Nitrate reduced arsenic redox transformation and transfer in flooded paddy soil-rice system

Effects of denitrification on speciation and redistribution of arsenic in estuarine sediments

Microbially-mediated redox processes involving arsenic (As) and its host minerals significantly contribute to the mobilization of As in estuarine sediments. Despite its significance, the coupling between As dynamics and denitrification processes in these sediments is not well understood. This study employed sequential sediment extractions and simultaneous monitoring of dissolved iron (Fe), nitrogen (N), and sulfur (S) to investigate the impact of nitrate (NO3-) on the speciation and redistribution of As, alongside changes in microbial community composition. Our results indicated that NO3- additions significantly enhance anaerobic arsenite (As(III)) oxidation, facilitating its immobilization by increased adsorption onto sediment matrices in As-contaminated estuarine settings. Furthermore, NO3- promoted the conversion of As bound to troilite (FeS) and pyrite (FeS2) into forms associated with Fe oxides, challenging the previously assumed stability of FeS/FeS2-bound As in such environments. Continuous NO3- additions ensured As and Fe oxidation, thereby preventing their reductive dissolution and stabilizing the process that reduces As mobility. Changes in the abundance of bacterial communities and correlation analyses revealed that uncultured Anaerolineaceae and Thioalkalispira may be the main genus involved in these transformations. This study underscores the critical role of NO3- availability in modulating the biogeochemical cycle of As in estuarine sediments, offering profound insights for enhancing As immobilization techniques and informing environmental management and remediation strategies in As-contaminated coastal regions.

Insight into microbial functional genes' role in geochemical distribution and cycling of uranium: The evidence from covering soils of uranium tailings dam

There exists a research gap on microbial functional genes' role in U geochemical behavior and cycling in U contaminated soils, which has been poorly understood. Herein, 16S rRNA sequencing gene amplifiers and metagenome analysis were applied to probe microbial community structure and functional metabolism of different depth layers of covering soils in U tailings dam. Results showed that the soils were highly enriched with U (47.5-123.3 mg/kg) and a remarkable portion of 35-70% was associated with the labile fractions. It was found that U geochemical distribution was notably interacted with functional genes from N, S, Fe and P related microbes. Importantly, diminution in gene NirK and amplification in nrfH involving in nitrate reduction could induce microbial tolerance to U. Moreover, gene Sat in microbial sulfate reduction, NosZ and NorB in nitrate reduction, phnD, upgA and upgC in P transportation and phnI, phnK, phoA and opd in microbial organic P mineralization, were all closely linked to U geochemical distribution, species and cycling. All these findings disclose the functional genes that may control the transfer and transformation behavior of U in soil environment, which provides important and novel indications for the bio-remediation strategies towards U polluted sites.

Pot experimental trial for assessing the role of different composts on decontamination and reclamation of a polluted soil from an illegal dump site in Southern Italy using Brassica juncea and Sorghum bicolor

A pot experiment was carried out to evaluate the remediation potential of Brassica juncea and Sorghum bicolor in the decontamination of soil polluted with heavy metals such as copper, lead, tin, and zinc along with polychlorinated biphenyls, polycyclic aromatic hydrocarbons, and heavy hydrocarbons. Two composts obtained from different composting processes were tested as biostimulating agents. At the end of the trial, the effect of plant/compost combinations on soil microbial composition, contaminant removal, biochemical indicators, and plant biomass production was determined. The results highlighted that compost addition improved plant biomass despite slowing down plants' removal of organic and inorganic contaminants. In addition, compost partially enhanced the soil biochemical indicators and modified the relative abundance of the rhizosphere microorganisms. Sorghum showed better mitigation performance than Brassica due to its higher growth. The soil fertility level, the choice of plant species, and microbial richness were found fundamental to perform soil remediation. In contrast, compost was relevant for a higher crop biomass yield.

Straw incorporation induces rice straighthead disease in As-contaminated paddy soil

Rice straw incorporation is globally recognized as a viable alternative to incineration. However, it might lead to arsenic (As) methylation in soils, resulting in increased accumulation of methylated As in rice plants, potentially contributing to the emergence of rice straighthead disease. To evaluate the effect of straw incorporation on the As transformation in the paddy field system, we conducted a pot experiment for rice cultivation in two paddy soils with different As background levels and also characterized the response of the soil microbial community to straw incorporation. The results showed that straw incorporation elevated the total and methylated As concentration within the soil solution and rice plants, which in turn reduced rice seed setting rate and yield, and caused straighthead disorder in rice cultivated in soils with high As levels. 16S rRNA-based sequencing demonstrated reduced abundance and diversity of microorganisms upon adding straw. Notably, the dominant phylum, Bacteroidetes, exhibited a significant increase in abundance due to straw integration, while the abundance of Proteobacteria and Acidobacteria decreased. At the family level, the prevalence of Rikenellaceae increased only in soils contaminated with As following straw incorporation. Redundancy analysis showed positive associations between Rikenellaceae and levels of methylated As present in both soil porewater and rice husks, suggesting a potentially pivotal role of Rikenellaceae in the As methylation process after straw integration. These findings collectively emphasize that including straw can reshape the soil's microbial community and amplify As methylation in the soil, thereby promoting the uptake and accumulation of methylated As in rice and inducing straighthead disease in As-contaminated soil.

Methylation of arsenic in rice: Mechanisms, factors, and mitigation strategies

Arsenic contamination in rice poses a significant health risk to rice consumers across the globe. This review examines the impact of water source and type on the speciation and methylation of arsenic in rice. The review highlights that groundwater used for irrigation in arsenic-affected regions can lead to higher total arsenic content in rice grains and lower proportions of methylated arsenic species. The methylation of As in rice is influenced by microbial activity in groundwater, which can methylate arsenic that is taken up by rice plants. Reclaimed water irrigation can also increase the risk of arsenic accumulation in rice crops, although the use of organic amendments and proper water management practices can reduce arsenic accumulation. Different water management regimes, such as continuous flooding irrigation, alternate wetting and drying, aerobic rice cultivation, and subsurface drip irrigation, can affect the speciation and methylation of As in rice. Continuous flooding irrigation reduces methylation of As due to anaerobic conditions, while alternate wetting and drying and aerobic rice cultivation promote methylation by creating aerobic conditions that stimulate the activity of arsenic-methylating microorganisms. Subsurface drip irrigation reduces total arsenic content in rice grains and increases the proportion of less toxic methylated arsenic species. The review also discusses the complex mechanisms of As-methylation and transport in rice, emphasizing the importance of understanding these mechanisms to develop strategies for reducing arsenic uptake in rice plants and mitigating health risks. The review addresses the impact of water source and type on arsenic speciation and methylation in rice and highlights the need for proper water management and treatment measures to ensure the safety of the food supply as well as aiding future research and policies to reduce health risks from rice consumption. The critical information gaps that this review addresses include the specific effects of different water management regimes on As-methylation, the role of microbial communities in groundwater in As-methylation, and the potential risks associated with the use of reclaimed water for irrigation.

Interplay of legacy irrigation and nitrogen fertilizer inputs to spatial variability of arsenic and uranium within the deep vadose zone

The vadose zone is a reservoir for geogenic and anthropogenic contaminants. Nitrogen and water infiltration can affect biogeochemical processes in this zone, ultimately affecting groundwater quality. In this large-scale field study, we evaluated the input and occurrence of water and nitrogen species in the vadose zone of a public water supply wellhead protection (WHP) area (defined by a 50-year travel time to groundwater for public supply wells) and potential transport of nitrate, ammonium, arsenic, and uranium. Thirty-two deep cores were collected and grouped by irrigation practices: pivot (n = 20), gravity (n = 4) irrigated using groundwater, and non-irrigated (n = 8) sites. Beneath pivot-irrigated sites, sediment nitrate concentrations were significantly (p < 0.05) lower, while ammonium concentrations were significantly (p < 0.05) higher than under gravity sites. The spatial distribution of sediment arsenic and uranium was evaluated against estimated nitrogen and water loading beneath cropland. Irrigation practices were randomly distributed throughout the WHP area and presented a contrasting pattern of sediment arsenic and uranium occurrence. Sediment arsenic correlated with iron (r = 0.32, p < 0.05), uranium negatively correlated to sediment nitrate (r = -0.23, p < 0.05), and ammonium (r = -0.19 p < 0.05). This study reveals that irrigation water and nitrogen influx influence vadose zone geochemistry and mobilization of geogenic contaminants affecting groundwater quality beneath intensive agricultural systems.

Can simultaneous immobilization of arsenic and cadmium in paddy soils be achieved by liming?

Liming acidic paddy soils to near-neutral pH is the most cost-effective strategy to minimize cadmium (Cd) accumulation by rice. However, the liming-induced effect on arsenic (As) (im)mobilization remains controversial and is called upon for further investigation, particularly for the safe utilization of paddy soils co-contaminated with As and Cd. Here, we explored As and Cd dissolution along pH gradients in flooded paddy soils and extracted key factors accounting for their release discrepancy with liming. The minimum As and Cd dissolution occurred concurrently at pH 6.5-7.0 in an acidic paddy soil (LY). In contrast, As release was minimized at pH < 6 in the other two acidic soils (CZ and XX), while the minimum Cd release still appeared at pH 6.5-7.0. Such a discrepancy was determined largely by the relative availability of Fe under overwhelming competition from dissolved organic carbon (DOC). A mole ratio of porewater Fe/DOC at pH 6.5-7.0 is suggested as a key indicator of whether co-immobilization of As and Cd can occur in flooded paddy soils with liming. In general, a high mole ratio of porewater Fe/DOC (≥ 0.23 in LY) at pH 6.5-7.0 can endow co-immobilization of As and Cd, regardless of Fe supplement, whereas such a case is not in the other two soils with lower Fe/DOC mole ratios (0.01-0.03 in CZ and XX). Taking the example of LY, the introduction of ferrihydrite promoted the transformation of metastable As and Cd fractions to more stable ones in the soil during 35 days of flooded incubation, thus meeting a class I soil for safe rice production. This study demonstrates that the porewater Fe/DOC mole ratio can indicate a liming-induced effect on co-(im)mobilization of As and Cd in typical acidic paddy soils, providing new insights into the applicability of liming practice for the paddy soils.

Insight into universality and characteristics of nitrate reduction coupled with arsenic oxidation in different paddy soils

Nitrate reduction coupled with arsenic (As) oxidation strongly influences the bioavailability and toxicity of As in anaerobic environments. In the present study, five representative paddy soils developed from different parent materials were used to investigate the universality and characteristics of nitrate reduction coupled with As oxidation in paddy soils. Experimental results indicated that 99.8 % of highly toxic aqueous As(III) was transformed to dissolved As(V) and Fe-bound As(V) in the presence of nitrate within 2-8 d, suggesting that As was apt to be reserved in its low-toxic and nonlabile form after nitrate treatment. Furthermore, nitrate additions also significantly induced the higher abundance of 16S rRNA and As(III) oxidase (aioA) genes in the five paddy soils, especially in the soils developed from purple sand-earth rock and quaternary red clay, which increased by 10 and 3-5 times, respectively, after nitrate was added. Moreover, a variety of putative novel nitrate-dependent As(III)-oxidizing bacteria were identified based on metagenomic analysis, mainly including Aromatoleum, Paenibacillus, Microvirga, Herbaspirillum, Bradyrhizobium, Azospirillum. Overall, all these findings indicate that nitrate reduction coupled with As(III) oxidation is an important nitrogen-As coupling process prevalent in paddy environments and emphasize the significance of developing and popularizing nitrate-based biotechnology to control As pollution in paddy soils and reduce the risk of As compromising food security.

Multi-site field trials demonstrate the effectiveness of silicon fertilizer on suppressing dimethylarsenate accumulation and mitigating straighthead disease in rice

Rice accumulates both inorganic arsenic (iAs) and organic As species such as dimethylarsenate (DMA). Although DMA is less toxic to humans, it has been shown in hydroponic studies to induce rice straighthead disease, a physiological disorder prevalent in some rice growing regions causing large yield losses. We investigated the effects of different amendments on As species dynamics in soil porewater, accumulation of As species in rice husks and grains, and the incidence of straighthead disease in five field experiments conducted over 2 years at three sites where straighthead disease was observed in previous seasons. The amendments included silicon (Si) fertilizer, micronized zero valent iron (μZVI), sulfate, nitrate, Si-rich biochar, and a mixture of trace and major elements. Straighthead disease was observed in all five experiments. Rice panicles showing the straighthead disease symptoms contained much higher DMA concentrations in husks and grains than normal panicles. Silicon fertilizer was highly effective at decreasing the disease incidence rate and increasing seed setting rate, resulting in 14.9-58.1% increase in grain yield. Silicon fertilizer increased soil porewater iAs and DMA concentrations, but decreased iAs and DMA accumulation in husks and grains, suggesting that Si suppressed the uptake of iAs and DMA by rice plants. Other amendments alleviated straighthead disease to smaller extents than Si fertilizer, with the effect of biochar and the mixture of trace and major elements likely also being attributed to the addition of Si. Results from this field-based study demonstrate that excessive accumulation of DMA is the main cause of rice straighthead disease and Si fertilizer is highly effective at mitigating this disease by suppressing DMA accumulation.

Distinct arsenic uptake feature in rice reveals the importance of N fertilization strategies

The environmental behavior of arsenic (As) is commonly affected by the biogeochemical processes of iron (Fe) and nitrogen (N). In this study, field experiments were conducted to explore As uptake in rice and As translation and distribution in As-contaminated iron-rich paddy soils after applying different forms of N fertilizers, including urea (CO(NH2)2), ammonium bicarbonate (NH4HCO3), nitrate of potash (KNO3), and ammonium bicarbonate + nitrate of potash (NH4HCO3 + KNO3). The results indicated that applying nitrate N fertilizer inhibited the reduction and dissolution of As-bearing iron minerals and promoted microbial-mediated As(III) oxidation in flooded soil, thus reducing the soil As bioavailability. The concentrations of total As and inorganic As ratio (iAs/TAs) in rice grain decreased by 32.4 % and 15.4 %, respectively. However, the application of ammonium nitrogen promoted the reductive dissolution of As-bearing iron minerals and stimulated microbial As(V) reduction in flooded soil, leading to the release of As from soil to porewater. The total As concentration and inorganic As uptake ratio in rice grain increased by 20.1 % and 6.2 %, respectively, when urea was applied, and by 29.6 % and 10.5 %, respectively, when ammonium bicarbonate was applied. However, the simultaneous application of NH4+ and NO3- had no significant effect on As concentration in rice grain and its transformation in paddy soils. Ammonium nitrogen enhanced the organic As concentration in rice grain because the increased As(III) promoted As methylation in soil. In contrast, nitrate decreased the organic As uptake by rice grain because the decreased As(III) diminished As methylation in soil. The results provide reasonable N fertilization strategies for regulating the As biogeochemical process and reducing the risk of As contamination in rice.

Enhanced oxidation and stabilization of arsenic in a soil-rice system by phytosynthesized iron oxide nanomaterials: Mechanistic differences under flooding and draining conditions

Despite arsenic (As) bioavailability being highly correlated with water status and the presence of iron (Fe) minerals, limited information is currently available on how externally applied Fe nanomaterials in soil-rice systems affect As oxidation and stabilization during flooding and draining events. Herein, the stabilization of As in a paddy soil by a phytosynthesized iron oxide nanomaterials (PION) and the related mechanism was investigated using a combination of chemical extraction and functional microbe analysis in soil at both flooding (60 d) and draining (120 d) stages. The application of PION decreased both specifically bound and non-specifically bound As. The As content in rice root, stem, husk and grain was reduced by 78.5, 17.3, 8.4 and 34.4%, respectively, whereas As(III) and As(V) in root declined by 96.9 and 33.3% for the 1% PION treatment after 120 d. Furthermore, the 1% PION treatment decreased the ratio of As(III)/As(V) in the rhizosphere soil, root and stem. Although PION had no significant effect on the overall Shannon index, the distribution of some specific functional microbes changed dramatically. While no As(III) oxidation bacteria were found at 60 d in any treatments, PION treatment increased As(III) oxidation bacteria by 3-9 fold after 120 d cultivation. Structural equation model analysis revealed that the ratio of Fe(III)/Fe(II) affected As stabilization directly at the flooding stage, whereas nitrate reduction and As(III) oxidation microbial groups played a significant role in the stabilization of As at the draining stage. These results highlight that PION exhibits a robust ability to reduce As availability to rice, with chemical oxidation, reduction inhibition and adsorption dominating at the flooding stage, while microbial oxidation, adsorption and coprecipitation dominant during draining.

How different nitrogen fertilizers affect arsenic mobility in paddy soil after straw incorporation?

In straw return fields, nitrogen-fertilizers are added to mitigate microbial competition for nitrogen with plants. However, in arsenic (As)-contaminated paddy fields, the specific effects of different nitrogen fertilizers on As mobility after straw incorporation and the interactions among iron(Fe)/carbon(C)/nitrogen(N)/As are not well understood. In the reported microcosm experiment we monitored As-mobility as a function of different dosages of KNO₃, NH₄Cl and rice straw incorporation. Addition of both KNO₃ and NH₄Cl significantly inhibited the As mobilization induced by straw incorporation. Following the KNO₃ addition, the As concentration in porewater dropped by 51-66% after 2 days of the incubation by restraining Fe reduction and enhancing Fe oxidation. High-dose NH₄Cl addition reduced As in porewater by 22-43% throughout the incubation by decreasing porewater pH. High-throughput sequencing results demonstrated that KNO₃ addition enriches both the denitrifying and Fe-oxidizing bacteria, while diminishing Fe-reducing bacteria; NH₄Cl addition has the opposite effect on Fe-reducing bacteria. Network analysis revealed that As and Fe concentrations in porewater were positively correlated with the abundance of denitrifying and Fe-reducing bacteria. This study broadens our insight into the As biogeochemistry associated with the N/C/Fe balance in soil, which are of great significance for agronomic management and mitigation the risk of As-contaminated paddy fields.

Archaea is more important than bacteria in driving soil stoichiometry in phosphorus deficient habitats

Phosphorus deficiency is a critical limit on the cycling of carbon (C), nitrogen (N) and phosphorus (P) in forest ecosystems. Despite the pivotal roles of microbes in driving the biogeochemical cycling of C/N/P, our knowledge on the relationships of soil bacteria and archaea to P deficiency in forest ecosystems remains scarce. Here, we studied 110 acidic soils (average pH 4.5) collected across 700-km subtropical forests with a gradient of available phosphorus (AP) ranging from 0.21 to 17.6 mg/kg. We analyzed the soil C/N/P stoichiometry and studied soil bacterial and archaeal diversity/abundance via high throughput sequencing and qPCR approaches. Our results show that soil P decoupled with N or C when below 3 mg/kg but coupled with C and N when above 3 mg/kg. Archaeal diversity and abundance were significantly higher in low AP (< 3 mg/kg) soils than in high AP (>3 mg/kg) soils, while bacterial were less changed. Compared with bacteria, archaea are more strongly related with soil stoichiometry (C:N, C:P, N:P), especially when AP was less than 3 mg/kg. Taxonomic and functional composition analysis further confirmed that archaeal rather than bacterial taxonomic composition was significantly related with functional composition of microbial communities. Taken together, our results show that archaea are more important than bacteria in driving soil stoichiometry in phosphorus deficient habitats and suggest a niche differentiation of soil bacteria and archaea in regulating the soil C/N/P cycling in subtropical forests.

Arsenic contamination, impact and mitigation strategies in rice agro-environment: An inclusive insight

Arsenic (As) contamination and its adverse consequences on rice agroecosystem are well known. Rice has the credit to feed more than 50% of the world population but concurrently, rice accumulates a substantial amount of As, thereby compromising food security. The gravity of the situation lays in the fact that the population in theAs uncontaminated areas may be accidentally exposed to toxic levels of As from rice consumption. In this review, we are trying to summarize the documents on the impact of As contamination and phytotoxicity in past two decades. The unique feature of this attempt is wide spectrum coverages of topics, and that makes it truly an interdisciplinary review. Aprat from the behaviour of As in rice field soil, we have documented the cellular and molecular response of rice plant upon exposure to As. The potential of various mitigation strategies with particular emphasis on using biochar, seed priming technology, irrigation management, transgenic variety development and other agronomic methods have been critically explored. The review attempts to give a comprehensive and multidiciplinary insight into the behaviour of As in Paddy -Water - Soil - Plate prospective from molecular to post-harvest phase. From the comprehensive literature review, we may conclude that considerable emphasis on rice grain, nutritional and anti-nutritional components, and grain quality traits under arsenic stress condition is yet to be given. Besides these, some emerging mitigation options like seed priming technology, adoption of nanotechnological strategies, applications of biochar should be fortified in large scale without interfering with the proper use of biodiversity.

Rhizobium symbiosis modulates the accumulation of arsenic in Medicago truncatula via nitrogen and NRT3.1-like genes regulated by ABA and linalool

Arsenic (As) contamination is a worldwide problem and threatens human health. Here, we found that Rhizobium symbiosis can improve the tolerance to arsenate [As(V)], and a wild type R. meliloti Rm5038 symbiosis can significantly decrease the accumulation of As in Medicago truncatula shoots. The As content in plants could be decreased by nitrogen and the mutation of nitrate transporter NRT3.1. The expression of M. truncatula NRT3.1-like gene NRT3.1L1 could reverse the As(V)-tolerance phenotype of the Arabidopsis nrt3.1 mutant. Rm5038 symbiosis significantly increased the level of nitrogen in the shoot and reduced the expression of NRT3.1Ls in plants afflicted by As(V). The genetic analyses of aba2-1, pyr1/pyl1/2/4/5/8, and abi1-2/abi2-2/hab1-1/pp2ca-1 mutants revealed that abscisic acid (ABA) signaling regulates the tolerance of plants to As(V). ABA and linalool could promote the expression of NRT3.1Ls, however, their root biosynthesis was inhibited by ammonium, the first form of nitrogen fixed by Rhizobium symbiosis. Moreover, ABA and linalool may also control As and nitrate accumulation in Rhizobium symbionts via signaling pathways other than ammonia and NRT3.1Ls. Thus, Rhizobium symbiosis modulates the accumulation of As in plants via nitrogen and NRT3.1Ls regulated by ABA and linalool, which provides novel approaches to reduce As accumulation in legume crops.

Minerals loaded with oxygen nanobubbles mitigate arsenic translocation from paddy soils to rice

Inhibiting reductive transformation of arsenic (As) in flooded paddy soils is fundamentally important for mitigating As transfer into the food chain. In this study, oxygen-nanobubble-loaded-zeolites (ZON) and -vermiculites (VON) were tested as a novel approach for supplying oxygen to paddy soils to inhibit As influx into rice. The dynamic physio- and bio-chemical variations in the rhizosphere and bulk soil were profiled in a rhizobox experiment. Upon adding ZON and VON, the redox potential and dissolved oxygen consistently increased throughout the cultivation period. The improved redox environment inhibited As(III) release into porewater and increased As(V) adsorbed on crystalline Fe (hydr)oxides, following the reduction of arsC and arrA gene abundances and enhancement of the aioA gene. Moreover, adding ZON and VON promoted root iron plaque formation, which increased As retention on iron plaque. Both ZON and VON treatments mitigated As translocation from soil to rice, meanwhile increasing root and shoot biomass. ZON was superior to VON in repressing As transfer and promoting rice growth due to its higher oxygen loading capacity. This study provides a novel and environment-friendly material to both mitigate the As translocation from paddy soil to rice and improve rice growth.

Influence of environmental factors on arsenite transformation and fate in the Hydrilla verticillata (L.f.) royle - Medium system

Hydrilla verticillata (L.f.) Royle has a great ability to accumulate large amounts of arsenic (As). We studied the influence of phosphorus (P), nitrogen (N), pH, and arsenite (As(III)) on As transformation and fate in the H. verticillata - medium system via orthogonal experimental design. The results showed highest plant growth was under intermediate As(III) in the medium, with Chlorophyll a and Chlorophyll b contents in plant diminishing after 96 h treatment. Exposure to high N, high As(III), intermediate P, and low pH in the medium, the highest total arsenic uptake by plants were 169.1 ± 5.5 μg g^-1 dry weight, with As(III) as the predominant speciation (49.1 ± 4.8% to 88.5 ± 0.2%) in plants. Meanwhile, trace As (mainly arsenate (As(V))) was adsorbed on the surface of H. verticillata, and the adsorption amounts of As(V) increased with increasing As(III) concentrations in the medium. The dominant As species was As(V) in the medium although plant was supplied with As(III), and highest As(III) oxidation proportion in the medium would occur when low N and pH associated with high P and As(III). Collectively, As(III) uptake and transformation by H. verticillata cannot be overlooked in the biogeochemical cycling of As in aquatic environment.

Using rice as a remediating plant to deplete bioavailable arsenic from paddy soils

Rice plant is efficient in arsenic (As) accumulation due to enhanced soil As release under flooded condition and its effective As uptake. Therefore, rice plant can be used to remove bioavailable As from paddy soil. In this study, the depleting dynamics of soil As with rice growth was mapped two-dimensionally with the zirconium-oxide diffusive gradients in thin films (DGT) technique. Further, the key biochemistry promoting soil As bioavailability was studied to better understand the underlying processes. Results revealed that the average DGT-As encompassing the root zone decreased steeply from 331 in the seedling stage to 136 in the heading & flowering stage and further to 118 μg l^-1 at harvest, which was 26% lower than that of the control at 160 μg l^-1. During this process, rhizosphere porewater As developed a dynamic profile similar to Fe and dissolved organic carbon, with the diversity of arrA gene peaking at heading & flowering stage. The data support soil As release from microbial reduction of Fe hydroxides fueled by root exudation as carbon source. Arsenic was mainly accumulated in the roots, accounting for up to 95% of total As in rice plants. Removal of rice roots resulted in ~19% lower DGT-As in post-harvest soil compared to without removing the roots. As a result, a sharp decline in As accumulation in rice plants was obtained in the second planting after removing one crop of rice roots. The results highlight that rice, as a paddy-adapted plant, is effective in As uptake in the roots, and thereby removing rice roots efficiently depletes bioavailable As from paddy soils.

Simultaneous stimulation of arsenic methylation and inhibition of cadmium bioaccumulation in rice grain using zero valent iron and alternate wetting and drying water management

Studies aiming to limit bioaccumulation of arsenic (As) and cadmium (Cd) in rice grain has attracted global attention. In this study, simultaneous impact of zero valent iron (Fe⁰) and various water management regimes (continuous flooding (CF), alternate wetting and drying (AWD) and low water (LW)) on rice grain yield (GYM) and bioaccumulation of As and Cd in unpolished rice grain (URG) were investigated. Compared to respective control treatments, Fe⁰ significantly reduced GYM under LW by 32% (p < 0.001) and significantly increased GYM under AWD by 24% (p = 0.009; F = 5.9) but had no significant effect on GYM under CF water management regime (p > 0.05). The grain harvest index was significantly higher in Fe⁰ amended rice under AWD (67%; p < 0.001) and CF (35%; p = 0.001) compared to those without Fe⁰ amendment. Fe⁰ significantly reduced tAs in URG under LW by 32% (p < 0.017) and significantly increased tAs in URG under AWD by 37% (p = 0.007) but had no significant effect on tAs in URG under CF (p > 0.05). The Cd concentrations were significantly reduced by 51% (p = 0.002) and 61% (p < 0.003) in URG under LW and AWD respectively compared to the respective control treatments. The Dimethylarsinic acid (DMA) in unpolished rice (URG) under AWD (+Fe⁰) was significantly higher (p < 0.01; F = 11.3) compared to that accumulated in URG under AWD(-Fe°). Despite increasing As accumulation in AWD water management, simultaneous use of AWD water management and Fe° increased grain yield, enhanced accumulation of less toxic methylated As in rice grains and accumulated low Cd concentrations comparable to that attainable with CF water management indicating that simultaneous use AWD and Fe° can be effective in controlling Cd accumulation in paddies highly contaminated with Cd.

Effective stabilization of arsenic in contaminated soils with biogenic manganese oxide (BMO) materials

The role of biogenic manganese oxide (BMO) materials on the stabilization of arsenic (As) in contaminated soil was investigated. Experimental results indicated that the addition of BMO was proved to be highly effective to stabilize As in soils. Bioavailable As content was decreased from 4.56 mg kg^-1 in the control samples to 1.72-1.86 mg kg^-1 in BMO-treated soils. X-ray absorption near edge structure (XANES) results confirmed that BMO was mainly responsible for oxidizing As(III) to As(V). Sequential extraction results indicated that the transformation of As fractions was from non-specifically adsorbed fraction to poorly-crystalline hydrous oxides fraction and residual fraction, which can decrease the risk of As in contaminated soils. Moreover, BMO had a higher efficiency in stabilizing As than two types of abiotic Mn oxides. High throughput sequencing analysis indicated that the bacterial community and diversity were significantly changed after BMO treatment. The abundance of Proteobacteria phylum, including Massilia, Phenylobacterium and Sphingomonas genera significantly increased with the increasing amount of BMO. These findings suggested that BMO can be considered as a low cost, high effectiveness and environmental friendliness material for the remediation of As contaminated soils.

Bacterial Communities and Functional Genes Stimulated During Anaerobic Arsenite Oxidation and Nitrate Reduction in a Paddy Soil

Microbial arsenite (As(III)) oxidation associated with nitrate (NO₃^-) reduction might be an important process in diminishing arsenic bioavailability and toxicity to rice when paddy soils are contaminated by arsenic. In a noncontaminated soil, however, the responses of bacterial communities and functional genes to As(III) under nitrate-reducing conditions are poorly understood. In this study, anaerobic paddy soil microcosms were established with As(III) and/or NO₃^- to investigate how the bacterial communities and their functional genes were stimulated during As(III) oxidation and nitrate reduction. Microbial oxidation of As(III) to As(V) was substantially accelerated by nitrate addition, while nitrate reduction was not affected by As(III) addition. Metagenomic analysis revealed that nitrate-reducing bacteria were principally affiliated with Pseudogulbenkiania, with narG, nirS, and norBC genes. Putative As(III)-oxidizing bacteria were dominated by an Azoarcus sp. with As(III) oxidase genes aioA and aioB detected in its draft genome, which also had complete sets of denitrification genes (mainly, napA, nirK, and nosZ). Quantitive PCR analysis confirmed that the abundance of Azoarcus spp., aioA, and nosZ genes was enhanced by As(III) addition. These findings suggest the importance of Azoarcus- and Pseudogulbenkiania-related spp., both of which showed various physio-ecological characteristics for arsenic and nitrogen biogeochemistry, in coupling As(III) oxidation and nitrate reduction in flooded paddy soil.

Removal of labile arsenic from flooded paddy soils with a novel extractive column loaded with quartz-supported nanoscale zero-valent iron

Efficient removal of labile arsenic (As) from paddy soil is a fundamental pathway mitigating As accumulation in rice from a long-term perspective. In this study, a porous and pencil-shaped column prepacked with quartz-supported nanoscale zero-valent iron (NZVI) was designed to extract elevated porewater As from paddy soil under flooded condition. With fine quartz as supporting medium in the core layer, only 0.07% out-migration of the loaded NZVI occurred in arsenite As(III) solution. At pH 5-9, removal of aqueous As(III) with NZVI-column was 73-78%, while silicic acid and phosphate at their environmentally realistic concentrations exhibited 27-30% and 14-17% inhibition on As(III) extraction, respectively. For two paddy soils with slight (S-As) and moderate (M-As) As contamination, four cycles of intermittent extraction with NZVI-column induced steady and marked decrease in porewater As. By the end of four successive extractions, profiles of DGT-labile As in S-As and M-As soils decreased by 22% and 29% on average with simultaneous decline of the most available fraction of soil As (including soluble and exchangeable fraction) by 26% and 17%, respectively. For the post-extracted two soils, As accumulation of rice seedlings declined by 29-57% than those in control. These results identify the effectiveness of NZVI-column in extracting elevated labile As from paddy soils with the aid of flooding. Targeting fast removal of high porewater As, column-extraction could serve as the first step in "remediation train" of paddy soils with relatively high As to shorten cleanup time by rendering much lowered soil As burden for the following phytoextraction and other measures.