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Pan KY, Liu HH, Tseng MN, Chang HX. Ca 2+ affects the hyphal differentiation to sclerotia formation of Athelia rolfsii. Microbiol Spectr 2024; 12:e0020024. [PMID: 38687071 DOI: 10.1128/spectrum.00200-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Accepted: 04/05/2024] [Indexed: 05/02/2024] Open
Abstract
RNA-Sequencing (RNA-Seq) and transcriptomic analyses have become powerful tools to study the developmental stages of fungal structures scuh as sclerotia. While RNA-Seq experiments have been set up for many important sclerotia- and microsclerotia-forming fungi, it has not been implemented to study Athelia rolfsii, which is one of the earliest fungi used in literature to uncover the roles of reactive oxygen species (ROS) in stimulating sclerotia formation. This study applied RNA-Seq to profile gene expression in four developmental stages of A. rolfsii sclerotia. Surprisingly, gene ontology and expression patterns suggested that most ROS-scavenging genes were not up-regulated in the stages from hyphal differentiation to the initial sclerotia stage. Using antioxidant and oxidant-amended culture assay, the results suggested none of the ascorbic acid, dithiothreitol (DTT), H2O2, or superoxide dismutase inhibitors [diethyldithiocarbamate (DETC), NaN3, and sodium dodecyl sulfate] affected the sclerotia number. Instead, only glutathione reduced the sclerotia number. Because glutathione has also been suggested to facilitate Ca2+ influx, therefore, glutathione culture assays with the combination of CaCl2, Ca2+-chelator egtazic acid, DETC, and H2O2 were tested on A. rolfsii, as well as two other fungi (Sclerotinia sclerotiorum and Macrophomina phaseolina) for comparison. Although the addition of CaCl2 caused sclerotia or microsclerotia reduction for all three fungi, the CaCl2-ROS interaction was only observed for S. sclerotiorum and M. phaseolina, but not A. rolfsi. Collectively, this study not only pointed out a conserved function of Ca2+ in suppressing fungal sclerotia and microsclerotia formation but also highlighted sclerotia formation of A. rolfsii being only sensitive to Ca2+ and independent of ROS stimuli.IMPORTANCEManagement for plant diseases caused by soil-borne fungal pathogens is challenging because many soil-borne fungal pathogens form sclerotia for long-term survival. Advanced understanding of the molecular and cellular mechanisms of sclerotia formation may provide novel insights to prevent these fungal residues in fields. This study discovered that Ca2+ acts as a negative signal cue to suppress sclerotia and microsclerotia formation in three economically important fungal pathogens. Moreover, the southern blight fungus Athelia rolfsii appears to be only regulated by Ca2+ but not reactive oxygen species. Accordingly, A. rolfsii can be a useful system for studying the detailed mechanism of Ca2+, and the applicability of Ca2+ in reducing sclerotia could be further assessed for disease management.
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Affiliation(s)
- Kuan-Yu Pan
- Department of Plant Pathology and Microbiology, National Taiwan University, Taipei City, Taiwan
| | - Hsien-Hao Liu
- Department of Plant Pathology and Microbiology, National Taiwan University, Taipei City, Taiwan
| | - Min-Nan Tseng
- Kaohsiung District Agricultural Research and Extension Station, Ministry of Agriculture, Pingtung, Taiwan
| | - Hao-Xun Chang
- Department of Plant Pathology and Microbiology, National Taiwan University, Taipei City, Taiwan
- Master Program for Plant Medicine, National Taiwan University, Taipei City, Taiwan
- Center for Biotechnology, National Taiwan University, Taipei City, Taiwan
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Yin C, Larson M, Lahr N, Paulitz T. Wheat Rhizosphere-Derived Bacteria Protect Soybean from Soilborne Diseases. PLANT DISEASE 2024; 108:1565-1576. [PMID: 38105448 DOI: 10.1094/pdis-08-23-1713-re] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2023]
Abstract
Soybean (Glycine max [L.] Merr.) is an important oilseed crop with a high economic value. However, three damaging soybean diseases, soybean cyst nematode (SCN; Heterodera glycines Ichinohe), Sclerotinia stem rot caused by the fungus Sclerotinia sclerotiorum (Lid.) de Bary, and soybean root rot caused by Fusarium spp., are major constraints to soybean production in the Great Plains. Current disease management options, including resistant or tolerant varieties, fungicides, nematicides, and agricultural practices (crop rotation and tillage), have limited efficacy for these pathogens or have adverse effects on the ecosystem. Microbes with antagonistic activity are a promising option to control soybean diseases with the advantage of being environmentally friendly and sustainable. In this study, 61 bacterial strains isolated from wheat rhizospheres were used to examine their antagonistic abilities against three soybean pathogens. Six bacterial strains significantly inhibited the growth of Fusarium graminearum in the dual-culture assay. These bacterial strains were identified as Chryseobacterium ginsengisoli, C. indologenes, Pseudomonas poae, two Pseudomonas spp., and Delftia acidovorans by 16S rRNA gene sequencing. Moreover, C. ginsengisoli, C. indologenes, and P. poae significantly increased the mortality of SCN second-stage juveniles (J2), and two Pseudomonas spp. inhibited the growth of S. sclerotiorum in vitro. Further growth chamber tests found that C. ginsengisoli and C. indologenes reduced soybean Fusarium root rot disease. C. ginsengisoli and P. poae dramatically decreased SCN egg number on SCN-susceptible soybean 'Williams 82'. Two Pseudomonas spp. protected soybean plants from leaf damage and collapse after being infected by S. sclerotiorum. These bacteria exhibit versatile antagonistic potential. This work lays the foundation for further research on the field control of soybean pathogens.
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Affiliation(s)
- Chuntao Yin
- North Central Agricultural Research Laboratory, USDA-ARS, Brookings, SD
| | - Matt Larson
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD
| | - Nathan Lahr
- North Central Agricultural Research Laboratory, USDA-ARS, Brookings, SD
| | - Timothy Paulitz
- Wheat Health, Genetics, and Quality Research Unit, USDA-ARS, Pullman, WA
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Wang G, Zhao H, Zou J, Liang W, Zhao Z, Li D. Role of BcSfb3, the subunit of COPII vesicles, in fungal development and pathogenicity, ER-phagy and autophagy in the gray mold fungus Botrytis cinerea. Int J Biol Macromol 2024; 263:130379. [PMID: 38403214 DOI: 10.1016/j.ijbiomac.2024.130379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Revised: 02/19/2024] [Accepted: 02/20/2024] [Indexed: 02/27/2024]
Abstract
Cytoplasmic coat protein complex II (COPII) plays a multifunctional role in the transport of newly synthesized proteins, autophagosome formation, and endoplasmic reticulum (ER)-ER-phagy. However, the molecular mechanisms of the COPII subunit in ER-phagy in plant pathogens remain unknown. Here, we identified the subunit of COPII vesicles (BcSfb3) and explored the importance of BcSfb3 in Botrytis cinerea. BcSfb3 deletion affected vegetative growth, conidiation, conidial morphology, and plasma membrane integrity. We confirmed that the increase in infectious hyphal growth was delayed in the ΔBcSfb3 mutant, reducing its pathogenicity in the host plant. Furthermore, the ΔBcSfb3 mutant was sensitive to ER stress, which caused massive ER expansion and induced the formation of ER whorls that were taken up into the vacuole. Further examination demonstrated that BcSfb3 deletion caused ER stress initiated by unfolded protein response, and which led to the promotion of ER-phagy and autophagy that participate in sclerotia formation. In conclusion, these results demonstrate that BcSfb3 plays an important role in fungal development, pathogenesis, ER-phagy and autophagy in B. cinerea.
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Affiliation(s)
- Guanbo Wang
- College of Plant Health and Medicine, Engineering Research Center for Precision Pest Management for Fruits and Vegetables of Qingdao, China
| | - Haonan Zhao
- College of Plant Health and Medicine, Engineering Research Center for Precision Pest Management for Fruits and Vegetables of Qingdao, China
| | - Jian Zou
- College of Plant Health and Medicine, Engineering Research Center for Precision Pest Management for Fruits and Vegetables of Qingdao, China
| | - Wenxing Liang
- College of Plant Health and Medicine, Engineering Research Center for Precision Pest Management for Fruits and Vegetables of Qingdao, China
| | - Zhijian Zhao
- Industrial Crops Institute, Yunnan Academy of Agricultural Sciences, Kunming 650203, China.
| | - Delong Li
- College of Plant Health and Medicine, Engineering Research Center for Precision Pest Management for Fruits and Vegetables of Qingdao, China; Shandong Engineering Research Center for Environment-Friendly Agricultural Pest Management, Shandong Province Key Laboratory of Applied Mycology, Qingdao Agricultural University, Qingdao 266109, China.
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Gadd GM, Fomina M, Pinzari F. Fungal biodeterioration and preservation of cultural heritage, artwork, and historical artifacts: extremophily and adaptation. Microbiol Mol Biol Rev 2024; 88:e0020022. [PMID: 38179930 PMCID: PMC10966957 DOI: 10.1128/mmbr.00200-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 09/11/2023] [Indexed: 01/06/2024] Open
Abstract
SUMMARYFungi are ubiquitous and important biosphere inhabitants, and their abilities to decompose, degrade, and otherwise transform a massive range of organic and inorganic substances, including plant organic matter, rocks, and minerals, underpin their major significance as biodeteriogens in the built environment and of cultural heritage. Fungi are often the most obvious agents of cultural heritage biodeterioration with effects ranging from discoloration, staining, and biofouling to destruction of building components, historical artifacts, and artwork. Sporulation, morphological adaptations, and the explorative penetrative lifestyle of filamentous fungi enable efficient dispersal and colonization of solid substrates, while many species are able to withstand environmental stress factors such as desiccation, ultra-violet radiation, salinity, and potentially toxic organic and inorganic substances. Many can grow under nutrient-limited conditions, and many produce resistant cell forms that can survive through long periods of adverse conditions. The fungal lifestyle and chemoorganotrophic metabolism therefore enable adaptation and success in the frequently encountered extremophilic conditions that are associated with indoor and outdoor cultural heritage. Apart from free-living fungi, lichens are a fungal growth form and ubiquitous pioneer colonizers and biodeteriogens of outdoor materials, especially stone- and mineral-based building components. This article surveys the roles and significance of fungi in the biodeterioration of cultural heritage, with reference to the mechanisms involved and in relation to the range of substances encountered, as well as the methods by which fungal biodeterioration can be assessed and combated, and how certain fungal processes may be utilized in bioprotection.
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Affiliation(s)
- Geoffrey Michael Gadd
- Geomicrobiology Group, School of Life Sciences, University of Dundee, Dundee, United Kingdom
- State Key Laboratory of Heavy Oil Processing, Beijing Key Laboratory of Oil and Gas Pollution Control, College of Chemical Engineering and Environment, China University of Petroleum, Beijing, China
| | - Marina Fomina
- Zabolotny Institute of Microbiology and Virology, National Academy of Sciences of Ukraine, Kyiv, Ukraine
- National Reserve “Sophia of Kyiv”, Kyiv, Ukraine
| | - Flavia Pinzari
- Institute for Biological Systems (ISB), Council of National Research of Italy (CNR), Monterotondo (RM), Italy
- Natural History Museum, London, United Kingdom
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Trofymow JA, Shay PE, Tomm B, Bérubé JA, Ramsfield T. Differences in Soil Fungal Communities between Forested Reclamation and Forestry Sites in the Alberta Oil Sands Region. J Fungi (Basel) 2023; 9:1110. [PMID: 37998915 PMCID: PMC10672713 DOI: 10.3390/jof9111110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 10/30/2023] [Accepted: 11/09/2023] [Indexed: 11/25/2023] Open
Abstract
Fungi play key roles in forest soils and provide benefits to trees via mycorrhizal symbioses. After severe disturbance, forest regrowth can be impeded because of changes in fungal communities. In 2013-2014, soil fungi in forest floor and mineral soil were examined by Roche 454 pyrosequencing in undisturbed, harvested, and burned jack pine stands in a forested area near Fort Chipewyan, Alberta. These fungal communities were compared with jack pine, white spruce, and larch stands in Gateway Hill, a nearby certified reclaimed area. In 2014, a more detailed sampling of forestry and reclamation jack pine sites examined fungi in soil fractions using two high-throughput sequencing platforms and a sporocarp survey. The significances of compositional and functional differences in fungal communities between the forested and reclamation sites were assessed using permutation tests of partially constrained ordinations, accounting for confounding factors by variance partitioning. Taxa associated with the forestry area were primarily ectomycorrhizal. Fungal richness and diversity were greater in soils from the reclamation sites and included significantly more pathogenic taxa and taxa with unknown functional properties. Fungal community dissimilarities may have been artefacts of historical legacies or, alternatively, may have resulted from contrasting niche differentiation between forestry and reclamation sites.
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Affiliation(s)
- John. A. Trofymow
- Pacific Forestry Centre, Canadian Forest Service, Natural Resources Canada, 506 West Burnside Road, Victoria, BC V8Z 1M5, Canada
- Department of Biology, University of Victoria, 3800 Finnerty Road, Victoria, BC V8P 5C2, Canada
| | - Philip-Edouard Shay
- Pacific Forestry Centre, Canadian Forest Service, Natural Resources Canada, 506 West Burnside Road, Victoria, BC V8Z 1M5, Canada
- Canadian Wood Fibre Centre, Canadian Forest Service, 1350 Regent Street, Fredericton, NB E3B 5P7, Canada;
| | - Bradley Tomm
- Northern Forestry Centre, Canadian Forest Service, Natural Resources Canada, 5320-122nd Street, Edmonton, AB T6H 3S5, Canada; (B.T.); (T.R.)
| | - Jean A. Bérubé
- Laurentian Forestry Centre, Canadian Forest Service, Natural Resources Canada, 1055 Rue du Peps, Québec, QC G1V 4C7, Canada;
| | - Tod Ramsfield
- Northern Forestry Centre, Canadian Forest Service, Natural Resources Canada, 5320-122nd Street, Edmonton, AB T6H 3S5, Canada; (B.T.); (T.R.)
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Sun X, Liu D, Zhao X. Transcription factors: switches for regulating growth and development in macrofungi. Appl Microbiol Biotechnol 2023; 107:6179-6191. [PMID: 37624406 DOI: 10.1007/s00253-023-12726-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 07/31/2023] [Accepted: 08/09/2023] [Indexed: 08/26/2023]
Abstract
Macrofungi (or mushrooms) act as an extraordinarily important part to human health due to their nutritional and/or medicinal value, but the detailed researches in growth and development mechanisms have yet to be explored further. Transcription factors (TFs) play indispensable roles in signal transduction and affect growth, development, and metabolism of macrofungi. In recent years, increasing research effort has been employed to probe the relationship between the development of macrofungi and TFs. Herein, the present review comprehensively summarized the functional TFs researched in macrofungi, including modulating mycelial growth, fructification, sclerotial formation, sexual reproduction, spore formation, and secondary metabolism. Meanwhile, the possible effect mechanisms of TFs on the growth and development of some macrofungi were also revealed. Specific examples of functional characterizations of TFs in macrofungi (such as Schizophyllum commune and Coprinopsis cinerea) were described to a better comprehension of regulatory effect. Future research prospects in the field of TFs of macrofungi are discussed. We illustrated the functional versatility of the TFs in macrofungi based on specific examples. A systematical realization of the interaction and possible mechanisms between TFs and macrofungi can supply possible solutions to regulate genetic characteristics, which supply novel insights into the regulation of growth, development and metabolism of macrofungi. KEY POINTS: • The functional TFs researched in macrofungi were summarized. • The possible effect mechanisms of TFs in macrofungal were described. • The multiple physiological functions of TFs in macrofungi were discussed.
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Affiliation(s)
- Xueyan Sun
- Research Center for Environmental Ecology and Engineering, Key Laboratory for Green Chemical Process of Ministry of Education, Hubei Key Laboratory of Novel Reactor and Green Chemistry Technology, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan, 430205, China
| | - Dongmei Liu
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, 210014, China
| | - Xihong Zhao
- Research Center for Environmental Ecology and Engineering, Key Laboratory for Green Chemical Process of Ministry of Education, Hubei Key Laboratory of Novel Reactor and Green Chemistry Technology, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan, 430205, China.
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7
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Djami-Tchatchou AT, Tetorya M, Godwin J, Codjoe JM, Li H, Shah DM. Small Cationic Cysteine-Rich Defensin-Derived Antifungal Peptide Controls White Mold in Soybean. J Fungi (Basel) 2023; 9:873. [PMID: 37754982 PMCID: PMC10532163 DOI: 10.3390/jof9090873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 08/11/2023] [Accepted: 08/22/2023] [Indexed: 09/28/2023] Open
Abstract
White mold disease caused by a necrotrophic ascomycete pathogen Sclerotinia sclerotiorum results in serious economic losses of soybean yield in the USA. Lack of effective genetic resistance to this disease in soybean germplasm and increasing pathogen resistance to fungicides makes white mold difficult to manage. Small cysteine-rich antifungal peptides with multi-faceted modes of action possess potential for development as sustainable spray-on bio-fungicides. We have previously reported that GMA4CG_V6 peptide, a 17-amino acid variant of the MtDef4 defensin-derived peptide GMA4CG containing the active γ-core motif, exhibits potent antifungal activity against the gray mold fungal pathogen Botrytis cinerea in vitro and in planta. GMA4CG_V6 exhibited antifungal activity against an aggressive field isolate of S. sclerotiorum 555 in vitro with an MIC value of 24 µM. At this concentration, internalization of this peptide into fungal cells occurred prior to discernible membrane permeabilization. GMA4CG_V6 markedly reduced white mold disease symptoms when applied to detached soybean leaves, pods, and stems. Its spray application on soybean plants provided robust control of this disease. GMA4CG_V6 at sub-lethal concentrations reduced sclerotia production. It was also non-phytotoxic to soybean plants. Our results demonstrate that GMA4CG_V6 peptide has potential for development as a bio-fungicide for white mold control in soybean.
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Affiliation(s)
| | | | | | | | | | - Dilip M. Shah
- Donald Danforth Plant Science Center, St. Louis, MO 63132, USA; (A.T.D.-T.); (M.T.); (J.G.); (J.M.C.); (H.L.)
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Meyer M, Slot J. The evolution and ecology of psilocybin in nature. Fungal Genet Biol 2023; 167:103812. [PMID: 37210028 DOI: 10.1016/j.fgb.2023.103812] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Revised: 04/19/2023] [Accepted: 05/12/2023] [Indexed: 05/22/2023]
Abstract
Fungi produce diverse metabolites that can have antimicrobial, antifungal, antifeedant, or psychoactive properties. Among these metabolites are the tryptamine-derived compounds psilocybin, its precursors, and natural derivatives (collectively referred to as psiloids), which have played significant roles in human society and culture. The high allocation of nitrogen to psiloids in mushrooms, along with evidence of convergent evolution and horizontal transfer of psilocybin genes, suggest they provide a selective benefit to some fungi. However, no precise ecological roles of psilocybin have been experimentally determined. The structural and functional similarities of psiloids to serotonin, an essential neurotransmitter in animals, suggest that they may enhance the fitness of fungi through interference with serotonergic processes. However, other ecological mechanisms of psiloids have been proposed. Here, we review the literature pertinent to psilocybin ecology and propose potential adaptive advantages psiloids may confer to fungi.
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Affiliation(s)
- Matthew Meyer
- Department of Plant Pathology, The Ohio State University, Columbus, OH 43210, USA; Environmental Science Graduate Program, The Ohio State University, Columbus, OH 43210, USA; Center for Psychedelic Drug Research and Education, The Ohio State University, Columbus, OH 43210, USA.
| | - Jason Slot
- Department of Plant Pathology, The Ohio State University, Columbus, OH 43210, USA; Center for Psychedelic Drug Research and Education, The Ohio State University, Columbus, OH 43210, USA.
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Han P, Hua Z, Zhao Y, Huang L, Yuan Y. PuCRZ1, an C2H2 transcription factor from Polyporus umbellatus, positively regulates mycelium response to osmotic stress. Front Microbiol 2023; 14:1131605. [PMID: 37089566 PMCID: PMC10115967 DOI: 10.3389/fmicb.2023.1131605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2022] [Accepted: 03/21/2023] [Indexed: 04/09/2023] Open
Abstract
Polyporus umbellatus is an edible and medicinal mushroom with the capacity to produce sclerotia. However, the mechanism of P. umbellatus sclerotia formation is unclear. CRZ1 is a C2H2 family transcription factor involved in the Ca2+-calcineurin signaling pathway, which has the function of regulating sclerotia formation, maintaining ion homeostasis, and responding to stress. In this study, we identified 28 C2H2 transcription factors in P. umbellatus genome, 13 of which are differentially expressed between mycelium and sclerotia, including PuCRZ1. Combining DNA affinity purification and sequencing (DAP-seq) and quantitative real-time PCR (qRT-PCR), three genes (PuG10, PuG11, PuG12) were identified as putative PuCRZ1 target genes containing a putative binding motif (GTGGCG) within their promoter. Yeast single hybridization (Y1H) and EMSA further confirmed that PuCRZ1 can bind to the promoter region of PuG10, PuG11, and PuG12. PuCRZ1 gene could reduce the sensitivity of NaCl in yeast cells. Furthermore, overexpression of the PuCRZ1 target gene, especially the FVLY domain containing gene PuG11, could improve the mycelia growth rate and mannitol tolerance in P. umbellatus. These results demonstrate that PuCRZ1 in the Ca2+-calcineurin signaling pathway plays an important role in mycelia growth, as well as osmotic stress tolerance.
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Affiliation(s)
- Pengjie Han
- School of Pharmaceutical Sciences, Peking University, Beijing, China
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Zhongyi Hua
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Yuyang Zhao
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Luqi Huang
- School of Pharmaceutical Sciences, Peking University, Beijing, China
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
- Luqi Huang,
| | - Yuan Yuan
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
- *Correspondence: Yuan Yuan,
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Lin YC, Liu HH, Tseng MN, Chang HX. Heritability and gene functions associated with sclerotia formation of Rhizoctonia solani AG-7 using whole genome sequencing and genome-wide association study. Microb Genom 2023; 9. [PMID: 36867092 PMCID: PMC10132059 DOI: 10.1099/mgen.0.000948] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/04/2023] Open
Abstract
Sclerotia are specialized fungal structures formed by pigmented and aggregated hyphae, which can survive under unfavourable environmental conditions and serve as the primary inocula for several phytopathogenic fungi including Rhizoctonia solani. Among 154 R. solani anastomosis group 7 (AG-7) isolates collected in fields, the sclerotia-forming capability regarding sclerotia number and sclerotia size varied in the fungal population, but the genetic makeup of these phenotypes remained unclear. As limited studies have focused on the genomics of R. solani AG-7 and the population genetics of sclerotia formation, this study completed the whole genome sequencing and gene prediction of R. solani AG-7 using the Oxford NanoPore and Illumina RNA sequencing. Meanwhile, a high-throughput image-based method was established to quantify the sclerotia-forming capability, and the phenotypic correlation between sclerotia number and sclerotia size was low. A genome-wide association study identified three and five significant SNPs associated with sclerotia number and size in distinct genomic regions, respectively. Of these significant SNPs, two and four showed significant differences in the phenotypic mean separation for sclerotia number and sclerotia size, respectively. Gene ontology enrichment analysis focusing on the linkage disequilibrium blocks of significant SNPs identified more categories related to oxidative stress for sclerotia number, and more categories related to cell development, signalling and metabolism for sclerotia size. These results indicated that different genetic mechanisms may underlie these two phenotypes. Moreover, the heritability of sclerotia number and sclerotia size were estimated for the first time to be 0.92 and 0.31, respectively. This study provides new insights into the heritability and gene functions related to the development of sclerotia number and sclerotia size, which could provide additional knowledge to reduce fungal residues in fields and achieve sustainable disease management.
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Affiliation(s)
- Yu-Cheng Lin
- Department of Plant Pathology and Microbiology, National Taiwan University, Taipei City 106319, Taiwan, ROC
| | - Hsien-Hao Liu
- Department of Plant Pathology and Microbiology, National Taiwan University, Taipei City 106319, Taiwan, ROC
| | - Min-Nan Tseng
- Kaohsiung District Agricultural Research and Extension Station, Council of Agriculture, Pingtung County 908126, Taiwan, ROC
| | - Hao-Xun Chang
- Department of Plant Pathology and Microbiology, National Taiwan University, Taipei City 106319, Taiwan, ROC
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Production of Escovopsis weberi (Ascomycota: Hypocreales) Mycelial Pellets and Their Effects on Leaf-Cutting Ant Fungal Gardens. Pathogens 2023; 12:pathogens12020330. [PMID: 36839602 PMCID: PMC9965205 DOI: 10.3390/pathogens12020330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 02/07/2023] [Accepted: 02/10/2023] [Indexed: 02/18/2023] Open
Abstract
The maintenance of the symbiosis between leaf-cutting ants and their mutualistic fungus Leucoagaricus gongylophorus Singer (Moller) is vital for the survival of both species. The specialist fungal parasite Escovopsis weberi Muchovej & Della Lucia is a threat to this symbiosis, causing severe damage to the fungal garden. Mycelial pellets are resistant fungal structures that can be produced under laboratory conditions. These structures were studied for use in biological pest control, but the production of mycelial pellets has not previously been documented in Escovopsis. One of the aims of this study was to induce Escovopsis weberi to produce mycelial pellets and investigate the potential of these pellets for the control of leaf-cutting ants. We compared the pathogenicity of Escovopsis weberi mycelial pellets and conidia against mini-colonies of Acromyrmex subterraneus subterraneus Forel when applied in the form of baits. Worker ants were able to distinguish mycelial pellets from conidia, as baits with mycelial pellets were more attractive to workers than those with conidia, causing a greater negative impact on colony health. All types of baits containing Escovopsis weberi influenced the foraging activity but only treatments with viable fungal propagules resulted in an increase in the quantity of waste material, with a significant negative impact on the fungal garden biomass. The results provided novel information regarding Escovopsis recognition by worker ants and differences between conidia and mycelial pellet dynamics in leaf-cutting ant colonies, with new perspectives for the biological control of these important pests.
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Relationship between antioxidant enzymes and sclerotial formation of Pleurotus tuber-regium under abiotic stress. Appl Microbiol Biotechnol 2023; 107:1391-1404. [PMID: 36640206 DOI: 10.1007/s00253-022-12358-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2022] [Revised: 12/15/2022] [Accepted: 12/22/2022] [Indexed: 01/15/2023]
Abstract
In order to explore the relationship between sclerotial formation and antioxidant enzymes under abiotic stresses, the effects of abiotic stresses including temperature, pH value, osmotic pressure, limited nitrogen, and hydrogen peroxide (H2O2) on the activities of antioxidant enzymes, ascorbate peroxidase (APX), superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) in Pleurotus tuber-regium were studied. Meanwhile, the sclerotial formation under these abiotic stress conditions was also investigated. It was found that low temperature, weak alkaline, appropriate osmotic stress, and H2O2 can promote sclerotial formation, and sclerotial formation always tended to occur when the activities of antioxidant enzymes were at a high value. During the prolonged low temperature stress, SOD acted mainly in the early stage of stress, while POD and CAT had higher activity in the middle and late stage. Moreover, the reverse transcription quantitative polymerase chain reaction (RT-qPCR) results showed that SOD.193 and POD.535 were significantly down-regulated in sclerotia, and CAT.1115 and POD.401 were up-regulated instead. These antioxidant enzyme genes played an important role in the sclerotial formation under low temperature stress. It is strongly suggested that antioxidant enzymes and abiotic stresses are closely related to sclerotial formation in P. tuber-regium. KEY POINTS: • Low temperature and H2O2 can promote sclerotial formation. • Sclerotia are more likely to form under high antioxidant enzyme activity. • POD.401, POD.535, SOD.193, and CAT.1115 are important for sclerotial formation.
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13
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Branco S, Schauster A, Liao HL, Ruytinx J. Mechanisms of stress tolerance and their effects on the ecology and evolution of mycorrhizal fungi. THE NEW PHYTOLOGIST 2022; 235:2158-2175. [PMID: 35713988 DOI: 10.1111/nph.18308] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2022] [Accepted: 05/11/2022] [Indexed: 05/25/2023]
Abstract
Stress is ubiquitous and disrupts homeostasis, leading to damage, decreased fitness, and even death. Like other organisms, mycorrhizal fungi evolved mechanisms for stress tolerance that allow them to persist or even thrive under environmental stress. Such mechanisms can also protect their obligate plant partners, contributing to their health and survival under hostile conditions. Here we review the effects of stress and mechanisms of stress response in mycorrhizal fungi. We cover molecular and cellular aspects of stress and how stress impacts individual fitness, physiology, growth, reproduction, and interactions with plant partners, along with how some fungi evolved to tolerate hostile environmental conditions. We also address how stress and stress tolerance can lead to adaptation and have cascading effects on population- and community-level diversity. We argue that mycorrhizal fungal stress tolerance can strongly shape not only fungal and plant physiology, but also their ecology and evolution. We conclude by pointing out knowledge gaps and important future research directions required for both fully understanding stress tolerance in the mycorrhizal context and addressing ongoing environmental change.
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Affiliation(s)
- Sara Branco
- Department of Integrative Biology, University of Colorado Denver, Denver, CO, 80204, USA
| | - Annie Schauster
- Department of Integrative Biology, University of Colorado Denver, Denver, CO, 80204, USA
| | - Hui-Ling Liao
- North Florida Research and Education Center, University of Florida, Quincy, FL, 32351, USA
- Soil and Water Sciences Department, University of Florida, Gainesville, FL, 32611, USA
| | - Joske Ruytinx
- Research Groups Microbiology and Plant Genetics, Vrije Universiteit Brussel, 1050, Brussels, Belgium
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14
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Cong J, Xiao K, Jiao W, Zhang C, Zhang X, Liu J, Zhang Y, Pan H. The Coupling Between Cell Wall Integrity Mediated by MAPK Kinases and SsFkh1 Is Involved in Sclerotia Formation and Pathogenicity of Sclerotinia sclerotiorum. Front Microbiol 2022; 13:816091. [PMID: 35547112 PMCID: PMC9081980 DOI: 10.3389/fmicb.2022.816091] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Accepted: 03/22/2022] [Indexed: 12/17/2022] Open
Abstract
The plant pathogenic fungus Sclerotinia sclerotiorum can survive on a wide range of hosts and cause significant losses on crop yields. FKH, a forkhead box (FOX)-containing protein, functions to regulate transcription and signal transduction. As a transcription factor (TF) with multiple biological functions in eukaryotic organisms, little research has been done on the role of FKH protein in pathogenic fungi. SsFkh1 encodes a protein which has been predicted to contain FOX domain in S. sclerotiorum. In this study, the deletion mutant of SsFkh1 resulted in severe defects in hyphal development, virulence, and sclerotia formation. Moreover, knockout of SsFkh1 lead to gene functional enrichment in mitogen-activated protein kinase (MAPK) signaling pathway in transcriptome analysis and SsFkh1 was found to be involved in the maintenance of the cell wall integrity (CWI) and the MAPK signaling pathway. Yeast two-hybrid and bimolecular fluorescence complementation assays showed that SsFkh1 interacts with SsMkk1. In addition, we explored the conserved MAPK signaling pathway components, including Bck1, Mkk1, Pkc1, and Smk3 in S. sclerotiorum. ΔSsmkk1, ΔSspkc1, ΔSsbck1, and ΔSssmk3knockout mutant strains together with ΔSsmkk1com, ΔSspkc1com, ΔSsbck1com, and ΔSssmk3com complementation mutant strains were obtained. The results indicated that ΔSsmkk1, ΔSspkc1, ΔSsbck1, and ΔSssmk3 displayed similar phenotypes to ΔSsfkh1 in sclerotia formation, compound appressorium development, and pathogenicity. Taken together, SsFkh1 may be the downstream substrate of SsMkk1 and involved in sclerotia formation, compound appressorium development, and pathogenicity in S. sclerotiorum.
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Affiliation(s)
- Jie Cong
- College of Plant Sciences, Jilin University, Changchun, China
| | - Kunqin Xiao
- College of Plant Sciences, Jilin University, Changchun, China
| | - Wenli Jiao
- College of Plant Sciences, Jilin University, Changchun, China
| | - Cheng Zhang
- College of Resource and Environment, Jilin Agricultural University, Changchun, China
| | - Xianghui Zhang
- College of Plant Sciences, Jilin University, Changchun, China
| | - Jinliang Liu
- College of Plant Sciences, Jilin University, Changchun, China
| | - Yanhua Zhang
- College of Plant Sciences, Jilin University, Changchun, China
| | - Hongyu Pan
- College of Plant Sciences, Jilin University, Changchun, China
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15
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Acetylome analysis of acetylation providing new insight into sclerotial generation in medicinal fungus Polyporus umbellatus. Sci Rep 2022; 12:7629. [PMID: 35538155 PMCID: PMC9090770 DOI: 10.1038/s41598-022-11798-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2022] [Accepted: 04/20/2022] [Indexed: 11/09/2022] Open
Abstract
Sclerotium-forming fungi are ecologically diverse and possess notable pathogenic or medicinal properties. The sclerotial generation mechanism is still elusive though Polyporus umbellatus sclerotia are typical Traditional Chinese Medicine with diuretic and antitumor effects. Protein acetylation displays a crucial role in several biological processes, but the functions of acetylation in this valuable fungus are unknown at present. In this study, acetylome of P. umbellatus was studied using nano LC-Triple TOF mass spectrometry system following immune-affinity-based enrichment. Totally, 648 acetylated sites in 342 proteins were identified and nine motifs were found to be conserved in P. umbellatus including KacY, KacA, KacL, KacG, MacS, MacA, RacA, RacL, and RacG. Acetylated proteins taken part in types of biological processes, particularly to those in biological processes associated with reactive oxygen species (ROS) metabolism. Inhibitors complement tests were carried out to verify the role of ROS in acetylation modification. It was concluded that oxidative stress regulated sclerotial generation via proteins acetylation in P. umbellatus. The present study presents new insight into the essential roles of acetylation in sclerotial formation, which may also be applicable for other sclerotium-forming fungi.
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16
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Production of Microsclerotia by Metarhizium sp., and Factors Affecting Their Survival, Germination, and Conidial Yield. J Fungi (Basel) 2022; 8:jof8040402. [PMID: 35448633 PMCID: PMC9025875 DOI: 10.3390/jof8040402] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 04/12/2022] [Accepted: 04/13/2022] [Indexed: 11/17/2022] Open
Abstract
Microsclerotia (MS) produced by some species of Metarhizium can be used as active ingredients in mycoinsecticides for the control of soil-dwelling stages of geophilic pests. In this study, the MS production potential of two Metarhizium brunneum strains and one M. robertsii strain was evaluated. The three strains were able to produce MS in liquid fermentation, yielding between 4.0 × 106 (M. robertsii EAMa 01/158-Su strain) and 1.0 × 107 (M. brunneum EAMa 01/58-Su strain) infective propagules (CFU) per gram of MS. The EAMa 01/58-Su strain was selected for further investigation into the effects of key abiotic factors on their survival and conidial yield. The MS were demonstrated to be stable at different storage temperatures (−80, −18, and 4 °C), with a shelf-life up to one year. The best temperature for MS storage was −80 °C, ensuring good viability of MS for up to one year (4.9 × 1010 CFU/g MS). Moreover, soil texture significantly affected CFU production by MS; sandy soils were the best driver of infective propagule production. Finally, the best combination of soil temperature and humidity for MS germination was 22.7 °C and 7.3% (wt./wt.), with no significant effect of UV-B exposure time on MS viability. These results provide key insights into the handling and storage of MS, and for decision making on MS dosage and timing of application.
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17
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Caiafa MV, Smith ME. Polyphyly, asexual reproduction and dual trophic mode in Buchwaldoboletus. FUNGAL ECOL 2022. [DOI: 10.1016/j.funeco.2022.101141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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18
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Zhu LH, Xu W, Huang L, Ye JR, Li DW. Pathogenicity and Biological Characteristics of Septotinia populiperda Causing Leaf Blotch of Willow. PLANT DISEASE 2022; 106:1262-1270. [PMID: 35072492 DOI: 10.1094/pdis-07-21-1537-re] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Salix babylonica is an important landscape tree in China and has been widely planted. In this study, the pathogenicity of Septotinia populiperda causing leaf blotch of Sa. babylonica to four willow species (Sa. matsudana, Sa. chaeomoloides, Sa. matsudana f. tortuosa, and Sa. suchowensis) and Populus tomentosa (Chinese white poplar) was determined. Its sexual stage and biological characteristics were studied. Leaves from four willow species and P. tomentosa were inoculated with mycelial plugs. Typical leaf blotches with sporodochia were produced on all inoculated leaves. Among the isolates studied, some developed conidia but sclerotia were rare. The sclerotia developed apothecia after induction at 4°C for 3 months in an incubator and 2 more months outdoors from January to March. The biological characteristics of S. populiperda showed that mycelium grew better on complete medium than on potato dextrose agar, Czapek's agar, and minimal medium. For mycelial growth, the optimal carbon source was dextrose and the optimal nitrogen source was yeast powder. Conidia germination rate was 59.4% at 24 h. The conidia germinated best in a 4% willow leaf extraction. The optimal temperature for conidia germination was 25°C, and the optimal pH was 4.
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Affiliation(s)
- Li-Hua Zhu
- College of Forestry, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
| | - Wu Xu
- College of Forestry, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
- Shanghai Qingpu Forestry Station, Shanghai, 201700, China
| | - Lin Huang
- College of Forestry, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
| | - Jian-Ren Ye
- College of Forestry, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
| | - De-Wei Li
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
- The Connecticut Agricultural Experiment Station Valley Laboratory, Windsor, CT 06095, U.S.A
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19
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Enright DJ, Frangioso KM, Isobe K, Rizzo DM, Glassman SI. Mega‐fire in Redwood Tanoak Forest Reduces Bacterial and Fungal Richness and Selects for Pyrophilous Taxa that are Phylogenetically Conserved. Mol Ecol 2022; 31:2475-2493. [DOI: 10.1111/mec.16399] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Revised: 01/19/2022] [Accepted: 02/03/2022] [Indexed: 11/28/2022]
Affiliation(s)
- Dylan J. Enright
- Department of Microbiology and Plant Pathology University of California 3401 Watkins Drive Riverside CA 92521 USA
| | - Kerri M. Frangioso
- Department of Plant Pathology University of California 1 Shields Ave Davis CA 95616 USA
| | - Kazuo Isobe
- Department of Applied Biological Chemistry Graduate School of Agricultural and Life Sciences The University of Tokyo 1‐1‐1 Yayoi, Bunkyo‐ku Tokyo 113‐8657
| | - David M. Rizzo
- Department of Plant Pathology University of California 1 Shields Ave Davis CA 95616 USA
| | - Sydney I. Glassman
- Department of Microbiology and Plant Pathology University of California 3401 Watkins Drive Riverside CA 92521 USA
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20
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Rai A, Irulappan V, Senthil-Kumar M. Dry Root Rot of Chickpea: A Disease Favored by Drought. PLANT DISEASE 2022; 106:346-356. [PMID: 34649462 DOI: 10.1094/pdis-07-21-1410-fe] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Chickpea is an essential crop for protein nutrition and is grown around the world in rain-fed conditions. However, chickpea cultivation is under threat due to emerging diseases favored by drought stress. Dry root rot (DRR), an economically devastating disease, is an example. Chickpea-specific strains of a necrotic fungal phytopathogen, Macrophomina phaseolina, cause DRR. Microsclerotia of this fungus, which are capable of withstanding harsh environmental conditions, serve as primary inoculum. Initial symptoms are scattered necrotic spots in roots, progressing to rotting and withering lateral roots, accompanied by prematurely dried, straw-colored foliage. The recent rise in global temperature and worsening of drought spells have aggravated DRR outbreaks in chickpea. To date, DRR epidemiology has not been clarified in detail. Also, the literature lacks clarity on M. phaseolina taxonomy, morphology, disease progression, and diagnosis. In this article, research progress on patterns of DRR occurrence in the field and belowground and aboveground symptoms are clarified. In addition, the current understanding of taxonomy and management practices is elaborated. We also summarize knowledge of the impact of drought and high temperature on DRR severity. Furthermore, we provide future perspectives on the importance of host resistance, quantitative trait loci identification, and genotype screening for the identification of resistant genotypes. The article proposes new research priorities and a corresponding plan for the mitigation of DRR.
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Affiliation(s)
- Avanish Rai
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, P.O. Box No. 10531, New Delhi 110067, India
| | - Vadivelmurugan Irulappan
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, P.O. Box No. 10531, New Delhi 110067, India
| | - Muthappa Senthil-Kumar
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, P.O. Box No. 10531, New Delhi 110067, India
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21
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Gill NS, Turner MG, Brown CD, Glassman SI, Haire SL, Hansen WD, Pansing ER, St Clair SB, Tomback DF. Limitations to Propagule Dispersal Will Constrain Postfire Recovery of Plants and Fungi in Western Coniferous Forests. Bioscience 2022. [DOI: 10.1093/biosci/biab139] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Abstract
Many forest species are adapted to long-interval, high-severity fires, but the intervals between severe fires are decreasing with changes in climate, land use, and biological invasions. Although the effects of changing fire regimes on some important recovery processes have previously been considered, the consequences for the dispersal of propagules (plant seeds and fungal spores) in forest communities have not. We characterize three mechanisms by which changing fire regimes disrupt propagule dispersal in mesic temperate, boreal, and high-elevation forests: reduced abundance and altered spatial distributions of propagule source populations, less effective dispersal of propagules by wind, and altered behavior of animal dispersers and propagule predators. We consider how disruptions to propagule dispersal may interact with other factors that are also influenced by fire regime change, potentially increasing risk of forest conversion. Finally, we highlight urgent research topics regarding how dispersal limitation may shape twenty-first century forest recovery after stand-replacing fire.
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Affiliation(s)
- Nathan S Gill
- Texas Tech University, Lubbock, Texas, United States
| | - Monica G Turner
- University of Wisconsin–Madison, Madison, Wisconsin, United States
| | - Carissa D Brown
- Memorial University, St. John's, Newfoundland and Labrador, Canada
| | | | - Sandra L Haire
- Haire Laboratory for Landscape Ecology, Tucson, Arizona, United States
| | | | | | | | - Diana F Tomback
- University of Colorado Denver, Denver, Colorado, United States
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22
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Cao S, Yang Y, Bi G, Nelson D, Hu S, Makunga NP, Yu B, Liu X, Li X, Hu X. Genomic and Transcriptomic Insight of Giant Sclerotium Formation of Wood-Decay Fungi. Front Microbiol 2021; 12:746121. [PMID: 34712214 PMCID: PMC8546338 DOI: 10.3389/fmicb.2021.746121] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Accepted: 09/01/2021] [Indexed: 11/13/2022] Open
Abstract
Many fungi form persistent and dormant sclerotia with compact hardened mycelia during unfavorable circumstances. While most of these sclerotia are small in size, Wolfiporia cocos, a wood-decay fungus, grows into giant sclerotia, which are mainly composed of polysaccharides of linear (1→3)-β-D-glucans. To explore the underlying mechanism of converting sophisticated wood polysaccharides for biosynthesis of highly homogenized glucans in W. cocos, we sequenced and assembled the genome of a cultivated W. cocos strain (WCLT) in China. The 62-Mb haploid genome contains 44.2% repeat sequences, of which, 48.0% are transposable elements (TEs). Contrary to the genome of W. cocos from North America, WCLT has independently undergone a partial genome duplication (PGD) event. The large-scale TE insertion and PGD occurrence overlapped with an archeological Pleistocene stage of low oxygen and high temperature, and these stresses might have induced the differences in sclerotium due to geographical distribution. The wood decomposition enzymes, as well as sclerotium-regulator kinases, aquaporins, and highly expanded gene families such as NAD-related families, together with actively expressed 1,3-β-glucan synthase for sclerotium polysaccharides, all have contributed to the sclerotium formation and expansion. This study shall inspire further exploration on how fungi convert wood into simple glucans in the sclerotium of W. cocos.
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Affiliation(s)
- Shuo Cao
- Laboratory of Natural Medicine and Molecular Engineering, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.,National and Local Joint Engineering Research Center for Medicinal Plant Breeding and Cultivation, Wuhan, China.,Hubei Provincial Engineering Research Center for Medicinal Plants, Wuhan, China
| | - Yang Yang
- Laboratory of Natural Medicine and Molecular Engineering, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.,National and Local Joint Engineering Research Center for Medicinal Plant Breeding and Cultivation, Wuhan, China.,Hubei Provincial Engineering Research Center for Medicinal Plants, Wuhan, China
| | - Guiqi Bi
- Wuhan Unique Gene Bioinformatics Science and Technology Co., Ltd., Wuhan, China
| | - David Nelson
- Department of Microbiology, Immunology and Biochemistry, University of Tennessee, Memphis, TN, United States
| | - Sheng Hu
- Hubei Cancer Hospital, Wuhan, China
| | | | - Bin Yu
- Wuhan Unique Gene Bioinformatics Science and Technology Co., Ltd., Wuhan, China
| | - Xin Liu
- Beijing Genomics Institute, Chinese Academy of Sciences, Beijing, China.,State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, China
| | - Xiaohua Li
- Laboratory of Natural Medicine and Molecular Engineering, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.,National and Local Joint Engineering Research Center for Medicinal Plant Breeding and Cultivation, Wuhan, China.,Hubei Provincial Engineering Research Center for Medicinal Plants, Wuhan, China
| | - Xuebo Hu
- Laboratory of Natural Medicine and Molecular Engineering, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.,National and Local Joint Engineering Research Center for Medicinal Plant Breeding and Cultivation, Wuhan, China.,Hubei Provincial Engineering Research Center for Medicinal Plants, Wuhan, China
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23
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Zhang S, Zhu P, Cao B, Ma S, Li R, Wang X, Zhao A. An APSES Transcription Factor Xbp1 Is Required for Sclerotial Development, Appressoria Formation, and Pathogenicity in Ciboria shiraiana. Front Microbiol 2021; 12:739686. [PMID: 34646256 PMCID: PMC8503677 DOI: 10.3389/fmicb.2021.739686] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2021] [Accepted: 08/26/2021] [Indexed: 11/26/2022] Open
Abstract
Sclerotinia diseases are important plant fungal diseases that, causes huge economic worldwide losses every year. Ciboria shiraiana is the main pathogen that results in mulberry sclerotia diseases. Sclerotia and appressoria play important roles in long-term pathogen survival and in host infection during life and disease cycles. However, the molecular mechanisms of sclerotial development and appressoria formation in C. shiraiana have not been well studied. Here, an Asm1p, Phd1p, Sok2p, Efg1p and StuAp (APSES)-type transcription factor in C. shiraiana, CsXbp1, involved in sclerotial development and appressoria formation was functionally characterized. Bioinformatics analyses showed that CsXbp1 contained an APSES-type DNA binding domain. The expression levels of CsXbp1 were higher in sclerotia and during later stages of infection. Compared with wild-type strains, hyphal growth was slower, the number and weight of sclerotia were reduced significantly, and appressoria formation was obviously delayed in CsXbp1 RNA interference (RNAi) strains. Moreover, the CsXbp1 RNAi strains showed weakened pathogenicity owing to compound appressoria defects. Tobacco rattle virus-mediated host-induced gene silencing enabled Nicotiana benthamiana to increase its resistance to C. shiraiana by reducing the CsXbp1 transcripts level. Thus, CsXbp1 plays vital roles in sclerotial formation, appressoria formation, and pathogenicity in C. shiraiana. This study provides new insights into the infection mechanisms of C. shiraiana and plant resistance breeding.
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Affiliation(s)
- Shuai Zhang
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
| | - Panpan Zhu
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China.,Key Laboratory of Biorheological Science and Technology, Ministry of Education, Chongqing University, Chongqing, China
| | - Boning Cao
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China.,College of Life Sciences, Xinyang Normal University, Xinyang, China
| | - Shuyu Ma
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
| | - Ruolan Li
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
| | - Xie Wang
- Institute of Agricultural Resources and Environment, Sichuan Academy of Agricultural Sciences, Sichuan, China
| | - Aichun Zhao
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
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24
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van de Peppel LJJ, Nieuwenhuis M, Auxier B, Grum-Grzhimaylo AA, Cárdenas ME, de Beer ZW, Lodge DJ, Smith ME, Kuyper TW, Franco-Molano AE, Baroni TJ, Aanen DK. Ancestral predisposition toward a domesticated lifestyle in the termite-cultivated fungus Termitomyces. Curr Biol 2021; 31:4413-4421.e5. [PMID: 34403645 DOI: 10.1016/j.cub.2021.07.070] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 06/22/2021] [Accepted: 07/27/2021] [Indexed: 10/20/2022]
Abstract
The ancestor of termites relied on gut symbionts for degradation of plant material, an association that persists in all termite families.1,2 However, the single-lineage Macrotermitinae has additionally acquired a fungal symbiont that complements digestion of food outside the termite gut.3 Phylogenetic analysis has shown that fungi grown by these termites form a clade-the genus Termitomyces-but the events leading toward domestication remain unclear.4 To address this, we reconstructed the lifestyle of the common ancestor of Termitomyces using a combination of ecological data with a phylogenomic analysis of 21 related non-domesticated species and 25 species of Termitomyces. We show that the closely related genera Blastosporella and Arthromyces also contain insect-associated species. Furthermore, the genus Arthromyces produces asexual spores on the mycelium, which may facilitate insect dispersal when growing on aggregated subterranean fecal pellets of a plant-feeding insect. The sister-group relationship between Arthromyces and Termitomyces implies that insect association and asexual sporulation, present in both genera, preceded the domestication of Termitomyces and did not follow domestication as has been proposed previously. Specialization of the common ancestor of these two genera on an insect-fecal substrate is further supported by similar carbohydrate-degrading profiles between Arthromyces and Termitomyces. We describe a set of traits that may have predisposed the ancestor of Termitomyces toward domestication, with each trait found scattered in related taxa outside of the termite-domesticated clade. This pattern indicates that the origin of the termite-fungus symbiosis may not have required large-scale changes of the fungal partner.
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Affiliation(s)
- Lennart J J van de Peppel
- Laboratory of Genetics, Wageningen University & Research, Droevendaalsesteeg 1, 6708PB Wageningen, the Netherlands.
| | - Mathijs Nieuwenhuis
- Laboratory of Genetics, Wageningen University & Research, Droevendaalsesteeg 1, 6708PB Wageningen, the Netherlands
| | - Benjamin Auxier
- Laboratory of Genetics, Wageningen University & Research, Droevendaalsesteeg 1, 6708PB Wageningen, the Netherlands
| | - Alexey A Grum-Grzhimaylo
- Microbial Ecology Department, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, the Netherlands
| | - Martha E Cárdenas
- Laboratorio de Micología y Fitopatología-LAMFU, Universidad de Los Andes, Carrera 1 # 10A-12, Bogotá, Colombia
| | - Z Wilhelm de Beer
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa
| | - D Jean Lodge
- Department of Plant Pathology, 2105 Miller Plant Sciences Building, University of Georgia, Athens, GA 30606, USA
| | - Matthew E Smith
- Department of Plant Pathology, University of Florida, Gainesville, FL 32611, USA
| | - Thomas W Kuyper
- Soil Biology Group, Wageningen University & Research, Box 47, 6700AA Wageningen, the Netherlands
| | - Ana E Franco-Molano
- Laboratorio de Taxonomía y Ecología de Hongos (TEHO), Instituto de Biología, Facultad de Ciencias Exactas y Naturales, Universidad de Antioquia UdeA, Calle 70 No. 52-21, Medellín, Colombia
| | - Timothy J Baroni
- Department of Biological Sciences, State University of New York, College at Cortland, PO Box 2000, Cortland, NY 13045, USA
| | - Duur K Aanen
- Laboratory of Genetics, Wageningen University & Research, Droevendaalsesteeg 1, 6708PB Wageningen, the Netherlands.
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Cao B, Haelewaters D, Schoutteten N, Begerow D, Boekhout T, Giachini AJ, Gorjón SP, Gunde-Cimerman N, Hyde KD, Kemler M, Li GJ, Liu DM, Liu XZ, Nuytinck J, Papp V, Savchenko A, Savchenko K, Tedersoo L, Theelen B, Thines M, Tomšovský M, Toome-Heller M, Urón JP, Verbeken A, Vizzini A, Yurkov AM, Zamora JC, Zhao RL. Delimiting species in Basidiomycota: a review. FUNGAL DIVERS 2021. [DOI: 10.1007/s13225-021-00479-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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26
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Garádi Z, Dékány M, Móricz ÁM, Gaál A, Papp V, Béni S, Ványolós A. Antimicrobial, Antioxidant and Antiproliferative Secondary Metabolites from Inonotus nidus-pici. Molecules 2021; 26:molecules26185453. [PMID: 34576923 PMCID: PMC8468361 DOI: 10.3390/molecules26185453] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Revised: 08/26/2021] [Accepted: 08/29/2021] [Indexed: 11/23/2022] Open
Abstract
Inonotus nidus-pici is a sterile conk which produces macrofungus, a neglected Central-Eastern European relative of the prized Inonotus obliquus, also known as chaga. Investigation of the methanol extract of the poroid fungus I. nidus-pici resulted in the isolation of citropremide (1), 3,4-dihydroxybenzalacetone (2) , lanosterol (3), ergost-6,8,22-trien-3β-ol (4), and ergosterol peroxide (5). The structures of fungal compounds were determined on the basis of one- and two-dimensional NMR and MS spectroscopic analysis. Compounds 1–2 and 4–5 were evaluated for their antioxidant and antimicrobial properties against several bacterial and fungal strains. 3,4-dihydroxybenzalacetone (2) and ergost-6,8,22-trien-3β-ol (4) demonstrated moderate antimicrobial activity, while the former possessed notable antioxidant activity in DPPH assay. The antiproliferative examinations performed on three human cancer (MES-SA, MES-SA/Dx5, A431) cell lines demonstrated that compounds 4 and 5 have notable cytotoxic activity with IC values in micromolar range. The current study represents the first report on the chemical profile of I. nidus-pici, providing a comprehensive study on the isolation and structure determination of bioactive secondary metabolites of this macrofungus.
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Affiliation(s)
- Zsófia Garádi
- Department of Pharmacognosy, Semmelweis University, Üllői út. 26, H-1085 Budapest, Hungary; (Z.G.); (S.B.)
- Directorate of Drug Substance Development, Egis Pharmaceuticals Plc, P.O. Box 100, H-1475 Budapest, Hungary
| | - Miklós Dékány
- Spectroscopic Research, Gedeon Richter Plc., Gyömrői út 19-21, H-1103 Budapest, Hungary;
| | - Ágnes M. Móricz
- Plant Protection Institute, Centre for Agricultural Research, ELKH, Herman Ottó út 15, H-1022 Budapest, Hungary;
| | - Anikó Gaál
- Biological Nanochemistry Research Group, Institute of Materials and Environmental Chemistry, Research Centre for Natural Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary;
| | - Viktor Papp
- Department of Botany, Hungarian University of Agriculture and Life Sciences, Villányi út 29-43, H-1118 Budapest, Hungary;
| | - Szabolcs Béni
- Department of Pharmacognosy, Semmelweis University, Üllői út. 26, H-1085 Budapest, Hungary; (Z.G.); (S.B.)
| | - Attila Ványolós
- Department of Pharmacognosy, Semmelweis University, Üllői út. 26, H-1085 Budapest, Hungary; (Z.G.); (S.B.)
- Correspondence:
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27
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Dauphin B, de Freitas Pereira M, Kohler A, Grigoriev IV, Barry K, Na H, Amirebrahimi M, Lipzen A, Martin F, Peter M, Croll D. Cryptic genetic structure and copy-number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum. Environ Microbiol 2021; 23:6536-6556. [PMID: 34472169 PMCID: PMC9293092 DOI: 10.1111/1462-2920.15752] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Revised: 08/27/2021] [Accepted: 08/30/2021] [Indexed: 01/22/2023]
Abstract
Ectomycorrhizal (ECM) fungi associated with plants constitute one of the most successful symbiotic interactions in forest ecosystems. ECM support trophic exchanges with host plants and are important factors for the survival and stress resilience of trees. However, ECM clades often harbour morpho-species and cryptic lineages, with weak morphological differentiation. How this relates to intraspecific genome variability and ecological functioning is poorly known. Here, we analysed 16 European isolates of the ascomycete Cenococcum geophilum, an extremely ubiquitous forest symbiotic fungus with no known sexual or asexual spore-forming structures but with a massively enlarged genome. We carried out whole-genome sequencing to identify single-nucleotide polymorphisms. We found no geographic structure at the European scale but divergent lineages within sampling sites. Evidence for recombination was restricted to specific cryptic lineages. Lineage differentiation was supported by extensive copy-number variation. Finally, we confirmed heterothallism with a single MAT1 idiomorph per genome. Synteny analyses of the MAT1 locus revealed substantial rearrangements and a pseudogene of the opposite MAT1 idiomorph. Our study provides the first evidence for substantial genome-wide structural variation, lineage-specific recombination and low continent-wide genetic differentiation in C. geophilum. Our study provides a foundation for targeted analyses of intra-specific functional variation in this major symbiosis.
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Affiliation(s)
| | - Maíra de Freitas Pereira
- Swiss Federal Research Institute WSL, Birmensdorf, Switzerland.,INRAE, UMR 1136 INRAE-University of Lorraine, Interactions Arbres/Microorganismes, Laboratory of Excellence ARBRE, INRAE-Grand Est, Champenoux, France
| | - Annegret Kohler
- INRAE, UMR 1136 INRAE-University of Lorraine, Interactions Arbres/Microorganismes, Laboratory of Excellence ARBRE, INRAE-Grand Est, Champenoux, France
| | - Igor V Grigoriev
- Department of Plant and Microbial Biology, University of California, Berkeley, USA.,U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, USA
| | - Kerrie Barry
- U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, USA
| | - Hyunsoo Na
- U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, USA
| | - Mojgan Amirebrahimi
- U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, USA
| | - Anna Lipzen
- U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, USA
| | - Francis Martin
- INRAE, UMR 1136 INRAE-University of Lorraine, Interactions Arbres/Microorganismes, Laboratory of Excellence ARBRE, INRAE-Grand Est, Champenoux, France
| | - Martina Peter
- Swiss Federal Research Institute WSL, Birmensdorf, Switzerland
| | - Daniel Croll
- Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel, Neuchâtel, Switzerland
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28
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Catão AML, Rodrigues J, Marreto RN, Mascarin GM, Fernandes ÉKK, Humber RA, Luz C. Optimization of granular formulations of Metarhizium humberi microsclerotia with humectants. J Basic Microbiol 2021; 61:808-813. [PMID: 34309880 DOI: 10.1002/jobm.202100171] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 06/01/2021] [Accepted: 07/04/2021] [Indexed: 11/11/2022]
Abstract
Granular microsclerotial formulations of entomopathogenic fungi deserve attention because of their post-application, in situ production of new conidia that enhance and prolong mycoinsecticidal efficacy against a target pest insect. Because high ambient moisture is a crucial condition to induce fungal development and conidiogenesis on granules, we tested the impacts of the additions of three humectants-glycerin, propylene glycol, and polyethylene glycol 400-on water absorption by pellets incorporating microsclerotia of Metarhizium humberi IP 46 with microcrystalline cellulose or vermiculite carriers, and on the production of infective conidia of IP 46 microsclerotia in ambient humidities suboptimal for routine conidiogenesis. Glycerin facilitated greater and faster absorption of water than the other humectants. Microcrystalline cellulose absorbed low quantities of water without any added humectant whereas vermiculite did not. IP 46 did not grow or sporulate on pellets prepared with or without glycerin at 86% relative humidity (RH) or on control pellets without glycerin at 91% RH; conidial production on pellets prepared with vermiculite or microcrystalline cellulose and 10% glycerin reached 1.1 × 105 conidia/mg and 1 × 105 conidia/mg, respectively, after 20 days of exposure at 91% RH. Hence, these results strongly support glycerin as a suitable humectant for granular microsclerotial formulations of this fungus.
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Affiliation(s)
- Alaine M L Catão
- Laboratório de Patologia de Invertebrados (LPI), Instituto de Patologia Tropical e Saúde Pública (IPTSP), Universidade Federal de Goiás (UFG), Goiânia, Goiás, Brazil
| | - Juscelino Rodrigues
- Laboratório de Patologia de Invertebrados (LPI), Instituto de Patologia Tropical e Saúde Pública (IPTSP), Universidade Federal de Goiás (UFG), Goiânia, Goiás, Brazil
| | - Ricardo N Marreto
- Laboratório de Nanossistemas e Dispositivos de Liberação de Fármacos (NanoSYS), Faculdade de Farmácia, Universidade Federal de Goiás (UFG), Goiânia, Goiás, Brazil
| | | | - Éverton K K Fernandes
- Laboratório de Patologia de Invertebrados (LPI), Instituto de Patologia Tropical e Saúde Pública (IPTSP), Universidade Federal de Goiás (UFG), Goiânia, Goiás, Brazil
| | - Richard A Humber
- Robert W Holley Center for Agriculture and Health, USDA-ARS, Ithaca, New York, USA
| | - Christian Luz
- Laboratório de Patologia de Invertebrados (LPI), Instituto de Patologia Tropical e Saúde Pública (IPTSP), Universidade Federal de Goiás (UFG), Goiânia, Goiás, Brazil
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29
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Comparative transcriptome analysis of cells from different areas reveals ROS responsive mechanism at sclerotial initiation stage in Morchella importuna. Sci Rep 2021; 11:9418. [PMID: 33941791 PMCID: PMC8093252 DOI: 10.1038/s41598-021-87784-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Accepted: 04/05/2021] [Indexed: 12/23/2022] Open
Abstract
Morels are some of the most highly prized edible and medicinal mushrooms, with great economic and scientific value. Outdoor cultivation has been achieved and expanded on a large scale in China in recent years. Sclerotial formation is one of the most important phases during the morel life cycle, and previous reports indicated that reactive oxygen species (ROS) play an important role. However, ROS response mechanisms at sclerotial initiation (SI) stage are poorly understood. In this study, comparative transcriptome analyses were performed with sclerotial and hyphal cells at different areas in the same plate at SI stage. Gene expression was significantly different at SI stage between sclerotial formation and mycelia growth areas. GO and KEGG analyses indicated more vigorous metabolic characteristics in the hyphae area, while transcription process, DNA repair, and protein processing were enriched in sclerotial cells. Gene expression related to H2O2 production was high in the hyphae area, while expression of H2O2-scavenging genes was high in sclerotial cells, leading to a higher H2O2 concentration in the hyphal region than in the sclerotium. Minor differences were observed in gene expression of H2O2-induced signaling pathway in sclerotial and hyphal cells; however, expression levels of the target genes of transcription factor MSN2, important in the H2O2-induced signaling pathways, were significantly different. MSN2 enhanced stress response regulation in sclerotia by regulating these target genes. Small molecular HSPs were also found upregulated in sclerotial cells. This study indicated that sclerotial cells are more resistant to ROS stress than hyphal cells through transcriptional regulation of related genes.
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30
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Ellena V, Bucchieri D, Arcalis E, Sauer M, Steiger MG. Sclerotia formed by citric acid producing strains of Aspergillus niger: Induction and morphological analysis. Fungal Biol 2021; 125:485-494. [PMID: 34024596 DOI: 10.1016/j.funbio.2021.01.008] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 01/22/2021] [Accepted: 01/25/2021] [Indexed: 02/07/2023]
Abstract
Some strains of Aspergillus niger have been previously reported to produce sclerotia under certain conditions. Sclerotia are aggregations of hyphae which can act either as survival or as sexual structures in species related to A. niger. In this study, we were able to induce the formation of sclerotia in the progenitor of the industrial citric acid producing strains of A. niger, ATCC 1015, and in pyrG mutants derived from it. Sclerotia can be stably formed by ATCC 1015 on malt extract agar medium supplemented with raisins, showing a spatial differentiation of the fungus dependent on the addition and on the position of the fruits into the medium. On other media, including malt extract agar, pyrG auxotrophs also form abundant sclerotia, while the complementation of this gene reverses this phenotype. Additionally, a macro- and microscopical analysis of the sclerotia is reported. Our results show that the sclerotia formed by A. niger are similar to those formed by other fungi, not only in their morphology but also in their ability to germinate and regenerate the organism.
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Affiliation(s)
- Valeria Ellena
- Austrian Centre of Industrial Biotechnology (ACIB GmbH), Muthgasse 18, Vienna, Austria; Institute of Microbiology and Microbial Biotechnology, BOKU-VIBT, University of Natural Resources and Life Sciences, Muthgasse 18, Vienna, Austria; Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna, Austria
| | - Daniela Bucchieri
- Institute of Microbiology and Microbial Biotechnology, BOKU-VIBT, University of Natural Resources and Life Sciences, Muthgasse 18, Vienna, Austria
| | - Elsa Arcalis
- Department of Applied Genetics and Cell Biology (DAGZ), University of Natural Resources and Life Sciences, Muthgasse 11, Vienna, Austria
| | - Michael Sauer
- Austrian Centre of Industrial Biotechnology (ACIB GmbH), Muthgasse 18, Vienna, Austria; Institute of Microbiology and Microbial Biotechnology, BOKU-VIBT, University of Natural Resources and Life Sciences, Muthgasse 18, Vienna, Austria; CD Laboratory for Biotechnology of Glycerol, Muthgasse 18, Vienna, Austria
| | - Matthias G Steiger
- Austrian Centre of Industrial Biotechnology (ACIB GmbH), Muthgasse 18, Vienna, Austria; Institute of Microbiology and Microbial Biotechnology, BOKU-VIBT, University of Natural Resources and Life Sciences, Muthgasse 18, Vienna, Austria; Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna, Austria.
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31
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Nyamsanjaa K, Watanabe M, Sakagami N, Oyuntsetseg B. Metal accumulation in sclerotium grains collected from low pH forest soils. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART A, TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING 2021; 56:303-309. [PMID: 33459148 DOI: 10.1080/10934529.2021.1872316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 12/30/2020] [Accepted: 12/30/2020] [Indexed: 06/12/2023]
Abstract
Although sclerotia are known as the resting bodies of fungi, the exact biochemical properties of melanized sclerotia that allow them to remain in the soil and retain their structure are unclear. This study aims to examine the mobility and accumulation of metals in melanin-pigmented sclerotia from low pH forest soils, focusing on Al, Cu, Zn, As, and Pb, and to discuss the regulating factors involved in element transfer from soil to sclerotia. Soil and sclerotia samples were collected from five sites, with soil samples analyzed for pH and element composition and sclerotium samples investigated in terms of element composition and 14C age. Results from our study indicate that sclerotia may archive the mobilization and availability of metal ions such as Zn, Cu, As, and Pb, as well as major metal ions such as Al and Fe. Although availability and uptake are influenced by environmental conditions, the mechanism of Al accumulation in sclerotia may be abiotically promoted due to melanin in sclerotia found in forest soil. Sclerotia can be a bio-indicator of environmental pollution. Our study makes a significant contribution to environmental toxicology, as few studies have focused on accumulation of metals in each transfer step from soil to sclerotia.
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Affiliation(s)
- Khulan Nyamsanjaa
- Department of Geography, Tokyo Metropolitan University, Tokyo, Japan
| | - Makiko Watanabe
- Department of Geography, Tokyo Metropolitan University, Tokyo, Japan
| | - Nobuo Sakagami
- College of Agriculture, Ibaraki University, Ibaraki, Japan
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32
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Fritsche Y, Lopes ME, Selosse MA, Stefenon VM, Guerra MP. Serendipita restingae sp. nov. (Sebacinales): an orchid mycorrhizal agaricomycete with wide host range. MYCORRHIZA 2021; 31:1-15. [PMID: 33156451 DOI: 10.1007/s00572-020-01000-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2020] [Accepted: 10/21/2020] [Indexed: 05/04/2023]
Abstract
The Serendipitaceae family was erected in 2016 to accommodate the Sebacinales 'group B' clade, which contains peculiar species of cultivable root-associated fungi involved in symbiotic associations with a wide range of plant species. Here we report the isolation of a new Serendipita species which was obtained from protocorms of the terrestrial orchid Epidendrum fulgens cultivated in a greenhouse. This species is described based on phylogenetic analysis and on its microscopic and ultrastructural features in pure culture and in association with the host's protocorms. Its genome size was estimated using flow cytometry, and its capacity to promote the germination of E. fulgens seeds and to associate with roots of Arabidopsis thaliana was also investigated. Serendipita restingae sp. nov. is closely related to Serendipita sp. MAFF305841, isolated from Microtis rara (Orchidaceae), from which it differs by 14.2% in the ITS region and by 6.5% in the LSU region. It produces microsclerotia formed of non-monilioid hyphae, a feature that was not reported for the Sebacinales hitherto. Serendipita restingae promoted the germination of E. fulgens seeds, forming typical mycorrhizal pelotons within protocorm cells. It was also able to colonize the roots of Arabidopsis thaliana under in vitro conditions. Arabidopsis plants grown in association with S. restingae increased their biomass more than fourfold. Serendipita restingae is the first Serendipitaceae species described for the Americas.
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Affiliation(s)
- Yohan Fritsche
- Plant Developmental Physiology and Genetics Laboratory, Department of Plant Science, Federal University of Santa Catarina, SC, 88034-001, Florianópolis, Brazil
| | - Morgana E Lopes
- Plant Developmental Physiology and Genetics Laboratory, Department of Plant Science, Federal University of Santa Catarina, SC, 88034-001, Florianópolis, Brazil
| | - Marc-André Selosse
- Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National D'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, 39, 57 rue Cuvier, F-750055, Paris, CP, France
- Faculty of Biology, University of Gdańsk, ul. Wita Stwosza 59, 80-308, Gdansk, Poland
| | - Valdir M Stefenon
- Plant Developmental Physiology and Genetics Laboratory, Department of Plant Science, Federal University of Santa Catarina, SC, 88034-001, Florianópolis, Brazil
| | - Miguel P Guerra
- Plant Developmental Physiology and Genetics Laboratory, Department of Plant Science, Federal University of Santa Catarina, SC, 88034-001, Florianópolis, Brazil.
- Graduate Program in Agricultural and Natural Ecosystems, Federal University of Santa Catarina, Curitibanos, SC, 89520-000, Brazil.
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Wu F, Li SJ, Dong CH, Dai YC, Papp V. The Genus Pachyma (Syn. Wolfiporia) Reinstated and Species Clarification of the Cultivated Medicinal Mushroom "Fuling" in China. Front Microbiol 2020; 11:590788. [PMID: 33424793 PMCID: PMC7793888 DOI: 10.3389/fmicb.2020.590788] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Accepted: 11/06/2020] [Indexed: 11/13/2022] Open
Abstract
The fungus "Fuling" has been used in Chinese traditional medicine for more than 2000 years, and its sclerotia have a wide range of biological activities including antitumour, immunomodulation, anti-inflammation, antioxidation, anti-aging etc. This prized medicinal mushroom also known as "Hoelen" is resurrected from a piece of pre-Linnean scientific literature. Fries treated it as Pachyma hoelen Fr. and mentioned that it was cultivated on pine trees in China. However, this name had been almost forgotten, and Poria cocos (syn. Wolfiporia cocos), originally described from North America, and known as "Tuckahoe" has been applied to "Fuling" in most publications. Although Merrill mentioned a 100 years ago that Asian Pachyma hoelen and North American P. cocos are similar but different, no comprehensive taxonomical studies have been carried out on the East Asian Pachyma hoelen and its related species. Based on phylogenetic analyses and morphological examination on both the sclerotia and the basidiocarps which are very seldomly developed, the East Asian samples of Pachyma hoelen including sclerotia, commercial strains for cultivation and fruiting bodies, nested in a strongly supported, homogeneous lineage which clearly separated from the lineages of North American Wolfiporia cocos and other species. So we confirm that the widely cultivated "Fuling" Pachyma hoelen in East Asia is not conspecific with the North American Wolfiporia cocos. Based on the changes in Art. 59 of the International Code of Nomenclature for algae, fungi, and plants, the generic name Pachyma, which was sanctioned by Fries, has nomenclatural priority (ICN, Art. F.3.1), and this name well represents the economically important stage of the generic type. So we propose to use Pachyma rather than Wolfiporia, and subsequently Pachyma hoelen and Pachyma cocos are the valid names for "Fuling" in East Asia and "Tuckahoe" in North America, respectively. In addition, a new combination, Pachyma pseudococos, is proposed. Furthermore, it seems that Pachyma cocos is a species complex, and that three species exist in North America.
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Affiliation(s)
- Fang Wu
- Institute of Microbilogy, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing, China
| | - Shou-Jian Li
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Cai-Hong Dong
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Yu-Cheng Dai
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, China
| | - Viktor Papp
- Institute of Horticultural Plant Biology, Szent István University, Budapest, Hungary
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34
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Maekawa N, Yokoi H, Sotome K, Matsuura K, Tanaka C, Endo N, Nakagiri A, Ushijima S. Athelia termitophila sp. nov. is the teleomorph of the termite ball fungus Fibularhizoctonia sp. MYCOSCIENCE 2020. [DOI: 10.1016/j.myc.2020.08.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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35
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Xia Z, Wang Z, Kav NNV, Ding C, Liang Y. Characterization of microRNA-like RNAs associated with sclerotial development in Sclerotinia sclerotiorum. Fungal Genet Biol 2020; 144:103471. [PMID: 32971275 DOI: 10.1016/j.fgb.2020.103471] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Revised: 09/03/2020] [Accepted: 09/08/2020] [Indexed: 12/29/2022]
Abstract
Sclerotinia sclerotiorum is a model necrotrophic pathogen causing great economic losses worldwide. Sclerotia are dormant structures that play significant biological and ecological roles in the life and disease cycles of S. sclerotiorum and other species of sclerotia-forming fungi. microRNA-like RNAs (milRNAs) as non-coding small RNAs play regulatory roles in fungal development and pathogenicity. Therefore, milRNAs associated with sclerotial development in S. sclerotiorum were investigated in this study. A total of 275 milRNAs with induced expression during sclerotia development were identified, in which 51 were differentially expressed. The target genes of all milRNAs were predicted. The putative functions of the targets regulated by milRNAs were annotated by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses. The expression levels of six selected milRNAs that coordinated with their corresponding targets were validated by qRT-PCR. Among these six milRNAs, Ssc-milR-240 was potentially associated with sclerotial development by epigenetic regulation of its target histone acetyltransferase. This study will facilitate the better understanding of the milRNA regulation associated with sclerotial development in S. sclerotiorum and even other sclerotia-forming fungi. This work will provide novel insights into the molecular regulations of fungal morphogenesis and the candidate targets of milRNAs used for the sustainable management of plant diseases caused by S. sclerotiorum.
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Affiliation(s)
- Zihao Xia
- College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China; Liaoning Key Laboratory of Plant Pathology, Shenyang Agricultural University, Shenyang 110866, China
| | - Zehao Wang
- College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China; Liaoning Key Laboratory of Plant Pathology, Shenyang Agricultural University, Shenyang 110866, China
| | - Nat N V Kav
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G2P5, Canada
| | - Chengsong Ding
- College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China; Liaoning Key Laboratory of Plant Pathology, Shenyang Agricultural University, Shenyang 110866, China
| | - Yue Liang
- College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China; Liaoning Key Laboratory of Plant Pathology, Shenyang Agricultural University, Shenyang 110866, China.
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36
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Jørgensen TR, Burggraaf AM, Arentshorst M, Schutze T, Lamers G, Niu J, Kwon MJ, Park J, Frisvad JC, Nielsen KF, Meyer V, van den Hondel CA, Dyer PS, Ram AF. Identification of SclB, a Zn(II)2Cys6 transcription factor involved in sclerotium formation in Aspergillus niger. Fungal Genet Biol 2020; 139:103377. [DOI: 10.1016/j.fgb.2020.103377] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2019] [Revised: 02/07/2020] [Accepted: 02/14/2020] [Indexed: 10/24/2022]
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Sun X, Liu D, Wang Y, Ma A. Biogenesis of macrofungal sclerotia: influencing factors and molecular mechanisms. Appl Microbiol Biotechnol 2020; 104:4227-4234. [PMID: 32198573 DOI: 10.1007/s00253-020-10545-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Revised: 03/04/2020] [Accepted: 03/11/2020] [Indexed: 12/11/2022]
Abstract
Sclerotia are dense, hard tissue structures formed by asexual reproduction of fungal hyphae in adverse environmental conditions. Macrofungal sclerotia are used in medicinal materials, healthcare foods, and nutritional supplements because of their nutritional value and biologically active ingredients, which are attracting increasing attention. Over the past few decades, the influence of abiotic factors such as nutrition (e.g., carbon and nitrogen sources) and environmental conditions (e.g., temperature, pH), and of the local biotic community (e.g., concomitants) on the formation of macrofungal sclerotia has been studied. The molecular mechanisms controlling macrofungal sclerotia formation, including oxidative stress (reactive oxygen species), signal transduction (Ca2+ channels and mitogen-activated protein kinase pathways), and gene expression regulation (differential expression of important enzyme or structural protein genes), have also been revealed. At the end of this review, future research prospects in the field of biogenesis of macrofungal sclerotia are discussed. KEY POINTS: • We describe factors that influence biogenesis of macrofungal sclerotia. • We explain molecular mechanisms of sclerotial biogenesis. • We discuss future directions of study of macrofungal sclerotia biogenesis.
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Affiliation(s)
- Xueyan Sun
- College of Food Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Dongmei Liu
- College of Food Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Yuanyuan Wang
- College of Food Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Aimin Ma
- College of Food Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
- Key Laboratory of Agro-Microbial Resources and Utilization, Ministry of Agriculture, Wuhan, 430070, China.
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Chang PK, Cary JW, Lebar MD. Biosynthesis of conidial and sclerotial pigments in Aspergillus species. Appl Microbiol Biotechnol 2020; 104:2277-2286. [PMID: 31974722 DOI: 10.1007/s00253-020-10347-y] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Revised: 12/19/2019] [Accepted: 01/03/2020] [Indexed: 11/27/2022]
Abstract
Fungal pigments, which are classified as secondary metabolites, are polymerized products derived mostly from phenolic precursors with remarkable structural diversity. Pigments of conidia and sclerotia serve myriad functions. They provide tolerance against various environmental stresses such as ultraviolet light, oxidizing agents, and ionizing radiation. Some pigments even play a role in fungal pathogenesis. This review gathers available research and discusses current knowledge on the formation of conidial and sclerotial pigments in aspergilli. It examines organization of genes involved in pigment production, biosynthetic pathways, and biological functions and reevaluates some of the current dogma, especially with respect to the DHN-melanin pathway, on the production of these enigmatic polymers. A better understanding of the structure and biosynthesis of melanins and other pigments could facilitate strategies to mitigate fungal pathogenesis.
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Affiliation(s)
- Perng-Kuang Chang
- Agricultural Research Service, U. S. Department of Agriculture, Southern Regional Research Center, 1100 Robert E. Lee Boulevard, New Orleans, LA, 70124, USA.
| | - Jeffrey W Cary
- Agricultural Research Service, U. S. Department of Agriculture, Southern Regional Research Center, 1100 Robert E. Lee Boulevard, New Orleans, LA, 70124, USA.
| | - Matthew D Lebar
- Agricultural Research Service, U. S. Department of Agriculture, Southern Regional Research Center, 1100 Robert E. Lee Boulevard, New Orleans, LA, 70124, USA
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Li D, Qin L, Wang Y, Xie Q, Li N, Wang S, Yuan J. AflSte20 Regulates Morphogenesis, Stress Response, and Aflatoxin Biosynthesis of Aspergillus flavus. Toxins (Basel) 2019; 11:toxins11120730. [PMID: 31847206 PMCID: PMC6950481 DOI: 10.3390/toxins11120730] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Revised: 12/10/2019] [Accepted: 12/11/2019] [Indexed: 12/15/2022] Open
Abstract
Various signaling pathways in filamentous fungi help cells receive and respond to environmental information. Previous studies have shown that the mitogen-activated protein kinase (MAPK) pathway is phosphorylation-dependent and activated by different kinase proteins. Serine/threonine kinase plays a very important role in the MAPK pathway. In this study, we selected the serine/threonine kinase AflSte20 in Aspergillus flavus for functional study. By constructing Aflste20 knockout mutants and complemented strains, it was proven that the Aflste20 knockout mutant (ΔAflste20) showed a significant decrease in growth, sporogenesis, sclerotinogenesis, virulence, and infection compared to the WT (wild type) and complemented strain (ΔAflste20C). Further research indicated that ΔAflste20 has more sensitivity characteristics than WT and ΔAflste20C under various stimuli such as osmotic stress and other types of environmental stresses. Above all, our study showed that the mitogen-activated kinase AflSte20 plays an important role in the growth, conidia production, stress response and sclerotia formation, as well as aflatoxin biosynthesis, in A. flavus.
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Affiliation(s)
| | | | | | | | | | - Shihua Wang
- Correspondence: (S.W.); (J.Y.); Tel./Fax: +86-591-8378-7126 (S.W.)
| | - Jun Yuan
- Correspondence: (S.W.); (J.Y.); Tel./Fax: +86-591-8378-7126 (S.W.)
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Vašutová M, Mleczko P, López-García A, Maček I, Boros G, Ševčík J, Fujii S, Hackenberger D, Tuf IH, Hornung E, Páll-Gergely B, Kjøller R. Taxi drivers: the role of animals in transporting mycorrhizal fungi. MYCORRHIZA 2019; 29:413-434. [PMID: 31292712 DOI: 10.1007/s00572-019-00906-1] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Accepted: 06/19/2019] [Indexed: 05/24/2023]
Abstract
Dispersal of mycorrhizal fungi via animals and the importance for the interacting partners' life history as well as for ecosystems is an understudied topic. In this review, we describe the available evidence and the most important knowledge gaps and finally suggest ways to gain the missing information. So far, 33 articles have been published proving a successful transfer of mycorrhizal propagules by animals. The vast majority of research on invertebrates was focused on arbuscular mycorrhizal (AM) fungi, whereas papers on vertebrates (mainly rodents and artiodactyls) equally addressed ectomycorrhizal (ECM) and AM fungi. Effective dispersal has been mostly shown by the successful inoculation of bait plants and less commonly by spore staining or germination tests. Based on the available data and general knowledge on animal lifestyles, collembolans and oribatid mites may be important in transporting ECM fungal propagules by ectozoochory, whereas earthworms, isopods, and millipedes could mainly transfer AM fungal spores in their gut systems. ECM fungal distribution may be affected by mycophagous dipterans and their hymenopteran parasitoids, while slugs, snails, and beetles could transport both mycorrhizal groups. Vertebrates feeding on fruit bodies were shown to disperse mainly ECM fungi, while AM fungi are transported mostly accidentally by herbivores. The important knowledge gaps include insufficient information on dispersal of fungal propagules other than spores, the role of invertebrates in the dispersal of mycorrhizal fungi, the way in which propagules pass through food webs, and the spatial distances reached by different dispersal mechanisms both horizontally and vertically.
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Affiliation(s)
- Martina Vašutová
- Global Change Research Institute, Czech Academy of Sciences, Lipová 1789/9, 37005, České Budějovice, Czech Republic.
- Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 31, 37005, České Budějovice, Czech Republic.
| | - Piotr Mleczko
- Institute of Botany, Faculty of Biology, Jagiellonian University in Kraków, Gronostajowa 3, 30-387, Kraków, Poland
| | - Alvaro López-García
- Department of Biology, University of Copenhagen, Copenhagen, Denmark
- Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín CSIC, Profesor Albareda 1, 18008, Granada, Spain
| | - Irena Maček
- Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, 1000, Ljubljana, Slovenia
- Faculty of Mathematics, Natural Sciences and Information Technologies (FAMNIT), University of Primorska, Glagoljaška 8, 6000, Koper, Slovenia
| | - Gergely Boros
- Department of Zoology and Animal Ecology, Szent István University, Páter Károly u. 1., Gödöllö, Hungary
| | - Jan Ševčík
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Chittussiho 10, 71000, Ostrava, Czech Republic
| | - Saori Fujii
- Insect Ecology Laboratory, Department of Forest Entomology, Forestry and Forest Products Research Institute, 1 Matsunosato, Tsukuba, Ibaraki, 305-8687, Japan
| | | | - Ivan H Tuf
- Department of Ecology and Environmental Sciences, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, 77900, Olomouc, Czech Republic
| | - Elisabeth Hornung
- Department of Ecology, Institute for Biology, University of Veterinary Medicine Budapest, Rottenbiller str. 50, Budapest, 1077, Hungary
| | - Barna Páll-Gergely
- Centre for Agricultural Research, Hungarian Academy of Sciences, Herman Ottó str. 15, Budapest, 1022, Hungary
| | - Rasmus Kjøller
- Department of Biology, University of Copenhagen, Copenhagen, Denmark
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Holighaus G, Rohlfs M. Volatile and non-volatile fungal oxylipins in fungus-invertebrate interactions. FUNGAL ECOL 2019. [DOI: 10.1016/j.funeco.2018.09.005] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Fung SY, Cheong PCH, Tan NH, Ng ST, Tan CS. Nutritional evaluation on Lignosus cameronensis C. S. Tan, a medicinal Polyporaceae. IUBMB Life 2019; 71:821-826. [PMID: 30629799 DOI: 10.1002/iub.2006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2018] [Revised: 12/03/2018] [Accepted: 12/17/2018] [Indexed: 12/21/2022]
Abstract
Sclerotial powder of a cultivated species of the Tiger Milk Mushroom, Lignosus cameronensis was analysed for its nutritional components and compared against species of the same genus, Lignosus rhinocerus and Lignosus tigris. All three species have been used by indigenous tribes in Peninsular Malaysia as medicinal mushrooms. Content of carbohydrate, fibre, mineral, amino acid, palatable index, fat, ash and moisture were determined. L. cameronensis sclerotial material consists of carbohydrate (79.7%), protein (12.4%) and dietary fibre (5.4%) with low fat (1.7%) and no free sugar. It has the highest content of total carbohydrate (791 g kg-1 ), energy value (3,700 kcal kg-1 ) and calcium (0.85 g kg-1 ). The crude protein content (123 g kg-1 ) is comparable to that of L. rhinocerus with its main amino acids consisting of glutamic acid, aspartic acid and leucine. The umami index is determined to be 0.27. The total essential amino acid (45 g kg-1 ) is comparable to that of L. tigris. The main mineral is potassium (1.51 g kg-1 ) and the Na/K ratio was <0.6. Heavy metals such as mercury, cadmium, lead and arsenic were absent. L. cameronensis has the highest amount of food energy, total carbohydrate and calcium compared to those of both L. rhinocerus and L. tigris. The essential amino acids comprised almost 40% of the total amino acid content, slightly more than that reported from sclerotial powder of the L. tigris. © 2019 IUBMB Life, 9999(9999):1-6, 2019.
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Affiliation(s)
- Shin Yee Fung
- Medicinal Mushroom Research Group, Department of Molecular Medicine, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia
| | - Peter Chiew Hing Cheong
- Medicinal Mushroom Research Group, Department of Molecular Medicine, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia
| | - Nget Hong Tan
- Medicinal Mushroom Research Group, Department of Molecular Medicine, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia
| | - Szu Ting Ng
- Ligno Biotech Sdn. Bhd., Seri Kembangan, Selangor, Malaysia
| | - Chon Seng Tan
- Ligno Biotech Sdn. Bhd., Seri Kembangan, Selangor, Malaysia
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Reactive oxygen species induce sclerotial formation in Morchella importuna. Appl Microbiol Biotechnol 2018; 102:7997-8009. [PMID: 29959464 DOI: 10.1007/s00253-018-9104-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Revised: 05/14/2018] [Accepted: 05/15/2018] [Indexed: 10/28/2022]
Abstract
Morels are some of the most highly prized edible and medicinal mushrooms, and the outdoor cultivation has been achieved in China in recent years. Sclerotial formation is one of the most important phases during the morel life cycle, and the number of sclerotia indicates the spawn quality during cultivation. However, the sclerotial formation and differentiation mechanisms are poorly understood. In this study, the sclerotial formation process of Morchella importuna and the effects of reactive oxygen species on scerotial formation were studied. Scerotial formation was defined as five distinctive phases, hypha early, hyphal growth, sclerotial initiation, development, and maturation. The mycelia in the sclerotium-forming area were swollen, darkened, and dense with sclerotial formation, but hydrogen peroxide accumulated in the region lacking sclerotial formation. The expression of all six genes for superoxide dismutases tested increased with sclerotial maturation. A difference in hydrogen peroxide concentration of 20 mM could promote the sclerotial initiation and induce expression of sod genes. The MAPK signaling pathway was activated, and they passed the signal from an area of high oxidative stress to a low area to initiate sclerotial formation. An understanding of the sclerotial formation mechanisms in M. importuna may help to understand the life cycle and facilitate the fruiting body cultivation.
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Obase K, Douhan GW, Matsuda Y, Smith ME. Isolation source matters: sclerotia and ectomycorrhizal roots provide different views of genetic diversity in Cenococcum geophilum. Mycologia 2018; 110:473-481. [PMID: 29923792 DOI: 10.1080/00275514.2018.1463130] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
Cenococcum geophilum forms sclerotia and ectomycorrhizas with host plants in forest soils. We demonstrated the differences in genetic diversity of C. geophilum between cultured isolates from sclerotia and those from ectomycorrhizal roots in the same 73 soil samples based on glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene sequences and newly developed microsatellite markers. Based on GAPDH sequences, 759 cultured isolates (553 from sclerotia and 206 from ectomycorrhizas) were classified into 107 "genotypes" with sequence variation of up to 8.6%. The total number of GAPDH genotypes per soil sample ranged from 1 to 9, but genotypes that were shared between sclerotia and ectomycorrhizas were uncommon (0-3 per soil sample). More than 50% of GAPDH genotypes were unique to one source in most soil samples. Unique GAPDH genotypes were detected from either scleotia or ectomycorrhizal roots in most of the soil samples. Multilocus analysis using nine microsatellite markers provided additional resolution to differentiate fungal individuals and supported the results of GAPDH genotyping. The results indicated that sampling both sclerotia and ectomycorrhizal roots maximizes the detection of diversity at the soil core scale. On the other hand, when all isolates were viewed together, 82 GAPDH genotypes were unique to sclerotia whereas only 6 GAPDH genotypes were unique to ectomycorrhizas. Rarefaction analysis indicated that GAPDH genotypic diversity is significantly higher in sclerotia than ectomycorrhizal roots and the diversity within sclerotia is nearly the same as that of both sclerotia and ectomycorrhizas together. These findings suggest that sampling sclerotia alone is likely to detect the majority of GAPDH genotypes in Cenococcum at the regional scale. When deciding whether to sample sclerotia, ectomycorrhizas, or both types of tissues from Cenococcum, it is critical to consider the spatial scale and also the main questions and hypotheses of the study.
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Affiliation(s)
- Keisuke Obase
- a Microbial Ecology Laboratory, Department of Mushroom Science and Forest Microbiology , Forestry and Forest Products Research Institute , 1 Matsunosato, Tsukuba , Ibaraki 305-8687 , Japan.,b Department of Plant Pathology , University of Florida , 2523 Fifield Hall, Gainesville , Florida 32611-0680
| | - Greg W Douhan
- c Department of Plant Pathology and Microbiology , University of California , Riverside , California 92521.,d Cooperative Extension, Tulare County , University of California , Tulare , California 93274
| | - Yosuke Matsuda
- e Laboratory of Forest Mycology, Graduate School of Bioresources , Mie University , Kurimamachiya 1577, Tsu , Mie 514-8507 , Japan
| | - Matthew E Smith
- b Department of Plant Pathology , University of Florida , 2523 Fifield Hall, Gainesville , Florida 32611-0680
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Pither J, Pickles BJ. The paleosymbiosis hypothesis: host plants can be colonised by root symbionts that have been inactive for centuries to millenia. FEMS Microbiol Ecol 2017; 93:3806672. [PMID: 28486678 DOI: 10.1093/femsec/fix061] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2017] [Accepted: 05/08/2017] [Indexed: 11/14/2022] Open
Abstract
Paleoecologists have speculated that post-glacial migration of tree species could have been facilitated by mycorrhizal symbionts surviving glaciation as resistant propagules belowground. The general premise of this idea, which we call the 'paleosymbiosis hypothesis', is that host plants can access and be colonised by fungal root symbionts that have been inactive for millennia. Here, we explore the plausibility of this hypothesis by synthesising relevant findings from a diverse literature. For example, the paleoecology literature provided evidence of modern roots penetrating paleosols containing ancient (>6000 years) fungal propagules, though these were of unknown condition. With respect to propagule longevity, the available evidence is of mixed quality, but includes convincing examples consistent with the paleosymbiosis hypothesis (i.e. >1000 years viable propagules). We describe symbiont traits and environmental conditions that should favour the development and preservation of an ancient propagule bank, and discuss the implications for our understanding of soil symbiont diversity and ecosystem functioning. We conclude that the paleosymbiosis hypothesis is plausible in locations where propagule deposition and preservation conditions are favourable (e.g. permafrost regions). We encourage future belowground research to consider and explore the potential temporal origins of root symbioses.
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Affiliation(s)
- Jason Pither
- Okanagan Institute for Biodiversity, Resilience, and Ecosystem Services, University of British Columbia, Okanagan campus, ASC 367, 3187 University Way, Kelowna, BC V1V 1V7, Canada
| | - Brian J Pickles
- School of Biological Sciences, University of Reading, Harborne Building, Whiteknights, Reading RG6 8AS, UK
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Intraspecific variation in mycelial growth of Cenococcum geophilum isolates in response to salinity gradients. MYCOSCIENCE 2017. [DOI: 10.1016/j.myc.2017.04.009] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Fan H, Yu G, Liu Y, Zhang X, Liu J, Zhang Y, Rollins JA, Sun F, Pan H. An atypical forkhead-containing transcription factor SsFKH1 is involved in sclerotial formation and is essential for pathogenicity in Sclerotinia sclerotiorum. MOLECULAR PLANT PATHOLOGY 2017; 18:963-975. [PMID: 27353472 PMCID: PMC6638265 DOI: 10.1111/mpp.12453] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2016] [Accepted: 06/24/2016] [Indexed: 05/15/2023]
Abstract
Sclerotinia sclerotiorum (Lib.) de Bary is a necrotrophic plant pathogen with a worldwide distribution. The sclerotia of S. sclerotiorum are pigmented multicellular structures formed from the aggregation of vegetative hyphae. These survival structures play a central role in the life and infection cycles of this pathogen. Here, we characterized an atypical forkhead (FKH)-box-containing protein, SsFKH1, involved in sclerotial development and virulence. To investigate the role of SsFkh1 in S. sclerotiorum, the partial sequence of SsFkh1 was cloned and RNA interference (RNAi)-based gene silencing was employed to alter the expression of SsFkh1. RNA-silenced mutants with significantly reduced SsFkh1 RNA levels exhibited slow hyphal growth and sclerotial developmental defects. In addition, the expression levels of a set of putative melanin biosynthesis-related laccase genes and a polyketide synthase-encoding gene were significantly down-regulated in silenced strains. Disease assays demonstrated that pathogenicity in RNAi-silenced strains was significantly compromised with the development of a smaller infection lesion on tomato leaves. Collectively, the results suggest that SsFkh1 is involved in hyphal growth, virulence and sclerotial formation in S. sclerotiorum.
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Affiliation(s)
- Huidong Fan
- College of Plant SciencesJilin UniversityChangchun130062China
| | - Gang Yu
- College of Plant SciencesJilin UniversityChangchun130062China
| | - Yanzhi Liu
- College of Plant SciencesJilin UniversityChangchun130062China
| | - Xianghui Zhang
- College of Plant SciencesJilin UniversityChangchun130062China
| | - Jinliang Liu
- College of Plant SciencesJilin UniversityChangchun130062China
| | - Yanhua Zhang
- College of Plant SciencesJilin UniversityChangchun130062China
| | | | - Fengjie Sun
- School of Science and TechnologyGeorgia Gwinnett CollegeLawrencevilleGA30024USA
| | - Hongyu Pan
- College of Plant SciencesJilin UniversityChangchun130062China
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Abstract
Decomposer fungi continually deplete the organic resources they inhabit, so successful colonization of new resources is a crucial part of their ecology. Colonization success can be split into (i) the ability to arrive at, gain entry into, and establish within a resource and (ii) the ability to persist within the resource until reproduction and dissemination. Fungi vary in their life history strategies, the three main drivers of which are stress (S-selected), disturbance (ruderal, or R-selected), and incidence of competitors (C-selected); however, fungi often have combinations of characteristics from different strategies. Arrival at a new resource may occur as spores or mycelium, with successful entry and establishment (primary resource capture) within the resource largely dependent on the enzymatic ability of the fungus. The communities that develop in a newly available resource depend on environmental conditions and, in particular, the levels of abiotic stress present (e.g., high temperature, low water availability). Community change occurs when these initial colonizers are replaced by species that are either more combative (secondary resource capture) or better able to tolerate conditions within the resource, either through changing abiotic conditions or due to modification of the resource by the initial colonizers. Competition for territory may involve highly specialized species-specific interactions such as mycoparasitism or may be more general; in both cases combat involves changes in morphology, metabolism, and reactive oxygen species production, and outcomes of these interactions can be altered under different environmental conditions. In summary, community development is not a simple ordered sequence, but a complex ever-changing mosaic.
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Pärtel K, Baral HO, Tamm H, Põldmaa K. Evidence for the polyphyly of Encoelia and Encoelioideae with reconsideration of respective families in Leotiomycetes. FUNGAL DIVERS 2016. [DOI: 10.1007/s13225-016-0370-0] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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50
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Azevedo L, Chagas-Paula DA, Kim H, Roque ACM, Dias KST, Machado JC, Soares MG, Mertens-Talcott SU. White mold (Sclerotinia sclerotiorum), friend or foe: Cytotoxic and mutagenic activities in vitro and in vivo. Food Res Int 2016. [DOI: 10.1016/j.foodres.2015.11.029] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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