Colonization dynamics of biofilm-associated ciliate morphotypes at different flow velocities

Competition Increases Risk of Species Extinction during Extreme Warming

AbstractTemperature and interspecific competition are fundamental drivers of community structure in natural systems and can interact to affect many measures of species performance. However, surprisingly little is known about the extent to which competition affects extinction temperatures during extreme warming. This information is important for evaluating future threats to species from extreme high-temperature events and heat waves, which are rising in frequency and severity around the world. Using experimental freshwater communities of rotifers and ciliates, this study shows that interspecific competition can lower the threshold temperature at which local extinction occurs, reducing time to extinction during periods of sustained warming by as much as 2 weeks. Competitors may lower extinction temperatures by altering biochemical characteristics of the natural environment that affect temperature tolerance (e.g., levels of dissolved oxygen, nutrients, and metabolic wastes) or by accelerating population decline through traditional effects of resource depletion on life history parameters that affect population growth rates. The results suggest that changes in community structure in space and time could drive variability in upper thermal limits.

Microbial Community Colonization Process Unveiled through eDNA-PFU Technology in Mesocosm Ecosystems

Microbial communities are essential components of aquatic ecosystems and are widely employed for the detection, protection, and restoration of water ecosystems. The polyurethane foam unit (PFU) method, an effective and widely used environmental monitoring technique, has been improved with the eDNA-PFU method, offering efficiency, rapidity, and standardization advantages. This research aimed to explore the colonization process of microbial communities within PFUs using eDNA-PFU technology. To achieve this, we conducted ten-day monitoring and sequencing of microbial communities within PFUs in a stable and controlled artificial aquatic ecosystem, comparing them with water environmental samples (eDNA samples). Results showed 1065 genera in eDNA-PFU and 1059 in eDNA, with eDNA-PFU detecting 99.95% of eDNA-identified species. Additionally, the diversity indices of bacteria and eukaryotes in both methods showed similar trends over time in the colonization process; however, relative abundance differed. We further analyzed the colonization dynamics of microbes in eDNA-PFU and identified four clusters with varying colonization speeds. Notably, we found differences in colonization rates between bacteria and eukaryotes. Furthermore, the Molecular Ecological Networks (MEN) showed that the network in eDNA-PFU was more modular, forming a unique microbial community differentiated from the aquatic environment. In conclusion, this study, using eDNA-PFU, comprehensively explored microbial colonization and interrelationships in a controlled mesocosm system, providing foundational data and reference standards for its application in aquatic ecosystem monitoring and beyond.

Circadian (re)colonisation dynamics of macroinvertebrates in an isolated karst spring

Freshwater ecosystems, especially springs, are highly sensitive to environmental changes. They are also excellent natural laboratories because of their stable conditions, reducing the number of variables to be considered in field studies. We examined the composition, dynamics and colonisation patterns of macroinvertebrates with respect to canopy coverage and time of day in which available areas are actively colonised. We used artificial substrates that mimicked the natural habitat structure at an isolated karst spring and recovered exposed substrates every 12 h. Physico-chemical parameters of water did not differ significantly regardless of canopy cover. The most numerous representatives and the pioneering champions were larvae of Baetidae (Ephemeroptera) and Chironomidae (Diptera). Simuliidae were also among the most successful pioneering species. Most observed groups more actively colonised substrates in the closed canopy area. Oligochaeta and Gammarus fossarum were more numerous on substrates in the open canopy area. Individuals of all analysed groups showed day-night migration patterns and were more active at night. Coleoptera (Elmis sp.) were the poorest (re)colonisers among the analysed taxa.

Diversity of protist genera in periphyton of tufa-depositing karstic river

Purpose

In aquatic ecosystems, protists play a crucial role and cover numerous ecological functions. The karstic Krka River (Croatia) is a unique hotspot for high diversity of aquatic organisms, especially protists. The main objective of the present study was to obtain a detailed overview of the protist community structure in the periphyton of the Krka River and to determine the differences in protist diversity along the river.

Methods

Protist diversity was detected by amplicon sequencing of the hypervariable region V9 of the 18S rRNA gene, using the universal eukaryotic primer pair.

Results

The three main groups of protists were as follows: Ciliophora, Cercozoa, and Bacillariophyta. In terms of abundance of protist OTUs, the shade plot revealed an evident difference from the upstream to downstream river section, which increased between locations from Krka spring to Skradinski buk. Diversity was explored using measures of alpha and beta diversity. Alpha diversity showed an increasing trend in the downstream direction of the river. The location effect, or clustering/grouping of samples by location, was confirmed by the PERMANOVA permutation test of beta diversity.

Conclusion

The combination of alpha and beta diversity can help provide deeper insight into the study of diversity patterns, but also point out to decline in species diversity and allow for effective ways to protect aquatic karst habitats in future management.

Colonization dynamics in body-size spectrum of protozoan periphytons for marine bioassessment using two modified sampling systems

The body-size spectrum of microperiphytons has been proved to be a powerful tool for bioassessment. To explore colonization dynamics in body-size spectrum of periphytic protozoa in two modified sampling systems of both glass slide (mGS) and polyurethane foam unit (mPFU), a 28-day colonization survey was conducted in coastal waters of the Yellow Sea, China. A total of 7 body-size ranks were identified from 62 species, with 7 ranks (60 species) in the mGS and 6 ranks (37 species) in the mPFU system. The stable pattern with similar body-size spectra was found earlier in the mGS system than mPFU system during the colonization period. Both the trajectory and bootstrapped average analyses revealed that the colonization dynamics were significantly different in the body-size spectrum between the two methods. Based on our data, it suggests that the mGS system might be a better choice than the mPFU system for bioassessment in marine ecosystems.

Taxonomic and Functional Metrics of Ciliates and Amoeboid Protists in Response to Stream Revitalization

Tufa-depositing streams provide great microhabitat complexity and are therefore inhabited by various periphytic phagotrophic organisms such as ciliates and amoeboid protists. Recent removal of invasive plant species Ailanthus altissima (Mill.) Swinge from the Skradinski buk tufa barrier (Krka National Park, Croatia) resulted in changes in the barrier hydromorphology including the reactivation (revitalization) of dry streams. The objective of this study was to investigate: (1) the taxonomic and functional response of periphytic ciliates and amoeboid protists to stream revitalization by comparing taxonomic (i.e., abundance, species richness and diversity) and functional (i.e., functional diversity) metrics between revitalized (N) and control sites (C) during 1 and 2-months immersion period; (2) which environmental and (3) periphyton-associated factors shape the taxonomic and functional metrics and to what extent; (4) how duration of immersion affects taxonomic and functional metrics at revitalized sites. Our results showed that taxonomic and functional metrics of ciliates and amoeboid protists responded to the prevailing conditions characteristic of revitalized tufa-depositing streams: changing hydrology (occasional high flow or drought), soil drainage, and extensive inorganic matter, i.e., tufa deposition, although their responses were somewhat different. The two assemblages also showed different responses of taxonomic and functional metrics with respect to immersion duration: while the taxonomic and functional diversity of ciliates at N sites increased with longer immersion, indicating niche diversification, those of amoeboid protists hardly changed with time. Our results suggest that a comprehensive analysis of taxonomic and functional metrics of ciliates and amoeboid protists could be a good proxy for assessing revitalization of tufa-depositing streams. However, the temporal component should always be considered when conducting such studies, as the colonization processes of ciliates and amoeboid protists are quite complex, especially in tufa-depositing streams.

Periphytic Ciliate Communities in Lake Ecosystem of Temperate Riverine Floodplain: Variability in Taxonomic and Functional Composition and Diversity with Seasons and Hydrological Changes

Periphytic ciliate communities of riverine floodplains have hardly been studied, although they play an important role in aquatic food webs and contribute to the overall ecosystem functioning. In this study we analyzed the taxonomic and functional composition and diversity of these communities across all seasons and hydrological phases. The study was conducted in a floodplain lake, a part of the large natural Danube floodplain, from February 2015 to September 2016. We found that higher temperature and hydrologically stable conditions during the lake isolation phase, when a high amount of suspended food is available, result in the highest ciliate abundances and dominance of relatively large suspension-feeding ciliates, mainly peritrichs, which could serve as good bioindicators for detecting disturbances in river-floodplain ecosystems. During the flow pulse phase, associated with lower temperatures, and during the phase of extreme floods, when the availability of suspended food was largely reduced, small surface-feeding ciliates prevailed in the periphyton. Further, while the total ciliate abundance was the lowest, the highest taxonomic and functional diversity was found, especially during an intermediate level of hydrological connectivity (flow pulse). Our results confirm the importance of different levels of hydrological connectivity for maintaining biodiversity in riverine floodplains and add to a growing awareness of the need to preserve the natural hydrological regimes of large rivers.

Diversity and Distribution of Peritrich Ciliates on the Snail Physa acuta Draparnaud, 1805 (Gastropoda: Physidae) in a Eutrophic Lotic System

Bianca Sartini, Roberto Marchesini, Sthefane D ´ávila, Marta D'Agosto, and Roberto Júnio Pedroso Dias (2018) Freshwater gastropods represent good models for the investigation of epibiotic relationships because their shells act as hard substrates, offering a range of microhabitats that peritrich ciliates can occupy. In the present study we analyzed the community composition and structure of peritrich epibionts on the basibiont freshwater gastropod Physa acuta. We also investigated the spatial distribution of these ciliates on the shells of the basibionts, assuming the premise that the shell is a topologically complex substrate. Among the 140 analyzed snails, 60.7% were colonized by peritrichs. We observed seven peritrich species: Epistylis plicatilis and Epistylis sp. (Epistylididae); Opercularia articulata (Operculariidae); Carchesium polypinum, Vorticella campanula and Vorticella sp. (Vorticellidae) and Thuricola kellicottiana (Vaginicollidae). We observed a high prevalence of epibiosis (> 60%) when all species of ciliates were considered conjunctly. However, the prevalence was low (1-58%) when each species was considered separately, reflecting their aggregate distribution pattern. The most prevalent species were Epistylis sp. (58.60%), Vorticella sp. (14.30%) and O. articulata (13.60%). Although the epibionts were distributed through the shell's entire extension, we observed greater values of abundance, density, diversity and dominance on the dorsal surface. Only Epistylis sp. was widely distributed on the ventral surface. We also observed that the peritrichs predominantly occupied the areas of the shell delimited by the sutures. We interpreted these distribution patterns considering that the peritrichs select their attachment sites under pressures related to basibiont behavior, physical forces that may dislocate them and protective characteristics of the shell's areas.

Mitigation of marine biofouling on tubes of open rack vaporizers using electromagnetic fields

This study quantitatively evaluates the antifouling action of the continuous physical treatment with electromagnetic fields (EMFs) of seawater used as heat exchanger fluid in an open rack vaporizer (ORV) pilot plant to reduce the growth of biofouling on external rib-tube surfaces. The results demonstrate that the biofilm adhered on the treated rib-tubes was reduced by 33% in thickness and by 44% in dissolved solids regarding the biofilm adhered on the untreated control rib-tubes. The lower conductivity and Ca(2+) and Mg(2+) ionic content in the effluent of the treated seawater confirmed that the EMFs accelerated the process of ionic calcium nucleation and precipitation as calcium carbonate. The precipitation of ions dissolved affected the inter-molecular interactions among extracellular polymers, thereby weakening the biofouling film matrix and reducing its adhesion capacity. The drag of small particles by the flow of seawater had an erosive action and decreased the biofouling film thickness. Consequently, the antifouling methods treatment with EMFs allowed reduce the negative effect that the biofouling have for the heat transfer equipment used in the regasification process and keep the highest techno-economic operating conditions.

An approach to bioassessment of water quality using diversity measures based on species accumulative curves

Traditional community-based bioassessment is time-consuming because they rely on full species-abundance data of a community. To improve bioassessment efficiency, the feasibility of the diversity measures based on species accumulative curves for bioassessment of water quality status was studied based on a dataset of microperiphyton fauna. The results showed that: (1) the species accumulative curves well fitted the Michaelis-Menten equation; (2) the β- and γ-diversity, as well as the number of samples to 50% of the maximum species number (Michaelis-Menten constant K), can be statistically estimated based on the formulation; (3) the rarefied α-diversity represented a significant negative correlation with the changes in the nutrient NH4-N; and (4) the estimated β-diversity and the K constant were significantly positively related to the concentration of NH4-N. The results suggest that the diversity measures based on species accumulative curves might be used as a potential bioindicator of water quality in marine ecosystems.

An approach to determining functional parameters of microperiphyton fauna in colonization surveys for marine bioassessment based on rarefaction curves

The functional parameters, i.e., the estimated equilibrium species number (S eq), the colonization rate constant, and the time taken to reach 90 % of S eq (T 90), of microperiphyton fauna have been widely used to determine the water quality status in aquatic ecosystems. The objective of this investigation was to develop a protocol for determining functional parameters of microperiphyton fauna in colonization surveys for marine bioassessment based on rarefaction and regression analyses. The temporal dynamics in species richness of microperiphyton fauna during the colonization period was analyzed based on a dataset of periphytic ciliates in Chinese coastal waters of the Yellow Sea. The results showed that (1) based on observed species richness and estimated maximum species numbers, a total of 16 glass slides were required in order to achieve coefficients of variation of <5 % in the functional parameters; (2) the rarefied average species richness and functional parameters showed weak sensitivity to sampling effort; (3) the temporal variations in average species richness were well-fitted to the MacArthur-Wilson model; and (4) the sampling effort of ~8 glass slides was sufficient to achieve coefficients of variation of <5 % in equilibrium average species number (AvS eq), colonization rate (AvG), and the time to reach 90 % of AvS eq (AvT 90) based on the average species richness. The findings suggest that the AvS eq, AvG, and AvT 90 values based on rarefied average species richness of microperiphyton might be used as reliable ecological indicators for the bioassessment of marine water quality in coastal habitats.

An approach to detecting species diversity of microfaunas in colonization surveys for marine bioassessment based on rarefaction curves

The objective of this study was to measure α-, β- and γ-diversity of microfaunas with different ages in colonization surveys using rarefaction-modeling methods. A dataset was complied based on a microperiphyton survey in coastal waters of the Yellow Sea, near Qingdao. The analyses showed that: (1) there was a strong residual influence of sampling effort on β- and γ-diversity after rarefaction, especially for the young communities; (2) the rarefaction curves were well fitted to the Michaelis-Menten equation, and allow modeling and removing the residual influence of sampling effort on β- and γ-diversity; and (3) the estimated values of α-, β- and γ-diversity of a community based on the rarefaction-modeling method were independent of the influence of sampling effort. The results suggest that this approach may be used as a feasible tool to detect α-, β- and γ-diversity without the influence of sampling effort in microfauna colonization surveys for marine bioassessment.

Colonization dynamics of ciliate morphotypes modified by shifting sandy sediments

Sandy stream-bed sediments colonized by a diverse ciliate community are subject to various disturbance regimes. In microcosms, we investigated the effect of sediment shifting on the colonization dynamics of 3 ciliate morphotypes differing in morphology, behavior and feeding strategy. The dynamics of the ciliate morphotypes inhabiting sediment pore water and overlying water were observed at 3 sediment shifting frequencies: (1) stable sediments, (2) periodically shifting sediments such as migrating ripples, and (3) continuously shifting sediments as occurring during scour events of the uppermost sediment. Sediment shifting significantly affected the abundance and growth rate of the ciliate morphotypes. The free-swimming filter feeder Dexiostoma campylum was vulnerable to washout by sediment shifting since significantly higher numbers occurred in the overlying water than in pore water. Abundance of D. campylum only increased in pore water of stable sediments. On the contrary, the vagile grasper feeder Chilodonella uncinata and the sessile filter feeder Vorticella convallaria had positive growth rates and successfully colonized sediments that shifted periodically and continuously. Thus, the spatio-temporal pattern of sediment dynamics acts as an essential factor of impact on the structure, distribution and function of ciliate communities in sand-bed streams.

Do early colonization patterns of periphytic ciliate fauna reveal environmental quality status in coastal waters?

The feasibility for developing a protocol to assess marine water quality based on early colonization features of periphytic ciliate fauna was studied in coastal waters of the Yellow Sea, northern China. The ciliate communities with 3-28-day ages were collected monthly at four stations with a spatial gradient of environmental stress from August 2011 to July 2012. The spatial patterns of both early (3-7 days) and mature (>10 days) communities of the ciliates represented significant differences among the four stations, and were significantly correlated with environmental variables, especially nutrients and chemical oxygen demand (COD). Seven and eight dominant species were significantly correlated with nutrients or COD within the early and mature communities, respectively. The species richness indices were strongly correlated with nutrients, especially in mature communities. These findings suggest that it is possible to assess the status of water quality using early colonization features of periphytic ciliate fauna in coastal waters.

Use of biofilm-dwelling ciliate communities to determine environmental quality status of coastal waters

It has increasingly been recognized that the ecological features of protozoan communities have many advantages as a favorable bioindicator to evaluate environmental stress and anthropogenic impact in many aquatic ecosystems. The ability of biofilm-dwelling ciliate communities for assessing environmental quality status was studied, using glass slides as an artificial substratum, during a 1-year cycle (August 2011-July 2012) in coastal waters of the Yellow Sea, northern China. The samples were collected monthly at a depth of 1m from four sampling stations with a spatial gradient of environmental stress. Environmental variables, e.g., salinity, dissolved oxygen (DO), chemical oxygen demand (COD), nitrate nitrogen (NO3-N), ammonium nitrogen (NH4-N) and soluble reactive phosphates (SRP), were measured synchronously for comparison with biotic parameters. Results showed that: (1) the community structures of the ciliates represented significant differences among the four sampling stations; (2) spatial patterns of the ciliate communities were significantly correlated with environmental variables, especially COD and the nutrients; (3) five dominant species (Hartmannula angustipilosa, Metaurostylopsis sp.1, Discocephalus ehrenbergi, Stephanopogon minuta and Pseudovorticella paracratera) were significantly correlated with nutrients or COD; and (4) the species richness measure was significantly correlated with the nutrient NO3-N. It is suggested that biofilm-dwelling ciliate communities might be used as a potentially robust bioindicator for discriminating environmental quality status in coastal waters.

Influence of enumeration time periods on analyzing colonization features and taxonomic relatedness of periphytic ciliate communities using an artificial substratum for marine bioassessment

Colonization features and taxonomic relatedness measures of ciliate communities have been used as useful indicators for marine bioassessment. The influence of enumeration time periods on analyzing colonization features measures of periphytic ciliate communities was studied in coastal waters of the Yellow Sea, northern China, during the period of May-June 2010. Ciliated protozoan samples were collected at depths of 1 m using an artificial substratum and were analyzed with different enumeration schemes. The ciliate species were identified using living observation and silver impregnation. Data analyses were conducted using a range of multivariate statistical routines. Enumeration time periods represented a strong influence on analyzing both colonization and taxonomic relatedness features of periphytic ciliate communities, although no significant changes occurred in colonization patterns between two enumeration schemes (within 24 and 24-48 h after sampling). The delayed enumeration (within 24-48 h) may result in the species richness, individual abundance, colonization rate decreasing to standard errors of >10 % in samples with almost all colonization ages, and in the similarities of the communities being reduced to 11-38 %. However, the species biodiversity (e.g., species diversity and evenness, except species richness) and taxonomic relatedness (taxonomic diversity, taxonomic distinctness and average taxonomic distinctness, except variation in taxonomic distinctness) measures of periphytic ciliate communities were weakly sensitive to disturbance from the delayed enumeration, achieving standard errors of <10 and <5 % during the colonization periods, respectively. These results suggest that the enumeration should be completed as soon as possible within 24 h after sampling to analyze colonization and taxonomic relatedness features of periphytic ciliate communities, and that the species diversity and taxonomic distinctness measures can be used on a robust bioindicator with weak dependence on enumeration time limits for monitoring programs and ecological investigations in marine ecosystems.

Influence of sampling sufficiency on biodiversity analysis of microperiphyton communities for marine bioassessment

INTRODUCTION

With quick responses to environmental changes, easy sampling, relative immobility, increasing availability of easily used taxonomic references, and allowing standardization for temporal and spatial comparisons, the biodiversity measures of microperiphyton communities have widely been accepted as useful indicators to evaluate environmental stress and anthropogenic impact.

MATERIALS AND METHODS

The influence of sampling sufficiency for biodiversity analysis of microperiphyton communities was studied using a range of statistical methods in coastal waters of the Yellow Sea, northern China, from May to June 2010. Samples were collected from two depths using an artificial substrate.

RESULTS

Sampling sizes represented a significant influence on biodiversity analysis of microperiphyton communities, e.g., 20 slide replicates (350 cm(2)) were sufficient for the microperiphyton communities at both depths, while 10 slide replicates (175 cm(2)) could meet the sampling strategy only for the samples with colonization times of 10 days or more at a depth of 1 m for recovering 90% species during the study period. Otherwise, more slide replicates were required with the increase of water depths and shortening colonization times for recovering microperiphyton species, e.g., for recovering 90% species of a "mature" microperiphyton community (>10 days), ∼10 slide replicates (∼175 cm(2)) were sufficient at a depth of 1 m, while for the "young" samples (>10 days) much more (15-30) slide replicates were required at both depths in this study. Furthermore, to achieve <10% standard errors, six (105 cm(2)) and nine (∼160 cm(2)) slide replicates were required for biodiversity analysis of the microperiphyton communities with various colonization times at depths of 1 and 3 m during the summer season, respectively.

CONCLUSION

These results suggest that sampling sizes represented a significant influence on biodiversity analysis of microperiphyton communities for monitoring programs and ecological conservation researches in marine ecosystems.

An approach to determining the sampling effort for analyzing biofilm-dwelling ciliate colonization using an artificial substratum in coastal waters

A new approach to determining sampling effort for analyzing biofilm-dwelling ciliate colonization was studied in the coastal waters of the Yellow Sea, northern China, from May to June 2010. The optimal sample size for evaluating biofilm-dwelling ciliate colonization increased with shortening exposure time, and can be determined according to the probability of recovering those species with a specified cumulative contribution to communities. More slide-replicates were required at a depth of 3 m than at 1 m to recover equivalent proportions of the ciliate communities. For routine colonization dynamics analyses, 10 slide-replicates (175 cm(2)) were sufficient to achieve a 95% probability of recovering those species with a cumulative contribution of >90% to the ciliate communities at a depth of 1 m. These results suggest that 10 slide-replicates immersed at a depth of 1 m may be an optimal sampling strategy for analyzing the colonization dynamics of biofilm-dwelling ciliate communities in marine habitats.