terrestrial ecosystems. They are responsible for photosynthesis and secondary production that, in part, support complex food webs. Diatoms can produce phytochemicals that have transtrophic ecological effects which increase their competitive fitness. Polyunsaturated aldehydes (PUAs) are one class of diatom-derived phytochemicals that are known to have allelopathic and anti-herbivory properties. The anti-herbivory capability of PUAs results from their negative effect on grazer fecundity. Since their discovery, research has focused on their production by pelagic marine diatoms, and their effects on copepod egg production, hatching success, and juvenile survival and development. Few investigations have explored PUA production by the prolific suite of benthic marine diatoms, despite their importance to coastal trophic systems. In this study, we tested eight species of benthic diatoms for the production of the bioactive PUAs 2,4-heptadienal, 2,4-octadienal, and 2,4-decadienal. Benthic diatom species were isolated from the Salish Sea, an inland sea within the North Pacific ecosystem. All species were found to be producers of at least two PUAs in detectable concentrations, with five species producing all three PUAs in quantifiable concentrations. Our results indicate that production of PUAs from Salish Sea benthic diatoms may be widespread, and thus these compounds may contribute to benthic coastal food web dynamics through heretofore unrecognized pathways. Future studies should expand the geographic scope of investigations into benthic diatom PUA production and explore the effects of benthic diatoms on benthic consumer fecundity.

Multi-omic insights into the cellular response of Phaeodactylum tricornutum (Bacillariophyta) strains under grazing pressure

Background/Aims

Phaeodactylum tricornutum, a model organism of diatoms, plays a crucial role in Earth's primary productivity. Investigating its cellular response to grazing pressure is highly significant for the marine ecological environment. Furthermore, the integration of multi-omics approaches has enhanced the understanding of its response mechanism.

Methods

To assess the molecular and cellular responses of P.tricornutum to grazer presence, we conducted transcriptomic, proteomic, and metabolomic analyses, combined with phenotypic data from previous studies. Sequencing data were obtained by Illumina RNA sequencing, TMT Labeled Quantitative Proteomics and Non-targeted Metabolomics, and WGCNA analysis and statistical analysis were performed.

Results

Among the differentially expressed genes, we observed complex expression patterns of the core genes involved in the phenotypic changes of P.tricornutum under grazing pressure across different strains and multi-omics datasets. These core genes primarily regulate the levels of various proteins and fatty acids, as well as the cellular response to diverse signals.

Conclusion

Our research reveals the association of multi-omics in four strains responses to grazing effects in P.tricornutum. Grazing pressure significantly impacted cell growth, fatty acid composition, stress response, and the core genes involved in phenotype transformation.

Reducing nutrient increases diatom biomass in a subtropical eutrophic lake, China-Do the ammonium concentration and nitrate to ammonium ratio play a role?

Response of aquatic organisms to eutrophication have been well reported, while less studies are available for the recovery of eutrophic lakes following a reduction in the external loading, especially for systems where nitrogen is reduced but the phosphorus concentration is maintained high due to internal loading. Diatoms are nitrate (NO₃-N) opportunists but can also use ammonium (NH₄-N). They may, therefore, be more sensitive to nitrogen reduction than other algae that typically prefer NH₄-N. We document the variations of nutrients and diatoms in subtropical, eutrophic Lake Taihu over 28 yr during which a reduction of the external loading resulted from lake management. According to the results of change point analysis, data on environmental variables were divided into two periods (P1: 1992-2006; P2: 2007-2019) with two different seasons (WS: Winter-Spring; SA: Summer-Autumn), respectively. Compared with P1-WS, the concentration of NH₄-N decreased significantly whereas NO₃-N showed no significant change in P2-WS. In contrast, NH₄-N concentrations were low and showed no significant changes in P1-SA and P2-SA and NO₃-N decreased significantly in the latter period. Accordingly, NO₃-N: NH₄-N mass ratios in P1-SA and P2-WS were all significantly higher than those in P2-SA and P1-WS, respectively. The biomass of WS diatom increased significantly and the timing of the peak biomass shifted from P1-SA to P2-WS since 2007. The SEM analysis showed that NO₃-N was retained as a statistically significant predictor for diatom biomass in P1-SA and significant effects of windspeed, zooplankton and NH₄-N on diatom biomass in P2-WS. Windspeed and zooplankton have further changed the biomass of diatoms in the case of declining inorganic nitrogen. We conclude that the magnitude of vernal suppression or stimulation of diatom assemblages has increased, concomitant with the variations of NH₄-N and NO₃-N: NH₄-N mass ratios. Diatoms response to NH₄-N or NO₃-N is apparently changing in response to water temperature in this eutrophic shallow lake. Thus, parallel reductions in external nitrogen loading, along with variations in dominant inorganic nitrogen, will stimulate the growth of diatom and therefore increase the total biomass of phytoplankton in still high internal phosphorus loading, which is should be regarded as a good sign of restoration measures.