Discerning three novel chromate reduce and transport genes of highly efficient Pannonibacter phragmitetus BB: From genome to gene and protein

Advances in mechanism for the microbial transformation of heavy metals: implications for bioremediation strategies

Heavy metals are extensively discharged through various anthropogenic activities, resulting in an environmental risk on a global scale. In this case, microorganisms can survive in an extreme heavy metal-contaminated environment via detoxification or resistance, playing a pivotal role in the speciation, bioavailability, and mobility of heavy metals. Therefore, studies on the mechanism for the microbial transformation of heavy metals are of great importance and can provide guidance for heavy metal bioremediation. Current research studies on the microbial transformation of heavy metals mainly focus on the single oxidation, reduction and methylation pathways. However, complex microbial transformation processes and corresponding bioremediation strategies have never been clarified, which may involve the inherent physicochemical properties of heavy metals. To uncover the underlying mechanism, we reclassified heavy metals into three categories based on their biological transformation pathways, namely, metals that can be chelated, reduced or oxidized, and methylated. Firstly, we comprehensively characterized the difference in transmembrane pathways between heavy metal cations and anions. Further, biotransformation based on chelation by low-molecular-weight organic complexes is thoroughly discussed. Moreover, the progress and knowledge gaps in the microbial redox and (de)methylation mechanisms are discussed to establish a connection linking theoretical advancements with solutions to the heavy metal contamination problem. Finally, several efficient bioremediation strategies for heavy metals and the limitations of bioremediation are proposed. This review presents a solid contribution to the design of efficient microbial remediation strategies applied in the real environment.

Feasibility and mechanism of adsorption and bioreduction of hexavalent chromium using Rhodopseudomonas palustris immobilized on multiple materials

Rhodopseudomonas palustris immobilized on multiple materials was used to invistigate Cr(VI) adsorption and bioreduction. The highest Cr(VI) removal (97.5%) was achieved at 276h under the opitimed conditions of 2.5% SA, 8% PVA, and 50% filling degree. The highest adsorption capacity was obtained at 11.75 mg g-1 under 300 mg L-1 Cr(VI). Results from adsorption kinetics and isotherms indicated that Cr(VI) adsorption of immobilized photosynthetic bacteria (IPSB) was consistent with the Freundich model and the pseudo-second-order kinetic model (qe = 14.00 mg g-1). SEM and FTIR analyses verified that the porous multilayer network structure of IPSB provided more adsorption sites and functional groups for the removal of Cr(VI). Furthermore, the maximum Cr(VI) reduction efficiency of IPSB was achieved at 10.80 mg g-1, which correlated with the up-regulation of chrR gene expressions at 100 mg L-1 Cr(VI). This study demonstrated the dual mechanisms of Cr(VI) removal in IPSB-treated Cr wastewater, involving both chemisorption and bioreduction working synergistically.

Comprehensive distribution characteristics and factors affecting the migration of chromium in a typical chromium slag-contaminated site with a long history in China

The contamination of abandoned chromium slag-contaminated sites poses serious threats to human health and the environment. Therefore, improving the understanding of their distribution characteristics and health risks by multiple information is necessary. This study explored the distribution, accumulation characteristic, and the role in the migration process of chromium. The results showed that the contents of total Cr and Cr (VI) ranged from 12.00 to 7400.00 mg/kg, and 0.25 to 2160.00 mg/kg, respectively. The average contents of both total Cr and Cr (VI) reached the highest value at the depth of 7-9 m, where the silt layer retaining total Cr and Cr (VI) was. The spatial distribution analysis revealed that the total contamination area percentages of total Cr and Cr (VI) reached 7.87% and 90.02% in the mixed fill layer, and reduced to 1.21% and 34.53% in the silty layer, and the same heavily polluted areas were located in the open chromium residue storage. Soil pH and moisture content were the major factors controlling the migration of total Cr and Cr(VI) in soils. Results of probabilistic health risk assessment revealed that carcinogenic risk was negligible for adults and children, and the sensitive analysis implied that the content of Cr(VI) was the predominant contributor to carcinogenic risk. The combination of chemical reduction and microbial remediation could be the feasible remediation strategy for soil Cr(VI) pollution. Overall, this study provides scientific information into the chromium post-remediation and pollution management for various similar chromium-contaminated sites.

Cr(VI) removal from wastewater using nano zero-valent iron and chromium-reducing bacteria

Significant global efforts are currently underway to alleviate the presence of toxic metals in water bodies, aiming to encourage a sustainable environment. Nevertheless, the scientific community has yet to methodically inspect the performance and mechanisms underlying the interaction between nanomaterials and microorganisms in this context. Therefore, this study seeks to address this knowledge gap by developing a novel system that integrates nano zero-valent iron (nZVI) with chromium-reducing bacteria (CrRB) to efficiently remove Cr(VI) from water sources. The combined use of RBC600 and CrRB resulted in a Cr(VI) removal rate of 77.73%, displaying a substantial improvement of 17.61% compared to the use of CrRB alone. The efficacy of Cr(VI) elimination was observed to be affected by several factors within the system, such as the pH value, the quantity of nZVI added, the degree of CrRB inoculation, and the initial concentration of Cr(VI) at the onset of the experiment. When the pH was adjusted to 5, the complete removal of 200 mg/L Cr(VI) was achieved within 36 h. Increasing the dosage of nZVI to above 2 g/L resulted in the complete elimination of Cr(VI) from the solution within 72 h. This can be attributed to the availability of more reaction sites for the reduction of Cr(VI), facilitated by the higher nZVI dose. Additionally, the increased dose of nZVI allowed for the dissolution of more reactive Fe(II) ions. The characterization analysis, high-throughput sequencing, and fluorescence quantitative PCR results have established that CrRB and its extracellular polymer effectively reduce and complex Cr(VI). This process facilitated the dissolution of the passivated layer on the surface of nZVI, thus significantly enhancing the efficiency of nZVI in responding to Cr(VI). Additionally, the presence of nZVI created a favorable living environment for CrRB, resulting in increased richness and diversity within the CrRB community. These findings provide valuable preliminary insights into the mechanism underlying Cr(VI) elimination by the synergistic interaction between nZVI and CrRB. Therefore, this study establishes a solid theoretical foundations for the application of nano-bio synergy in the remediation of Cr(VI).

Facilitating New Chromium Reducing Microbes to Enhance Hexavalent Chromium Reduction by In Situ Sonoporation-Mediated Gene Transfer in Soils

Chromium (Cr) is a heavy metal with a high toxicity and pathogenicity. Microbial reduction is an effective strategy to remove Cr(VI) at contaminated sites but suffers from the low populations and activities of Cr-reducing microorganisms in soils. This study proposed an in situ sonoporation-mediated gene transfer approach, which improved soil Cr(VI) reduction performance by delivering exogenous Cr-transporter chrA genes and Cr-reducing yieF genes into soil microorganisms with the aid of ultrasound. Besides the increasing populations of Cr-resistant bacteria and elevated copy numbers of chrA and yieF genes after sonoporation-mediated gene transfer, three new Cr-reducing strains were isolated, among which Comamonas aquatica was confirmed to obtain Cr-resistant capability. In addition, sonoporation-mediated gene transfer was the main driving force significantly shaping soil microbial communities owing to the predominance of Cr-resistant microbes. This study pioneered and evidenced that in situ soil sonoporation-mediated gene transfer could effectively deliver functional genes into soil indigenous microbes to facilitate microbial functions for enhanced bioremediation, e.g., Cr-reduction in this study, showing its feasibility as a chemically green and sustainable remediation strategy for heavy metal contaminated sites.

Chromium in plant-soil nexus: Speciation, uptake, transport and sustainable remediation techniques

Heavy metal (HM) pollution has become a serious global problem due to the non-biodegradable nature of the HMs and their persistence in the environment. Agricultural soil is a non-renewable resource that requires careful management so that it can fulfill the increasing demand for agricultural food production. However, different anthropogenic activities have resulted in a large-scale accumulation of HMs in soil which is detrimental to soil and plant health. Due to their ubiquity, increased bioavailability, toxicity, and non-biodegradable nature, HM contamination has formed a roadblock in the way of achieving food security, safety, and sustainability in the future. Chromium (Cr), specifically Cr(VI) is a highly bioavailable HM with no proven role in the physiology of plants. Chromium has been found to be highly toxic to plants, with its toxicity also influenced by chemical speciation, which is in turn controlled by different factors, such as soil pH, redox potential, organic matter, and microbial population. In this review, the different factors that influence Cr speciation were analyzed and the relationship between biogeochemical transformations of Cr and its bioavailability which may be beneficial for devising different Cr remediation strategies has been discussed. Also, the uptake and transport mechanism of Cr in plants, with particular reference to sulfate and phosphate transporters has been presented. The biological solutions for the remediation of Cr contaminated sites which offer safe and viable alternatives to old-style physical and chemical remediation strategies have been discussed in detail. This review provides theoretical guidance in developing suitable approaches for the better management of these remediation strategies.

Phytoremediation of heavy metals in soil and water: An eco-friendly, sustainable and multidisciplinary approach

Rapid industrialization, increased waste production and surge in agricultural activities, mining, contaminated irrigation water and industrial effluents contribute to the contamination of water resources due to heavy metal (HM) accumulation. Humans employ HM-contaminated resources to produce food, which eventually accumulates in the food chain. Decontamination of these valuable resources, as well as avoidance of additional contamination has long been needed to avoid detrimental health impacts. Phytoremediation is a realistic and promising strategy for heavy metal removal from polluted areas, based on the employment of hyper-accumulator plant species that are extremely tolerant to HMs present in the environment/soil. Green plants are used to remove, decompose, or detoxify hazardous metals in this technique. For soil decontamination, five types of phytoremediation methods have been used viz. phytostabilization, phytodegradation, rhizofiltration, phytoextraction and phytovolatilization. Traditional phytoremediation methods, on the other hand, have significant limits in terms of large-scale application, thus biotechnological efforts to modify plants for HM phytoremediation ways are being explored to improve the efficacy of plants as HM decontamination candidates. It is relatively a new technology that is widely regarded as economic, efficient and unique besides being environment friendly. New metal hyperaccumulators with high efficiency are being explored and employed for their use in phytoremediation and phytomining. Therefore, this review comprehensively discusses different strategies and biotechnological approaches for the removal of various HM containments from the environment, with emphasis on the advancements and implications of phytoremediation, along with their applications in cleaning up various toxic pollutants. Moreover, sources, effects of HMs and factors affecting phytoremediation of HMs metals have also been discussed.

Cloning of Nitrate Reductase and Nitrite Reductase Genes and Their Functional Analysis in Regulating Cr(VI) Reduction in Ectomycorrhizal Fungus Pisolithus sp.1

Assimilatory-type nitrate reductase (NR) and nitrite reductase (NiR) are the key enzymes that involve in nitrate assimilation and nitrogen cycling in microorganisms. NR and NiR with NADH or NADPH and FMN or FAD domains could be coupled to the reduction process of hexavalent chromium [Cr(VI)] in microorganisms. A new assimilatory-type NR gene (named niaD) and a new assimilatory-type NiR gene (named niiA) are cloned, identified, and functionally characterized by 5′ and 3′ RACE, alignment, annotation, phylogenetic tree, and yeast mutant complementation analyses from Pisolithus sp.1, a dominant symbiotic ectomycorrhizal fungi (EMF) that can assist in phytoremediation. Assimilatory-type niaD and niiA were 2,754 bp and 3,468 bp and encode a polypeptide with 917 and 1,155 amino acid residues, respectively. The isoelectric points of NR (Pisolithus sp.1 NR) and NiR (Pisolithus sp.1 NiR) of Pisolithus sp.1 are 6.07 and 6.38, respectively. The calculated molecular mass of Pisolithus sp.1 NR and Pisolithus sp.1 NiR is 102.065 and 126.914 kDa, respectively. Yeast mutant complementation analysis, protein purification, and activities of NR and NiR under Cr treatment suggest that Pisolithus sp.1 NR is a functional NR that mediates Cr(VI) tolerance and reduction. The multiple alignment demonstrates that Pisolithus sp.1 NR is potentially a nicotinamide adenine dinucleotide phosphate-dependent flavin mononucleotide reductase and also Class II chromate reductase. Our results suggest that Pisolithus sp.1 NR plays a key role in Cr(VI) reduction in the EMF Pisolithus sp.1.

Remediation of Cr(VI)-contaminated soil by combined chemical reduction and microbial stabilization: The role of biogas solid residue (BSR)

In this work, the use of chemical reduction combined with microbial stabilization to remediate Cr(VI) in contaminated soil was systematically investigated. The effectiveness, phytotoxicity and microbial diversity resulting from the combination of ferrous sulfate with microbial stabilization by biogas solid residue (BSR) were determined. The stabilization experiments showed that the optimum Cr(VI) conversion rate of 99.92% was achieved with an Fe (II)/Cr(VI) molar ratio of 3:1, a BSR dose of 5.2% (wt), and a water content of 40%. Under these conditions, the residual Cr(VI) content was 0.80 mg/kg, which satisfied the risk screening value (≤ 5.7 mg/kg) for soil contamination of land for general development in China. The remaining Cr(VI) level was stable for 90 days during the chemical reduction and biogenic stabilization process. Moreover, Zucconi test analysis suggested that the soil phytotoxicity to Brassica campestris L. disappeared. The results of microbial diversity analysis indicated that the bacterial community changed significantly during chemical reduction and microbial stabilization processes, and Bacillus, Pseudomonas and Psychrobacter may participate in the reduction of Cr(VI) into Cr(III).

"In-situ synthesized" iron-based bimetal promotes efficient removal of Cr(VI) in by zero-valent iron-loaded hydroxyapatite

Anionic Cr(VI) and cationic heavy metals generally co-exist in industrial effluents and threaten the public health. Zero-valent iron (ZVI) particles tent to passivate rapidly, which results in a gradual drop in its reactivity. In this work, a strategy of "in-situ synthesized" iron-based bimetal was first developed to stimulate the self-activation of passivated ZVI. During this process, ZVI-loaded hydroxyapatite (ZVI/HAP) was prepared to enhance the affinity for co-existing Cu²⁺, which promoted the in-situ Cu⁰ deposition on ZVI/HAP to form a Fe-Cu bimetal. The deposited Cu⁰ significantly decreased the activation energy (E_a) of Cr(VI) reduction by 24.9%, and its corresponding Cr(VI) removal (96.53%) was much higher that of single Cr(VI) system (68.67%) within 9 h. More importantly, the removal of Cr(VI) and Cu²⁺ were synchronously achieved. Systematical electrochemical characterizations were first introduced to explore the galvanic behaviors of iron-based bimetal. The charge transfer resistance and the negative open circuit potential of ZVI/HAP significantly decreased with the Cu⁰ deposition, thereby accelerating the electron transfer from Fe⁰ to Cu²⁺. The enhanced electron transfer further facilitated the Fe(II) release to promote Cr(VI) reduction. This "in-situ synthesized" iron-based bimetal strategy provides a novel pattern for ZVI activation and exhibits practical application in remediation of combined contaminant.

Synergistic chromium(VI) reduction and phenol oxidative degradation by FeS2/Fe0 and persulfate

It is a challenge to simultaneously treat the combined pollutants of chromium(VI) (Cr(VI)) and organics (such as phenol) in wastewater. Here, a stable and efficient redox system based on FeS₂ sulfidated zero valent iron (FeS₂/Fe⁰) and persulfate (PS) was developed to synchronously remove Cr(VI) and phenol. 100% of phenol (10 mg/L) was oxidized in 10 min and Cr(VI) (20 mg/L) was completely reduced to Cr(III) in 90 min in the FeS₂/Fe⁰+PS system with a pH range of 3.0-9.0, respectively. phenol was selectively oxidized without re-oxidizing Cr(III) in such system. The surface-bound Fe²⁺ was the major reactive species to synchronously reduce Cr(VI) and oxidize phenol. The mechanisms were elucidated that the phenol degradation was accelerated by the generated Cr(III) complexing with its products, and that SO₄^2-, whose production speed was accelerated by the PS activation to oxidize phenol and FeS₂, was conductive to corrode Fe⁰ to regenerate the surface-bound Fe²⁺ for reducing Cr(VI) and oxidizing phenol. It is potential to develop a high-performance and large-scaled FeS₂/Fe⁰-based redox platform to remediate the complex pollution of Cr(VI) and organics.

Highly Sensitive Luminescent Bioassay Using Recombinant Escherichia coli Biosensor for Rapid Detection of Low Cr(VI) Concentration in Environmental Water

In this study, we constructed a recombinant Escherichia coli strain with different promoters inserted between the chromate-sensing regulator chrB and the reporter gene luxAB to sense low hexavalent chromium (Cr(VI)) concentrations (<0.05 mg/L); subsequently, its biosensor characteristics (sensitivity, selectivity, and specificity) for measuring Cr(VI) in various water bodies were evaluated. The luminescence intensity of each biosensor depended on pH, temperature, detection time, coexisting carbon source, coexisting ion, Cr(VI) oxyanion form, Cr(VI) concentration, cell type, and type of medium. Recombinant lux-expressing E. coli with the T7 promoter (T7-lux-E. coli, limit of detection (LOD) = 0.0005 mg/L) had the highest luminescence intensity or was the most sensitive for Cr(VI) detection, followed by E. coli with the T3 promoter (T3-lux-E. coli, LOD = 0.001 mg/L) and that with the SP6 promoter (SP6-lux-E. coli, LOD = 0.005 mg/L). All biosensors could be used to determine whether the Cr(VI) standard was met in terms of water quality, even when using thawing frozen cells as biosensors after 90-day cryogenic storage. The SP6-lux-E. coli biosensor had the shortest detection time (0.5 h) and the highest adaptability to environmental interference. The T7-lux-E. coli biosensor—with the optimal LOD, a wide measurement range (0.0005–0.5 mg/L), and low deviation (−5.0–7.9%) in detecting Cr(VI) from industrial effluents, domestic effluents, and surface water—is an efficient Cr(VI) biosensor. This unprecedented study is to evaluate recombinant lux E. coli with dissimilar promoters for their possible practice in Cr(VI) measurement in water bodies, and the biosensor performance is clearly superior to that of past systems in terms of detection time, LOD, and detection deviation for real water samples.

Microbial reduction of Cr(VI) in the presence of Ni, Cu and Zn by bacterial consortium enriched from an electroplating contaminated site

The bioremediation of Cr(VI) has been intensively reported in recent years, while little information about Cr(VI)-reducing consortium enriched from in-situ contaminated soil has been revealed, specifically the functional genes involved. In this study, we verified a Cr(VI) reduction process by a consortium enriched from in-situ contaminated soil through enzymatic analysis. The chromate reductase gene ChrR has been successfully amplified and further analyzed, provided solid evidence to prove the Cr(VI) bio-reduction was an enzyme-mediated process. Meanwhile, the analysis of metabolic pathways demonstrates that the consortium could detoxicate and resist Cr(VI) and co-existing metals (Ni²⁺, Zn²⁺ and Cu²⁺) through membrane transport and DNA repair process. The co-existing heavy metals Zn and Cu had a relatively significant negative and positive effects on Cr(VI) reduction respectively, which may play important roles in the Cr(VI) contaminated soil bioremediation.

Iron oxide minerals promote simultaneous bio-reduction of Cr(VI) and nitrate: Implications for understanding natural attenuation

Nitrate and Cr(VI) coexist in aquifers, posing a potential threat to ecological environment and public health. Iron oxide minerals (hematite and magnetite) exist ubiquitously in groundwater, which are hot spots for biogeochemical transformation. However, there is still a knowledge gap anout the effect of iron oxide minerals on bioreduction of nitrate and Cr(VI). Here we observed that iron oxide minerals can significantly improve the ability of microorganisms to simultaneously reduce nitrate and Cr(VI), the reduction rates of nitrate and Cr(VI) increased by 7.3 and 8.5 times, respectively. The addition of minerals reinforced biofilm formation and shaped microbial communities with a new dominant strain of Azoarcus. The expression levels of functional genes were also upregulated, including napA, narG, nfsA, yieF, POD, and CAT. Furthermore, nitrate and chromate reductases' activities increased by 11 and 5 folds, respectively. These results demonstrated that iron oxide minerals participated in the bio-transformation of nitrate and Cr(VI) co-contamination, alleviating oxidative stress, shaping the microbial community, and ultimately accelerating bio-transformation. These findings offer a window into the biological transformation of co-contamination in the presence of iron oxide minerals, and insights to reveal strategies for microbial detoxification and to develop promising approaches for dealing with complex pollution conditions.

Biological removal of hexavalent chromium: evaluation of the metabolic activity of native and Cr(VI)-acclimated activated sludge using a respirometric method

Hexavalent chromium becomes in one of the tops internationally concern environmental issues due to its wide usage in several industrial activities. There are two stable oxidation states of chromium in the environment which differ significantly on its toxicity; Cr(III) has lower solubility, mobility and lesser biological toxicity in comparison with Cr(VI). While Cr(VI) is a well-known carcinogen, Cr(III) is an essential dietary element. For this reason, most technologies focus attention on the reduction of Cr(VI) to Cr(III). On this context, the ability of microorganisms to reduce Cr(VI) to Cr(III) has gained attention. The objectives of the present work were to analyze the effect of Cr(VI) on the activated sludge community in a continuous reactor, and to evaluate the differences on the metabolic activity of native (NAS) and Cr(VI)-acclimated activated sludge (CrAAS) using a respirometric method. Results showed that the activated sludge community had the capability to acclimate to the presence of Cr(VI). On the other hand, the increase of the initial Cr(VI) concentration from 0 to 100 mgCr/L leads to a decrease in the specific exogenous respiration rate (q_Ex ) values, but this reduction was more noticeably in the case of NAS in comparison with CrAAS. The respirometric curves were well described by the proposed mathematical model. It was concluded that the CrAAS tolerated a Cr(VI) concentration about one order of magnitude higher than NAS, which was positively reflected in the respiration rate first-order decay constant (k_d ), the specific maximum exogenous respiration rate (q_Exm ), and the observed oxidation coefficient (Y_O/S ) values.

Chemical-Assisted Microbially Mediated Chromium (Cr) (VI) Reduction Under the Influence of Various Electron Donors, Redox Mediators, and Other Additives: An Outlook on Enhanced Cr(VI) Removal

Chromium (Cr) (VI) is a well-known toxin to all types of biological organisms. Over the past few decades, many investigators have employed numerous bioprocesses to neutralize the toxic effects of Cr(VI). One of the main process for its treatment is bioreduction into Cr(III). Key to this process is the ability of microbial enzymes, which facilitate the transfer of electrons into the high valence state of the metal that acts as an electron acceptor. Many underlying previous efforts have stressed on the use of different external organic and inorganic substances as electron donors to promote Cr(VI) reduction process by different microorganisms. The use of various redox mediators enabled electron transport facility for extracellular Cr(VI) reduction and accelerated the reaction. Also, many chemicals have employed diverse roles to improve the Cr(VI) reduction process in different microorganisms. The application of aforementioned materials at the contaminated systems has offered a variety of influence on Cr(VI) bioremediation by altering microbial community structures and functions and redox environment. The collective insights suggest that the knowledge of appropriate implementation of suitable nutrients can strongly inspire the Cr(VI) reduction rate and efficiency. However, a comprehensive information on such substances and their roles and biochemical pathways in different microorganisms remains elusive. In this regard, our review sheds light on the contributions of various chemicals as electron donors, redox mediators, cofactors, etc., on microbial Cr(VI) reduction for enhanced treatment practices.

Comprehensive genomic and proteomic profiling reveal Acinetobacter johnsonii JH7 responses to Sb(III) toxicity

Antimony (Sb) pollution poses a severe health threat to ecosystems. However, the toxic effects of Sb on biota are far from being elucidated. One of the unresolved questions is the molecular signal pathways underlying microbial adaptation to excess antimonite or Sb(III) exposure. The response of a Sb(III)-resistant bacterium Acinetobacter. johnsonii JH7 to Sb(III) stress was investigated using genomic and proteomic profiling. Sb(III) induced the formation of reactive oxygen species thereby leading to oxidative stress and the up-regulation of antioxidant enzyme activities. In addition, two important operons (ars and pst) playing critical roles in this cellular response were identified. The ars proteins functioned cooperatively to expel Sb(III) thereby decreasing antimonite toxicity. Downregulation of the phosphate-specific transporter might reduce the uptake of Sb(V) while hindering phosphorus assimilation. Interaction of Sb(III) with JH7 strain cells also affected peptide syntheses and folding, energy conversion, and stability of the cellular envelope. The present study provides for the first time a global map of cellular adaptation to excess Sb(III). Such information is potentially useful to future Sb pollution remediation strategies.

Cu(II) nonspecifically binding chromate reductase NfoR promotes Cr(VI) reduction

Cu(II)-enhanced microbial Cr(VI) reduction is common in the environment, yet its mechanism is unknown. The specific activity of chromate reductase, NfoR, from Staphylococcus aureus sp. LZ-01 was augmented 1.5-fold by Cu(II). Isothermal titration calorimetry and spectral data show that Cu(II) binds to NfoR nonspecifically. Further, Cu(II) stimulates the nitrobenzene reduction of NfoR, indicating that Cu(II) promotes electron transfer. The crystal structure of NfoR in complex with CuSO₄ (1.46 Å) was determined. The overall structure of NfoR-Cu(II) complex is a dimer that covalently binds with FMN and Cu(II)-binding pocket is located at the interface of the NfoR dimer. Structural superposition revealed that NfoR resembles the structure of class II chromate reductase. Site-directed mutagenesis revealed that Leu⁴⁶ and Phe¹²³ were involved in NADH binding, whereas Trp⁷⁰ and Ser⁴⁵ were the key residues for nitrobenzene binding. Furthermore, His¹⁰⁰ and Asp¹⁷¹ were preferential affinity sites for Cu(II) and that Cys¹⁶³ is an active site for FMN binding. Attenuation reductase activity in C163S can be partially restored to 54% wild type by increasing Cu(II) concentration. Partial restoration indicates dual-channel electron transfer of NfoR via Cu(II) and FMN. We propose a catalytic mechanism for Cu(II)-enhanced NfoR activity in which Cu(I) is formed transiently. Together, the current results provide an insight on Cu (II)-induced enhancement and benefit of Cr(VI) bioremediation.

Phytoremediation of toxic metals present in soil and water environment: a critical review

Heavy metals are one of the most hazardous inorganic contaminants of both water and soil environment composition. Normally, heavy metals are non-biodegradable in nature because of their long persistence in the environment. Trace amounts of heavy metal contamination may pose severe health problems in human beings after prolonged consumption. Many instrumental techniques such as atomic absorption spectrophotometry, inductively coupled plasma-mass spectrometry, X-ray fluorescence, neutron activation analysis, etc. have been developed to determine their concentration in water as well as in the soil up to ppm, ppb, or ppt levels. Recent advances in these techniques along with their respective advantages and limitations are being discussed in the present paper. Moreover, some possible remedial phytoremediation approaches (phytostimulation, phytoextraction, phyotovolatilization, rhizofiltration, phytostabilization) have been presented for the removal of the heavy metal contamination from the water and soil environments.

Chromium metabolism characteristics of coexpression of ChrA and ChrT gene

OBJECTIVE

Serratia sp. S2 is a wild strain with chromium resistance and reduction ability. Chromium(VI) metabolic-protein-coding gene ChrA and ChrT were cloned from Serratia sp. S2, and ligated with prokaryotic expression vectors pET-28a (+) and transformed into E. coli BL21 to construct ChrA, ChrT and ChrAT engineered bacteria. By studying the characteristics of Cr(VI) metabolism in engineered bacteria, the function and mechanism of the sole expression and coexpression of ChrA and ChrT genes were studied.

METHODS

Using Serratia sp. S2 genome as template, ChrA and ChrT genes were amplified by PCR, and prokaryotic expression vectors was ligated to form the recombinant plasmid pET-28a (+)-ChrA, pET-28a (+)-ChrT and pET-28a (+)-ChrAT, and transformed into E. coli BL21 to construct ChrA, ChrT, ChrAT engineered bacteria. The growth curve, tolerance, and reduction of Cr(VI), the distribution of intracellular and extracellular Cr, activity of chromium reductase and intracellular oxidative stress in engineered bacteria were measured to explore the metabolic characteristics of Cr(VI) in ChrA, ChrT, ChrAT engineered bacteria.

RESULTS

ChrA, ChrT and ChrAT engineered bacteria were successfully constructed by gene recombination technology. The tolerance to Cr(VI) was Serratia sp. S2 > ChrAT ≈ ChrA > ChrT > Control (P < 0.05), and the reduction ability to Cr(VI) was Serratia sp. S2 > ChrAT ≈ ChrT > ChrA (P < 0.05). The chromium distribution experiments confirmed that Cr(VI) and Cr(III) were the main valence states. Effect of electron donors on chromium reductase activity was NADPH > NADH > non-NAD(P)H (P < 0.05). The activity of chromium reductase increased significantly with NAD(P)H (P < 0.05). The Glutathione and NPSH (Non-protein Sulfhydryl) levels of ChrA, ChrAT engineered bacteria increased significantly (P < 0.05) under the condition of Cr(VI), but there was no significant difference in the indexes of ChrT engineered bacteria (P > 0.05).

CONCLUSION

ChrAT engineered bacteria possesses resistance and reduction abilities of Cr(VI). ChrA protein endows the strain with the ability to resist Cr(VI). ChrT protein reduces Cr(VI) to Cr(III) by using NAD(P)H as electronic donor. The reduction process promotes the production of GSH, GSSG and NPSH to maintain the intracellular reduction state, which further improves the Cr(VI) tolerance and reduction ability of ChrAT engineered bacteria.

Stabilization of heavy metal-contaminated soils by biochar: Challenges and recommendations

Various types of biochar have been widely used to remediate soil contamination from heavy metals (HMs) and to reduce HM mobility and bioavailability in soils in recent years. Most researchers have paid attention to the beneficial effects of biochar during the remediation process, but few have emphasized their negative effects and the challenges for their application. In this review, the negative effects and challenges of applying biochar for the remediation of HM-contaminated soils are thoroughly summarized and discussed, including the changeable characteristics of biochar, biochar over-application, toxic substances in biochar, activation of some HMs in soils by biochar, nonspecific adsorption, and the negative influences of biochar on soil microorganisms and plants. In addition, further research directions and several recommendations (standardization, long-term field experiments, mechanisms research and designer biochars) were also proposed to enable the large-scale application of biochar for the remediation of HM-contaminated soils.

Dynamic proteome responses to sequential reduction of Cr(VI) and adsorption of Pb(II) by Pannonibacter phragmitetus BB

Here, the microbial responses to Cr(VI) and Pb(II) with bio-removal of the metals in water by Pannonibacter phragmitetus BB were explored. The comparative bacterial proteomics showed that the intracellular and extracellular Cr(VI) reduction proteins, Pb(II) adsorption by the lipoprotein and sugar-related bacterial proteins, as well as Pb(II) precipitation by phosphate and OH^- were vital to the bio-removal of Cr(VI) and Pb(II). Moreover, the influx and efflux channels of Cr(VI) and Cr(III), Pb(II) transporters, extracellular siderophores for Pb(II) complexation and antioxidant proteins enabled the strain BB to resist the toxicity of Cr(VI) and Pb(II). In addition, the dynamic expression levels of the proteins related to reduction and transportation of Cr(VI), and adsorption, transportation and complexation of Pb(II) were dependent on the corresponding metal, respectively. The anti-oxidative stress system, such as superoxide dismutase, and Na⁺/H⁺ antiporters played central roles in the protein-protein interaction network to resist and detoxify Cr(VI) and Pb(II). The results of our study provide a novel insight for the physiological responses of the strain BB to the combined stresses of Pb(II) and Cr(VI).

Response of Cupriavidus basilensis B-8 to CuO nanoparticles enhances Cr(VI) reduction

CuO nanoparticles (NPs) released into aqueous environments induce metal toxicity, which generally exerts negative effects on various organisms and leads to great challenge for wastewater biotreatment. In this study, a promotion effect of CuO NPs on biological process was first found. Cr(VI) reduction by Cupriavidus basilensis B-8 (hereafter B-8) was enhanced in the presence of CuO NPs. The efficiency of Cr(VI) bioreduction was much higher with B-8 and CuO NPs (approximately 100%) than with B-8 (approximately 37.6%) and CuO NPs (39.9-44.7%) alone, indicating a stimulatory effect of CuO NPs on Cr(VI) reduction by B-8. Our material analyses revealed different response mechanisms of B-8 to Cr(VI), with and without CuO NPs. The addition of CuO NPs influenced the interaction of Cr(VI) with the N-, P-, S-, and C-related functional groups of B-8. Transcriptomic analysis indicated that multiple mechanisms, including Cr(VI) uptake and reactive oxygen species detoxification, were induced by Cr(VI). Many genes involved in various metabolic processes were significantly upregulated by the addition of CuO NPs. To a certain extent, the pressure of DNA repairment by B-8 induced by Cr(VI) was also alleviated by the presence of CuO NPs. They contributed to facilitate B-8 growth and enhance Cr(VI) reduction, even with 50 mg/L Cr(VI). This study not only elaborated the mechanisms of bacterial Cr(VI) reduction when enhanced by CuO NPs, but also provided a novel perspective for wastewater biotreatment.

Seasonal and spatial contamination statuses and ecological risk of sediment cores highly contaminated by heavy metals and metalloids in the Xiangjiang River

To reveal seasonal and spatial variations of heavy metals and metalloids (HMMs) in sediment of the Xiangjiang River, a total of 24 water and 649 sediment samples were collected from six sampling stations in the Songbai section of the river which had been polluted by HMMs for 100 years. Their contamination statuses and ecological risk were determined by enrichment factor (EF), geo-accumulation index (I_geo), pollution load index (PLI), and mean probable effect concentration quotients (mPECQs) analyses. The results revealed a unique seasonal distribution of metals in the sampling stations: The highest concentrations were revealed in the dry seasons (autumn and winter) and the lowest during the wet seasons (spring and summer). It exhibited a greater seasonal variation in the estuary sediment cores (sites ME and MW) than in the cores of other sites. Moreover, the highest concentrations of the tested metals were also found in the estuary sediment cores in the dry seasons (autumn and winter). The highest vertical concentrations of Pb, Zn, Cu, Ni, As, Fe, and Mn were observed at the depths of 16-36 cm in all of the sampled sediment cores. The EF, I_geo, PLI, and mPECQs values of all samples in autumn were higher than in summer. Cd posed the highest ecological risk in all seasons, although its concentrations were lower compared to other studied elements. Our results will benefit to develop feasible sediment quality guidelines for government monitor and remediate the local sediments in the Xiangjiang River.

Multi-omics response of Pannonibacter phragmitetus BB to hexavalent chromium

The release of hexavalent chromium [Cr(VI)] into water bodies poses a major threat to the environment and human health. However, studies of the biological response to Cr(VI) are limited. In this study, a toxic bacterial mechanism of Cr(VI) was investigated using Pannonibacter phragmitetus BB (hereafter BB), which was isolated from chromate slag. The maximum Cr(VI) concentrations with respect to the resistance and reduction by BB are 4000 mg L^-1 and 2500 mg L^-1, respectively. In the BB genome, more genes responsible for Cr(VI) resistance and reduction are observed compared with other P. phragmitetus strains. A total of 361 proteins were upregulated to respond to Cr(VI) exposure, including enzymes for Cr(VI) uptake, intracellular reduction, ROS detoxification, DNA repair, and Cr(VI) efflux and proteins associated with novel mechanisms involving extracellular reduction mediated by electron transfer, quorum sensing, and chemotaxis. Based on metabolomic analysis, 174 metabolites were identified. Most of the upregulated metabolites are involved in amino acid, glucose, lipid, and energy metabolisms. The results show that Cr(VI) induces metabolite production, while metabolites promote Cr(VI) reduction. Overall, multi-enzyme expression and metabolite production by BB contribute to its high ability to resist/reduce Cr(VI). This study provides details supporting the theory of Cr(VI) reduction and a theoretical basis for the efficient bioremoval of Cr(VI) from the environment.

Simultaneous adsorption of As(III), Cd(II) and Pb(II) by hybrid bio-nanocomposites of nano hydroxy ferric phosphate and hydroxy ferric sulfate particles coating on Aspergillus niger

To develop an efficient, convenient and cost-effective method to simultaneously remove pollution of As(III), Cd(II) and Pb(II) in wastewater, a strategy to fabricate hybrid bio-nanocomposites ((n-HFP + n-HFS)@An) of nano hydroxy ferric phosphate (n-HFP) and hydroxy ferric sulfate (n-HFS) particles coating on Aspergillus niger was applied. The scanning electron microscope and energy dispersive spectrum analyses showed that (n-HFP + n-HFS)@An composites had been successfully developed which well solved the self-agglomeration problem of the nano particles. Comparing to the bulk nanoparticles, the adsorption rates of the (n-HFP + n-HFS)@An composites for the three metals were promoted 145.34, 28.98 and 25.18% and reached 76.84, 73.62 and 94.31%, respectively. Similarly, the adsorption capacities for As(III), Cd(II), and Pb(II) were 162.00, 205.83 and 730.79 mg/g, respectively. Moreover, the pseudo-second-order kinetic model was more relevant to the adsorption on the three metals by (n-HFP + n-HFS)@An, and adsorbing As(III) was fitted to the Freundlich isotherm model, while the adsorption on Cd(II) or Pb(II) was related to the Langmuir isotherm model. In addition, the adsorption of Cd(II) and Pb(II) was associated with transformation of hydroxyl groups and precipitation with phosphate. As(III) was adsorbed through exchange between AsO₂^- and SO₄^2- in the (n-HFP + n-HFS)@An composites.

Goethite catalyzed Cr(VI) reduction by tartaric acid via surface adsorption

The surface catalysis of goethite on the Cr(VI) reduction by tartaric acid was examined together with its adsorption characteristics towards the two reactants. The results showed the adsorption of tartaric acid by goethite was favorable at low pH and adsorption isotherm could be properly described by Langmuir model. The adsorption kinetic curves for both reactants obeyed the pseudo second-order rate model (R² >0.99). The FTIR spectrum suggested the formation of bidentate binuclear surface complexes between tartaric acid and goethite. At pH 4.50, the reduction percentage of 0.1 mM Cr(VI) by 1.0 mM tartaric acid alone was about 12% after 72 h, while which was increased to 100% in the presence of goethite within 24 h. Kinetic results revealed the Cr(VI) reduction only occurred between the adsorbed tartaric acid and the aqueous Cr(VI) since the Cr(VI) adsorption was completely inhibited under the examined conditions. Meanwhile, the catalysis of aqueous Fe(III) released from the goethite surfaces was excluded due to its low concentration (<5 μM). With the initial concentration of tartaric acid decreased to 0.1 mM, Cr(VI) reduction could be completed within 4 h, confirmed by the XPS result that only Cr(III) species existed on the goethite surfaces. In this case, electron transfer was suggested to occur directly between the two adsorbed reactants or goethite was believed to serve as an ideal channel to allow electron excited from the adsorbed tartaric acid to transfer to the adsorbed Cr(VI). The findings above were helpful for us to understand the Cr(VI) reduction by organic compounds in soils with rich contents of Fe-oxides.