Application of microbially induced calcium carbonate precipitation with urea hydrolysis to improve the mechanical properties of soil

Advances in microbial self-healing concrete: A critical review of mechanisms, developments, and future directions

The self-healing bioconcrete, or bioconcrete as concrete containing microorganisms with self-healing capacities, presents a transformative strategy to extend the service life of concrete structures. This technology harnesses the biological capabilities of specific microorganisms, such as bacteria and fungi, which are integral to the material's capacity to autonomously mend cracks, thereby maintaining structural integrity. This review highlights the complex biochemical pathways these organisms utilize to produce healing compounds like calcium carbonate, and how environmental parameters, such as pH, temperature, oxygen, and moisture critically affect the repair efficacy. A comprehensive analysis of recently published peer-reviewed literature, and contemporary experimental research forms the backbone of this review with a focus on microbiological aspects of the self-healing process. The review assesses the challenges facing self-healing bioconcrete, including the longevity of microbial spores and the cost implications for large-scale implementation. Further, attention is given to potential research directions, such as investigating alternative biological agents and optimizing the concrete environment to support microbial activity. The culmination of this investigation is a call to action for integrating self-healing bioconcrete in construction on a broader scale, thereby realizing its potential to fortify infrastructure resilience and sustainability.

A state-of-the-art review on the application of lignosulfonate as a green alternative in soil stabilization

The utilization of lignosulfonate (LS) as a naturally derived biopolymer sourced from lignin in soil stabilization has gained significant attention in recent years. Its intermolecular interaction, hydrophobic and hydrophilic effects, adhesive and binding properties, erosion control abilities, compatibility with various soil types, and environmental sustainability make it a promising alternative to traditional soil stabilizers as well as highlighting its importance. By integrating LS into soil stabilization practices, soil properties can be enhanced, and an eco-friendlier approach can be adopted in the construction sector. This comprehensive review paper extensively examines the applications and structure of LS, as well as their efficacy and mechanisms on a micro-level scale. Afterward, it discusses the geotechnical characteristics of LS-treated soils, including consistency characteristics, dispersivity properties and erosion behavior, electrical conductivity, compaction parameters, permeability and hydraulic conductivity, compressibility characteristics, swelling potential, strength and stiffness properties, durability, and cyclic loading response. In general, LS incorporation into the soils could enhance the geotechnical properties. For instance, the Unconfined Compressive Strength (UCS) of fine-grained soils was observed to improve up to 105 %, while in the case of granular soils, the improvement can be as high as 450 %. This review also examines the economic and environmental efficiency, as well as challenges and ways forward related to LS stabilization. This can lead to economic and environmental benefits given the abundance of LS as a plant polymer for cleaner production and owing to its carbon neutrality and renewability.

Different calcium sources affect the products and sites of mineralized Cr(VI) by microbially induced carbonate precipitation

Microbially induced carbonate precipitation (MICP) is a common biomineralization method, which is often used for remediation of heavy metal pollution such as hexavalent chromium (Cr(VI)) in recent years. Calcium sources are essential for the MICP process. This study investigated the potential of MICP technology for Cr(VI) remediation under the influence of three calcium sources (CaCl2, Ca(CH3COO)2, Ca(C6H11O7)2). The results indicated that CaCl2 was the most efficient in the mineralization of Cr(VI), and Ca(C6H11O7)2 could significantly promote Cr(VI) reduction. The addition of different calcium sources all promoted the urease activity of Sporosarcina saromensis W5, in which the CaCl2 group showed higher urease activity at the same Ca2+ concentration. Besides, with CaCl2, Ca(CH3COO)2 and Ca(C6H11O7)2 treatments, the final fraction of Cr species (Cr(VI), reduced Cr(III) and organic Cr(III)-complexes) were mainly converted to the carbonate-bound, cytoplasm and cell membrane state, respectively. Furthermore, the characterization results revealed that three calcium sources could co-precipitate with Cr species to produce Ca10Cr6O24(CO3), and calcite and vaterite were present in the CaCl2 and Ca(CH3COO)2 groups, while only calcite was present in the Ca(C6H11O7)2 group. Overall, this study contributes to the optimization of MICP-mediated remediation of heavy metal contaminated soil. CaCl2 was the more suitable calcium source than the other two for the application of MICP technology in the Cr(VI) reduction and mineralization.

Synergistic biocementation: harnessing Comamonas and Bacillus ureolytic bacteria for enhanced sand stabilization

Biocementation, driven by ureolytic bacteria and their biochemical activities, has evolved as a powerful technology for soil stabilization, crack repair, and bioremediation. Ureolytic bacteria play a crucial role in calcium carbonate precipitation through their enzymatic activity, hydrolyzing urea to produce carbonate ions and elevate pH, thus creating favorable conditions for the precipitation of calcium carbonate. While extensive research has explored the ability of ureolytic bacteria isolated from natural environments or culture conditions, bacterial synergy is often unexplored or under-reported. In this study, we isolated bacterial strains from the local eutrophic river canal and evaluated their suitability for precipitating calcium carbonate polymorphs. We identified two distinct bacterial isolates with superior urea degradation ability (conductivity method) using partial 16 S rRNA gene sequencing. Molecular identification revealed that they belong to the Comamonas and Bacillus genera. Urea degradation analysis was performed under diverse pH (6,7 and 8) and temperature (15 °C,20 °C,25 °C and 30 °C) ranges, indicating that their ideal pH is 7 and temperature is 30 °C since 95% of the urea was degraded within 96 h. In addition, we investigated these strains individually and in combination, assessing their microbially induced carbonate precipitation (MICP) in silicate fine sand under low (14 ± 0.6 °C) and ideal temperature 30 °C conditions, aiming to optimize bio-mediated soil enhancement. Results indicated that 30 °C was the ideal temperature, and combining bacteria resulted in significant (p ≤ 0.001) superior carbonate precipitation (14-16%) and permeability (> 10- 6 m/s) in comparison to the average range of individual strains. These findings provide valuable insights into the potential of combining ureolytic bacteria for future MICP research on field applications including soil erosion mitigation, soil stabilization, ground improvement, and heavy metal remediation.

Ecofriendly solidification of sand using microbially induced calcium phosphate precipitation

This study introduces microbiologically induced calcium phosphate precipitation (MICPP) as a novel and environmentally sustainable method of soil stabilization. Using Limosilactobacillus sp., especially NBRC 14511 and fish bone solution (FBS) extracted from Tuna fish bones, the study was aimed at testing the feasibility of calcium phosphate compounds (CPCs) deposition and sand stabilization. Dynamic changes in pH and calcium ion (Ca2+) concentration during the precipitation experiments affected the precipitation and sequential conversion of dicalcium phosphate dihydrate (DCPD) to hydroxyapatite (HAp), which was confirmed by XRD and SEM analysis. Sand solidification experiments demonstrated improvements in unconfined compressive strength (UCS), especially at higher Urea/Ca2+ ratios. The UCS values obtained were 10.35 MPa at a ratio of 2.0, 3.34 MPa at a ratio of 1.0, and 0.43 MPa at a ratio of 0.5, highlighting the advantages of MICPP over traditional methods. Microstructural analysis further clarified the mineral composition, demonstrating the potential of MICPP in environmentally friendly soil engineering. The study highlights the promise of MICPP for sustainable soil stabilization, offering improved mechanical properties and reducing environmental impact, paving the way for novel geotechnical practices.

Influence of biochar in the calcite precipitation of sandy soil using sporosarcina ureae

The microbially induced calcium carbonate precipitation (MICP) technology is an emerging novel and sustainable technique for soil stabilization and remediation. MICP, a microorganism-mediated biomineralization process, has attracted interest for its potential to enhance soil characteristics. The inclusion of biochar, a carbon-rich substance formed by biomass pyrolysis, adds another degree of intricacy to this process. The study highlights the impact of the combination of biochar and MICP together, using a bacterium, Sporosarcina ureae, on soil improvement. This blend of MICP and biochar improved the soil in terms of its geotechnical properties and also enabled the sequestering of carbon safely. It was observed that addition of 4% biochar significantly increased the soil's shear strength parameters (c and φ) as well as its stiffness after 21 treatment cycles. This improvement was because the calcium carbonate precipitate, which acts as a crucial binding agent, increased significantly due to microbial action in the soil-biochar mixture compared to the pure soil sample. The excess carbonate precipitation on account of biochar addition was verified through SEM-EDAX analysis where the images showed noteworthy carbonate precipitation on the surface of particles and increment in the calcium mass at the same treatment cycles when compared with untreated sand. The collaboration between MICP and biochar effectively increased the carbon sequestration within the sand sample. It was observed that at 21 cycles of treatment, the carbon storage within the sand sample increased by almost 3 times at 4% biochar compared to sand without any biochar. The statistical analysis further affirmed that strength depends on both biochar and the number of treatment cycles, whereas carbon sequestration potential is primarily influenced by the biochar content alone. This strategy, as a sustainable and environmentally friendly approach, has the potential to reform soil improvement practices and contribute to both soil strength enhancement and climate change mitigation, supporting the maintenance of ecological balance.

The interplay between microbial communities and soil properties

In recent years, there has been considerable progress in determining the soil properties that influence the structure of the soil microbiome. By contrast, the effects of microorganisms on their soil habitat have received less attention with most previous studies focusing on microbial contributions to soil carbon and nitrogen dynamics. However, soil microorganisms are not only involved in nutrient cycling and organic matter transformations but also alter the soil habitat through various biochemical and biophysical mechanisms. Such microbially mediated modifications of soil properties can have local impacts on microbiome assembly with pronounced ecological ramifications. In this Review, we describe the processes by which microorganisms modify the soil environment, considering soil physics, hydrology and chemistry. We explore how microorganism-soil interactions can generate feedback loops and discuss how microbially mediated modifications of soil properties can serve as an alternative avenue for the management and manipulation of microbiomes to combat soil threats and global change.

Soil microbial improvement using enriched vinasse as a new abundant waste

This study proposes the use of vinasse, an inexpensive and readily available waste biopolymer, as a fundamental component of a waste culture medium that can enhance the effectiveness and cost-efficiency of the microbial-induced calcite precipitation (MICP) method for sustainable soil improvement. Vinasse enriched with urea, sodium caseinate, or whey protein concentrate is employed to optimize bacterial growth and urease activity of Sporosarcina pasteurii (S. pasteurii) bacterium. The best culture medium is analyzed using Taguchi design of experiments (TDOE) and statistical analysis, considering the concentration of vinasse and urea as effective parameters during growth time. To test the best culture medium for bio-treated soil, direct shear tests were performed on loose and bio-treated sand. The results demonstrate a substantial cost reduction from $0.455 to $0.005 per liter when using the new culture medium (vinasse and urea) compared to the conventional Nutrient Broth (NB) culture medium. Additionally, the new medium enhances soil shear strength, increasing the friction angle by 2.5 degrees and cohesion to 20.7 kPa compared to the conventional medium. Furthermore, the recycling of vinasse as a waste product can promote the progress of a circular economy and reduce environmental pollution. As ground improvement is essential for many construction projects, especially those that require high shear strength or are built on loose soil, this study provides a promising approach to achieving cost-effective and sustainable soil microbial improvement using enriched vinasse.

Growth characteristics of Cynodon dactylon and mechanical properties of slope with different sludge contents

The utilization of dredged sludge can reduce environmental pollution and save land resources. To explore using sludge resources in ecological slope-protection projects, dredged sludge was incorporated into ecological slope-protection soil. Cynodon dactylon was planted to analyze the effect of sludge content on its growth. Direct-shear tests on the slope-protection soil with and without Cynodon dactylon were conducted to elaborate on the effect of sludge content, water content, and roots on the mechanical properties of the sludge-clay mixture. When the sludge content was <50%, Cynodon dactylon's growth improved with the sludge content increase, but at >50%, the sludge content's effect was meagre. As the sludge content increased, the cohesion and internal friction angle of the sludge-clay mixture without roots decreased, lowering the shear strength. The soil's cohesive force and internal friction angle follows the sequence: natural state with roots > natural state without roots > saturated state with roots > saturated state without roots. The cohesion and shear strength of the sludge-clay mixture with roots increased at first before decreasing with an increase in sludge content, optimized at 50% sludge content. Here, the ecological slope stability was the best, meaning that the optimum sludge proportion was 50%.

Assessment of the Composition Effect of a Bio-Cementation Solution on the Efficiency of Microbially Induced Calcite Precipitation Processes in Loose Sandy Soil

Soil properties are the most important factors determining the safety of civil engineering structures. One of the soil improvement methods studied, mainly under laboratory conditions, is the use of microbially induced calcite precipitation (MICP). Many factors influencing the successful application of the MICP method can be distinguished; however, one of the most important factors is the composition of the bio-cementation solution. This study aimed to propose an optimal combination of a bio-cementation solution based on carbonate precipitation, crystal types, and the comprehensive strength of fine sand after treatment. A series of laboratory tests were conducted with the urease-producing environmental strain of bacteria B. subtilis, using various combinations of cementation solutions containing precipitation precursors (H2NCONH2, C6H10CaO6, CaCl2, MgCl2). To decrease the environmental impact and increase the efficiency of MICP processed, the addition of calcium lactate (CaL) and Mg ions was evaluated. This study was conducted in Petri dishes, assuming a 14-day soil treatment period. The content of water-soluble carbonate precipitates and their mineralogical characterization, as well as their mechanical properties, were determined using a pocket penetrometer test. The studies revealed that a higher concentration of CaL and Mg in the cementation solution led to the formation of a higher amount of precipitates during the cementation process. However, the crystal forms were not limited to stable forms, such as calcite, aragonite, (Ca, Mg)-calcite, and dolomite, but also included water-soluble components such as nitrocalcite, chloro-magnesite, and nitromagnesite. The presence of bacteria allowed for the increasing of the carbonate content by values ranging from 15% to 42%. The highest comprehensive strength was achieved for the bio-cementation solution containing urea (0.25 M), CaL (0.1 M), and an Mg/Ca molar ratio of 0.4. In the end, this research helped to achieve higher amounts of precipitates with the optimum combination of bio-cementation solutions for the soil improvement process. However, the numerical analysis of the precipitation processes and the methods reducing the environmental impact of the technology should be further investigated.

Microbially induced calcium precipitation driven by denitrification: Performance, metabolites, and molecular mechanisms

Microbially induced calcium precipitation (MICP) driven by denitrification has attracted extensive attention due to its application potential in nitrate removal from calcium-rich groundwater. However, little research has been conducted on this technique at the molecular level. Here, Pseudomonas WZ39 was used to explore the molecular mechanisms of nitrate-dependent MICP and the effects of Ca²⁺ on bacterial transcriptional regulation and metabolic response. The results exhibited that appropriate Ca²⁺ concentration (4.5 mM) can promote denitrification and the production of ATP, EPSs, and SMPs. Genome-wide analysis showed that the nitrate-dependent MICP was accomplished through heterotrophic denitrification and CO₂ capture. During this process, EPS biosynthesis and Ca²⁺ signaling regulation were involved in the nucleation template supply and Ca²⁺ homeostasis balance. Untargeted transcriptome- and metabolome-association analyses revealed that the addition of Ca²⁺ triggered the significant up-regulation in several key pathways, such as transmembrane transporter and channel activities, amino acid metabolism, fatty acid biosynthesis, and carbon metabolism, which played a momentous role in the mineral nucleation and energy provision. The detailed information provided novel insights for understanding the active control of bacteria on MICP, and has great significance for deepening the cognition of groundwater remediation using nitrate-dependent MICP technique.

Synergistic interactions of microbial fuel cell and microbially induced carbonate precipitation technology with molasses as the substrate

The application of microbially induced carbonate precipitation (MICP) technology is critical, but many challenges remain. In this paper, a microbial fuel cell (MFC) is used to treat molasses wastewater, and the effluent is used as the substrate to promote the growth of urease-producing bacteria. The results showed that the maximum voltage of MFC was 500 mV, and the maximum power density was 169.86 mW/m². The mineralization rate reached 100% on the 15^th day, and the mineralized product was calcite CaCO₃. According to the microbial community analysis, the unclassified_Comamondaceae, Arcobacter, and Aeromonas, which could improve the OH^-, signal molecular transmission and small molecular nutrients to promote the urease activity of urease-producing bacteria. The above conclusions provide a new way to reuse molasses wastewater efficiently and to apply MICP technology in dust suppression.

In-situ modified biosynthetic crystals with lanthanum for fluoride removal based on microbially induced calcium precipitation: Characterization, kinetics, and mechanism

In this research, in-situ modified biosynthetic crystals with lanthanum (BC-La) were synthesized based on anaerobic microbially induced calcium precipitation (MICP) and investigated its capacity for groundwater defluoridation under various operational conditions. The kinetic and thermodynamic models were simulated to explore the effect of the material on the removal of fluoride ion (F^-) under various parameters (pH, initial concentration of F^-, and temperature). BC-La had the maximum F^- adsorption capacity of 10.92 mg g^-1 and 96.66% removal efficiency. The pseudo-second-order kinetic model and Langmuir isotherm model were the best kinetic and isotherm models for F^- removal from BC-La, which indicated that F^- were mainly spontaneously removed through chemisorption and adsorption processes. The specific surface area was 54.26 m² g^-1 and the average pore size was 9.0670 nm. BC-La mainly contained LaCO₃OH, LaPO₄, CaCO₃, Ca₅ (PO₄)₃OH, and F^- was mainly removed through ion exchange with the material surface. Moreover, OH^-, PO₄^3-, and CO₃^2- significantly influenced the F^- removal. This work suggested a novel method for in-situ modification of anaerobic biosynthetic crystals, which improved the defluoridation effect of traditional biosynthetic crystals, increased the stability of the BC-La and allowed to remove F^- from groundwater consistently.

Human urine: A novel source of phosphorus for vivianite production

Human urine contributes up to 50 % of the phosphorus load in domestic wastewater. Decentralized sanitation systems that separately collect urine provide an opportunity to recover this phosphorus. In this study, we leveraged the unique and complex chemistry of urine in favor of recovering phosphorus as vivianite. We found that the type of urine affected the yield and purity of vivianite, but the kind of iron salt used, and reaction temperature, did not affect the yield and purity. Ultimately, it was the urine pH that affected the solubility of vivianite and other co-precipitates, with the highest yield (93 ± 2 %) and purity (79 ± 3 %) of vivianite obtained at pH 6.0. Yield and purity of vivianite were both maximized when Fe:P molar ratio was >1.5:1, but <2.2:1. This molar ratio provided sufficient iron to react with all available phosphorus, while exerting a competitive effect that suppressed the precipitation of other precipitates. Vivianite produced from fresh urine was less pure than vivianite produced from synthetic urine, because of the presence of organics in real urine, but washing the solids with deionized water improved the purity by 15.5 % at pH 6.0. Overall, this novel work adds to the growing body of literature on phosphorus recovery as vivianite from wastewater.

New non-ureolytic heterotrophic microbial induced carbonate precipitation for suppression of sand dune wind erosion

The detrimental effects of sand storms on agriculture, human health, transportation network, and infrastructures pose serious threats in many countries worldwide. Hence, wind erosion is considered a global challenge. An environmental-friendly method to suppress wind erosion is to employ microbially induced carbonate precipitation (MICP). However, the by-products of ureolysis-based MICP, such as ammonia, are not favorable when produced in large volumes. This study introduces two calcium formate-bacteria compositions for non-ureolytic MICP and comprehensively compares their performance with two calcium acetate-bacteria compositions, all of which do not produce ammonia. The considered bacteria are Bacillus subtilis and Bacillus amyloliquefaciens. First, the optimized values of factors controlling CaCO₃ production were determined. Then, wind tunnel tests were performed on sand dune samples treated with the optimized compositions, where wind erosion resistance, threshold detachment velocity, and sand bombardment resistance were measured. An optical microscope, scanning electron microscope (SEM), and X-ray diffraction analysis were employed to evaluate the CaCO₃ polymorph. Calcium formate-based compositions performed much better than the acetate-based compositions in producing CaCO₃. Moreover, B. subtilis produced more CaCO₃ than B. amyloliquefaciens. SEM micrographs clearly illustrated precipitation-induced active and inactive bounds and imprints of bacteria on CaCO₃. All compositions considerably reduced wind erosion.

Influence of humic acid on microbial induced carbonate precipitation for organic soil improvement

Microbial induced carbonate precipitation (MICP) is one of the most commonly researched topics on biocementation, which achieves cementation of soil particles by carbonate from urea hydrolysis catalyzed by microbial urease. Although most MICP studies are limited to stabilizing sandy soils, more researchers are now turning their interest to other weak soils, particularly organic soils. To stabilize organic soils, the influence of humic substances should be investigated since it has been reported to inhibit urease activity and disrupt the formation of calcium carbonate. This study investigates the effect of humic acid (HA), one fraction of humic substances, on MICP. For this purpose, the effects of HA content on CaCO₃ precipitation using three strains and on CaCO₃ morphology were examined. The results showed that native species in organic soils were less adversely affected by HA addition than the exogenous one. Another interesting finding is that bacteria seem to have strategies to cope with harsh conditions with HA. Observation of CaCO₃ morphology revealed that the crystallization process was hindered by HA to some extent, producing lots of fine amorphous precipitates and large aggregated CaCO₃. Overall, this study could provide an insightful understanding of possible obstacles when using MICP to stabilize organic soils.

Enhanced removal of fluoride, nitrate, and calcium using self-assembled fungus-flexible fiber composite microspheres combined with microbially induced calcium precipitation

Self-assembled fungus-flexible fiber composite microspheres (SFFMs) were firstly combined with microbially induced calcium precipitation (MICP) in a continuous-flow bioreactor and achieved the efficient removal of fluoride (F^-), nitrate (NO₃^-), and calcium (Ca²⁺). Under the influent F^- of 3.0 mg L^-1, pH of 7.0, and HRT of 8 h, the average removal efficiencies reached 77.54%, 99.39%, and 67.25% (0.29, 2.03, and 8.34 mg L^-1 h^-1), respectively. Fluorescence spectrum and flow cytometry analyses indicated that F^- content significantly affected the metabolism and viability of bacteria. SEM images showed that flexible fibers and intertwined hyphae provided effective locations for bacterial colonization in SFFMs. The precipitated products were characterized by XRD and FTIR, which revealed that F^- was mainly removed in the form of calcium fluoride and calcium fluorophosphate (CaF₂ and Ca₅(PO₄)₃F). High-throughput analysis at different levels demonstrated that Pseudomonas sp. WZ39 acted as the core strain, which played a crucial role in the bioreactor. The mechanism of enhanced denitrification was attributed to minor F^- stress and bioaugmentation technology. This study highlighted the superiorities of SFFMs and MICP combined remediation and documented a promising option for F^-, NO₃^-, and Ca²⁺ removal.

Effects of Hydroxypropyl Methylcellulose (HPMC) on the Reinforcement of Sand by Microbial-Induced Calcium Carbonate Precipitation (MICP)

Microbial-induced calcium carbonate precipitation (MICP) is a new technology used for reinforcing soils through microbial mineralization. However, the existing MICP treatment technology is more suiTable for deeper soils due to its high permeability. In this study, HPMC, a cohesive material combined with Sporosarcina pasteurii-induced calcium carbonate precipitation was used to improve the surface layer of the soil. It was also tested in different contents of bacterial solutions and cementation solutions and with a different number of MICP treatments, and was analyzed and discussed by measuring the surface layer strength, calcium carbonate content generated in the crust, rainfall erosion resistance, wind erosion resistance, and ammonia retention rate of the specimens. The microstructure of the samples was investigated by XRD and SEM. It was shown that the addition of HPMC and increasing the number of MICP treatments were effective in the increase in the calcium carbonate content in the surface crust, but had no effect on the total amount of induced calcium carbonate. The combination of HPMC addition and MICP technology can effectively reduce rainwater scour loss and wind erosion loss, and increase its rainfall erosion resistance and wind erosion resistance. Rainfall losses were reduced by up to 30% in specimens treated with HPMC for MICP technology. When the wind speed was 12 m/s, the maximum mass loss rate of the specimens treated with HPMC for MICP was only 0.828%. The addition of HPMC can effectively improve the ammonia absorption rate and reduce the release of ammonia in the process of MICP technology, which is of great significance for environmental protection. The microstructure showed that the addition of HPMC and the increase in the number of treatments using MICP technology can make the surface structure of the specimens more compact, and the calcium carbonate can more effectively fill the pores and cement the soil particles, while the addition of HPMC may not change the calcium carbonate crystal type.

Microbial communities in carbonate precipitates from drip waters in Nerja Cave, Spain

Research on cave microorganisms has mainly focused on the microbial communities thriving on speleothems, rocks and sediments; however, drip water bacteria and calcite precipitation has received less attention. In this study, microbial communities of carbonate precipitates from drip waters in Nerja, a show cave close to the sea in southeastern Spain, were investigated. We observed a pronounced difference in the bacterial composition of the precipitates, depending on the galleries and halls. The most abundant phylum in the precipitates of the halls close to the cave entrance was Proteobacteria, due to the low depth of this sector, the direct influence of a garden on the top soil and the infiltration of waters into the cave, as well as the abundance of members of the order Hyphomicrobiales, dispersing from plant roots, and other Betaproteobacteria and Gammaproteobacteria, common soil inhabitants. The influence of marine aerosols explained the presence of Marinobacter, Idiomarina, Thalassobaculum, Altererythrobacter and other bacteria due to the short distance from the cave to the sea. Nineteen out of forty six genera identified in the cave have been reported to precipitate carbonate and likely have a role in mineral deposition.

Brevundimonas diminuta isolated from mines polluted soil immobilized cadmium (Cd2+) and zinc (Zn2+) through calcium carbonate precipitation: Microscopic and spectroscopic investigations

The toxic metal(loid)s TMs resistant bacterium Brevundimonas diminuta was isolated for the first time from mines polluted soil in Fengxian, China, and assessed for its potential for Cd and Zn precipitation in Cd and Zn co-contaminated aqueous solution at various Cd and Zn levels (20, 40, 80, 160, and 200 mg L^-1), pH values (5, 6, 7, 8, and 9), and temperatures (20, 25, 30, and 35 °C). B. diminuta showed a high resistance to both Cd and Zn and was able to precipitate up to 99.2 and 99.7% of dissolved Cd and Zn respectively, at a pH of 7 and temperature of 30 °C. B. diminuta reduced the dissolved concentrations of Cd and Zn below the threshold levels in water. The 3D-EEM analysis revealed the presence of extracellular polymeric substances (EPS) such as tryptophan indicating bacterial growth under Cd/Zn stress. FTIR showed polysaccharides, CO₃^2-, CaCO₃, PO₄^3-, and proteins, which may enhance bacterial growth and metal precipitation. SEM-EDS confirmed the leaf-like and granular shape of the biological precipitation and reduction in the percent weight of TMs, which promoted the adhesion/adsorption of Cd²⁺, Zn²⁺, and Ca²⁺. Moreover, XRD analysis confirmed the precipitation of Cd, Zn, and Ca in the form of CdCO₃/Cd₃(PO₄)₂, ZnCO₃/ZnHPO₄/Zn₂(OH)PO₄/Zn₃(PO₄)₂, and CaCO₃/Ca₅(PO₃)₄OH, respectively. These findings indicate that Brevundimonas diminuta can be used for the bioremediation of TMs-contaminated aquatic environments.

Synergistic removal of fluoride from groundwater by seed crystals and bacteria based on microbially induced calcium precipitation

A new hypothesis that seed crystals (SC) and bacteria based on microbially induced calcium precipitation (MICP) synergistically remove fluoride (F^-) from groundwater was proposed, with a focus on evaluating the defluoridation potential of this method and revealing its F^- removal mechanism. The crucial conditions were optimized to reduce preparation and operation costs. SC furnished more available binding sites due to the existence of bacteria, and the reuse experiments showed that the defluoridation efficiency of SC still remained a high level after 14 cycles (70.10%), with a residual F^- concentration of 0.96 mg L^-1. The SEM-EDS, FTIR and XRD analyses indicated the predominant F^- removal mechanism of SC could be ascribed to the chemisorption, ion exchange, and co-precipitation. Moreover, ion exchange and co-precipitation (PO₄^3- involvement) were validated more contributive than chemisorption (CaCO₃ and CaSO₄ involvement). As a feasible, reusable, and eco-friendly technique, SC suggests promising applications in the treatment of fluoride-contaminated groundwater.

Batch fluidized bed reactor based modified biosynthetic crystals: Optimization of adsorptive properties and application in fluoride removal from groundwater

A batch fluidized bed reactor (BFBR) with modified biosynthetic crystals (MBC), derived from Pseudomonas sp. HXF1, was investigated for the treatment of the groundwater containing fluoride (F^-). Impacts of different hydraulic retention time (HRT), pH, and initial F^- concentration on F^- removal were examined and the maximum defluorination efficiency was recorded as 95.20%. Moreover, recycling experiments were performed to evaluate the stability of repeated use. BFBR/MBC system showed a long-term effective treatment outcome with low fluctuation in the concentrations of residual Ca²⁺ and F^-. The formed precipitates were characterized by SEM, XPS, XRD, and FTIR. The defluorination mechanisms of BFBR/MBC system were defined as the chemisorption and induced crystallization of Ca₅(PO₄)₃F on the MBC surface. As a feasible, economical, and environment-friendly technique, the method has a long-term value, which suggests promising applications in F^- removal and resourceful treatment.

Experimental Study on Sand Stabilization Using Bio-Cementation with Wastepaper Fiber Integration

Recently, green materials and technologies have received considerable attention in geotechnical engineering. One of such techniques is microbially-induced carbonate precipitation (MICP). In the MICP process, CaCO₃ is achieved bio-chemically within the soil, thus enhancing the strength and stiffness. The purpose of this study is to introduce the wastepaper fiber (WPF) onto the MICP (i) to study the mechanical properties of MICP-treated sand with varying WPF content (0–8%) and (ii) to assess the freeze–thaw (FT) durability of the treated samples. Findings revealed that the ductility of the treated samples increases with the increase in WPF addition, while the highest UCS is found with a small fiber addition. The results of CaCO₃ content suggest that the WPF addition enhances the immobilization of the bacteria cells, thus yielding the precipitation content. However, shear wave velocity analysis indicates that a higher addition of WPF results in rapid deterioration of the samples when subjected to freeze–thaw cycles. Microscale analysis illuminates that fiber clusters replace the solid bonding at particle contacts, leading to reduced resistance to freeze–thaw damage. Overall, the study demonstrates that as a waste material, WPF could be sustainably reused in the bio-cementation.

Microbially induced calcium precipitation based simultaneous removal of fluoride, nitrate, and calcium by Pseudomonas sp. WZ39: Mechanisms and nucleation pathways

A simultaneous denitrifying and mineralizing bacterium, Pseudomonas sp. WZ39 was isolated for fluoride (F^-), nitrate (NO₃^--N), and calcium (Ca²⁺) removal. Strain WZ39 exhibited a remarkable defluoridation efficiency of 87.49% under a pH of 6.90, F^- and Ca²⁺ concentration of 1.99 and 201.88 mg L^-1, respectively. EEM, SEM-EDS, XRD, and FTIR analyses elucidated the chemical adsorption and co-precipitation with calcium salt contributed to the removal of F^-. The mechanisms of biomineralization were also investigated by determining the role of bound and unbound extracellular polymeric substances (EPS), cell wall, and calcium channel in nucleation. The results showed that bacteria can promote nucleation on the templates of cell walls or EPS through the electrostatic effect. The presence of the calcium channel blocker inhibited the transport of intracellular Ca²⁺ to the extracellular environment. The outcome of the present research can provide a theoretical basis for the understanding of MICP phenomenon and the efficient treatment of F^- containing groundwater.

Isolation of biosynthetic crystals by microbially induced calcium carbonate precipitation and their utilization for fluoride removal from groundwater

Biosynthetic crystals (BC) were prepared through microbially induced calcium carbonate precipitation (MICP) for fluoride (F^-) removal from the groundwater. Batch experiments were conducted to evaluate the fluoride adsorption capacity and the impacts of critical factors (organic matter, pH, initial fluoride concentration and BC dosage) on defluorination efficiency of BC. The maximum adsorption amount and defluorination efficiency were recorded as 5.10 mg g^-1 and 98.24%, respectively. The adsorption kinetics and isotherms studies showed that pseudo-second-order kinetic model and Freundlich isotherm model were best fitting to the reaction. Adsorption thermodynamic parameters indicated a spontaneous, endothermic and thermodynamically favorable adsorption process. Moreover, the mechanism of F^- removal by BC was further analyzed by SEM, XPS, XRD and FTIR. The method can cope with the problem of applying the external organic substances in MICP, and avoid the microbial safety risk in the effluent. As an economically and environmentally friendly adsorbent, BC can be used for F^- removal from groundwater.