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Ranjbar Jafarabadi A, Riyahi Bakhtiari A, Moghimi H, Gorokhova E. Assessment of parent and alkyl -PAHs in surface sediments of Iranian mangroves on the northern coast of the Persian Gulf: Spatial accumulation distribution, influence factors, and ecotoxicological risks. CHEMOSPHERE 2024; 358:142176. [PMID: 38701864 DOI: 10.1016/j.chemosphere.2024.142176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Revised: 04/17/2024] [Accepted: 04/26/2024] [Indexed: 05/05/2024]
Abstract
Spatial patterns, potential origins, and ecotoxicological risk of alkylated (APAH) -and parent -(PPAH) polycyclic aromatic hydrocarbons (PAHs) were studied in mangrove surface sediments along the northern coasts of the Persian Gulf, Iran. The mean total concentrations (ngg-1dw) ∑32PAH, ∑PPAHs and ∑APAHs in sediments were 3482 (1689-61228), 2642 (1109-4849), and 840 (478-1273), respectively. The spatial variability was similar among these PAH groups, with the highest levels occurring in Nayband National Marine Park (NNMP). Physicochemical environmental factors, such as sediment grain size, and total organic carbon (TOC) contents, are significant factors of PAH distribution. These findings suggest that PAH pollution level is moderate-to-high, supporting the current view that mangrove ecosystems are under intensive anthropogenic impacts, such as petrochemical, oil and gas loads, port activities, and urbanization. Non-parametric multidimensional scaling (NPMDS) ordination demonstrated that NNMP mangrove is the critical site exhibiting high loading of PAH pollutants. Here, for the first time in this region, Soil quality guidelines (SQGs), Toxic equivalency quotient (TEQ), Mutagenic equivalency quotient (MEQ), and composition indices comprising Mean maximum permissible concentration quotient (m-MPC-Q), and Mean effect range median quotient (m-ERM-Q) methods were used to have a comprehensive risk assessment for PAH compounds and confirmed medium-to-high ecological risks of PAHs in the study area, particularly in the western part of the Gulf, highlighting the industrial impacts on the environment.
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Affiliation(s)
- Ali Ranjbar Jafarabadi
- Department of Environmental Sciences, Faculty of Natural Resources and Marine Sciences, Tarbiat Modares University, Noor, Mazandaran, Iran.
| | - Alireza Riyahi Bakhtiari
- Department of Environmental Sciences, Faculty of Natural Resources and Marine Sciences, Tarbiat Modares University, Noor, Mazandaran, Iran.
| | - Hamid Moghimi
- Department of Microbial Biotechnology, School of Biology, College of Science, University of Tehran, Enghelab Avenue, Tehran, 14155-6655, Iran
| | - Elena Gorokhova
- Department of Environmental Science, Stockholm University, Stockholm, Sweden
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2
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Wang X, Wu H, Wang L, Wang Y, Wang X, Wang H, Lu Z. Global transcriptional and translational regulation of Sphingomonas melonis TY in response to hyperosmotic stress. ENVIRONMENTAL RESEARCH 2023; 219:115014. [PMID: 36549482 DOI: 10.1016/j.envres.2022.115014] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 11/10/2022] [Accepted: 12/06/2022] [Indexed: 06/17/2023]
Abstract
Hyperosmotic stress is one of the most ubiquitous stress factors in microbial habitats and impairs the efficiency of bacteria performing vital biochemical tasks. Sphingomonas serves as a 'superstar' of plant defense and pollutant degradation, and is widely existed in the environment. However, it is still unclear that how Sphingomonas sp. survives under hyperosmotic stress conditions. In this study, multiomics profiling analysis was conducted with S. melonis TY under hyperosmotic conditions to investigate the intracellular hyperosmotic responses. The transcriptome and proteome revealed that sensing systems, including most membrane protein coding genes were upregulated, genes related to two-component systems were tiered adjusted to reset the whole system, other stress response regulators such as sigma-70 were also significantly tiered upregulated. In addition, transport systems together with compatible solute biosynthesis related genes were significantly upregulated to accumulate intracellular nutrients and compatible solutes. When treated with hyperosmotic stress, redox-stress response systems were triggered and mechanosensitive channels together with ion transporters were induced to maintain cellular ion homeostasis. In addition, cellular concentration of c-di-guanosine monophosphate synthetase (c-di-GMP) was reduced, followed by negative influences on genes involved in flagellar assembly and chemotaxis pathways, leading to severe damage to the athletic ability of S. melonis TY, and causing detachments of biofilms. Briefly, this research revealed a comprehensive response mechanism of S. melonis TY exposure to hyperosmotic stress, and emphasized that flagellar assembly and biofilm formation were vulnerable to hyperosmotic conditions. Importance. Sphingomonas, a genus with versatile functions survives extensively, lauded for its prominent role in plant protection and environmental remediation. Current evidence shows that hyperosmotic stress as a ubiquitous environmental factor, usually threatens the survival of microbes and thus impairs the efficiency of their environmental functions. Thus, it is essential to explore the cellular responses to hyperosmotic stress. Hence, this research will greatly enhance our understanding of the global transcriptional and translational regulation of S. melonis TY in response to hyperosmotic stress, leading to broader perspectives on the impacts of stressful environments.
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Affiliation(s)
- Xiaoyu Wang
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, 310058, China; Cancer Center, Zhejiang University, Hangzhou, 310058, China
| | - Hao Wu
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, 310058, China; Cancer Center, Zhejiang University, Hangzhou, 310058, China
| | - Lvjing Wang
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, 310058, China; Cancer Center, Zhejiang University, Hangzhou, 310058, China
| | - Yihan Wang
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, 310058, China; Cancer Center, Zhejiang University, Hangzhou, 310058, China
| | - Xuejun Wang
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, 310058, China; Cancer Center, Zhejiang University, Hangzhou, 310058, China
| | - Haixia Wang
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, 310058, China.
| | - Zhenmei Lu
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, 310058, China; Cancer Center, Zhejiang University, Hangzhou, 310058, China.
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Yan Y, Bao K, Zhao K, Neupane B, Gao C. A baseline study of polycyclic aromatic hydrocarbons distribution, source and ecological risk in Zhanjiang mangrove wetlands, South China. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 249:114437. [PMID: 38321658 DOI: 10.1016/j.ecoenv.2022.114437] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Revised: 11/28/2022] [Accepted: 12/12/2022] [Indexed: 02/08/2024]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are widespread environmental contaminants and pose a severe threat to human health. Here, 38 surface sediment samples collected from the Gaoqiao mangrove wetland in Zhanjiang, south China, were analyzed to determine 16 Environmental Protection Agency (EPA) priority PAHs. Total PAHs concentrations ranged from 33.5 µg/kg to 404.8 µg/kg with an average of 147.7 ± 77.7 µg/kg, inferring a moderate pollution level. Three and four-ring compounds dominated the PAHs composition patterns. Significant positive correlations were observed between the PAHs and the physicochemical properties of the sediments. According to the characteristic molecular ratio method, PAHs in sediments were mainly derived from combustion sources, including the incomplete combustion of liquid fossil fuels, grass, wood, and coal. The result based on the PMF model indicates that the primary combustion sources of PAHs are coal combustion, diesel-powered vehicles, biomass combustion and gasoline-powered vehicles, with a share of 39.01%, 25.21%, 12.72% and 10.48%, respectively. The petrogenic source contributes 12.58% PAHs to the sediments. The mean effects range median quotient (m-ERM-Q) and toxic equivalent method (TEQ) indicate a low comprehensive ecological risk of PAHs in the study area. Still, the evaluation results of effects range low (ERL) suggest that PAHs in the sediment would occasionally have adverse biological effects. Therefore, this situation demands attention and calls for protection strategies in the processes of urbanization and industrialization in south China.
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Affiliation(s)
- Ying Yan
- School of Geographical Sciences, South China Normal University, Guangzhou 510631, China
| | - Kunshan Bao
- School of Geographical Sciences, South China Normal University, Guangzhou 510631, China.
| | - Kewei Zhao
- School of Geographical Sciences, South China Normal University, Guangzhou 510631, China
| | - Bigyan Neupane
- School of Geographical Sciences, South China Normal University, Guangzhou 510631, China; Institute of Fundamental Research and Studies (InFeRS), Kathmandu 44600, Nepal
| | - Changjun Gao
- Guangdong Provincial Key Laboratory of Silviculture, Protection and Utilization, Guangdong Academy of Forestry, Guangzhou 510520, China
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Mukherji S, Imchen M, Mondal S, Bhattacharyya A, Siddhardha B, Kumavath R, Ghosh A. Anthropogenic impact accelerates antibiotic resistome diversity in the mangrove sediment of Indian Sundarban. CHEMOSPHERE 2022; 309:136806. [PMID: 36220439 DOI: 10.1016/j.chemosphere.2022.136806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2022] [Revised: 10/05/2022] [Accepted: 10/06/2022] [Indexed: 06/16/2023]
Abstract
Mangroves are situated in convergence zones between fresh and marine water and are prone to pollution and deforestation. This study explored the microbiome structure, function and antibiotic resistome of Indian Sundarban. The taxonomic Chao1 estimated diversity was highest in uninhabited Kalash (1204.64 ± 12.72) and lowest in Godkhali, which experiences considerable human activities (1158.76 ± 11.18). The alpha diversity showed negative correlation (p < 0.05) with PAH such as Acenaphthene (r = -0.56), Acenaphthylene (r = -0.62), Fluoranthene (r = -0.59), Fluorene (r = -0.55), Phenanthrene (r = -0.57), while the biochemical parameters phosphate (r = 0.58) and salinity (r = 0.58) had a significant (p < 0.05) positive correlation. The data suggest the importance of physicochemical parameters in maintaining the mangrove microbiome. The taxonomic composition was dominated by Proteobacteria (54.12 ± 0.37). All sites were dominated by ARGs such as rpoB2, cpxR, ompR, camP, and bacA. Comparing the Sundarban mangrove sediment resistome with mangrove from other sites in India (Kerala) and China (Guangxi, Hainan, and Shenzhen) suggested that resistome from Indian mangrove has a significantly (p < 0.05) higher ARG diversity compared to Chinese mangroves. Yet, the abundance of the ARG was significantly (p < 0.05) lower in the Indian mangroves posing a much greater risk if enriched. The study suggests that anthropogenic activities and pollution degrade the microbiome diversity, disturb the microbiome functions, and enrich ARGs.
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Affiliation(s)
- Shayantan Mukherji
- Department of Biochemistry, Bose Institute, EN 80, Sector V, Bidhan Nagar, Kolkata, West Bengal, 700091, India
| | - Madangchanok Imchen
- Department of Microbiology, School of Life Sciences, Pondicherry University, Puducherry, 605014, India
| | - Sangita Mondal
- Department of Biochemistry, Bose Institute, EN 80, Sector V, Bidhan Nagar, Kolkata, West Bengal, 700091, India
| | - Anish Bhattacharyya
- School of Biological Sciences, Division of Genomics and Evolution, University of Manchester, Manchester, M13 9PT, United Kingdom
| | - Busi Siddhardha
- Department of Microbiology, School of Life Sciences, Pondicherry University, Puducherry, 605014, India
| | - Ranjith Kumavath
- Department of Genomic Science, School of Biological Sciences, Central University of Kerala, Tejaswini Hills, Periye P.O., Kasaragod, Kerala, 671316, India; Department of Biotechnology, School of Life Sciences, Pondicherry University, Puducherry, 605014 India.
| | - Abhrajyoti Ghosh
- Department of Biochemistry, Bose Institute, EN 80, Sector V, Bidhan Nagar, Kolkata, West Bengal, 700091, India.
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Robin SL, Marchand C. Polycyclic aromatic hydrocarbons (PAHs) in mangrove ecosystems: A review. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 311:119959. [PMID: 35977644 DOI: 10.1016/j.envpol.2022.119959] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Revised: 07/25/2022] [Accepted: 08/09/2022] [Indexed: 06/15/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are organic pollutants of increasing concern in the different fields of the environment and human health. There are 16 of them that are recognized as priority pollutants by the US environmental protection agency due to their mutagenic and carcinogenic potentials. Due to their hydrophobicity and stability, they are persistent in the environment and can be transported over long distances. Their toxicological effects on multiple species, including humans, as well as their bioaccumulation in the food web became major topics in organic pollutants research this last decade. In the environment, multiple studies have been conducted on their accumulation in the soil and their degradation processes resulting in numerous review papers. However, the dynamics of PAHs in mangrove ecosystems is not yet completely understood. In this review paper, an exhaustive presentation of what is known about PAHs and their transfer, accumulation, and degradation in mangrove ecosystems is offered. This article brings to light the knowledge already acquired on the subject and the perspective research necessary to fully comprehend PAHs dynamics in mangrove ecosystems.
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Affiliation(s)
- Sarah Louise Robin
- Institut de Sciences Exactes et Appliquées (ISEA EA7484), Université de la Nouvelle-Calédonie, 145 Avenue James Cook, Nouville, BP R4 98851, Nouméa Cedex, New Caledonia.
| | - Cyril Marchand
- Institut de Sciences Exactes et Appliquées (ISEA EA7484), Université de la Nouvelle-Calédonie, 145 Avenue James Cook, Nouville, BP R4 98851, Nouméa Cedex, New Caledonia
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Antony S, Antony S, Rebello S, George S, Biju DT, R R, Madhavan A, Binod P, Pandey A, Sindhu R, Awasthi MK. Bioremediation of Endocrine Disrupting Chemicals- Advancements and Challenges. ENVIRONMENTAL RESEARCH 2022; 213:113509. [PMID: 35660566 DOI: 10.1016/j.envres.2022.113509] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2022] [Revised: 05/08/2022] [Accepted: 05/18/2022] [Indexed: 06/15/2023]
Abstract
Endocrine Disrupting Chemicals (EDCs), major group of recalcitrant compounds, poses a serious threat to the health and future of millions of human beings, and other flora and fauna for years to come. A close analysis of various xenobiotics undermines the fact that EDC is structurally diverse chemical compounds generated as a part of anthropogenic advancements as well as part of their degradation. Regardless of such structural diversity, EDC is common in their ultimate drastic effect of impeding the proper functioning of the endocrinal system, basic physiologic systems, resulting in deregulated growth, malformations, and cancerous outcomes in animals as well as humans. The current review outlines an overview of various EDCs, their toxic effects on the ecosystem and its inhabitants. Conventional remediation methods such as physico-chemical methods and enzymatic approaches have been put into action as some form of mitigation measures. However, the last decade has seen the hunt for newer technologies and methodologies at an accelerated pace. Genetically engineered microbial degradation, gene editing strategies, metabolic and protein engineering, and in-silico predictive approaches - modern day's additions to our armamentarium in combating the EDCs are addressed. These additions have greater acceptance socially with lesser dissonance owing to reduced toxic by-products, lower health trepidations, better degradation, and ultimately the prevention of bioaccumulation. The positive impact of such new approaches on controlling the menace of EDCs has been outlaid. This review will shed light on sources of EDCs, their impact, significance, and the different remediation and bioremediation approaches, with a special emphasis on the recent trends and perspectives in using sustainable approaches for bioremediation of EDCs. Strict regulations to prevent the release of estrogenic chemicals to the ecosystem, adoption of combinatorial methods to remove EDC and prevalent use of bioremediation techniques should be followed in all future endeavors to combat EDC pollution. Moreover, the proper development, growth and functioning of future living forms relies on their non-exposure to EDCs, thus remediation of such chemicals present even in nano-concentrations should be addressed gravely.
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Affiliation(s)
- Sherly Antony
- Department of Microbiology, Pushpagiri Institute of Medical Sciences and Research Centre, Thiruvalla, 689 101, Kerala, India
| | - Sham Antony
- Pushpagiri Research Centre, Pushpagiri Institute of Medical Sciences and Research Centre, Thriuvalla, 689 101, Kerala, India
| | - Sharrel Rebello
- School of Food Science & Technology, Mahatma Gandhi University, Kottayam, India
| | - Sandhra George
- Pushpagiri Research Centre, Pushpagiri Institute of Medical Sciences and Research Centre, Thriuvalla, 689 101, Kerala, India
| | - Devika T Biju
- Pushpagiri Research Centre, Pushpagiri Institute of Medical Sciences and Research Centre, Thriuvalla, 689 101, Kerala, India
| | - Reshmy R
- Department of Science and Humanities, Providence College of Engineering, Chengannur, 689 122, Kerala, India
| | - Aravind Madhavan
- Rajiv Gandhi Centre for Biotechnology, Jagathy, Trivandrum, 695 014, India
| | - Parameswaran Binod
- Microbial Processes and Technology Division, CSIR-National Institute for Interdisciplinary Science and Technology (CSIR-NIIST), Thiruvananthapuram, 695 019, Kerala, India
| | - Ashok Pandey
- Center for Innovation and Translational Research, CSIR-Indian Institute of Toxicology Research, Lucknow, 226 001, India; Centre for Energy and Environmental Sustainability, Lucknow, 226 029, Uttar Pradesh, India
| | - Raveendran Sindhu
- Department of Food Technology, T K M Institute of Technology, Kollam, 691 505, Kerala, India.
| | - Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province, 712100, China.
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Liu J, Zhou X, Wang T, Fan L, Liu S, Wu N, Xu A, Qian X, Li Z, Jiang M, Zhou J, Dong W. Construction and comparison of synthetic microbial consortium system (SMCs) by non-living or living materials immobilization and application in acetochlor degradation. JOURNAL OF HAZARDOUS MATERIALS 2022; 438:129460. [PMID: 35803189 DOI: 10.1016/j.jhazmat.2022.129460] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 06/22/2022] [Accepted: 06/23/2022] [Indexed: 06/15/2023]
Abstract
The microbial degradation of pesticides by pure or mixed microbial cultures has been thoroughly explored, however, they are still difficult to apply in real environmental remediation. Here, we constructed a synthetic microbial consortium system (SMCs) through the immobilization technology by non-living or living materials to improve the acetochlor degradation efficiency. Rhodococcus sp. T3-1, Delftia sp. T3-6 and Sphingobium sp. MEA3-1 were isolated for the SMCs construction. The free-floating consortium with the composition ratio of 1:2:2 (Rhodococcus sp. T3-1, Delftia sp. T3-6 and Sphingobium sp. MEA3-1) demonstrated 94.8% degradation of acetochlor, and the accumulation of intermediate metabolite 2-methyl-6-ethylaniline was decreased by 3 times. The immobilized consortium using composite materials showed synergistic effects on the acetochlor degradation with maximum degradation efficiency of 97.81%. In addition, a novel immobilization method with the biofilm of Myxococcus xanthus DK1622 as living materials was proposed. The maximum 96.62% degradation was obtained in non-trophic media. Furthermore, the immobilized SMCs showed significantly enhanced environmental robustness, reusability and stability. The results indicate the promising application of the immobilization methods using composite and living materials in pollutant-contaminated environments.
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Affiliation(s)
- Jingyuan Liu
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, PR China
| | - Xiaoli Zhou
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, PR China
| | - Tong Wang
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, PR China
| | - Lingling Fan
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, PR China
| | - Shixun Liu
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, PR China
| | - Nan Wu
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, PR China
| | - Anming Xu
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, PR China
| | - Xiujuan Qian
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, PR China
| | - Zhoukun Li
- Key Laboratory of Agriculture Environmental Microbiology, College of Life Science, Nanjing Agriculture University, Nanjing 210095, PR China
| | - Min Jiang
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, PR China; State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing 211800, PR China
| | - Jie Zhou
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, PR China.
| | - Weiliang Dong
- State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing 211800, PR China.
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Balu S, Bhunia S, Gachhui R, Mukherjee J. Polycyclic aromatic hydrocarbon sequestration by intertidal phototrophic biofilms cultivated in hydrophobic and hydrophilic biofilm-promoting culture vessels. JOURNAL OF HAZARDOUS MATERIALS 2022; 437:129318. [PMID: 35749894 DOI: 10.1016/j.jhazmat.2022.129318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2022] [Revised: 05/24/2022] [Accepted: 06/05/2022] [Indexed: 06/15/2023]
Abstract
Phototrophic biofilms collected from intertidal sediments of the world's largest tidal mangrove forest were cultured in two sets of a biofilm-promoting culture vessel having hydrophilic glass surface and hydrophobic polymethyl methacrylate surface wherein 16 priority polycyclic aromatic hydrocarbons (PAHs) were spiked. Biofilms from three locations of the forest were most active in sequestering 98-100% of the spiked pollutants. PAH challenge did not alter the biofilm phototrophic community composition; rather biofilm biomass production and synthesis of photosynthetic pigments and extracellular polymeric substances (EPS) were enhanced. Photosynthetic pigment and EPS synthesis were sensitive to vessel-surface property. The lowest mean residual amounts of PAHs in the liquid medium as well as inside the biofilm were recorded in the very biofilm cultivated in the hydrophobic flask where highest values of biofilm biomass, total chlorophyll, released polysaccharidic (RPS) carbohydrates, RPS uronic acids, capsular polysaccharidic (CPS) carbohydrates, CPS proteins, CPS uronic acids and EPS hydrophobicity were obtained. Ratios of released RPS proteins: polysaccharides increased during PAH sequestration whereas the ratios of CPS proteins: polysaccharides remained constant. Efficacious PAH removal by the overlying phototrophic biofilm will reduce the entry of these contaminants in the sediments underneath and this strategy could be a model for "monitored natural recovery".
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Affiliation(s)
- Saranya Balu
- School of Environmental Studies, Jadavpur University, Kolkata 700032, India.
| | - Shantanu Bhunia
- School of Environmental Studies, Jadavpur University, Kolkata 700032, India.
| | - Ratan Gachhui
- Department of Life Science and Biotechnology, Jadavpur University, Kolkata 700032, India.
| | - Joydeep Mukherjee
- School of Environmental Studies, Jadavpur University, Kolkata 700032, India.
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Palit K, Rath S, Chatterjee S, Das S. Microbial diversity and ecological interactions of microorganisms in the mangrove ecosystem: Threats, vulnerability, and adaptations. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:32467-32512. [PMID: 35182344 DOI: 10.1007/s11356-022-19048-7] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2021] [Accepted: 01/31/2022] [Indexed: 06/14/2023]
Abstract
Mangroves are among the world's most productive ecosystems and a part of the "blue carbon" sink. They act as a connection between the terrestrial and marine ecosystems, providing habitat to countless organisms. Among these, microorganisms (e.g., bacteria, archaea, fungi, phytoplankton, and protozoa) play a crucial role in this ecosystem. Microbial cycling of major nutrients (carbon, nitrogen, phosphorus, and sulfur) helps maintain the high productivity of this ecosystem. However, mangrove ecosystems are being disturbed by the increasing concentration of greenhouse gases within the atmosphere. Both the anthropogenic and natural factors contribute to the upsurge of greenhouse gas concentration, resulting in global warming. Changing climate due to global warming and the increasing rate of human interferences such as pollution and deforestation are significant concerns for the mangrove ecosystem. Mangroves are susceptible to such environmental perturbations. Global warming, human interventions, and its consequences are destroying the ecosystem, and the dreadful impacts are experienced worldwide. Therefore, the conservation of mangrove ecosystems is necessary for protecting them from the changing environment-a step toward preserving the globe for better living. This review highlights the importance of mangroves and their microbial components on a global scale and the degree of vulnerability of the ecosystems toward anthropic and climate change factors. The future scenario of the mangrove ecosystem and the resilience of plants and microbes have also been discussed.
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Affiliation(s)
- Krishna Palit
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769008, Odisha, India
| | - Sonalin Rath
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769008, Odisha, India
| | - Shreosi Chatterjee
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769008, Odisha, India
| | - Surajit Das
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769008, Odisha, India.
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Diversity and Potential Function of Prokaryotic and Eukaryotic Communities from Different Mangrove Sediments. SUSTAINABILITY 2022. [DOI: 10.3390/su14063333] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Mangrove trees generally play important roles in protecting intertidal ecosystems. The mangrove root-associated sediments provide a repertoire of microbial communities that contribute to pivotal ecological functions in the system. In the present study, we used the high-throughput sequencing and PICRUSt-predicted functional information (based on 16S/18S rDNA profiles) to investigate the bacterial, archaeal, and fungal communities in two mangrove systems, located in the estuary of the Jiulong River (China), with different contaminated conditions and frequencies of human activity. Diverse distribution patterns for microbial communities were observed in six sediment samples collected from the two survey areas, which were found to be related mainly to the substrates in mangrove sediments. The sediments were predominated by relatively higher ratios of heterotrophic bacteria that participated in the degradation of organic matters, including phylum of Chloroflexi, Acidobacteriota, Desulfobacterota, and Proteobacteria. In addition, Crenarchaeota and Ascomycota presented the highest abundances of archaea and fungi, respectively. The relatively high concentrations of calcium, nitrogen, magnesium, and phosphorus in mangrove sediments correlated significantly with the microbial communities. In addition, although the potential functions were similar in the two sites based on COG and KEGG pathways, the abundances of enzymes involved in the degradation processes of cellulose and hemicellulose and the metabolism of nitrogen and sulfur presented distinctions. These results provide insights into the environmental conditions shaping microbial assemblies of the mangrove sediments under the impacts of human activities; for instance, a more abundant amount of calcium was found in urban areas in this study.
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Freitas PNN, Rovida AFDS, Silva CR, Pileggi SAV, Olchanheski LR, Pileggi M. Specific quorum sensing molecules are possibly associated with responses to herbicide toxicity in a Pseudomonas strain. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 289:117896. [PMID: 34358867 DOI: 10.1016/j.envpol.2021.117896] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Revised: 07/25/2021] [Accepted: 08/01/2021] [Indexed: 06/13/2023]
Abstract
Pesticides contribute to pest control and increase agricultural production; however, they are toxic to non-target organisms, and they contaminate the environment. The exposure of bacteria to these substances can lead to the need for physiological and structural changes for survival, which can be determined by genes whose expression is regulated by quorum sensing (QS). However, it is not yet clear whether these processes can be induced by herbicides. Thus, the aim of this work was to determine whether there is a QS response system in the Pseudomonas fluorescens CMA55 strain that is modulated by herbicides. This strain was isolated from water storage tanks used for washing pesticide packaging and was tested against herbicides containing saflufenacil, glyphosate, sulfentrazone, 2,4-D, and dicamba as active molecules. Our results showed that in the presence of herbicides containing saflufenacil and glyphosate (the latter was not present at the bacterial isolation site) the strain had a profile of QS signaling molecules that may be involved in controlling the production of reactive oxygen species. Alternatively, the same strain, in the presence of sulfentrazone (it was not present at the bacterial isolation site), 2,4-D and dicamba-containing herbicides, presented another profile of molecules that may be involved in different stages of biofilm formation. These findings, as a first screening, suggest that this strain used strategies to activate antioxidant enzymes and biofilm production under the signaling of QS molecules to respond to herbicides, regardless of previous contact, representing a model of phenotypic plasticity for adaptation to agricultural environments that can be used in studies of herbicide bioremediation.
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Affiliation(s)
- Paloma Nathane Nunes Freitas
- Laboratory of Environmental Microbiology, Biological and Health Sciences Sector, Department of Structural and Molecular Biology and Genetics, Ponta Grossa State University, Ponta Grossa, Paraná, Brazil
| | | | - Caroline Rosa Silva
- Laboratory of Environmental Microbiology, Biological and Health Sciences Sector, Department of Structural and Molecular Biology and Genetics, Ponta Grossa State University, Ponta Grossa, Paraná, Brazil
| | - Sônia Alvim Veiga Pileggi
- Laboratory of Environmental Microbiology, Biological and Health Sciences Sector, Department of Structural and Molecular Biology and Genetics, Ponta Grossa State University, Ponta Grossa, Paraná, Brazil
| | - Luiz Ricardo Olchanheski
- Laboratory of Environmental Microbiology, Biological and Health Sciences Sector, Department of Structural and Molecular Biology and Genetics, Ponta Grossa State University, Ponta Grossa, Paraná, Brazil
| | - Marcos Pileggi
- Laboratory of Environmental Microbiology, Biological and Health Sciences Sector, Department of Structural and Molecular Biology and Genetics, Ponta Grossa State University, Ponta Grossa, Paraná, Brazil.
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Considerations on the Identity and Diversity of Organisms Affiliated with Sphingobacterium multivorum-Proposal for a New Species, Sphingobacterium paramultivorum. Microorganisms 2021; 9:microorganisms9102057. [PMID: 34683378 PMCID: PMC8540502 DOI: 10.3390/microorganisms9102057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 09/21/2021] [Accepted: 09/24/2021] [Indexed: 11/16/2022] Open
Abstract
Plant biomass offers great potential as a sustainable resource, and microbial consortia are primordial in its bioconversion. The wheat-straw-biodegradative bacterial strain w15 has drawn much attention as a result of its biodegradative potential and superior degradation performance in bacterial-fungal consortia. Strain w15 was originally assigned to the species Sphingobacterium multivorum based on its 16S ribosomal RNA (rRNA) gene sequence. A closer examination of this taxonomic placement revealed that the sequence used has 98.9% identity with the ‘divergent’ 16S rRNA gene sequence of S. multivorum NCTC 11343T, yet lower relatedness with the canonical 16S rRNA sequence. A specific region of the gene, located between positions 186 and 210, was found to be highly variable and determinative for the divergence. To solve the identity of strain w15, genome metrics and analyses of ecophysiological niches were undertaken on a selection of strains assigned to S. multivorum and related species. These analyses separated all strains into three clusters, with strain w15, together with strain BIGb0170, constituting a separate radiation, next to S. multivorum and S. siyangense. Moreover, the strains denoted FDAARGOS 1141 and 1142 were placed inside S. siyangense. We propose the renaming of strains w15 and BIGb0170 as members of the novel species, coined Sphingobacterium paramultivorum.
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Mandal A, Dutta A, Das R, Mukherjee J. Role of intertidal microbial communities in carbon dioxide sequestration and pollutant removal: A review. MARINE POLLUTION BULLETIN 2021; 170:112626. [PMID: 34153859 DOI: 10.1016/j.marpolbul.2021.112626] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2020] [Revised: 06/06/2021] [Accepted: 06/08/2021] [Indexed: 05/16/2023]
Abstract
Intertidal microbial communities occur as biofilms or microphytobenthos (MPB) which are sediment-attached assemblages of bacteria, protozoa, fungi, algae, diatoms embedded in extracellular polymeric substances. Despite their global occurrence, they have not been reviewed in light of their structural and functional characteristics. This paper reviews the importance of such microbial communities and their importance in carbon dioxide sequestration as well as pollutant bioremediation. Global annual benthic microalgal productivity was 500 million tons of carbon, 50% of which contributed towards the autochthonous carbon fixation in the estuaries. Primary production by MPB was 27-234 gCm-2y-1 in the estuaries of Asia, Europe and the United States. Mechanisms of heavy metal removal remain to be tested in intertidal communities. Cyanobacteria facilitate hydrocarbon degradation in intertidal biofilms and microbial mats by supporting the associated sulfate-reducing bacteria and aerobic heterotrophs. Physiological cooperation between the microorganisms in intertidal communities imparts enhanced ability to utilize polycyclic aromatic hydrocarbon pollutants by these microorganisms than mono-species communities. Future research may be focused on biochemical characteristics of intertidal mats and biofilms, pollutant-microbial interactions and ecosystem influences.
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Affiliation(s)
- Abhishek Mandal
- School of Environmental Studies, Jadavpur University, 700032, India
| | - Ahana Dutta
- School of Environmental Studies, Jadavpur University, 700032, India
| | - Reshmi Das
- School of Environmental Studies, Jadavpur University, 700032, India.
| | - Joydeep Mukherjee
- School of Environmental Studies, Jadavpur University, 700032, India.
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