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Cheng T, Zhang T, Zhang P, He X, Sadiq FA, Li J, Sang Y, Gao J. The complex world of kefir: Structural insights and symbiotic relationships. Compr Rev Food Sci Food Saf 2024; 23:e13364. [PMID: 38847746 DOI: 10.1111/1541-4337.13364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Revised: 04/04/2024] [Accepted: 05/21/2024] [Indexed: 06/13/2024]
Abstract
Kefir milk, known for its high nutritional value and health benefits, is traditionally produced by fermenting milk with kefir grains. These grains are a complex symbiotic community of lactic acid bacteria, acetic acid bacteria, yeasts, and other microorganisms. However, the intricate coexistence mechanisms within these microbial colonies remain a mystery, posing challenges in predicting their biological and functional traits. This uncertainty often leads to variability in kefir milk's quality and safety. This review delves into the unique structural characteristics of kefir grains, particularly their distinctive hollow structure. We propose hypotheses on their formation, which appears to be influenced by the aggregation behaviors of the community members and their alliances. In kefir milk, a systematic colonization process is driven by metabolite release, orchestrating the spatiotemporal rearrangement of ecological niches. We place special emphasis on the dynamic spatiotemporal changes within the kefir microbial community. Spatially, we observe variations in species morphology and distribution across different locations within the grain structure. Temporally, the review highlights the succession patterns of the microbial community, shedding light on their evolving interactions.Furthermore, we explore the ecological mechanisms underpinning the formation of a stable community composition. The interplay of cooperative and competitive species within these microorganisms ensures a dynamic balance, contributing to the community's richness and stability. In kefir community, competitive species foster diversity and stability, whereas cooperative species bolster mutualistic symbiosis. By deepening our understanding of the behaviors of these complex microbial communities, we can pave the way for future advancements in the development and diversification of starter cultures for food fermentation processes.
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Affiliation(s)
- Tiantian Cheng
- Department of Food Science and Technology, Hebei Agricultural University, Baoding, Hebei, China
| | - Tuo Zhang
- Department of Food Science and Technology, Hebei Agricultural University, Baoding, Hebei, China
| | - Pengmin Zhang
- Department of Food Science and Technology, Hebei Agricultural University, Baoding, Hebei, China
| | - Xiaowei He
- Department of Food Science and Technology, Hebei Agricultural University, Baoding, Hebei, China
| | - Faizan Ahmed Sadiq
- Advanced Therapies Group, School of Dentistry, Cardiff University, Cardiff, UK
| | - Jiale Li
- Department of Food Science and Technology, Hebei Agricultural University, Baoding, Hebei, China
| | - Yaxin Sang
- Department of Food Science and Technology, Hebei Agricultural University, Baoding, Hebei, China
| | - Jie Gao
- Department of Food Science and Technology, Hebei Agricultural University, Baoding, Hebei, China
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Xiong F, Dai T, Zheng Y, Wen D, Li Q. Enhanced AHL-mediated quorum sensing accelerates the start-up of biofilm reactors by elevating the fitness of fast-growing bacteria in sludge and biofilm communities. WATER RESEARCH 2024; 257:121697. [PMID: 38728787 DOI: 10.1016/j.watres.2024.121697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 04/16/2024] [Accepted: 04/29/2024] [Indexed: 05/12/2024]
Abstract
Quorum sensing (QS)-based manipulations emerge as a promising solution for biofilm reactors to overcome challenges from inefficient biofilm formation and lengthy start-ups. However, the ecological mechanisms underlying how QS regulates microbial behaviors and community assembly remain elusive. Herein, by introducing different levels of N-acyl-homoserine lactones, we manipulated the strength of QS during the start-up of moving bed biofilm reactors and compared the dynamics of bacterial communities. We found that enhanced QS elevated the fitness of fast-growing bacteria with high ribosomal RNA operon (rrn) copy numbers in their genomes in both the sludge and biofilm communities. This led to notably increased extracellular substance production, as evidenced by strong positive correlations between community-level rrn copy numbers and extracellular proteins and polysaccharides (Pearson's r = 0.529-0.830, P < 0.001). Network analyses demonstrated that enhanced QS significantly promoted the ecological interactions among taxa, particularly cooperative interactions. Bacterial taxa with higher network degrees were more strongly correlated with extracellular substances, suggesting their crucial roles as public goods in regulating bacterial interactions and shaping network structures. However, the assembly of more cooperative communities in QS-enhanced reactors came at the cost of decreased network stability and modularity. Null model and dissimilarity-overlap curve analysis revealed that enhanced QS strengthened stochastic processes in community assembly and rendered the universal population dynamics more convergent. Additionally, these shaping effects were consistent for both the sludge and biofilm communities, underpinning the planktonic-to-biofilm transition. This work highlights that QS manipulations efficiently drive community assembly and confer specialized functional traits to communities by recruiting taxa with specific life strategies and regulating interspecific interactions. These ecological insights deepen our understanding of the rules governing microbial societies and provide guidance for managing engineering ecosystems.
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Affiliation(s)
- Fuzhong Xiong
- College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Tianjiao Dai
- School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing 100083, China
| | - Yuhan Zheng
- College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Donghui Wen
- College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China.
| | - Qilin Li
- Department of Civil and Environmental Engineering, Rice University, Houston, TX 77005, USA
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Zhou W, Hao J, Guo Y, Zhao C, Zhang M, Zhang S, Han F. Revealing bioresponses of biofilm and flocs to salinity gradient in halophilic biofilm reactor. BIORESOURCE TECHNOLOGY 2024; 401:130727. [PMID: 38643952 DOI: 10.1016/j.biortech.2024.130727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 04/09/2024] [Accepted: 04/18/2024] [Indexed: 04/23/2024]
Abstract
Understanding the different biological responses to salinity gradient between coexisting biofilm and flocs is crucial for regulating the ecological function of biofilm system. This study investigated performance, dynamics, and community assembly of biofilm system under 3 %-7% salinity gradient. The removal efficiency of NH4+-N remained stable and exceeded 93 % at 3 %-6% salinity, but decreased to below 80 % at 7 % salinity. The elevated salinity promoted the synthesis of extracellular polymer substrates, inhibited microbial respiration, and significantly regulated the microbial community structure. Compared to flocs, biofilm exhibited greater species diversity and richer Nitrosomonas. It was found diffusion limitations dominated the microbial community assembly under the salinity gradient. And microbial network revealed positive interactions predominated the microbial relationships, designating norank Spirochaetaceae, unclassified Micrococcales, Corynebacterium, and Pusillimonas as keystone species. Moreover, distinct salinity preferences in nitrogen transformation-related genes were observed. This study can improve the understanding to the regulation of biofilm systems to salt stresses.
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Affiliation(s)
- Weizhi Zhou
- School of Civil Engineering, Shandong University, Jinan, Shandong 250002, China; School of Environmental Science and Engineering, Shandong University, Qingdao, Shandong, China
| | - Jie Hao
- School of Environmental Science and Engineering, Shandong University, Qingdao, Shandong 266000, China; School of Environmental Science and Engineering, Shandong University, Qingdao, Shandong, China
| | - Yiting Guo
- School of Civil Engineering, Shandong University, Jinan, Shandong 250002, China; School of Environmental Science and Engineering, Shandong University, Qingdao, Shandong, China
| | - Chuanfu Zhao
- School of Civil Engineering, Shandong University, Jinan, Shandong 250002, China; School of Environmental Science and Engineering, Shandong University, Qingdao, Shandong, China
| | - Mengru Zhang
- School of Civil Engineering, Shandong University, Jinan, Shandong 250002, China; School of Environmental Science and Engineering, Shandong University, Qingdao, Shandong, China
| | - Shuhui Zhang
- School of Civil Engineering, Shandong University, Jinan, Shandong 250002, China; School of Environmental Science and Engineering, Shandong University, Qingdao, Shandong, China
| | - Fei Han
- School of Civil Engineering, Shandong University, Jinan, Shandong 250002, China; School of Environmental Science and Engineering, Shandong University, Qingdao, Shandong, China.
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Chen S, Liu C, Cao G, Li K, Huang J. Effect of salinity on biological nitrogen removal from wastewater and its mechanism. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:24713-24723. [PMID: 38499924 DOI: 10.1007/s11356-024-32417-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2023] [Accepted: 02/07/2024] [Indexed: 03/20/2024]
Abstract
The nitrogen discharge from saline wastewater will cause significant pollution to the environment. As a high-efficiency and low-cost treatment method, biological treatment has a promising application prospect in the removal of nitrogen from high-salt wastewater. However, the inhibitory effect of high salt on microorganisms increases the difficulty of its treatment. This review discusses the influence of salinity on the nitrogen removal process, considering both traditional and novel biological techniques. Common methods to enhance the effectiveness of biological nitrogen removal processes and their mechanisms of action in engineering practice and research, including sludge acclimation and inoculation of halophilic bacteria, are also introduced. An outlook on the future development of biological nitrogen removal processes for high-salt wastewater is provided to achieve environmentally friendly discharge of high-salt wastewater.
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Affiliation(s)
- Shiqi Chen
- College of Environment, Hohai University, Nanjing, 210098, China
| | - Cheng Liu
- College of Environment, Hohai University, Nanjing, 210098, China.
- Key Laboratory of Integrated Regulation and Resource Development of Shallow Lakes of Ministry of Education, Hohai University, Nanjing, 210098, China.
| | - Guoxun Cao
- College of Environment, Hohai University, Nanjing, 210098, China
| | - Ke Li
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan, 250101, China
| | - Junliang Huang
- College of Environment, Hohai University, Nanjing, 210098, China
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Li J, Zhang F, Ma B, Kong D, Hu Y, Chen G, Ruan Y. Characterization of simultaneous ammonium and nitrate removal and microbial communities in airlift reactor using 3-hydroxybutyrate-co-3-hydroxyvalerate (PHBV) as carbon source and biofilm carrier. BIORESOURCE TECHNOLOGY 2024; 393:130049. [PMID: 37995872 DOI: 10.1016/j.biortech.2023.130049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 11/07/2023] [Accepted: 11/15/2023] [Indexed: 11/25/2023]
Abstract
As a novel trend, solid carbon sources are applied to act as electron donors and biofilm carrier in biological denitrification process. In this study, simultaneous nitrate and ammonium removal process in an airlift sequencing batch reactor using 3-hydroxybutyrate-co-3-hydroxyvalerate (PHBV) as carbon source and biofilm carrier under intermittent aeration conditions was established to treat effluent of synthetic marine recirculating aquaculture system. The results showed that maximum nitrate and ammonia nitrogen removal rates of 0.45 and 0.09 kg m-3 d-1 were achieved. No significant nitrite accumulation was found during 200-day operation, while effluent dissolved organic carbon accumulation and particle size reduction significantly increased. Microbial community analysis and batch tests illuminate that the generated sludge and attached biofilm played important roles in nitrogen removal. This study demonstrates the potential mechanism for the nitrogen removal process mediated by 3-hydroxybutyrate-co-3-hydroxyvalerate and provide a new idea for the alternative solutions of solid carbon sources.
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Affiliation(s)
- Junchi Li
- Institute of Agricultural Bio-Environmental Engineering, College of Bio-Systems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China; The Rural Development Academy, Zhejiang University, Hangzhou 310058, China
| | - Fan Zhang
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou 310058, China
| | - Bin Ma
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Dedong Kong
- Institute of Digital Agriculture, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
| | - Yiming Hu
- Institute of Agricultural Bio-Environmental Engineering, College of Bio-Systems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China; The Rural Development Academy, Zhejiang University, Hangzhou 310058, China
| | - Guangsuo Chen
- The Rural Development Academy, Zhejiang University, Hangzhou 310058, China
| | - Yunjie Ruan
- Institute of Agricultural Bio-Environmental Engineering, College of Bio-Systems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China; The Rural Development Academy, Zhejiang University, Hangzhou 310058, China.
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Sasi R, Suchithra TV. Wastewater microbial diversity versus molecular analysis at a glance: a mini-review. Braz J Microbiol 2023; 54:3033-3039. [PMID: 37723328 PMCID: PMC10689596 DOI: 10.1007/s42770-023-01130-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2023] [Accepted: 09/10/2023] [Indexed: 09/20/2023] Open
Abstract
Microorganisms play a vital role in biological wastewater treatment by converting organic and toxic materials into harmless substances. Understanding microbial communities' structure, taxonomy, phylogeny, and metabolic activities is essential to improve these processes. Molecular microbial ecology employs molecular techniques to study community profiles and phylogenetic information since culture-dependent approaches have limitations in providing a comprehensive understanding of microbial diversity in a system. Genomic advancements such as DNA hybridization, microarray analysis, sequencing, and reverse sample genome probing have enabled the detailed characterization of microbial communities in wastewater treatment facilities. This mini-review summarizes the current state of knowledge on the diversity of microorganisms in wastewater treatment plants, emphasizing critical microbial processes such as nitrogen and phosphorus removal.
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Affiliation(s)
- R Sasi
- School of Biotechnology, National Institute of Technology Calicut, Kozhikode, Kerala, India, 673601
| | - T V Suchithra
- School of Biotechnology, National Institute of Technology Calicut, Kozhikode, Kerala, India, 673601.
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Meng F, Guo S, Zhang L, Lu Y, Li M, Tan Y, Zha K, Yuan S. Ecological mechanisms of biofilm development in the hybrid sludge-biofilm process: Implications for process start-up and optimization. WATER RESEARCH 2023; 245:120587. [PMID: 37717335 DOI: 10.1016/j.watres.2023.120587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Revised: 08/28/2023] [Accepted: 09/05/2023] [Indexed: 09/19/2023]
Abstract
The hybrid sludge-biofilm processes have been widely applied for the construction or upgradation of biological wastewater treatment process. Ecological mechanisms of biofilm development remain unclear in the hybrid ecosystem, because of the intricate interactive effects between sludge and biofilms. Herein, the establishment principles of biofilms with distinct coexisting sludge amounts were uncovered by varying sludge retention times (SRTs) from 5 to 40 days in the hybrid process. With the increasing of SRTs, biofilm biomass decreased with the increase of suspended sludge, resulting in lower biofilm proportion. As estimated by the Gompertz growth model, the increased sludge amounts (i.e., higher SRTs of 20 and 40 days) prolonged the initial colonization stage and decreased the specific development rate of biofilms when compared to lower sludge amounts with the shorter SRTs (i.e., 5 and 10 days). Null model analysis demonstrated that deterministic homogenous selection could facilitate the colonization and accumulation of biofilms with less coexisting sludge (SRT of 10 days). However, stochastic ecological drift and homogenizing dispersal dominated the colonization and accumulation stages of biofilms with more coexisting sludge (SRT of 20 days), respectively. The ecological networks reflected that positively-related taxa presented taxonomic relatedness, whereas high inconsistency of taxonomic relatedness was observed among aggregate forms or development stages as affected by varied SRTs. The high incidence of intra-taxa co-occurrence patterns suggested that taxa with similar ecological niches could be specifically selected in biofilms when being exposed with less coexisting sludge. This study uncovered ecological mechanisms of biofilm development driven by varying the SRTs of suspended sludge, which would help to propose appropriate strategies for the efficient start-up and optimization of the hybrid sludge-biofilm system.
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Affiliation(s)
- Fangang Meng
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, PR China; National Engineering Laboratory for Pollution Control and Waste Utilization in Livestock and Poultry Production, Changsha, Hunan 410125, PR China
| | - Sixian Guo
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, PR China; National Engineering Laboratory for Pollution Control and Waste Utilization in Livestock and Poultry Production, Changsha, Hunan 410125, PR China
| | - Lidan Zhang
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, PR China
| | - Yi Lu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, PR China
| | - Mengdi Li
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, PR China
| | - Yongtao Tan
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, PR China
| | - Keqi Zha
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, PR China
| | - Shasha Yuan
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, PR China; National Engineering Laboratory for Pollution Control and Waste Utilization in Livestock and Poultry Production, Changsha, Hunan 410125, PR China.
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Zhao X, Xie E. Reclaimed water influences bacterioplankton and bacteriobenthos communities differently in river networks. WATER RESEARCH 2023; 243:120389. [PMID: 37494747 DOI: 10.1016/j.watres.2023.120389] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 07/19/2023] [Indexed: 07/28/2023]
Abstract
Reclaimed water reuse is a promising strategy for addressing water scarcity; however, its potential ecological impact remains largely unknown. In particular, the differential effects of reclaimed water on microbial communities in various habitats remain poorly understood. Here, we aimed to elucidate the distinct effects of reclaimed water on bacterioplankton and bacteriobenthos communities in reclaimed water-receiving river networks from multiple perspectives, including community structure, co-occurrence patterns, assembly mechanisms, and nitrogen cycle function. Significant differences in microbial composition were observed between the plankton and benthic habitats, and the average numbers of amplicon sequence variants (ASVs) that originated from the wastewater treatment plants (WWTP) sites were 310.0 and 613.3, respectively, indicating a stronger association between WWTP and benthic habitats. Random forest and network co-occurrence analyses identified the genus Clostridium_sensu_stricto as a biomarker and key module hub. The assembly of bacteriobenthos communities was driven primarily by deterministic processes (58.74% for River-S and 58.94% for WWTP-S), whereas for bacterioplankton communities, this proportion was reduced to 18.02% (River-W) and 19.09% (WWTP-W). The qPCR revealed a large difference in abundance between the N cycling related genes of bacteriobenthos (average 2.47 × 106 copies/ng) and bacterioplankton (average 3.11 × 103 copies/ng) communities, and different interaction patterns with functional genes. Variance partitioning analysis (VPA) indicated that nitrogen was the most important pollutant, affecting the structure and ecological functions of microbial communities. Moreover, pathway analysis suggested that the reuse of reclaimed water may have enhanced the N-cycling functions of microbial communities and the emission of nitrous oxide.
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Affiliation(s)
- Xiaohui Zhao
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing 100038, PR China; Department of Water Ecology and Environment, China Institute of Water Resources and Hydropower Research, Beijing 100038, PR China
| | - En Xie
- College of Water Resources and Civil Engineering, China Agricultural University, 17 Qinghua Donglu, Beijing 100083, PR China; Engineering Research Center of Agricultural Water-Saving and Water Resources, Ministry of Education, China Agricultural University, Beijing 100083, PR China.
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Li J, Cai L, Lu H, Ma B, Chen G, Kong D, Hu Y, Ye Z, Ruan Y. Effects of Ion Combinations and Their Concentrations on Denitrification Performance and Gene Expressions of an Aerobic Strain Marinobacter Hydrocarbonoclasticus RAD-2. Microorganisms 2023; 11:1867. [PMID: 37630427 PMCID: PMC10456938 DOI: 10.3390/microorganisms11081867] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Revised: 07/17/2023] [Accepted: 07/18/2023] [Indexed: 08/27/2023] Open
Abstract
Salinity is one of the most important factors affecting the nitrogen-removal efficiency of denitrifying bacteria. A series of different ion combinations and salinity gradients were carried out to clarify the effects of ion types and concentrations on nitrogen removal by halophilic aerobic denitrifying bacteria RAD-2. Nitrate concentrations, nitrite concentrations, TAN concentrations, and OD600 were monitored to investigate their effects on denitrification in each group. The results showed that Na+, K+, and Cl- accelerated the denitrification process and improved nitrogen-removal efficiency at moderate additions, while Ca2+ and Mg2+ showed no significant effect. Na+ was effective alone, while K+ or Cl- needed to be combined with at least one of Na+, K+, or Cl- to achieve similar efficiency. The batch tests of salinity confirmed that the addition of a moderate concentration of NaCl/Na2SO4 could effectively improve nitrogen-removal efficiency, while excessive salinity might hinder denitrification metabolism. In the salinity range of 5~40‱, a 5‱ dosage might be the most economical method for strain RAD-2. Real-time PCR experiments on 17 key nitrogen metabolism-related genes revealed that chloride was widely involved in the nitrogen and carbon metabolism of microorganisms by altering cell osmotic pressure and opening ion channel proteins, thereby affecting the efficiency of denitrification. The results of this study may contribute to a better understanding of the different roles of various ions in aerobic denitrification and highlight the importance of salinity control in highly salted wastewater treatment.
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Affiliation(s)
- Junchi Li
- Institute of Agricultural Bio-Environmental Engineering, College of Bio-Systems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China; (J.L.); (Y.H.)
- The Rural Development Academy, Zhejiang University, Hangzhou 310058, China;
| | - Lei Cai
- Laboratory of Microbial Resources, College of Food Science and Biotechnology, Zhejiang Gongshang University, Hangzhou 310035, China;
| | - Huifeng Lu
- Department of Environmental Engineering, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China;
| | - Bin Ma
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China;
| | - Guangsuo Chen
- The Rural Development Academy, Zhejiang University, Hangzhou 310058, China;
| | - Dedong Kong
- Institute of Digital Agriculture, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; (D.K.); (Z.Y.)
| | - Yiming Hu
- Institute of Agricultural Bio-Environmental Engineering, College of Bio-Systems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China; (J.L.); (Y.H.)
- The Rural Development Academy, Zhejiang University, Hangzhou 310058, China;
| | - Ziran Ye
- Institute of Digital Agriculture, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; (D.K.); (Z.Y.)
| | - Yunjie Ruan
- Institute of Agricultural Bio-Environmental Engineering, College of Bio-Systems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China; (J.L.); (Y.H.)
- The Rural Development Academy, Zhejiang University, Hangzhou 310058, China;
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Fan D, Schwinghamer T, Liu S, Xia O, Ge C, Chen Q, Smith DL. Characterization of endophytic bacteriome diversity and associated beneficial bacteria inhabiting a macrophyte Eichhornia crassipes. FRONTIERS IN PLANT SCIENCE 2023; 14:1176648. [PMID: 37404529 PMCID: PMC10316030 DOI: 10.3389/fpls.2023.1176648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 05/24/2023] [Indexed: 07/06/2023]
Abstract
Introduction The endosphere of a plant is an interface containing a thriving community of endobacteria that can affect plant growth and potential for bioremediation. Eichhornia crassipes is an aquatic macrophyte, adapted to estuarine and freshwater ecosystems, which harbors a diverse bacterial community. Despite this, we currently lack a predictive understanding of how E. crassipes taxonomically structure the endobacterial community assemblies across distinct habitats (root, stem, and leaf). Methods In the present study, we assessed the endophytic bacteriome from different compartments using 16S rRNA gene sequencing analysis and verified the in vitro plant beneficial potential of isolated bacterial endophytes of E. crassipes. Results and discussion Plant compartments displayed a significant impact on the endobacterial community structures. Stem and leaf tissues were more selective, and the community exhibited a lower richness and diversity than root tissue. The taxonomic analysis of operational taxonomic units (OTUs) showed that the major phyla belonged to Proteobacteria and Actinobacteriota (> 80% in total). The most abundant genera in the sampled endosphere was Delftia in both stem and leaf samples. Members of the family Rhizobiaceae, such as in both stem and leaf samples. Members of the family Rhizobiaceae, such as Allorhizobium- Neorhizobium-Pararhizobium-Rhizobium were mainly associated with leaf tissue, whereas the genera Nannocystis and Nitrospira from the families Nannocystaceae and Nitrospiraceae, respectively, were statistically significantly associated with root tissue. Piscinibacter and Steroidobacter were putative keystone taxa of stem tissue. Most of the endophytic bacteria isolated from E. crassipes showed in vitro plant beneficial effects known to stimulate plant growth and induce plant resistance to stresses. This study provides new insights into the distribution and interaction of endobacteria across different compartments of E. crassipes Future study of endobacterial communities, using both culture-dependent and -independent techniques, will explore the mechanisms underlying the wide-spread adaptability of E. crassipesto various ecosystems and contribute to the development of efficient bacterial consortia for bioremediation and plant growth promotion.
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Affiliation(s)
- Di Fan
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Timothy Schwinghamer
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge, AB, Canada
| | - Shuaitong Liu
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Ouyuan Xia
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Chunmei Ge
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Qun Chen
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Donald L. Smith
- Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, Canada
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Yan F, Wang S, Huang Z, Liu Y, He L, Qian F. Microbial ecological responses of partial nitritation/anammox granular sludge to real water matrices and its potential application. ENVIRONMENTAL RESEARCH 2023; 226:115701. [PMID: 36931374 DOI: 10.1016/j.envres.2023.115701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Revised: 03/01/2023] [Accepted: 03/14/2023] [Indexed: 06/18/2023]
Abstract
Granular sludges are commonly microbial aggregates used to apply partial nitritation/anammox (PN/A) processes during efficient biological nitrogen removal from ammonium-rich wastewater. Considering keystone taxa of anammox bacteria (AnAOB) in granules and their sensitivity to unfavorable environments, it is essential to investigate microbial responses of autotrophic PN/A granules to real water matrices containing organic and inorganic pollutants. In this study, tap water, surface water, and biotreated wastewater effluents were fed into a series of continuous PN/A granular reactors, respectively, and the differentiation in functional activity, sludge morphology, microbial community structure, and nitrogen metabolic pathways was analyzed by integrating kinetic batch testing, size characterization, and metagenomic sequencing. The results showed that feeding of biotreated wastewater effluents causes significant decreases in nitrogen removal activity and washout of AnAOB (dominated by Candidatus Kuenenia) from autotrophic PN/A granules due to the accumulation of heavy metals and formation of cavities. Microbial co-occurrence networks and nitrogen cycle-related genes provided evidence for the high dependence of symbiotic heterotrophs (such as Proteobacteria, Chloroflexi, and Bacteroidetes) on anammox metabolism. The enhancement of Nitrosomonas nitritation in the granules would be considered as an important contributor to greenhouse gas (N2O) emissions from real water matrices. In a novel view on the application of microbial responses, we suggest a bioassay of PN/A granules by size characterization of red-color cores in ecological risk assessment of water environments.
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Affiliation(s)
- Feng Yan
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, No. 99 Xuefu Road, Suzhou, 215009, People's Republic of China
| | - Suqin Wang
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, No. 99 Xuefu Road, Suzhou, 215009, People's Republic of China
| | - Ziheng Huang
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, No. 99 Xuefu Road, Suzhou, 215009, People's Republic of China
| | - Yaru Liu
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, No. 99 Xuefu Road, Suzhou, 215009, People's Republic of China
| | - Lingli He
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, No. 99 Xuefu Road, Suzhou, 215009, People's Republic of China
| | - Feiyue Qian
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, No. 99 Xuefu Road, Suzhou, 215009, People's Republic of China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, No. 99 Xuefu Road, Suzhou, 215009, People's Republic of China.
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12
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Yuan S, Guo S, Tan Y, Li M, Lu Y, Xu R, Tawfik A, Zhou Z, Chen J, Liu W, Meng F. Deciphering community assembly and succession in sequencing batch moving bed biofilm reactor: Differentiation between attached and suspended communities. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 873:162448. [PMID: 36828058 DOI: 10.1016/j.scitotenv.2023.162448] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Revised: 02/08/2023] [Accepted: 02/20/2023] [Indexed: 06/18/2023]
Abstract
Elucidating community assembly and succession is crucial to understanding the ecosystem functioning. Herein, the ecological processes underpinning community assembly and succession were studied to uncover the respective ecological functions of attached biofilms and suspended biomass in a sequencing batch moving bed biofilm reactor. Compared with suspended biomass, attached biofilms presented higher relative abundances of Nitrospira (2.94 %) and Nitrosomonas (1.25 %), and contributed to 66.89 ± 11.37 % and 68.11 ± 12.72 % of nitrification and denitrification activities, respectively. The microbial source tracking result demonstrated that early formation of suspended biomass was dominated by the seeding effect of detached biofilms in the start-up period (days 0-30), while self-growth of previous suspended biomass was eventually outcompeted the seeding effect when the reactor stabilized (days 31-120). Null model and ecological network analysis further suggested distinctive ecological processes underpinning the differentiation between attached and suspended communities in the same reactor. Specifically, in the start-up period, positive interactions facilitated early formation of attached (73.84 %) and suspended communities (59.41 %), while homogenous selection (88.89 %) and homogenizing dispersal (65.71 %) governed assembly of attached and suspended communities, respectively. When the reactor stabilized, attached and suspended communities showed low composition turnover as reflected by dominant homogenizing dispersal, while they presented distinctive trends of interspecies interactions. This study sheds light on discrepant ecological processes governing community differentiation of attached biofilms and suspended biomass, which would provide ecological insights into the regulation of hybrid ecosystems.
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Affiliation(s)
- Shasha Yuan
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou 510275, China
| | - Sixian Guo
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou 510275, China
| | - Yongtao Tan
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou 510275, China
| | - Mengdi Li
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou 510275, China
| | - Yi Lu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou 510275, China
| | - Ronghua Xu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou 510275, China
| | - Ahmed Tawfik
- National Research Centre, Water Pollution Research Department, 12622, Dokki, Cairo, Egypt
| | - Zanmin Zhou
- Zhuhai Urban Drainage Co., Ltd., Zhuhai 519000, China
| | - Jincan Chen
- Zhuhai Urban Drainage Co., Ltd., Zhuhai 519000, China
| | - Wanli Liu
- Zhuhai Water Environment Holdings Group Ltd., Zhuhai 519000, China
| | - Fangang Meng
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou 510275, China.
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13
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Liu L, Wang N, Liu M, Guo Z, Shi S. Assembly processes underlying bacterial community differentiation among geographically close mangrove forests. MLIFE 2023; 2:73-88. [PMID: 38818341 PMCID: PMC10989747 DOI: 10.1002/mlf2.12060] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 02/01/2023] [Accepted: 02/14/2023] [Indexed: 06/01/2024]
Abstract
Bacterial communities play pivotal roles in nutrient cycling in mangrove forests. The assembly of mangrove microbial communities has been found to be influenced by complex factors, such as geographic distance, physicochemical conditions, and plant identity, but the relative importance of these factors and how these factors shape the assembling process remain elusive. We analyzed the bacterial communities sampled from three mangrove species (Aegiceras corniculatum, Bruguiera sexangula, and Kandelia obovata) at three locations along the estuarine Dongzhai Harbor in Hainan, China. We revealed larger differences in rhizosphere bacterial communities among geographical locations than among plant species, indicated by differences in diversity, composition, and interaction networks. We found that dispersal limitation and homogeneous selection have substantial contributions to the assembly of mangrove rhizosphere bacterial communities in all three locations. Following the phylogenetic-bin-based null model analysis (iCAMP) framework, we also found dispersal limitation and homogeneous selection showing dominance in some bins. The greater differences among geographic locations may be mainly attributed to the larger proportions of dispersal limitation even at such a short geographic distance. We also found that beta diversity was positively correlated with environmental distances, implying that the more similar environmental conditions (such as rich carbon and nitrogen contents) among plant species may have shaped similar bacterial communities. We concluded that the geographic distances, which are associated with dispersal limitation, played a key role in assembling mangrove rhizosphere bacterial communities, while physicochemical conditions and plant identity contributed less.
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Affiliation(s)
- Lu Liu
- State Key Laboratory of Biocontrol, Guangdong Key Lab of Plant Resources, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life SciencesSun Yat‐Sen UniversityGuangzhouChina
| | - Nan Wang
- State Key Laboratory of Biocontrol, Guangdong Key Lab of Plant Resources, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life SciencesSun Yat‐Sen UniversityGuangzhouChina
| | - Min Liu
- State Key Laboratory of Biocontrol, Guangdong Key Lab of Plant Resources, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life SciencesSun Yat‐Sen UniversityGuangzhouChina
| | - Zixiao Guo
- State Key Laboratory of Biocontrol, Guangdong Key Lab of Plant Resources, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life SciencesSun Yat‐Sen UniversityGuangzhouChina
| | - Suhua Shi
- State Key Laboratory of Biocontrol, Guangdong Key Lab of Plant Resources, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life SciencesSun Yat‐Sen UniversityGuangzhouChina
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14
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Zhang J, Ge Z, Ma Z, Huang D, Zhang J. Seasonal changes driving shifts of aquatic rhizosphere microbial community structure and the functional properties. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 322:116124. [PMID: 36063697 DOI: 10.1016/j.jenvman.2022.116124] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Revised: 08/22/2022] [Accepted: 08/25/2022] [Indexed: 06/15/2023]
Abstract
Ecological floating beds could enable roots to become suspended and this allowed submerged roots to harbour various types of microbes. But, there was a lack of systematic research on microbial community structure changes and the influencing mechanisms. In this study, the ecological floating beds were constructed using selected plants [Cyperus involucratus Rottboll (Cyp), Thalia dealbata Fraser (Tha) and Iris tectorum Maxim (Iri)] that was compared with a control group [static water (S)]. The results showed that the highest abundance and diversity of root microbial communities were found in autumn, with the dominant taxa being Proteobacteria, Actinobacteriota, Cyanobacteria, Chloroflexi, Firmicutes, Bacteroidota, and Acidobacteriota. The microbial communities of Tha and Cyp groups greatly overlapped, while the Iri and control groups exhibited distinctly diverse communities. The root microbial populations of the same plant also reflected a large change in different seasons. Conversely, photosynthetic autotrophs and specialized anaerobes were more inclined to thrive at higher temperatures and lower DO concentrations and then they gradually became the dominant species. Microbial co-occurrences of the Tha and control groups were complex and showed both cooperation and competition. In addition, TOC was an important environmental factor that shaped the microbial community structures and DO changed the microbial community by affecting the abundance of aerobic and anaerobic bacteria. Microorganisms showed potential for degradation and metabolism of non-food substances with low/no corresponding metabolic pathways.
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Affiliation(s)
- Jiawei Zhang
- Department of Environmental Science and Engineering, Fudan Unersity, Shanghai, 200433, PR China
| | - Zuhan Ge
- Department of Environmental Science and Engineering, Fudan Unersity, Shanghai, 200433, PR China
| | - Zihang Ma
- Department of Environmental Science and Engineering, Fudan Unersity, Shanghai, 200433, PR China
| | - Deying Huang
- Department of Chemistry, Fudan University, Shanghai, 200433, PR China
| | - Jibiao Zhang
- Department of Environmental Science and Engineering, Fudan Unersity, Shanghai, 200433, PR China.
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15
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Su J, Zhang Q, Peng H, Feng J, He J, Zhang Y, Lin B, Wu N, Xiang Y. Exploring the impact of intensity and duration of Cu (II) depression on aniline-degrading biosystem: Performance, sludge activity and microbial diversity. BIORESOURCE TECHNOLOGY 2022; 360:127548. [PMID: 35779746 DOI: 10.1016/j.biortech.2022.127548] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Revised: 06/23/2022] [Accepted: 06/26/2022] [Indexed: 06/15/2023]
Abstract
To evaluate the ecological risk of aniline wastewater biodegradation, the aniline wastewater (200 mg/L) was treated in this work under the stress of Cu (II) at 3, 6 and 10 mg/L, respectively. The slight fluctuation of aniline-degrading performance and the significant inhibition of nitrogen removal was caused by the Cu (II) stress at below 6 mg/L. Meanwhile, the tolerance of nitrifying performance to Cu (II) was higher than denitrifying. The collapse of biosystem was caused by the Cu (II) stress at 10 mg/L and the decontamination function was disabled within 8 days. The activity and stability of sludge declined under the increase of Cu (II) content. Microbial diversity results demonstrated that the genera with heavy-metal tolerance represented by Zoogloea and Azospira significantly dominated under the continuously Cu (II) stress. Whereas, the biosystem with these dominant genera did not achieve the comparable aniline and nitrogen removal performance as the control group.
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Affiliation(s)
- Junhao Su
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China
| | - Qian Zhang
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China; Hainan Research Institute of Wuhan University of Technology, Sanya 572025, PR China.
| | - Haojin Peng
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China
| | - Jiapeng Feng
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China
| | - Jing He
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China
| | - Yunjie Zhang
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China
| | - Bing Lin
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China
| | - Nanping Wu
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China
| | - Yutong Xiang
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China
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16
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Wang X, Wu H, Dai C, Wang X, Wang L, Xu J, Lu Z. Microbial interactions enhanced environmental fitness and expanded ecological niches under dibutyl phthalate and cadmium co-contamination. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 306:119362. [PMID: 35489538 DOI: 10.1016/j.envpol.2022.119362] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Revised: 04/14/2022] [Accepted: 04/23/2022] [Indexed: 06/14/2023]
Abstract
Co-contamination of organic pollutants and heavy metals is universal in the natural environment. Dibutyl phthalate (DBP), a typical plasticizer, frequently coexists with cadmium (Cd) in nature. However, little attention has been given to the impacts of co-contamination by DBP and Cd on microbial communities or the responses of microbes. To address this, a microcosm experiment was conducted by supplying the exogenous DBP-degrading bacterium Glutamicibacter nicotianae ZM05 to investigate the interplay among DBP-Cd co-contamination, the exogenous DBP-degrading bacterium G. nicotianae ZM05, and indigenous microorganisms. To adapt to co-contamination stress, microbial communities adjust their diversity, interactions, and functions. The stability of the microbial community decreased under co-contamination, as evidenced by lower diversity, simpler network, and fewer ecological niches. Microbial interactions were strengthened, as evidenced by enriched pathways related to microbial communications. Meanwhile, interactions between microorganisms enhanced the environmental fitness of the exogenous DBP-degrading bacterium ZM05. Based on co-occurrence network prediction and coculture experiments, metabolic interactions between the non-DBP-degrading bacterium Cupriavidus metallidurans ZM16 and ZM05 were proven. Strain ZM16 utilized protocatechuic acid, a DBP downstream metabolite, to relieve acid inhibition and adsorbed Cd to relieve toxic stress. These findings help to explain the responses of bacterial and fungal communities to DBP-Cd co-contamination and provide new insights for the construction of degrading consortia for bioremediation.
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Affiliation(s)
- Xuejun Wang
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Hao Wu
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Chuhan Dai
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Xiaoyu Wang
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Lvjing Wang
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Jianming Xu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Zhenmei Lu
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, China.
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17
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Su J, Zhang Q, Huang W, Song J, Peng H, Feng J, He J, Zhang Y, Wei H. Transfer of functional microorganism: Regulation of N-acyl-homoserine lactones on the microbial community in aniline-degrading sequencing batch biofilm reactor. BIORESOURCE TECHNOLOGY 2022; 351:127052. [PMID: 35337993 DOI: 10.1016/j.biortech.2022.127052] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Revised: 03/16/2022] [Accepted: 03/18/2022] [Indexed: 06/14/2023]
Abstract
Due to the inhibition of nitrification from aniline toxicity, exogenous N-acyl-homoserine lactones (AHLs) addition was attempted to enhance nitrogen removal in this work. Two sequencing batch biofilm reactors (SBBRs): S1 (the control) and S2 (C6-HSL and 3-oxo-C8-HSL dosing) were used to treat aniline wastewater. The NH4+-N and TN removal rates of S2 were 42.50% and 26.99% higher than S1 in the aerobic phase, respectively. It revealed the nitrogen removal performance of S2 much better than S1. High-throughput sequencing results indicated that many nitrifiers and denitrifiers of S2, such as Nitrosomonas and Thauera, transferred from sludge to biofilm significantly and built closer relationships each other. Overall, main nitrogen removal was contributed by biofilm rather than sludge with the regulation of AHLs. A mild and collaborative environment of biofilms for microorganisms enhanced nitrogen removal. The work provided a new idea for reconciling the contradiction between nitrification and denitrification in aniline wastewater treatment.
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Affiliation(s)
- Junhao Su
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China
| | - Qian Zhang
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China.
| | - Wansong Huang
- Hubei Jianke International Construction Ltd.co, Wuhan 430223, PR China
| | - Jianyang Song
- School of Civil Engineering, Nanyang Institute of Technology, Nanyang 473004, PR China
| | - Haojin Peng
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China
| | - Jiapeng Feng
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China
| | - Jing He
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China
| | - Yunjie Zhang
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China
| | - Hua Wei
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan 430070, PR China
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18
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Gao S, Li Z, Hou Y, Wang A, Liu Q, Huang C. Effects of different carbon sources on the efficiency of sulfur-oxidizing denitrifying microorganisms. ENVIRONMENTAL RESEARCH 2022; 204:111946. [PMID: 34453896 DOI: 10.1016/j.envres.2021.111946] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Revised: 08/06/2021] [Accepted: 08/20/2021] [Indexed: 06/13/2023]
Abstract
This study aims to compare the effects of different carbon sources on sulfur-oxidizing denitrifying microorganisms by using glucose, ethanol, and acetate as carbon sources. Under the same chemical oxygen demand Cr (CODCr), nitrate, and sulfide concentrations, the removal rate of nitrate and total organic carbon, and the yield of elemental sulfur in a static experiment and a continuous flow reactor with glucose as the carbon source were lower than those with ethanol and acetic acid as the carbon source. The core sulfur-oxidizing denitrifying bacteria that use glucose as the carbon source were Azoarcus, Geoalkalibacter, and Mangroviflexus; those that use ethanol as the carbon source were Arcobacter, Pseudomonas, and Thauera; those that use acetate as the carbon source were Pseudomonas and Azoarcus. The metabolic activity of microorganisms that use different carbon sources was explained by functional gene detection. The fluctuation of gltA, a functional gene indicating heterotrophic metabolism of microorganisms, was small in three reactors, but that of the sulfur oxidation gene, Sqr, in the reactor with acetic acid as the carbon source was larger. Our results suggest that acetate is a more suitable carbon source for denitrification-desulfurization systems.
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Affiliation(s)
- Shuang Gao
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Zhiling Li
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Yanan Hou
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China
| | - Aijie Wang
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Qian Liu
- Research Center for Eco-environmental Engineering, Dongguan University of Technology, Dongguan, 523808, China
| | - Cong Huang
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China.
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19
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Liu X, Sun R, Hu S, Zhong Y, Wu Y. Aromatic compounds releases aroused by sediment resuspension alter nitrate transformation rates and pathways during aerobic-anoxic transition. JOURNAL OF HAZARDOUS MATERIALS 2022; 424:127365. [PMID: 34879562 DOI: 10.1016/j.jhazmat.2021.127365] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Revised: 09/23/2021] [Accepted: 09/25/2021] [Indexed: 06/13/2023]
Abstract
Aromatic compounds (ACs) releases aroused by sediment resuspension would certainly change the concentrations of suspended sediment (SPS) and organic carbon, which may alter nitrate-N transformation during aerobic-anoxic transition. To prove this, three typical ACs (aniline, nitrobenzene, and methylbenzene) with different octanol-water partition coefficients (Kow) were selected to investigate the effects of ACs releases aroused by sediment resuspension on nitrate-N transformation during aerobic-anoxic transition. ACs releases aroused by sediment resuspension accelerated nitrate-N transformation and enhanced the potential for dissimilatory nitrate reduction to ammonium (DNRA), compared to that without sediment resuspension. With sediment resuspension, methylbenzene releases affected nitrate-N transformation rates and pathways more significantly than aniline and nitrobenzene releases. Microbial analysis indicated that sediment resuspension created complicated microbial co-occurrence networks and changed the associations among bacteria; dominant bacteria abundance varied with different ACs releases. Further analysis revealed that ACs distributed in SPS, which increased with logKow, indirectly affected nitrate-N transformation rates and pathways via altering dominant bacteria abundance and electron transport system activity (ETSA). Especially, ETSA, which was positively associated with ACs distributed in SPS, affected nitrate-N transformation most directly. Overall, ACs release fate played important roles in nitrate-N transformation, causing ammonia-N retention and alterations in nitrogen cycle during aerobic-anoxic transition.
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Affiliation(s)
- Xiaoyan Liu
- School of chemistry and chemical engineering, Northwestern Polytechnical University, Xi'an 710129, China
| | - Ran Sun
- School of chemistry and chemical engineering, Northwestern Polytechnical University, Xi'an 710129, China
| | - Sihai Hu
- School of chemistry and chemical engineering, Northwestern Polytechnical University, Xi'an 710129, China
| | - Yangquanwei Zhong
- School of chemistry and chemical engineering, Northwestern Polytechnical University, Xi'an 710129, China
| | - Yaoguo Wu
- School of chemistry and chemical engineering, Northwestern Polytechnical University, Xi'an 710129, China.
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20
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Gu M, Fang W, Li X, Yang W, Waigi MG, Kengara FO, Wu S, Han C, Zhang Y. Up-regulation of ribosomal and carbon metabolism proteins enhanced pyrene biodegradation in fulvic acid-induced biofilm system. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 294:118602. [PMID: 34856247 DOI: 10.1016/j.envpol.2021.118602] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 11/26/2021] [Accepted: 11/27/2021] [Indexed: 06/13/2023]
Abstract
The polycyclic aromatic hydrocarbons (PAHs) that enter the aqueous phase usually coexist with fulvic acid (FA). Therefore, we initiated this investigation to explore the influences of FA on bacterial biofilm formation and its potential to biodegrade pyrene (PYR), using electron microscopic techniques and isobaric tags for relative and absolute quantification (iTRAQ). Our results revealed that FA stimulated biofilm formation and enhanced the biodegradation of PYR. First, FA favored the three-dimensional proliferation of bacteria, with an OD590/OD600 value of up to 14.78, and the extracellular surfaces covered by a layer of biomaterials. Distinctive intracellular morphologies of texture and organization were accompanied by reduced inter-bacterial distances of less than 0.31 μm. The biofilms formed displayed interactions between FA and surficial proteins, as noted by band shifts for the C-O and CO groups. Strikingly, FA triggered the upregulation of 130 proteins that were either operational in biofilm formation or in metabolic adjustments; with the changes supported by the increasing intensity of free amino acids and the newly generated N-O bonds. The results above revealed that the enhanced biodegradation was related to the up-regulation of the proteins functioned for ribosomal and carbon metabolism, and the ultra-structural changes in FA-induced biofilm system.
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Affiliation(s)
- Minfen Gu
- Center for Analysis and Testing, School of Chemistry and Materials, Nanjing Normal University, Nanjing, 210023, China
| | - WenWen Fang
- Center for Analysis and Testing, School of Chemistry and Materials, Nanjing Normal University, Nanjing, 210023, China
| | - Xiaoning Li
- Center for Analysis and Testing, School of Chemistry and Materials, Nanjing Normal University, Nanjing, 210023, China
| | - Weiben Yang
- Center for Analysis and Testing, School of Chemistry and Materials, Nanjing Normal University, Nanjing, 210023, China
| | - Michael Gatheru Waigi
- Institute of Organic Contaminant Control and Soil Remediation, College of Resources and Environmental Sciences, Nanjing Agricultural University, China
| | - Fredrick Orori Kengara
- School of Pure and Applied Sciences, Bomet University College, P.O. Box 701, 20400, Bomett, Kenya
| | - Shixi Wu
- Center for Analysis and Testing, School of Chemistry and Materials, Nanjing Normal University, Nanjing, 210023, China
| | - Cheng Han
- Center for Analysis and Testing, School of Chemistry and Materials, Nanjing Normal University, Nanjing, 210023, China
| | - Yinping Zhang
- Center for Analysis and Testing, School of Chemistry and Materials, Nanjing Normal University, Nanjing, 210023, China.
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21
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Ma WJ, Cheng YF, Jin RC. Comprehensive evaluation of the long-term effect of Cu 2+ on denitrifying granular sludge and feasibility of in situ recovery by phosphate. JOURNAL OF HAZARDOUS MATERIALS 2022; 422:126901. [PMID: 34419849 DOI: 10.1016/j.jhazmat.2021.126901] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2021] [Revised: 07/18/2021] [Accepted: 08/11/2021] [Indexed: 06/13/2023]
Abstract
With increased industrial development, vast heavy metals are inevitably discharged into wastewater. Cu2+ is one of the most hazardous heavy metals in biotreatment. However, the potential effect of Cu2+ on denitrifying granular sludge is still unknown. This work assesses the response of denitrifying granular sludge to Cu2+ stress from multiple aspects. The denitrifying granular sludge could tolerate 5 mg L-1 Cu2+, while the nitrogen removal efficiency decreased to 48.5% under 10 mg L-1 Cu2+. Enzyme activity and carbohydrate metabolism were inhibited, and the denitrifying bacteria were washed out under Cu2+ stress. The resulting deteriorated state was reversed by phosphate. The nitrogen removal efficiency recovered to 99% after 10 days, and the enzyme activity also recovered to the original level. Membrane transport, transcription and cellular processes were promoted. Overall, the results of this work provide a feasible strategy to rapidly restore the metabolic activity of denitrifying granular sludge under Cu2+ stress.
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Affiliation(s)
- Wen-Jie Ma
- Laboratory of Water Pollution Remediation, School of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China
| | - Ya-Fei Cheng
- Laboratory of Water Pollution Remediation, School of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China
| | - Ren-Cun Jin
- Laboratory of Water Pollution Remediation, School of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China.
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22
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Deng Y, Kokou F, Eding EH, Verdegem MCJ. Impact of early-life rearing history on gut microbiome succession and performance of Nile tilapia. Anim Microbiome 2021; 3:81. [PMID: 34838149 PMCID: PMC8627003 DOI: 10.1186/s42523-021-00145-w] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Accepted: 11/15/2021] [Indexed: 12/16/2022] Open
Abstract
Background Fish gut microbial colonisation starts during larval stage and plays an important role in host’s growth and health. To what extent first colonisation could influence the gut microbiome succession and growth in later life remains unknown. In this study, Nile tilapia embryos were incubated in two different environments, a flow-through system (FTS) and a biofloc system (BFS); hatched larvae were subsequently cultured in the systems for 14 days of feeding (dof). Fish were then transferred to one common recirculating aquaculture system (RAS1, common garden, 15–62 dof), followed by a growth trial in another RAS (RAS2, growth trial, 63–105 dof). In RAS2, fish were fed with two types of diet, differing in non-starch polysaccharide content. Our aim was to test the effect of rearing environment on the gut microbiome development, nutrient digestibility and growth performance of Nile tilapia during post-larvae stages. Results Larvae cultured in the BFS showed better growth and different gut microbiome, compared to FTS. After the common garden, the gut microbiome still showed differences in species composition, while body weight was similar. Long-term effects of early life rearing history on fish gut microbiome composition, nutrient digestibility, nitrogen and energy balances were not observed. Still, BFS-reared fish had more gut microbial interactions than FTS-reared fish. A temporal effect was observed in gut microbiome succession during fish development, although a distinct number of core microbiome remained present throughout the experimental period. Conclusion Our results indicated that the legacy effect of first microbial colonisation of the fish gut gradually disappeared during host development, with no differences in gut microbiome composition and growth performance observed in later life after culture in a common environment. However, early life exposure of larvae to biofloc consistently increased the microbial interactions in the gut of juvenile Nile tilapia and might possibly benefit gut health. Supplementary Information The online version contains supplementary material available at 10.1186/s42523-021-00145-w.
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Affiliation(s)
- Yale Deng
- Aquaculture and Fisheries Group, Wageningen University and Research, Wageningen, The Netherlands
| | - Fotini Kokou
- Aquaculture and Fisheries Group, Wageningen University and Research, Wageningen, The Netherlands.
| | - Ep H Eding
- Aquaculture and Fisheries Group, Wageningen University and Research, Wageningen, The Netherlands
| | - Marc C J Verdegem
- Aquaculture and Fisheries Group, Wageningen University and Research, Wageningen, The Netherlands
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Ma H, Gao X, Chen Y, Zhu J, Liu T. Fe(II) enhances simultaneous phosphorus removal and denitrification in heterotrophic denitrification by chemical precipitation and stimulating denitrifiers activity. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 287:117668. [PMID: 34426390 DOI: 10.1016/j.envpol.2021.117668] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 06/15/2021] [Accepted: 06/24/2021] [Indexed: 06/13/2023]
Abstract
Using Fe(II) salt as the precipitant in heterotrophic denitrification achieves improved TP removal, and enhancement in denitrification was often observed. This study aimed to obtain a better understanding of Fe(II)-enhanced denitrification with sufficient carbon source supply. Laboratory-scale experiments were conducted in SBRs with or without Fe(II) addition. Remarkably improved TP removal was experienced. TP removal efficiency in Fe(II) adding reactor was 85.8 ± 3.4%; whereas, that in the reactor without Fe(II) addition was 31.1 ± 2.8%. Besides improved TP removal, better TN removal efficiency (94.1 ± 1.1%) were recorded when Fe(II) was added, and that in the reactor without Fe(II) addition was 89 ± 0.8%. The specific denitrification rate were observed increase by 12.6% when Fe(II) was added. Further microbial analyses revealed increases in the abundances of typical denitrifiers (i.e. Niastella, Opitutus, Dechloromonas, Ignavibacterium, Anaeromyxobacter, Pedosphaera, and Myxococcus). Their associated denitrifying genes, narG, nirS, norB, and nosZ, were observed had 14.2%, 19.4%, 21.6%, and 9.9% elevation, respectively. Such enhancement in denitrification shall not be due to nitrate-dependent ferrous oxidation, which prevails in organic-deficient environments. In an environment with a continuous supply of Fe(II) and plenty of carbon sources, a cycle of denitrifying enzyme activity enhancement in the presence of Fe(II) facilitating nitrogen substrate utilization, stimulating denitrifier metabolism and growth, elevating denitrifying genes abundance, and increasing denitrifying enzymes expression were thought to be responsible for the Fe(II)-enhanced heterotrophic denitrification. Fe(II) salt is often a less expensive precipitant and has recently become attractive for TP removal in wastewater. The findings of this study solidify previous observation of enhancement of both TP and TN removal by adding Fe(II) in denitrification, and would be helpful for developing cost-effective pollutant removal processes.
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Affiliation(s)
- Hang Ma
- Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, PR China
| | - Xinlei Gao
- Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, PR China; Guangdong Water Co., Ltd, Shenzhen, 518021, China
| | - Yihua Chen
- Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, PR China
| | - Jiaxin Zhu
- Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, PR China
| | - Tongzhou Liu
- Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, PR China.
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24
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Zeng L, Dai Y, Zhang X, Man Y, Tai Y, Yang Y, Tao R. Keystone Species and Niche Differentiation Promote Microbial N, P, and COD Removal in Pilot Scale Constructed Wetlands Treating Domestic Sewage. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021; 55:12652-12663. [PMID: 34478283 DOI: 10.1021/acs.est.1c03880] [Citation(s) in RCA: 38] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
The microbial characteristics related to nitrogen (N), phosphorus (P), and chemical oxygen demand (COD) removal were investigated in three pilot scale constructed wetlands (CWs). Compared to horizontal subsurface flow (HSSF) and surface flow (SF) CWs, the aerobic vertical flow (VF) CW enriched more functional bacteria carrying genes for nitrification (nxrA, amoA), denitrification (nosZ), dephosphorization (phoD), and methane oxidation (mmoX), while the removal of COD, total P, and total N increased by 33.28%, 255.28%, and 299.06%, respectively. The co-occurrence network of functional bacteria in the HSSF CW was complex, with equivalent bacterial cooperation and competition. Both the VF and SF CWs exhibited a simple functional topological structure. The VF CW reduced functional redundancy by forming niche differentiation, which filtered out keystone species that were closely related to each other, thus achieving effective sewage purification. Alternatively, bacterial niche overlap protected a single function in the SF CW. Compared with the construction type, temperature, and plants had less effect on nutrient removal in the CWs from this subtropical region. Partial least-squares path modeling (PLS-PM) suggests that high dissolved oxygen and oxidation-reduction potential promoted a diverse bacterial community and that the nonkeystone bacteria reduced external stress for functional bacteria, thereby indirectly promoting nutrient removal.
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Affiliation(s)
- Luping Zeng
- Research Center of Hydrobiology, Department of Ecology, Jinan University, Guangzhou 510632, China
- Engineering Research Center of Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Guangzhou 510632, China
| | - Yunv Dai
- Research Center of Hydrobiology, Department of Ecology, Jinan University, Guangzhou 510632, China
- Engineering Research Center of Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Guangzhou 510632, China
| | - Xiaomeng Zhang
- Research Center of Hydrobiology, Department of Ecology, Jinan University, Guangzhou 510632, China
- Engineering Research Center of Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Guangzhou 510632, China
| | - Ying Man
- Research Center of Hydrobiology, Department of Ecology, Jinan University, Guangzhou 510632, China
- Engineering Research Center of Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Guangzhou 510632, China
| | - Yiping Tai
- Research Center of Hydrobiology, Department of Ecology, Jinan University, Guangzhou 510632, China
- Engineering Research Center of Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Guangzhou 510632, China
| | - Yang Yang
- Research Center of Hydrobiology, Department of Ecology, Jinan University, Guangzhou 510632, China
- Engineering Research Center of Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Guangzhou 510632, China
| | - Ran Tao
- Research Center of Hydrobiology, Department of Ecology, Jinan University, Guangzhou 510632, China
- Engineering Research Center of Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Guangzhou 510632, China
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25
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Light exposure mediates circadian rhythms of rhizosphere microbial communities. THE ISME JOURNAL 2021; 15:2655-2664. [PMID: 33746202 PMCID: PMC8397761 DOI: 10.1038/s41396-021-00957-3] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Revised: 02/26/2021] [Accepted: 03/03/2021] [Indexed: 02/01/2023]
Abstract
Microbial community circadian rhythms have a broad influence on host health and even though light-induced environmental fluctuations could regulate microbial communities, the contribution of light to the circadian rhythms of rhizosphere microbial communities has received little attention. To address this gap, we monitored diel changes in the microbial communities in rice (Oryza sativa L.) rhizosphere soil under light-dark and constant dark regimes, identifying microbes with circadian rhythms caused by light exposure and microbial circadian clocks, respectively. While rhizosphere microbial communities displayed circadian rhythms under light-dark and constant dark regimes, taxa possessing circadian rhythms under the two conditions were dissimilar. Light exposure concealed microbial circadian clocks as a regulatory driver, leading to fewer ecological niches in light versus dark communities. These findings disentangle regulation mechanisms for circadian rhythms in the rice rhizosphere microbial communities and highlight the role of light-induced regulation of rhizosphere microbial communities.
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26
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Wang H, Chen N, Feng C, Deng Y. Insights into heterotrophic denitrification diversity in wastewater treatment systems: Progress and future prospects based on different carbon sources. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 780:146521. [PMID: 34030330 DOI: 10.1016/j.scitotenv.2021.146521] [Citation(s) in RCA: 60] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Revised: 03/03/2021] [Accepted: 03/11/2021] [Indexed: 06/12/2023]
Abstract
Nitrate, as the most stable form of nitrogen pollution, widely exists in aquatic environment, which has great potential threat to ecological environment and human health. Heterotrophic denitrification, as the most economical and effective method to treat nitrate wastewater, has been widely and deeply studied. From the perspective of heterotrophic denitrification, this review discusses nitrate removal in the aquatic environment, and the behaviors of different carbon source types were classified and summarized to explain the cyclical evolution of carbon and nitrogen in global biochemical processes. In addition, the denitrification process, electron transfer as well as denitrifying and hydrolyzing microorganisms among different carbon sources were analyzed and compared, and the commonness and characteristics of the denitrification process with various carbon sources were revealed. This study provides theoretical support and technical guidance for further improvement of denitrification technologies.
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Affiliation(s)
- Haishuang Wang
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, China
| | - Nan Chen
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, China.
| | - Chuanping Feng
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, China
| | - Yang Deng
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, China
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27
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Yang S, Peng Y, Zhang S, Han X, Li J, Zhang L. Carrier type induces anammox biofilm structure and the nitrogen removal pathway: Demonstration in a full-scale partial nitritation/anammox process. BIORESOURCE TECHNOLOGY 2021; 334:125249. [PMID: 33975142 DOI: 10.1016/j.biortech.2021.125249] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Revised: 04/27/2021] [Accepted: 04/29/2021] [Indexed: 06/12/2023]
Abstract
In this study, two typical carrier types, microporous and macroporous carriers, were collected from a full-scale partial nitritation/anammox reactor for analysis and comparison of the biofilm structure characteristics, performance and removal nitrogen pathway. For microporous carriers, a thicker biofilm (>5 mm) was obtained with higher biomass and abundance of anammox bacteria as well as a higher nitrogen removal efficiency due to the integration of denitrifying and anammox bacteria. In addition, higher microbial community stability can be expected under varying environmental conditions. In comparison, macroporous carrier biofilm exhibited a lower thickness (0.4-2.3 mm) and lower microbial richness, with a strong network correlation among genera. Analysis showed that the mainly positive correlation between anammox bacteria and ammonium oxidizing bacteria, enhancing coupling partial nitritation and anammox. These findings help further our understanding of the mechanisms of anammox biofilm nitrogen removal and provide a baseline for optimization of the design of carrier structures.
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Affiliation(s)
- Shenhua Yang
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Engineering Research Center of Beijing, Beijing University of Technology, Beijing 100124, PR China
| | - Yongzhen Peng
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Engineering Research Center of Beijing, Beijing University of Technology, Beijing 100124, PR China
| | - Shujun Zhang
- Beijing Drainage Group Co. Ltd (BDG), Beijing 100022, China
| | - Xiaoyu Han
- Beijing Drainage Group Co. Ltd (BDG), Beijing 100022, China
| | - Jialin Li
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Engineering Research Center of Beijing, Beijing University of Technology, Beijing 100124, PR China
| | - Liang Zhang
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Engineering Research Center of Beijing, Beijing University of Technology, Beijing 100124, PR China.
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28
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Luo J, Guo X, Liang J, Song Y, Liu Y, Li J, Du Y, Mu Q, Jiang Y, Zhao H, Li T. The influence of elevated CO 2 on bacterial community structure and its co-occurrence network in soils polluted with Cr 2O 3 nanoparticles. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 779:146430. [PMID: 33752002 DOI: 10.1016/j.scitotenv.2021.146430] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Revised: 02/10/2021] [Accepted: 03/08/2021] [Indexed: 06/12/2023]
Abstract
Elevated CO2 (eCO2) and nanoparticles release are considered among the most noteworthy global concerns as they may impose negative effects on human health and ecosystem functioning. A mechanistic understanding of their combined impacts on soil microbiota is essential due to the profound eCO2 effect on soil biogeochemical processes. In this study, the impacts of Cr2O3 nanoparticles (nano-Cr2O3) on the activity, structure and co-occurrence networks of bacterial communities under ambient and eCO2 were compared between a clay loam and a sandy loam soil. We showed that eCO2 substantially mitigated nano-Cr2O3 toxicity, with microbial biomass, enzyme activity and bacterial alpha-diversity in clay loam soil were much higher than those in sandy loam soil. Nano-Cr2O3 addition caused an increase in alpha-diversity except for clay loam soil samples under eCO2. 16S rRNA gene profiling data found eCO2 remarkably reduced community divergences induced by nano-Cr2O3 more efficiently in clay loam soil (P < 0.05). Network analyses revealed more complex co-occurrence network architectures in clay loam soil than in sandy loam soil, however, nano-Cr2O3 decreased but eCO2 increased modularity and network complexity. Rising CO2 favoured the growth of oligotrophic (Acidobacteriaceae, Bryobacteraceae) rather than the copiotrophic bacteria (Sphingomonadaceae, Caulobacteraceae, Bacteroidaceae), which may contribute to community recovery and increase available carbon utilization efficiency. Our results suggested that the degree to which eCO2 mitigates nano-Cr2O3 toxicity is soil dependent, which could be related to the variation in clay and organic matter content, resilience of the resistant bacterial taxa, and microbial network complexity in distinct soils.
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Affiliation(s)
- Jipeng Luo
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Xinyu Guo
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Jiabin Liang
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yuchao Song
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yuankun Liu
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Jinxing Li
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yilin Du
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Qili Mu
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yue Jiang
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Heping Zhao
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Tingqiang Li
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou 310058, China; National Demonstration Center for Experimental Environment and Resources Education, Zhejiang University, Hangzhou 310058, China.
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29
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Deng Y, Ruan Y, Taherzadeh MJ, Chen J, Qi W, Kong D, Ma B, Xu X, Lu H. Carbon availability shifts the nitrogen removal pathway and microbial community in biofilm airlift reactor. BIORESOURCE TECHNOLOGY 2021; 323:124568. [PMID: 33360950 DOI: 10.1016/j.biortech.2020.124568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Revised: 12/14/2020] [Accepted: 12/15/2020] [Indexed: 06/12/2023]
Abstract
This study investigated the response of nitrogen removal performance and microbial community to different carbon composites in biofilm airlift reactors for wastewater treatment. Three reactors were filled with poly (butylene succinate) and bamboo powder composite at the blending ratio of 9:1, 1:1 and 1:9. Increasing the component of bamboo powder in the carrier reduced the carbon availability and had an adverse effect on nitrate removal efficiency. However, bamboo powder improved the ammonia removal rate which mainly through autotrophic nitrification. Three reactors exhibited distinct microbial compositions in both bacterial and fungal diversity. High inclusion of bamboo power decreased the relative abundance of denitrifiers Denitromonas and increased the relative abundance of nitrifiers, including Nitromonas, Nitrospina and Nitrospira. Moreover, correlation network revealed a competitive interaction between the taxa responsible for ammonia removal and nitrate removal processes. Those results indicated the feasibility of steering nitrogen removal pathway through carrier formulation in wastewater treatment.
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Affiliation(s)
- Yale Deng
- Institute of Agricultural Bio-Environmental Engineering, College of Bio-systems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China; Aquaculture and Fisheries Group, Department of Animal Sciences, Wageningen University, WD Wageningen 6708, The Netherlands
| | - Yunjie Ruan
- Institute of Agricultural Bio-Environmental Engineering, College of Bio-systems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China; The Rural Development Academy, Zhejiang University, Hangzhou 310058, China.
| | | | - Jishuang Chen
- Institute of Bioresource Engineering, Nanjing Technology University, Nanjing 210009, China
| | - Wanhe Qi
- Institute of Agricultural Bio-Environmental Engineering, College of Bio-systems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China
| | - Dedong Kong
- Agricultural Experiment Station, Zhejiang University, Hangzhou 310058, China
| | - Bin Ma
- Department of Environmental Engineering, Zhejiang University, Hangzhou 310058, China
| | - Xiangyang Xu
- Department of Environmental Engineering, Zhejiang University, Hangzhou 310058, China
| | - Huifeng Lu
- Department of Environmental Engineering, Zhejiang University, Hangzhou 310058, China
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30
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Yu H, Ye X, Feng L, Yang J, Lan Z, Ren C, Zhu W, Yang G, Zhou J. Dynamics of denitrification performance and denitrifying community under high-dose acute oxytetracycline exposure and various biorecovery strategies in polycaprolactone-supported solid-phase denitrification. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 279:111763. [PMID: 33310237 DOI: 10.1016/j.jenvman.2020.111763] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Revised: 11/08/2020] [Accepted: 11/26/2020] [Indexed: 06/12/2023]
Abstract
Solid-phase denitrification (SPD) is a promising technology for nitrate-rich water purification. This study aimed to examine the variation in denitrification performance and denitrifying community under high-dose acute oxytetracycline (OTC) exposure and various biorecovery strategies. The denitrification performance was impaired significantly after one-day OTC shock at 50 mg L-1 in a continuous-flow SPD system supported by a polycaprolactone (PCL) carrier but could rapidly recover without the addition of OTC. When 50 mg L-1 OTC stress was applied for a longer time in the batch tests, a natural recovery period of more than 20 days was required to reach more than 95% nitrate reduction. Under the same conditions, the addition of both mature biofilm-attached PCL carrier and fresh biofilm-free PCL carrier significantly shortened the recovery time for efficient nitrate reduction, mainly due to the increase in organic availability from the PCL carriers. However, the composition of the microbial community notably changed due to the effects of OTC according to high-throughput sequencing and metagenomic analysis. Genes encoding NAR and NIR were much more sensitive than those encoding NOR and NOS to OTC shock. Tetracycline resistance gene (TRG) enrichment was 15.86% higher in the biofilm that experienced short-term OTC shock than in the control biofilm in the continuous-flow SPD system.
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Affiliation(s)
- Hui Yu
- Department of Environmental Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China
| | - Xin Ye
- Department of Environmental Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China
| | - Lijuan Feng
- Department of Environmental Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China.
| | - Jingyi Yang
- Department of Environmental Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China
| | - Zeyu Lan
- Department of Environmental Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China
| | - Chengzhe Ren
- Department of Environmental Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China
| | - Wenzhuo Zhu
- Department of Environmental Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China
| | - Guangfeng Yang
- Department of Environmental Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China
| | - Jiaheng Zhou
- College of Civil Engineering and Architecture, Zhejiang University of Technology, Hangzhou, 310014, PR China
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31
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Yuan H, Huang S, Yuan J, You Y, Zhang Y. Characteristics of microbial denitrification under different aeration intensities: Performance, mechanism, and co-occurrence network. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 754:141965. [PMID: 32911146 DOI: 10.1016/j.scitotenv.2020.141965] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Revised: 08/09/2020] [Accepted: 08/23/2020] [Indexed: 06/11/2023]
Abstract
This study aimed to explore how dissolved oxygen (DO) affected the characteristics and mechanisms of denitrification in mixed bacterial consortia. We analyzed denitrification efficiency, intracellular nicotinamide adenine dinucleotide (NADH), relative expression of functional genes, and potential co-occurrence network of microorganisms. Results showed that the total nitrogen (TN) removal rates at different aeration intensities (0.00, 0.25, 0.63, and 1.25 L/(L·min)) were 0.93, 1.45, 0.86, and 0.53 mg/(L·min), respectively, which were higher than previously reported values for pure culture. The optimal aeration intensity was 0.25 L/(L·min), at which the maximum NADH accumulation rate and highest relative abundance of napA, nirK, and nosZ were achieved. With increased aeration intensity, the amount of electron flux to nitrate decreased and nitrate assimilation increased. On one hand, nitrate reduction was primarily inhibited by oxygen through competition for electron donors of a certain single strain. On the other hand, oxygen was consumed rapidly by bacteria by stimulating carbon metabolism to create an optimal denitrification niche for denitrifying microorganisms. Denitrification was performed via inter-genus cooperation (competitive interactions and symbiotic relationships) between keystone taxa (Azoarcus, Paracoccus, Thauera, Stappia, and Pseudomonas) and other heterotrophic bacteria (OHB) in aeration reactors. However, in the non-aeration case, which was primarily carried out based on intra-genus syntrophy within genus Propionivibrio, the co-occurrence network constructed the optimal niche contributing to the high TN removal efficiency. Overall, this study enhanced our knowledge about the molecular ecological mechanisms of aerobic denitrification in mixed bacterial consortia and has theoretical guiding significance for further practical application.
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Affiliation(s)
- Haiguang Yuan
- School of Environment and Energy, South China University of Technology, Higher Education Mega Center, Guangzhou 510006, PR China; Guangdong Ecological Environment Control Engineering Technology Research Center, South China University of Technology, Higher Education Mega Center, Guangzhou 510006, PR China
| | - Shaobin Huang
- School of Environment and Energy, South China University of Technology, Higher Education Mega Center, Guangzhou 510006, PR China; Guangdong Ecological Environment Control Engineering Technology Research Center, South China University of Technology, Higher Education Mega Center, Guangzhou 510006, PR China; State Key Laboratory of Pulp and Paper Engineering, Plant Micro/Nano Fiber Research Center, South China University of Technology, Guangzhou 510640, PR China.
| | - Jianqi Yuan
- School of Environment and Energy, South China University of Technology, Higher Education Mega Center, Guangzhou 510006, PR China; Guangdong Ecological Environment Control Engineering Technology Research Center, South China University of Technology, Higher Education Mega Center, Guangzhou 510006, PR China
| | - Yingying You
- School of Environment and Energy, South China University of Technology, Higher Education Mega Center, Guangzhou 510006, PR China; Guangdong Ecological Environment Control Engineering Technology Research Center, South China University of Technology, Higher Education Mega Center, Guangzhou 510006, PR China
| | - Yongqing Zhang
- School of Environment and Energy, South China University of Technology, Higher Education Mega Center, Guangzhou 510006, PR China
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Qian F, Huang Z, Liu Y, Grace OOW, Wang J, Shi G. Conversion of full nitritation to partial nitritation/anammox in a continuous granular reactor for low-strength ammonium wastewater treatment at 20 °C. Biodegradation 2021; 32:87-98. [PMID: 33449262 DOI: 10.1007/s10532-020-09923-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Accepted: 12/14/2020] [Indexed: 01/21/2023]
Abstract
The feasibility of converting full nitritation to partial nitritation/anammox (PN/A) at ambient temperature (20 °C) was investigated in a continuous granular reactor. The process was conducted without anammox bacteria inoculation for the treatment of 70 mg L-1 of low-strength ammonium nitrogen wastewater. Following the stepwise increase of the nitrogen loading rate from 0.84 to 1.30 kg N m-3 d-1 in 320 days of operation, the removal efficiency of total inorganic nitrogen (TIN) exceeded 80% under oxygen-limiting conditions. The mature PN/A granules, which had a compact structure and abundant biomass, exhibited a specific TIN removal rate of 0.11 g N g-1 VSS d-1 and a settling velocity of 70.2 m h-1. This was comparable with that obtained at above 30 °C in previous reports. High-throughput pyrosequencing results revealed that the co-enrichment of aerobic and anaerobic ammonium-oxidizing bacteria identified as genera Nitrosomonas and Candidatus Kuenenia, which prompted a hybrid competition for oxygen and nitrite with nitrite-oxidizing bacteria (NOB). However, the overgrowth of novel NOB Candidatus Nitrotoga adapted to low temperatures and low nitrite concentration could potentially deteriorate the one-stage PN/A process by exhausting residual bulk ammonium under long-term excessive aeration.
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Affiliation(s)
- Feiyue Qian
- College of Environmental Science and Engineering, Suzhou University of Science and Technology, No. 1 Kerui Road, Suzhou, 215009, People's Republic of China. .,National and Local Joint Engineering Laboratory of Municipal Sewage Resource Utilization Technology, Suzhou, 215009, People's Republic of China.
| | - Ziheng Huang
- College of Environmental Science and Engineering, Suzhou University of Science and Technology, No. 1 Kerui Road, Suzhou, 215009, People's Republic of China
| | - Yuxin Liu
- College of Environmental Science and Engineering, Suzhou University of Science and Technology, No. 1 Kerui Road, Suzhou, 215009, People's Republic of China
| | - Olatidoye Omo Wumi Grace
- College of Environmental Science and Engineering, Suzhou University of Science and Technology, No. 1 Kerui Road, Suzhou, 215009, People's Republic of China
| | - Jianfang Wang
- College of Environmental Science and Engineering, Suzhou University of Science and Technology, No. 1 Kerui Road, Suzhou, 215009, People's Republic of China.,National and Local Joint Engineering Laboratory of Municipal Sewage Resource Utilization Technology, Suzhou, 215009, People's Republic of China
| | - Guangyu Shi
- College of Environmental Science and Engineering, Suzhou University of Science and Technology, No. 1 Kerui Road, Suzhou, 215009, People's Republic of China.,National and Local Joint Engineering Laboratory of Municipal Sewage Resource Utilization Technology, Suzhou, 215009, People's Republic of China
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Ross BN, Whiteley M. Ignoring social distancing: advances in understanding multi-species bacterial interactions. Fac Rev 2020; 9:23. [PMID: 33659955 PMCID: PMC7886066 DOI: 10.12703/r/9-23] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Almost every ecosystem on this planet is teeming with microbial communities made of diverse bacterial species. At a reductionist view, many of these bacteria form pairwise interactions, but, as the field of view expands, the neighboring organisms and the abiotic environment can play a crucial role in shaping the interactions between species. Over the years, a strong foundation of knowledge has been built on isolated pairwise interactions between bacteria, but now the field is advancing toward understanding how cohabitating bacteria and natural surroundings affect these interactions. Use of bottom-up approaches, piecing communities together, and top-down approaches that deconstruct communities are providing insight on how different species interact. In this review, we highlight how studies are incorporating more complex communities, mimicking the natural environment, and recurring findings such as the importance of cooperation for stability in harsh environments and the impact of bacteria-induced environmental pH shifts. Additionally, we will discuss how omics are being used as a top-down approach to identify previously unknown interspecies bacterial interactions and the challenges of these types of studies for microbial ecology.
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Affiliation(s)
- Brittany N Ross
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA
- Emory-Children's Cystic Fibrosis Center, Atlanta, Georgia, USA
- Center for Microbial Dynamics and Infection, Georgia Institute of Technology, Atlanta, Georgia, USA
| | - Marvin Whiteley
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA
- Emory-Children's Cystic Fibrosis Center, Atlanta, Georgia, USA
- Center for Microbial Dynamics and Infection, Georgia Institute of Technology, Atlanta, Georgia, USA
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Kumar Awasthi M, Ravindran B, Sarsaiya S, Chen H, Wainaina S, Singh E, Liu T, Kumar S, Pandey A, Singh L, Zhang Z. Metagenomics for taxonomy profiling: tools and approaches. Bioengineered 2020; 11:356-374. [PMID: 32149573 PMCID: PMC7161568 DOI: 10.1080/21655979.2020.1736238] [Citation(s) in RCA: 78] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2019] [Revised: 02/20/2020] [Accepted: 02/21/2020] [Indexed: 12/25/2022] Open
Abstract
The study of metagenomics is an emerging field that identifies the total genetic materials in an organism along with the set of all genetic materials like deoxyribonucleic acid and ribose nucleic acid, which play a key role with the maintenance of cellular functions. The best part of this technology is that it gives more flexibility to environmental microbiologists to instantly pioneer the immense genetic variability of microbial communities. However, it is intensively complex to identify the suitable sequencing measures of any specific gene that can exclusively indicate the involvement of microbial metagenomes and be able to advance valuable results about these communities. This review provides an overview of the metagenomic advancement that has been advantageous for aggregation of more knowledge about specific genes, microbial communities and its metabolic pathways. More specific drawbacks of metagenomes technology mainly depend on sequence-based analysis. Therefore, this 'targeted based metagenomics' approach will give comprehensive knowledge about the ecological, evolutionary and functional sequence of significantly important genes that naturally exist in living beings either human, animal and microorganisms from distinctive ecosystems.
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Affiliation(s)
- Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province, China
- Swedish Centre for Resource Recovery, University of Borås, Borås, Sweden
| | - B. Ravindran
- Department of Environmental Energy and Engineering, Kyonggi University Youngtong-Gu, Suwon, South Korea
| | - Surendra Sarsaiya
- Key Laboratory of Basic Pharmacology of Ministry of Education, Zunyi Medical University, Zunyi, Guizhou, China
| | - Hongyu Chen
- Institute of Biology, Freie Universität Berlin Altensteinstr, Berlin, Germany
| | - Steven Wainaina
- Swedish Centre for Resource Recovery, University of Borås, Borås, Sweden
| | - Ekta Singh
- CSIR-National Environmental Engineering Research Institute, Nagpur, India
| | - Tao Liu
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province, China
| | - Sunil Kumar
- CSIR-National Environmental Engineering Research Institute, Nagpur, India
| | - Ashok Pandey
- Centre for Innovation and Translational Research CSIR-Indian Institute of Toxicology Research, Lucknow, India
| | - Lal Singh
- CSIR-National Environmental Engineering Research Institute, Nagpur, India
| | - Zengqiang Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province, China
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Li BB, Zhi LL, Peng ZY, Ma XX, Li J. Contrasting distribution of antibiotic resistance genes and microbial communities in suspended activated sludge versus attached biofilms in an integrated fixed film activated sludge (IFAS) system. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 742:140481. [PMID: 32629253 DOI: 10.1016/j.scitotenv.2020.140481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 06/22/2020] [Accepted: 06/22/2020] [Indexed: 06/11/2023]
Abstract
Suspended activated sludge (AS) and carrier-attached biofilms simultaneously exist in an integrated fixed film activated sludge (IFAS) system. However, the differentiation of antibiotic resistance genes (ARGs) and microbial communities in different types of biofilms is rarely reported. In this study, successions of ARGs and microbial communities of AS and two types of suspended carrier-attached biofilms over seasons were investigated in the IFAS system of one municipal wastewater treatment plant. Results showed that substantial differences were found in the distribution pattern of ARGs, bacterial communities, and predicted microbial function between AS and attached biofilms. The relative abundances of all detected ARGs in AS were significantly higher than those in attached biofilms. ARGs with higher relative abundances generally existed in K3 carrier (surface area ≥ 800 m2/m3) attached biofilms than those in K1 carrier (surface area ≥ 450 m2/m3) biofilms. The relative abundances of ARGs were negatively correlated with temperature and biochemical oxygen demand (BOD5) and positively correlated with ammonium nitrogen contents for AS but not for attached biofilms. No significant relationship was found between the extracellular polymeric substance (EPS) content and ARG abundance for all samples. Temperature, BOD5, and ammonium nitrogen contents were closely connected to microbial communities. The Bray-Curtis distance of bacterial communities between two adjacent sampling seasons for AS was larger than those of two attached biofilms. Network analysis indicated that the AS network had more positive links and intense connections than the attached biofilm networks, potentially facilitating the dissemination of ARGs. The differential distribution of ARGs among the three types of samples was significantly correlated with the microbial co-occurrence network topological properties. Bray-Curtis distance and network analysis suggest that microbial community is more robust in attached biofilms than in suspended AS. This work provides a more in-depth understanding of ARGs and microbial community distributions in wastewater biofilms.
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Affiliation(s)
- Bing-Bing Li
- Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, Wuxi 214122, China
| | - Li-Ling Zhi
- Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, Wuxi 214122, China
| | - Zhi-Ying Peng
- Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, Wuxi 214122, China
| | - Xin-Xin Ma
- Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, Wuxi 214122, China
| | - Ji Li
- Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, Wuxi 214122, China; Jiangsu Engineering Laboratory for Biomass Energy and Carbon Reduction Technology, School of Environment and Civil Engineering, Jiangnan University, Wuxi 214122, China; Jiangsu College of Water Treatment Technology and Material Collaborative Innovation Center, Suzhou 215009, China.
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36
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Ruan Y, Kumar Awasthi M, Cai L, Lu H, Xu X, Li W. Simultaneous aerobic denitrification and antibiotics degradation by strain Marinobacter hydrocarbonoclasticus RAD-2. BIORESOURCE TECHNOLOGY 2020; 313:123609. [PMID: 32506034 DOI: 10.1016/j.biortech.2020.123609] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Revised: 05/29/2020] [Accepted: 05/30/2020] [Indexed: 06/11/2023]
Abstract
Simultaneous denitrification and antibiotics (oxytetracycline, OTC and ciprofloxacin, CFX) degradation was evaluated using a typical aerobic denitrifying strain Marinobacter hydrocarbonoclasticus RAD-2. There was no significant influence on the aerobic nitrate removal efficiency of strain RAD-2 in the presence of these two antibiotics. Along with denitrification, the average degradation rate of 2.92 μg OTC L-1h-1 was achieved, while no degradation was observed for CFX. The growth behavior indicated that an insignificant inhibition effect could have occurred at an antibiotics dosage lower than 300 μg/L. The transcriptional results revealed that antibiotics exposure caused (<2h) down-regulation of the denitrifying related genes, but triggered a significant subsequent up-regulation (4 h). Less nitrous oxide productions were observed in both aerobic and anoxic denitrification processes with antibiotics. Overall, the hormesis effect caused by antibiotics exposure indicated a potential approach to enhance the co-metabolism degradation performance for nitrate and antibiotics in aerobic denitrification.
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Affiliation(s)
- Yunjie Ruan
- Institute of Agricultural Bio-Environmental Engineering, College of Bio-systems, Engineering and Food Science, Zhejiang University, Hangzhou 310058, China; Academy of Rural Development, Zhejiang University, Hangzhou 310058, China
| | - Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China; Swedish Centre for Resource Recovery, University of Borås, 50190 Borås, Sweden
| | - Lei Cai
- Laboratory of Microbial Resources, College of Food Science and Biotechnology, Zhejiang Gongshang University, Hangzhou 310035, China
| | - Huifeng Lu
- Department of Environmental Engineering, Zhejiang University, Hangzhou 310058, China
| | - Xiangyang Xu
- Department of Environmental Engineering, Zhejiang University, Hangzhou 310058, China
| | - Wenbing Li
- Key Laboratory of Hangzhou City for Ecosystem Protection and Restoration, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China.
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37
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Li C, Zhang X, Wei L, Wei D, Chen Z, Cao Z, Zhao Q, Chang CC. Molecular biological methods in environmental engineering. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2020; 92:1786-1793. [PMID: 32762138 DOI: 10.1002/wer.1432] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Revised: 07/08/2020] [Accepted: 07/30/2020] [Indexed: 06/11/2023]
Abstract
Microbes are sensitive to environmental changes and can respond in a short time. Genomics, proteomics, transcriptomics, metabolomics, and multigroup association are used to characterize the composition, function, and metabolism of microorganisms, and to evaluate the environment according to the changes in microorganisms, which has important reference and guiding significance of environmental monitoring, management, and repair. In this paper, the application of molecular biological methods to study environmental microorganisms in the fields of wastewater treatment, pollution control, soil improvement, and environmental monitoring in 2019 is reviewed.
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Affiliation(s)
- Chunying Li
- School of Energy and Civil Engineering, Harbin University of Commerce, Harbin, China
| | - Xinxin Zhang
- Guangzhou HKUST Fok Ying Tung Research Institute, Guangzhou, China
| | - Li Wei
- Guangzhou HKUST Fok Ying Tung Research Institute, Guangzhou, China
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, China
| | - Dong Wei
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, China
| | - Zhongxi Chen
- Daqing Oil-field Design and Research Institute, Daqing, China
| | - Zhenkun Cao
- Daqing Oil-field Design and Research Institute, Daqing, China
| | - Qiushi Zhao
- Daqing Oil-field Design and Research Institute, Daqing, China
| | - Chein-Chi Chang
- Department of Engineering and Technical Services, DC Water and Sewer Authority, Washington, DC, USA
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38
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Lan Z, Yang J, Feng L, Yu H, Ye X, Yang G, Gao H, Zhou J. Comparative analysis of denitrification performance, denitrifying community and functional genes to oxytetracycline exposure between single and hybrid biodegradable polymers supported solid-phase denitrification systems. Biodegradation 2020; 31:289-301. [PMID: 32920674 DOI: 10.1007/s10532-020-09910-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2020] [Accepted: 09/05/2020] [Indexed: 02/07/2023]
Abstract
Biodegradable carrier are vital for the solid-phase denitrification (SPD) systems for treating nitrate-rich water. Two solid-phase denitrification reactors were developed with both 200 g L-1 of single (polycaprolactone, PCL) (R1) and hybrid solid carbon sources (PCL/polylactic acid (PLA) /polyhydroxyalkanoates (PHA)) (R2) to examine the denitrification performance, denitrifying community and functional genes to various oxytetracycline (OTC) exposure in this study, respectively. Complete denitrification performance was achieved in the both SPD systems at low stress of OTC (1 mg L-1), but then dramatically reduced to less than 20% of nitrate reduction efficiency after one-month high OTC stress (10 mg L-1), and rapidly recovered to stable nitrate removal rates of 76.77 ± 5.48% (R1) and 40.68 ± 4.40% (R2) after the next day of no OTC stress. However, the reactor R1 with single PCL carriers acquired more efficient nitrate removal rate than that of reactor R2 at the high OTC stress and recovery phase with OTC stress, mainly due to the more organics availability from the single PCL carriers. The richness and diversity of nirK and nirS deintrifiers significantly declined at high OTC stress, and much more of those occurred in biofilm R1 with more organics availability. Besides, biofilm R1 achieved much more abundant periplasmic nitrate reductase, nitrite reductase genes and tetracycline resistance genes after high OTC stress, which explained the potential resistance to OTC and rapid recovery efficiency after no stress of OTC. Thus, the organics availability played an important role in assuring SPD system to be efficient under high OTC stress.
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Affiliation(s)
- Zeyu Lan
- Department of Environment Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China
| | - Jingyi Yang
- Department of Environment Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China
| | - Lijuan Feng
- Department of Environment Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China.
| | - Hui Yu
- Department of Environment Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China
| | - Xin Ye
- Department of Environment Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China
| | - Guangfeng Yang
- Department of Environment Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China
| | - Huiming Gao
- Department of Environment Science and Engineering, Zhejiang Ocean University, Zhoushan, 316022, People's Republic of China
| | - Jiaheng Zhou
- College of Civil Engineering and Architecture, Zhejiang University of Technology, Hangzhou, 310014, People's Republic of China
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Jiang L, Wu A, Fang D, Zhang Y, Shen Q, Xu X, Ji F. Denitrification performance and microbial diversity using starch-polycaprolactone blends as external solid carbon source and biofilm carriers for advanced treatment. CHEMOSPHERE 2020; 255:126901. [PMID: 32387904 DOI: 10.1016/j.chemosphere.2020.126901] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Revised: 03/25/2020] [Accepted: 04/24/2020] [Indexed: 05/21/2023]
Abstract
Enhanced nitrate removal from the secondary effluent in municipal wastewater treatment plants (WWTPs) is essential for avoiding water eutrophication. To this end, a vertical baffled solid-phase denitrification reactor (VBSDR) was developed using a starch and polycaprolactone (PCL) blend plate (S-PCL) as a carbon source and biofilm carrier. In this study, we evaluated the denitrification performance and microbial diversity of the VBSDR. The results of the Fourier transform infrared spectroscopy (FTIR), carbon leaching experiment, and scanning electron microscopy (SEM) demonstrated that the S-PCL structure can be attached and degraded more rapidly. Furthermore, the denitrification performance under varied operational conditions, i.e., influent nitrate loading rate (NLR) and operating temperature, was also investigated. Herein, when treating low C/N ratio and low-strength wastewater, a high denitrification rate (DR) [0.33 gN/(L·d)] was achieved. The effect of temperature on DR can be described by the Arrhenius-type equation, which shows that low temperature has a negative influence on DR and nitrate removal efficiency. Furthermore, DR was simultaneously affected by the NLR and temperature. The microbial diversity and community structure were determined by Illumina high-throughput sequencing. The special carbon source led to Acidovorax (denitrifying bacteria) and Flavobacterium (hydrolysis acidifying bacteria) being the VBSDR biofilm's most predominant functional bacteria at the genus level.
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Affiliation(s)
- Lei Jiang
- Key Laboratory of Three Gorges Reservoir Region's Eco-Environment, Ministry of.Education, Chongqing University, Chongqing, 400045, China
| | - Anqi Wu
- Shandong Urban and Rural Planning Design Institute, Jinan, 250013, China
| | - Dexin Fang
- Key Laboratory of Three Gorges Reservoir Region's Eco-Environment, Ministry of.Education, Chongqing University, Chongqing, 400045, China
| | - Yifang Zhang
- North China Municipal Engineering Design and Research Institute, Tianjin, 300381, China
| | - Qiushi Shen
- Key Laboratory of Three Gorges Reservoir Region's Eco-Environment, Ministry of.Education, Chongqing University, Chongqing, 400045, China
| | - Xiaoyi Xu
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou, 215009, China
| | - Fangying Ji
- Key Laboratory of Three Gorges Reservoir Region's Eco-Environment, Ministry of.Education, Chongqing University, Chongqing, 400045, China.
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Ruan Y, Ma B, Cai C, Cai L, Gu J, Lu HF, Xu XY, Zhang M. Kinetic affinity index informs the divisions of nitrate flux in aerobic denitrification. BIORESOURCE TECHNOLOGY 2020; 309:123345. [PMID: 32305844 DOI: 10.1016/j.biortech.2020.123345] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 04/01/2020] [Accepted: 04/07/2020] [Indexed: 06/11/2023]
Abstract
Aerobic denitrification is attracting increasing attention since its advantage of complete nitrogen removal in a single aerobic reactor with simplified configurations. This study investigated the nitrate kinetic affinity (half-saturation index, Km) by an isolated aerobic denitrifier named P. balearica strain RAD-17. It turned out that strain RAD-17 had a high Km of 162.5 mg-N/L and maximum nitrate reduction rate of 21.7 mg-N/(L•h), enabling it to treat high-strength nitrogen wastewater with high efficiency. Further analysis illustrated that Km was the critical value for the change of growth yield rate along initial nitrate concentrations. Nitrogen balance results elucidated an opposite nitrogen flux to cell synthesis and nitrogen loss during aerobic denitrification. Moreover, the expression of functional genes provided proofs for these phenotypic results at transcriptional level. Consequently, Km could be an indicator for nitrate flux division directing to respiration and assimilation in aerobic denitrifiers, shedding light on its regulation for wastewater treatment.
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Affiliation(s)
- Yunjie Ruan
- Institute of Agricultural Bio-Environmental Engineering, College of Bio-Systems Engineering and Food Science, Zhejiang University, Hangzhou 310058, PR China; The Rural Development Academy, Zhejiang University, Hangzhou 310058, PR China
| | - Bin Ma
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Chen Cai
- Advanced Water Management Centre, Faculty of Engineering, Architecture and Information Technology, The University of Queensland, Brisbane, QLD 4072, Australia
| | - Lei Cai
- Laboratory of Microbial Resources, College of Food Science and Biotechnology, Zhejiang Gongshang University, Hangzhou 310035, China
| | - Jun Gu
- Advanced Environmental Biotechnology Centre, Nanyang Environment & Water Research Institute, Nanyang Technological University, Singapore, Singapore
| | - Hui-Feng Lu
- Department of Environmental Engineering, Zhejiang University, Hangzhou 310058, China
| | - Xiang-Yang Xu
- Department of Environmental Engineering, Zhejiang University, Hangzhou 310058, China
| | - Meng Zhang
- Department of Environmental Engineering, Zhejiang University, Hangzhou 310058, China; Advanced Environmental Biotechnology Centre, Nanyang Environment & Water Research Institute, Nanyang Technological University, Singapore, Singapore.
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41
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Xie F, Ma A, Zhou H, Liang Y, Yin J, Ma K, Zhuang X, Zhuang G. Niche differentiation of denitrifying anaerobic methane oxidizing bacteria and archaea leads to effective methane filtration in a Tibetan alpine wetland. ENVIRONMENT INTERNATIONAL 2020; 140:105764. [PMID: 32371309 DOI: 10.1016/j.envint.2020.105764] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2020] [Revised: 04/21/2020] [Accepted: 04/22/2020] [Indexed: 06/11/2023]
Abstract
Denitrifying anaerobic methane oxidation (DAMO) is a vital methane sink in wetlands. However, the interactions and niche partitioning of DAMO bacteria and archaea in freshwater wetland soils, in addition to the interactions among microorganisms that couple methane and nitrogen cycling is still unclear, despite that these factors may govern the fate of methane and nitrogen in wetlands. Here, we evaluated the vertical distribution of DAMO bacteria and archaea in soil layers along with the potential interactions among populations in the methane-coupled nitrogen cycling microbial community of Tibetan freshwater wetlands. A combination of molecular biology, stable isotope tracer technology, and microbial bioinformatics was used to evaluate these interrelated dynamics. The abundances and potential methane oxidation rates indicated that DAMO bacteria and archaea differentially occupy surface and subsurface soil layers, respectively. The inferred interactions between DAMO bacteria and nitrogen cycling microorganisms within their communities are complex, DAMO bacteria apparently achieve an advantage in the highly competitive environment of surface soils layers and occupy a specific niche in those environments. Conversely, the apparent relationships between DAMO archaea and nitrogen cycling microorganisms are relatively simple, wherein high levels of cooperation are inferred between DAMO archaea and nitrate-producing organisms in subsurface soils layers. These results suggest that the vertical distribution patterns of DAMO bacteria and archaea enable them to play significant roles in the methane oxidation activity of different soil layers and collectively form an effective methane filtration consortium.
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Affiliation(s)
- Fei Xie
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Anzhou Ma
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China.
| | - Hanchang Zhou
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Yu Liang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Jun Yin
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Ke Ma
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China; Sino-Danish College of University of Chinese Academy of Sciences, 101400 Beijing, China
| | - Xuliang Zhuang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Guoqiang Zhuang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China.
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Qi W, Taherzadeh MJ, Ruan Y, Deng Y, Chen JS, Lu HF, Xu XY. Denitrification performance and microbial communities of solid-phase denitrifying reactors using poly (butylene succinate)/bamboo powder composite. BIORESOURCE TECHNOLOGY 2020; 305:123033. [PMID: 32105848 DOI: 10.1016/j.biortech.2020.123033] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Revised: 02/12/2020] [Accepted: 02/15/2020] [Indexed: 06/10/2023]
Abstract
This study explored the denitrification performance of solid-phase denitrification (SPD) systems packed with poly (butylene succinate)/bamboo powder composite to treat synthetic aquaculture wastewater under different salinity conditions (0‰ Vs. 25‰). The results showed composite could achieve the maximum denitrification rates of 0.22 kg (salinity, 0‰) and 0.34 kg NO3--N m-3 d-1 (salinity, 25‰) over 200-day operation. No significant nitrite accumulation and less dissolved organic carbon (DOC) release (<15 mg/L) were found. The morphological and spectroscopic analyses demonstrated the mixture composites degradation. Microbial community analysis showed that Acidovorax, Simplicispira, Denitromonas, SM1A02, Marinicella and Formosa were the dominant genera for denitrifying bacteria, while Aspergillus was the major genus for denitrifying fungus. The co-network analysis also indicated the interactions between bacterial and fungal community played an important role in composite degradation and denitrification. The outcomes provided a potential strategy of DOC control and cost reduction for aquaculture nitrate removal by SPD.
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Affiliation(s)
- Wanhe Qi
- Institute of Agricultural Bio-Environmental Engineering, College of Bio-Systems Engineering and Food Science, Yuhangtang Road 866, Hangzhou 310058, PR China
| | | | - Yunjie Ruan
- Institute of Agricultural Bio-Environmental Engineering, College of Bio-Systems Engineering and Food Science, Yuhangtang Road 866, Hangzhou 310058, PR China; The Rural Development Academy, Zhejiang University, Yuhangtang Road 866, Hangzhou 310058, PR China.
| | - Yale Deng
- Aquaculture and Fisheries Group, Department of Animal Sciences, Wageningen University, 6708 WD Wageningen, The Netherlands
| | - Ji-Shuang Chen
- Institute of Bioresource Engineering, Nanjing Technology University, Nanjing 210009, PR China; Bioresource Institute for Healthy Utilization (BIHU), Zunyi Medical University, Zunyi, Guizhou 563000, China
| | - Hui-Feng Lu
- Department of Environmental Engineering, Zhejiang University, Hangzhou 310058, China
| | - Xiang-Yang Xu
- Department of Environmental Engineering, Zhejiang University, Hangzhou 310058, China
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Chen Z, Jiang Y, Chang Z, Wang J, Song X, Huang Z, Chen S, Li J. Denitrification characteristics and pathways of a facultative anaerobic denitrifying strain, Pseudomonas denitrificans G1. J Biosci Bioeng 2020; 129:715-722. [DOI: 10.1016/j.jbiosc.2019.12.011] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2019] [Revised: 11/19/2019] [Accepted: 12/27/2019] [Indexed: 11/25/2022]
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Li D, Liang X, Wu C. Characteristics of Nitrogen Removal and Extracellular Polymeric Substances of a Novel Salt-Tolerant Denitrifying Bacterium, Pseudomonas sp. DN-23. Front Microbiol 2020; 11:335. [PMID: 32210936 PMCID: PMC7067702 DOI: 10.3389/fmicb.2020.00335] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Accepted: 02/17/2020] [Indexed: 11/13/2022] Open
Abstract
Extracellular polymeric substances (EPS) influence the auto-aggregation performance of cells and play an important role in nitrogen removal during wastewater treatment. In this study, a salt-tolerant aerobic denitrifying bacterium was isolated from tannery wastewater and identified as Pseudomonas sp. DN-23. The strain exhibited significant growth and denitrifying performance, with NaCl contents ranging from 0 to 50 g/L, and high antioxidative enzyme activity, especially that of catalase (CAT), was detected under salt stress. Even greater auto-aggregation ability was observed with elevated NaCl content. Extinction-emission matrix (EEM) and Fourier-transform infrared (FTIR) spectrum analyses showed that the main components of EPS were proteins and polysaccharides. The polysaccharide content was almost unaffected by NaCl stress, while the protein content increased with NaCl stress, and the proteins may play a more important role in auto-aggregation. Analysis of the contents of each protein's secondary structure suggested that β-Sheets increased with increasing NaCl content, which may be related to the increase of auto-aggregation ability in response to NaCl stress. Therefore, NaCl stress increased the auto-aggregation performance by altering the compositions of EPS and the distribution of protein secondary structures. This study provided further insight into the denitrifying performance, and the relationship between aggregation ability and EPS characteristics under NaCl stress.
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Affiliation(s)
- Dan Li
- College of Biomass Science and Engineering, Sichuan University, Chengdu, China
- Key Laboratory of Leather Chemistry and Engineering, Ministry of Education, Sichuan University, Chengdu, China
| | - Xihong Liang
- College of Biomass Science and Engineering, Sichuan University, Chengdu, China
- Key Laboratory of Leather Chemistry and Engineering, Ministry of Education, Sichuan University, Chengdu, China
| | - Chongde Wu
- College of Biomass Science and Engineering, Sichuan University, Chengdu, China
- Key Laboratory of Leather Chemistry and Engineering, Ministry of Education, Sichuan University, Chengdu, China
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Yuan S, Meng F. Ecological insights into the underlying evolutionary patterns of biofilm formation from biological wastewater treatment systems: Red or Black Queen Hypothesis? Biotechnol Bioeng 2020; 117:1270-1280. [PMID: 31994719 DOI: 10.1002/bit.27289] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2019] [Revised: 01/17/2020] [Accepted: 01/26/2020] [Indexed: 12/18/2022]
Abstract
Interspecies interactions and phylogenetic distances were studied to reveal the underlying evolutionary adaptations of biofilms sourced from wastewater treatment processes. Based on 380 pairwise cocultures of 40 strains from two microbial aggregates (surface-attached and mobile aggregates [flocs]) at two substrate concentrations (LB broth and 0.1× LB broth), interspecies interactions were explored using biofilm classification schemes. There was a strong source-dependence of biofilm development formed by the monocultures, that is, a higher biofilm formation potential for strains from attached aggregates than for those from sludge flocs at both substrate concentrations. Interestingly, the results showed that total biofilm reduction was dominant in the dual-species biofilm sourced from flocs in both LB broth (67.37%) and 0.1× LB broth (64.21%), indicating high interspecific competition in mobile aggregates and the independence of substrate concentrations. However, biofilm reduction was higher (33.68%) than induction (19.37%) for the biofilms formed by surface-attached aggregates in LB broth, while the opposite trend was apparent in 0.1× LB broth, suggesting the occurrence of indeterministic processes for biofilm formation and important roles of substrate concentrations. In addition, the more closely related phylogenetic relationships of cocultures from mobile aggregates were consistent with higher competition compared with those from surface-attached aggregates. Overall, the underlying evolutionary patterns of biofilms formed from mobile aggregates consistently followed the essence of the "Red Queen Hypothesis," while biofilms developed from surface-attached aggregates were not deterministic. This study advanced our understanding of biofilm-related treatment processes using the principles of microbial ecology.
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Affiliation(s)
- Shasha Yuan
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, China.,Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, China
| | - Fangang Meng
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, China.,Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, China
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Nitrogen Removal Performance and Metabolic Pathways Analysis of a Novel Aerobic Denitrifying Halotolerant Pseudomonas balearica strain RAD-17. Microorganisms 2020; 8:microorganisms8010072. [PMID: 31906569 PMCID: PMC7022906 DOI: 10.3390/microorganisms8010072] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2019] [Revised: 12/21/2019] [Accepted: 12/24/2019] [Indexed: 11/17/2022] Open
Abstract
An aerobic denitrification strain, Pseudomonas balearica RAD-17, was identified and showed efficient inorganic nitrogen removal ability. The average NO3−-N, NO2−-N, and total ammonium nitrogen (TAN) removal rate (>95% removal efficiency) in a batch test was 6.22 mg/(L∙h), 6.30 mg/(L∙h), and 1.56 mg/(L∙h), respectively. Meanwhile, optimal incubate conditions were obtained through single factor experiments. For nitrogen removal pathways, the transcriptional results proved that respiratory nitrate reductases encoded by napA, which was primarily performed in aerobic denitrification and cell assimilation, were conducted by gluS and gluD genes for ammonium metabolism. In addition, adding the strain RAD-17 into actual wastewater showed obvious higher denitrification performance than in the no inoculum group (84.22% vs. 22.54%), and the maximum cell abundance achieved 28.5 ± 4.5% in a ratio of total cell numbers. Overall, the efficient nitrogen removal performance plus strong environmental fitness makes the strain RAD-17 a potential alternative for RAS (recirculating aquaculture system) effluent treatment.
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Feed Types Driven Differentiation of Microbial Community and Functionality in Marine Integrated Multitrophic Aquaculture System. WATER 2019. [DOI: 10.3390/w12010095] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Integrated multi trophic aquaculture (IMTA) improves the production of aquatic animals by promoting nutrient utilization through different tropical levels. Microorganisms play an important role in elements cycling, energy flow and farmed-species health. The aim of this study was to evaluate how feed types, fresh frozen fish diet (FFD) or formulated diet (FD), influence the microbial community diversity and functionality in both water and sediment in a marine IMTA system. Preferable water quality, higher animal yields and higher cost efficiency were achieved in the FD pond. Feed types changed the pond bacterial community distribution, especially in the rearing water. The FFD pond was dominated with Cyanobacteria in the water, which played an important role in nitrogen fixation through photosynthesis due to the high nitrogen input of the frozen fish diet. The high carbohydrate composition in the formulated diet triggered higher metabolic pathways related to carbon and lipid metabolism in the water of the FD pond. Sediment had significantly higher microbial diversity than the rearing water. In sediment, the dominating genus, Sulfurovum and Desulfobulbus, were found to be positively correlated by network analysis, which had similar functionality in sulfur transformation. The relatively higher rates of antibiotic biosynthesis in the FFD sediment might be related to the pathogenic bacteria introduced by the trash fish diet. The difference in microbial community composition and metabolic pathways may be associated with the different pathways for nutrient cycling and animal growth performance. The formulated diet was determined to be more ecologically and economically sustainable than the frozen fish diet for marine IMTA pond systems.
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Rajta A, Bhatia R, Setia H, Pathania P. Role of heterotrophic aerobic denitrifying bacteria in nitrate removal from wastewater. J Appl Microbiol 2019; 128:1261-1278. [PMID: 31587489 DOI: 10.1111/jam.14476] [Citation(s) in RCA: 74] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Revised: 09/30/2019] [Accepted: 10/01/2019] [Indexed: 11/27/2022]
Abstract
With the increase in industrial and agricultural activities, a large amount of nitrogenous compounds are released into the environment, leading to nitrate pollution. The perilous effects of nitrate present in the environment pose a major threat to human and animal health. Bioremediation provides a cost-effective and environmental friendly method to deal with this problem. The process of aerobic denitrification can reduce nitrate compounds to harmless dinitrogen gas. This review provides a brief view of the exhaustive role played by aerobic denitrifiers for tackling nitrate pollution under different ecological niches and their dependency on various environmental parameters. It also provides an understanding of the enzymes involved in aerobic denitrification. The role of aerobic denitrification to solve the issues faced by the conventional method (aerobic nitrification-anaerobic denitrification) in treating nitrogen-polluted wastewaters is elaborated.
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Affiliation(s)
- A Rajta
- Department of Biotechnology, University Institute of Engineering and Technology, Panjab University, Chandigarh, India
| | - R Bhatia
- Department of Biotechnology, University Institute of Engineering and Technology, Panjab University, Chandigarh, India
| | - H Setia
- Department of Biotechnology, University Institute of Engineering and Technology, Panjab University, Chandigarh, India
| | - P Pathania
- Department of Biotechnology, University Institute of Engineering and Technology, Panjab University, Chandigarh, India
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