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Johnson J, Olson MB, Parker I, Hoffmeister I, Lemkau K. Widespread Production of Polyunsaturated Aldehydes by Benthic Diatoms of the North Pacific Ocean's Salish Sea. J Chem Ecol 2024; 50:290-298. [PMID: 38644438 DOI: 10.1007/s10886-024-01496-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Revised: 03/07/2024] [Accepted: 04/15/2024] [Indexed: 04/23/2024]
Abstract
Diatoms are key primary producers across marine, freshwater, and terrestrial ecosystems. They are responsible for photosynthesis and secondary production that, in part, support complex food webs. Diatoms can produce phytochemicals that have transtrophic ecological effects which increase their competitive fitness. Polyunsaturated aldehydes (PUAs) are one class of diatom-derived phytochemicals that are known to have allelopathic and anti-herbivory properties. The anti-herbivory capability of PUAs results from their negative effect on grazer fecundity. Since their discovery, research has focused on their production by pelagic marine diatoms, and their effects on copepod egg production, hatching success, and juvenile survival and development. Few investigations have explored PUA production by the prolific suite of benthic marine diatoms, despite their importance to coastal trophic systems. In this study, we tested eight species of benthic diatoms for the production of the bioactive PUAs 2,4-heptadienal, 2,4-octadienal, and 2,4-decadienal. Benthic diatom species were isolated from the Salish Sea, an inland sea within the North Pacific ecosystem. All species were found to be producers of at least two PUAs in detectable concentrations, with five species producing all three PUAs in quantifiable concentrations. Our results indicate that production of PUAs from Salish Sea benthic diatoms may be widespread, and thus these compounds may contribute to benthic coastal food web dynamics through heretofore unrecognized pathways. Future studies should expand the geographic scope of investigations into benthic diatom PUA production and explore the effects of benthic diatoms on benthic consumer fecundity.
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Affiliation(s)
- Jeremy Johnson
- Departments of Biology and Chemistry, Western Washington University, Bellingham, Washington, USA.
| | - M Brady Olson
- Departments of Biology and Marine and Coastal Science, Western Washington University, Bellingham, WA, USA
| | - Ian Parker
- Department of Chemistry, Western Washington University, Bellingham, WA, USA
| | - Isaac Hoffmeister
- Department of Marine and Coastal Science, Western Washington University, Bellingham, WA, USA
| | - Karin Lemkau
- Departments of Chemistry and Marine and Coastal Science, Western Washington University, Bellingham, WA, USA
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Edwards BR, Thamatrakoln K, Fredricks HF, Bidle KD, Van Mooy BAS. Viral Infection Leads to a Unique Suite of Allelopathic Chemical Signals in Three Diatom Host-Virus Pairs. Mar Drugs 2024; 22:228. [PMID: 38786618 PMCID: PMC11123003 DOI: 10.3390/md22050228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Revised: 04/27/2024] [Accepted: 05/02/2024] [Indexed: 05/25/2024] Open
Abstract
Ecophysiological stress and the grazing of diatoms are known to elicit the production of chemical defense compounds called oxylipins, which are toxic to a wide range of marine organisms. Here we show that (1) the viral infection and lysis of diatoms resulted in oxylipin production; (2) the suite of compounds produced depended on the diatom host and the infecting virus; and (3) the virus-mediated oxylipidome was distinct, in both magnitude and diversity, from oxylipins produced due to stress associated with the growth phase. We used high-resolution accurate-mass mass spectrometry to observe changes in the dissolved lipidome of diatom cells infected with viruses over 3 to 4 days, compared to diatom cells in exponential, stationary, and decline phases of growth. Three host virus pairs were used as model systems: Chaetoceros tenuissimus infected with CtenDNAV; C. tenuissimus infected with CtenRNAV; and Chaetoceros socialis infected with CsfrRNAV. Several of the compounds that were significantly overproduced during viral infection are known to decrease the reproductive success of copepods and interfere with microzooplankton grazing. Specifically, oxylipins associated with allelopathy towards zooplankton from the 6-, 9-, 11-, and 15-lipogenase (LOX) pathways were significantly more abundant during viral lysis. 9-hydroperoxy hexadecatetraenoic acid was identified as the strongest biomarker for the infection of Chaetoceros diatoms. C. tenuissimus produced longer, more oxidized oxylipins when lysed by CtenRNAV compared to CtenDNAV. However, CtenDNAV caused a more statistically significant response in the lipidome, producing more oxylipins from known diatom LOX pathways than CtenRNAV. A smaller set of compounds was significantly more abundant in stationary and declining C. tenuissimus and C. socialis controls. Two allelopathic oxylipins in the 15-LOX pathway and essential fatty acids, arachidonic acid (ARA), eicosapentaenoic acid (EPA), and docosahexaenoic acid (DHA) were more abundant in the stationary phase than during the lysis of C. socialis. The host-virus pair comparisons underscore the species-level differences in oxylipin production and the value of screening more host-virus systems. We propose that the viral infection of diatoms elicits chemical defense via oxylipins which deters grazing with downstream trophic and biogeochemical effects.
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Affiliation(s)
- Bethanie R. Edwards
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Falmouth, MA 02543, USA; (H.F.F.); (B.A.S.V.M.)
- Department of Earth and Planetary Science, University of California-Berkeley, Berkeley, CA 94720, USA
| | - Kimberlee Thamatrakoln
- Department of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901, USA; (K.T.); (K.D.B.)
| | - Helen F. Fredricks
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Falmouth, MA 02543, USA; (H.F.F.); (B.A.S.V.M.)
| | - Kay D. Bidle
- Department of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901, USA; (K.T.); (K.D.B.)
| | - Benjamin A. S. Van Mooy
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Falmouth, MA 02543, USA; (H.F.F.); (B.A.S.V.M.)
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3
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Liu C, Li L, Yang S, Wang M, Zhang H, Li S. Multi-omic insights into the cellular response of Phaeodactylum tricornutum (Bacillariophyta) strains under grazing pressure. FRONTIERS IN PLANT SCIENCE 2024; 14:1308085. [PMID: 38259919 PMCID: PMC10801743 DOI: 10.3389/fpls.2023.1308085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Accepted: 12/18/2023] [Indexed: 01/24/2024]
Abstract
Background/Aims Phaeodactylum tricornutum, a model organism of diatoms, plays a crucial role in Earth's primary productivity. Investigating its cellular response to grazing pressure is highly significant for the marine ecological environment. Furthermore, the integration of multi-omics approaches has enhanced the understanding of its response mechanism. Methods To assess the molecular and cellular responses of P.tricornutum to grazer presence, we conducted transcriptomic, proteomic, and metabolomic analyses, combined with phenotypic data from previous studies. Sequencing data were obtained by Illumina RNA sequencing, TMT Labeled Quantitative Proteomics and Non-targeted Metabolomics, and WGCNA analysis and statistical analysis were performed. Results Among the differentially expressed genes, we observed complex expression patterns of the core genes involved in the phenotypic changes of P.tricornutum under grazing pressure across different strains and multi-omics datasets. These core genes primarily regulate the levels of various proteins and fatty acids, as well as the cellular response to diverse signals. Conclusion Our research reveals the association of multi-omics in four strains responses to grazing effects in P.tricornutum. Grazing pressure significantly impacted cell growth, fatty acid composition, stress response, and the core genes involved in phenotype transformation.
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Affiliation(s)
| | | | | | | | | | - Si Li
- School of Chemical Engineering, Hebei University of Technology, Tianjin, China
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Wood PL, Wood MD, Kunigelis SC. Pilot Lipidomics Study of Copepods: Investigation of Potential Lipid-Based Biomarkers for the Early Detection and Quantification of the Biological Effects of Climate Change on the Oceanic Food Chain. Life (Basel) 2023; 13:2335. [PMID: 38137936 PMCID: PMC10744631 DOI: 10.3390/life13122335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 11/30/2023] [Accepted: 12/11/2023] [Indexed: 12/24/2023] Open
Abstract
Maintenance of the health of our oceans is critical for the survival of the oceanic food chain upon which humanity is dependent. Zooplanktonic copepods are among the most numerous multicellular organisms on earth. As the base of the primary consumer food web, they constitute a major biomass in oceans, being an important food source for fish and functioning in the carbon cycle. The potential impact of climate change on copepod populations is an area of intense study. Omics technologies offer the potential to detect early metabolic alterations induced by the stresses of climate change. One such omics approach is lipidomics, which can accurately quantify changes in lipid pools serving structural, signal transduction, and energy roles. We utilized high-resolution mass spectrometry (≤2 ppm mass error) to characterize the lipidome of three different species of copepods in an effort to identify lipid-based biomarkers of copepod health and viability which are more sensitive than observational tools. With the establishment of such a lipid database, we will have an analytical platform useful for prospectively monitoring the lipidome of copepods in a planned long-term five-year ecological study of climate change on this oceanic sentinel species. The copepods examined in this pilot study included a North Atlantic species (Calanus finmarchicus) and two species from the Gulf of Mexico, one a filter feeder (Acartia tonsa) and one a hunter (Labidocerca aestiva). Our findings clearly indicate that the lipidomes of copepod species can vary greatly, supporting the need to obtain a broad snapshot of each unique lipidome in a long-term multigeneration prospective study of climate change. This is critical, since there may well be species-specific responses to the stressors of climate change and co-stressors such as pollution. While lipid nomenclature and biochemistry are extremely complex, it is not essential for all readers interested in climate change to understand all of the various lipid classes presented in this study. The clear message from this research is that we can monitor key copepod lipid families with high accuracy, and therefore potentially monitor lipid families that respond to environmental perturbations evoked by climate change.
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Affiliation(s)
- Paul L. Wood
- Metabolomics Unit, College of Veterinary Medicine, Lincoln Memorial University, 6965 Cumberland Gap Pkwy., Harrogate, TN 37752, USA
| | - Michael D. Wood
- Child and Adolescent Psychiatry, BC Children’s and Women’s Hospital & Provincial Health Services Authority, Vancouver, BC V5Z 4H4, Canada;
| | - Stan C. Kunigelis
- Imaging and Analysis Center, DeBusk College of Osteopathic Medicine, Lincoln Memorial University, 6965 Cumberland Gap Pkwy., Harrogate, TN 37752, USA;
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Ciarcia R, Longobardi C, Ferrara G, Montagnaro S, Andretta E, Pagnini F, Florio S, Maruccio L, Lauritano C, Damiano S. The Microalga Skeletonema marinoi Induces Apoptosis and DNA Damage in K562 Cell Line by Modulating NADPH Oxidase. Molecules 2022; 27:molecules27238270. [PMID: 36500363 PMCID: PMC9739211 DOI: 10.3390/molecules27238270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 11/22/2022] [Accepted: 11/24/2022] [Indexed: 11/29/2022] Open
Abstract
Chronic myeloid leukemia (CML) is a myeloproliferative disease that activates multiple signaling pathways, causing cells to produce higher levels of reactive oxygen species (ROS). Nicotinamide adenine dinucleotide phosphate (NADPH) oxidases (NOXs) are a major generator of ROS in leukemia, and marine natural products have shown promising activities for the treatment of hematopoietic malignancies. In the present study, we investigated the effect of the marine microalga Skeletonema marinoi (S.M.), a ubiquitous diatom that forms massive blooms in the oceans, on the human leukemia cell line K562. The effects of S.M. extract on cell viability, production of ROS, nitric oxide (NO), and apoptosis were examined. In this preliminary work, S.M. was able to decrease cell viability (p < 0.05) and increase apoptosis levels (p < 0.05) in K562 cells after 48 h of treatment. In addition, the levels of NOX, NO, and malondialdehyde (MDA) were reduced in K562-treated cells (p < 0.05), whereas the levels of SOD, CAT, and GPx increased during treatment (p < 0.05). Finally, analyzing Bax and Bcl-2 expression, we found a significant increase in the proapoptotic protein Bax and a sustained decrease in the antiapoptotic protein Bcl-2 (p < 0.05) in the K562-treated cells.
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Affiliation(s)
- Roberto Ciarcia
- Department of Veterinary Medicine and Animal Productions, University of Naples “Federico II”, Via Delpino n.1, 80137 Naples, Italy
- Correspondence:
| | - Consiglia Longobardi
- Department of Mental, Physical Health and Preventive Medicine, University of Campania “Luigi Vanvitelli”, Largo Madonna delle Grazie n.1, 80138 Naples, Italy
| | - Gianmarco Ferrara
- Department of Veterinary Medicine and Animal Productions, University of Naples “Federico II”, Via Delpino n.1, 80137 Naples, Italy
| | - Serena Montagnaro
- Department of Veterinary Medicine and Animal Productions, University of Naples “Federico II”, Via Delpino n.1, 80137 Naples, Italy
| | - Emanuela Andretta
- Department of Veterinary Medicine and Animal Productions, University of Naples “Federico II”, Via Delpino n.1, 80137 Naples, Italy
| | - Francesco Pagnini
- Department of Medicine and Surgery, Unit of Radiology, University of Parma, Via Università n. 12, 43126 Parma, Italy
| | - Salvatore Florio
- Department of Veterinary Medicine and Animal Productions, University of Naples “Federico II”, Via Delpino n.1, 80137 Naples, Italy
| | - Lucianna Maruccio
- Department of Veterinary Medicine and Animal Productions, University of Naples “Federico II”, Via Delpino n.1, 80137 Naples, Italy
| | - Chiara Lauritano
- Ecosustainable Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Via Acton n. 55, 80133 Naples, Italy
| | - Sara Damiano
- Department of Veterinary Medicine and Animal Productions, University of Naples “Federico II”, Via Delpino n.1, 80137 Naples, Italy
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Deng Y, Vallet M, Pohnert G. Temporal and Spatial Signaling Mediating the Balance of the Plankton Microbiome. ANNUAL REVIEW OF MARINE SCIENCE 2022; 14:239-260. [PMID: 34437810 DOI: 10.1146/annurev-marine-042021-012353] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
The annual patterns of plankton succession in the ocean determine ecological and biogeochemical cycles. The temporally fluctuating interplay between photosynthetic eukaryotes and the associated microbiota balances the composition of aquatic planktonic ecosystems. In addition to nutrients and abiotic factors, chemical signaling determines the outcome of interactions between phytoplankton and their associated microbiomes. Chemical mediators control essential processes, such as the development of key morphological, physiological, behavioral, and life-history traits during algal growth. These molecules thus impact species succession and community composition across time and space in processes that are highlighted in this review. We focus on spatial, seasonal, and physiological dynamics that occur during the early association of algae with bacteria, the exponential growth of a bloom, and its decline and recycling. We also discuss how patterns from field data and global surveys might be linked to the actions of metabolic markers in natural phytoplankton assemblages.
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Affiliation(s)
- Yun Deng
- Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, 07743 Jena, Germany;
| | - Marine Vallet
- Research Group Phytoplankton Community Interactions, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany
| | - Georg Pohnert
- Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, 07743 Jena, Germany;
- Research Group Phytoplankton Community Interactions, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany
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Sabatino V, Orefice I, Marotta P, Ambrosino L, Chiusano ML, d'Ippolito G, Romano G, Fontana A, Ferrante MI. Silencing of a Pseudo-nitzschia arenysensis lipoxygenase transcript leads to reduced oxylipin production and impaired growth. THE NEW PHYTOLOGIST 2022; 233:809-822. [PMID: 34533849 DOI: 10.1111/nph.17739] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Accepted: 09/04/2021] [Indexed: 06/13/2023]
Abstract
Because of their importance as chemical mediators, the presence of a rich and varied family of lipoxygenase (LOX) products, collectively named oxylipins, has been investigated thoroughly in diatoms, and the involvement of these products in important processes such as bloom regulation has been postulated. Nevertheless, little information is available on the enzymes and pathways operating in these protists. Exploiting transcriptome data, we identified and characterized a LOX gene, PaLOX, in Pseudo-nitzschia arenysensis, a marine diatom known to produce different species of oxylipins by stereo- and regio-selective oxidation of eicosapentaenoic acid (EPA) at C12 and C15. PaLOX RNA interference correlated with a decrease of the lipid-peroxidizing activity and oxylipin synthesis, as well as with a reduction of growth of P. arenysensis. In addition, sequence analysis and structure models of the C-terminal part of the predicted protein closely fitted with the data for established LOXs from other organisms. The presence in the genome of a single LOX gene, whose downregulation impairs both 12- and 15-oxylipins synthesis, together with the in silico 3D protein modelling suggest that PaLOX encodes for a 12/15S-LOX with a dual specificity, and provides additional support to the correlation between cell growth and oxylipin biosynthesis in diatoms.
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Affiliation(s)
- Valeria Sabatino
- Stazione Zoologica Anton Dohrn, Villa Comunale 1, Naples, 80121, Italy
| | - Ida Orefice
- Stazione Zoologica Anton Dohrn, Villa Comunale 1, Naples, 80121, Italy
| | - Pina Marotta
- Stazione Zoologica Anton Dohrn, Villa Comunale 1, Naples, 80121, Italy
| | - Luca Ambrosino
- Stazione Zoologica Anton Dohrn, Villa Comunale 1, Naples, 80121, Italy
| | - Maria Luisa Chiusano
- Stazione Zoologica Anton Dohrn, Villa Comunale 1, Naples, 80121, Italy
- Department of Agriculture, Università degli Studi di Napoli Federico II, Portici, 80055, Italy
| | - Giuliana d'Ippolito
- Istituto di Chimica Biomolecolare, Consiglio Nazionale delle Ricerche, Via Campi Flegrei 34, Pozzuoli - Naples, I-80078, Italy
| | - Giovanna Romano
- Stazione Zoologica Anton Dohrn, Villa Comunale 1, Naples, 80121, Italy
| | - Angelo Fontana
- Istituto di Chimica Biomolecolare, Consiglio Nazionale delle Ricerche, Via Campi Flegrei 34, Pozzuoli - Naples, I-80078, Italy
- Laboratory of Bio-Organic Chemistry and Chemical Biology, Dipartimento di Biologia, Università di Napoli "Federico II", Via Cupa Nuova Cinthia 21, Napoli, 80126, Italy
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First Report of OvoA Gene in Marine Arthropods: A New Candidate Stress Biomarker in Copepods. Mar Drugs 2021; 19:md19110647. [PMID: 34822518 PMCID: PMC8623360 DOI: 10.3390/md19110647] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Revised: 11/17/2021] [Accepted: 11/19/2021] [Indexed: 12/16/2022] Open
Abstract
Ovothiol is one of the most powerful antioxidants acting in marine organisms as a defense against oxidative stress during development and in response to environmental cues. The gene involved in the ovothiol biosynthesis, OvoA, is found in almost all metazoans, but open questions existed on its presence among arthropods. Here, using an in silico workflow, we report a single OvoA gene in marine arthropods including copepods, decapods, and amphipods. Phylogenetic analyses indicated that OvoA from marine arthropods separated from the other marine phyla (e.g., Porifera, Mollusca) and divided into two separate branches, suggesting a possible divergence through evolution. In the copepod Calanus finmarchicus, we suggest that OvoA has a defense role in oxidative stress as shown by its high expression in response to a toxic diet and during the copepodite stage, a developmental stage that includes significant morphological changes. Overall, the results of our study open possibilities for the use of OvoA as a biomarker of stress in copepods and possibly also for other marine holozooplankters. The finding of OvoA in copepods is also promising for the drug discovery field, suggesting the possibility of using copepods as a new source of bioactive compounds to be tested in the marine biotechnological sector.
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Glutathione S-Transferases in Marine Copepods. JOURNAL OF MARINE SCIENCE AND ENGINEERING 2021. [DOI: 10.3390/jmse9091025] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
The glutathione S-transferase (GST) is a complex family of phase II detoxification enzymes, known for their ability to catalyze the conjugation of the reduced form of glutathione (GSH) to a wide variety of endogenous and exogenous electrophilic compounds for detoxification purposes. In marine environments, copepods are constantly exposed to multiple exogenous stressors, thus their capability of detoxification is key for survival. Full identification of the GST family in copepods has been limited only to few species. As for insects, the GST family includes a wide range of genes that, based on their cellular localization, can be divided in three classes: cytosolic, microsomal, and mitochondrial. The role of GSTs might have class-specific features, thus understanding the nature of the GST family has become crucial. This paper covers information of the GST activity in marine copepods based on studies investigating gene expression, protein content, and enzymatic activity. Using published literature and mining new publicly available transcriptomes, we characterized the multiplicity of the GST family in copepods from different orders and families, highlighting the possible role of these genes as biomarker for ocean health status monitoring.
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Saide A, Damiano S, Ciarcia R, Lauritano C. Promising Activities of Marine Natural Products against Hematopoietic Malignancies. Biomedicines 2021; 9:645. [PMID: 34198841 PMCID: PMC8228764 DOI: 10.3390/biomedicines9060645] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 05/31/2021] [Accepted: 06/01/2021] [Indexed: 02/06/2023] Open
Abstract
According to the WHO classification of tumors, more than 150 typologies of hematopoietic and lymphoid tumors exist, and most of them remain incurable diseases that require innovative approaches to improve therapeutic outcome and avoid side effects. Marine organisms represent a reservoir of novel bioactive metabolites, but they are still less studied compared to their terrestrial counterparts. This review is focused on marine natural products with anticancer activity against hematological tumors, highlighting recent advances and possible perspectives. Until now, there are five commercially available marine-derived compounds for the treatment of various hematopoietic cancers (e.g., leukemia and lymphoma), two molecules in clinical trials, and series of compounds and/or extracts from marine micro- and macroorganisms which have shown promising properties. In addition, the mechanisms of action of several active compounds and extracts are still unknown and require further study. The continuous upgrading of omics technologies has also allowed identifying enzymes with possible bioactivity (e.g., l-asparaginase is currently used for the treatment of leukemia) or the enzymes involved in the synthesis of bioactive secondary metabolites which can be the target of heterologous expression and genetic engineering.
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Affiliation(s)
- Assunta Saide
- Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy;
| | - Sara Damiano
- Department of Veterinary Medicine and Animal Productions, University of Naples “Federico II”, 80137 Naples, Italy;
| | - Roberto Ciarcia
- Department of Veterinary Medicine and Animal Productions, University of Naples “Federico II”, 80137 Naples, Italy;
| | - Chiara Lauritano
- Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy;
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Pilecky M, Závorka L, Arts MT, Kainz MJ. Omega-3 PUFA profoundly affect neural, physiological, and behavioural competences - implications for systemic changes in trophic interactions. Biol Rev Camb Philos Soc 2021; 96:2127-2145. [PMID: 34018324 DOI: 10.1111/brv.12747] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Revised: 05/09/2021] [Accepted: 05/11/2021] [Indexed: 01/01/2023]
Abstract
In recent decades, much conceptual thinking in trophic ecology has been guided by theories of nutrient limitation and the flow of elements, such as carbon and nitrogen, within and among ecosystems. More recently, ecologists have also turned their attention to examining the value of specific dietary nutrients, in particular polyunsaturated fatty acids (PUFA), among which the omega-3 PUFA, especially eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) play a central role as essential components of neuronal cell membranes in many organisms. This review focuses on a new neuro-ecological approach stemming from the biochemical (mechanistic) and physiological (functional) role of DHA in neuronal cell membranes, in particular in conjunction with G-protein coupled receptors (GPCRs). We link the co-evolution of these neurological functions to metabolic dependency on dietary omega-3 PUFA. We outline ways in which deficiencies in dietary DHA supply may affect, cognition, vision, and behaviour, and ultimately, the biological fitness of consumers. We then review emerging evidence that changes in access to dietary omega-3 PUFA may ultimately have profound impacts on trophic interactions leading to potential changes in community structure and ecosystem functioning that, in turn, may affect the supply of DHA within and across ecosystems, including the supply for human consumption.
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Affiliation(s)
- Matthias Pilecky
- WasserCluster Lunz - Biologische Station, Inter-University Center for Aquatic Ecosystem Research, Dr. Carl-Kupelwieser Promenade 5, Lunz am See, 3293, Austria.,Department of Biomedical Research, Donau-Universität Krems, Dr. Karl Dorrek-Straße 30, Krems, 3500, Austria
| | - Libor Závorka
- WasserCluster Lunz - Biologische Station, Inter-University Center for Aquatic Ecosystem Research, Dr. Carl-Kupelwieser Promenade 5, Lunz am See, 3293, Austria
| | - Michael T Arts
- Department of Chemistry and Biology, Ryerson University, 350 Victoria St, Toronto, ON, M5B 2K3, Canada
| | - Martin J Kainz
- WasserCluster Lunz - Biologische Station, Inter-University Center for Aquatic Ecosystem Research, Dr. Carl-Kupelwieser Promenade 5, Lunz am See, 3293, Austria.,Department of Biomedical Research, Donau-Universität Krems, Dr. Karl Dorrek-Straße 30, Krems, 3500, Austria
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12
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Unlocking the Health Potential of Microalgae as Sustainable Sources of Bioactive Compounds. Int J Mol Sci 2021; 22:ijms22094383. [PMID: 33922258 PMCID: PMC8122763 DOI: 10.3390/ijms22094383] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 04/14/2021] [Accepted: 04/18/2021] [Indexed: 12/15/2022] Open
Abstract
Microalgae are known to produce a plethora of compounds derived from the primary and secondary metabolism. Different studies have shown that these compounds may have allelopathic, antimicrobial, and antipredator activities. In addition, in vitro and in vivo screenings have shown that several compounds have interesting bioactivities (such as antioxidant, anti-inflammatory, anticancer, and antimicrobial) for the possible prevention and treatment of human pathologies. Additionally, the enzymatic pathways responsible for the synthesis of these compounds, and the targets and mechanisms of their action have also been investigated for a few species. However, further research is necessary for their full exploitation and possible pharmaceutical and other industrial applications. Here, we review the current knowledge on the chemical characteristics, biological activities, mechanism of action, and the enzymes involved in the synthesis of microalgal metabolites with potential benefits for human health.
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Effects of temperature and phytoplankton community composition on subitaneous and resting egg production rates of Acartia omorii in Tokyo Bay. Sci Rep 2021; 11:7959. [PMID: 33846414 PMCID: PMC8041874 DOI: 10.1038/s41598-021-86976-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Accepted: 03/23/2021] [Indexed: 02/01/2023] Open
Abstract
To clarify the effects of temperature and phytoplankton community composition on Acartia omorii (Copepoda: Calanoida) egg production, its abundance and egg production rates were investigated from 2016 to 2018 in Tokyo Bay, Japan. Abundance was high from March to May (> 3.0 × 104 individuals m-3) and low or undetected from late June to December (≤ 0.4 × 104 individuals m-3). In 2018, most eggs were subitaneous until April; diapause eggs appeared in May when the water temperature exceeded 20 °C. The weight-specific egg production rate (SEPR, Cegg Cfemale-1 day-1) had two peaks. In the first peak in January, > 90% of eggs were subitaneous; in contrast, in the second peak in May, 60% of eggs were unhatched, including diapause eggs. The first peak of subitaneous eggs may contribute to planktonic population development from March to May. In contrast the second peak of diapause eggs probably enhances their recurrence in the next winter. Multiple regression analysis revealed that subitaneous SEPR showed a negative response, whereas diapause SEPR showed a positive response to temperature. Subitaneous SEPR positively correlated with the proportion of small diatoms in phytoplankton carbon biomass, whereas unhatched SEPR positively correlated with the proportion of inedible preys in large diatoms and dinoflagellates. Edible diatoms may induce subitaneous egg production, whereas low-food availability may induce diapause egg production. These results suggest that phytoplankton composition and water temperature have strong impacts on the dynamics of A. omorii via egg production.
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Degraeve-Guilbault C, Pankasem N, Gueirrero M, Lemoigne C, Domergue F, Kotajima T, Suzuki I, Joubès J, Corellou F. Temperature Acclimation of the Picoalga Ostreococcus tauri Triggers Early Fatty-Acid Variations and Involves a Plastidial ω3-Desaturase. FRONTIERS IN PLANT SCIENCE 2021; 12:639330. [PMID: 33815446 PMCID: PMC8018280 DOI: 10.3389/fpls.2021.639330] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2020] [Accepted: 02/19/2021] [Indexed: 05/07/2023]
Abstract
Alteration of fatty-acid unsaturation is a universal response to temperature changes. Marine microalgae display the largest diversity of polyunsaturated fatty-acid (PUFA) whose content notably varies according to temperature. The physiological relevance and the molecular mechanisms underlying these changes are however, still poorly understood. The ancestral green picoalga Ostreococcus tauri displays original lipidic features that combines PUFAs from two distinctive microalgal lineages (Chlorophyceae, Chromista kingdom). In this study, optimized conditions were implemented to unveil early fatty-acid and desaturase transcriptional variations upon chilling and warming. We further functionally characterized the O. tauri ω3-desaturase which is closely related to ω3-desaturases from Chromista species. Our results show that the overall omega-3 to omega-6 ratio is swiftly and reversibly regulated by temperature variations. The proportion of the peculiar 18:5 fatty-acid and temperature are highly and inversely correlated pinpointing the importance of 18:5 temperature-dependent variations across kingdoms. Chilling rapidly and sustainably up-regulated most desaturase genes. Desaturases involved in the regulation of the C18-PUFA pool as well as the Δ5-desaturase appear to be major transcriptional targets. The only ω3-desaturase candidate, related to ω3-desaturases from Chromista species, is localized at chloroplasts in Nicotiana benthamiana and efficiently performs ω3-desaturation of C18-PUFAs in Synechocystis sp. PCC6803. Overexpression in the native host further unveils a broad impact on plastidial and non-plastidial glycerolipids illustrated by the alteration of omega-3/omega-6 ratio in C16-PUFA and VLC-PUFA pools. Global glycerolipid features of the overexpressor recall those of chilling acclimated cells.
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Affiliation(s)
| | - Nattiwong Pankasem
- School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
| | - Maurean Gueirrero
- Univ. Bordeaux, CNRS, Laboratoire de Biogenèse membranaire, UMR 5200, Villenave d’Ornon, France
| | - Cécile Lemoigne
- Univ. Bordeaux, CNRS, Laboratoire de Biogenèse membranaire, UMR 5200, Villenave d’Ornon, France
| | - Frédéric Domergue
- Univ. Bordeaux, CNRS, Laboratoire de Biogenèse membranaire, UMR 5200, Villenave d’Ornon, France
| | - Tomonori Kotajima
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
| | - Iwane Suzuki
- Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
| | - Jérôme Joubès
- Univ. Bordeaux, CNRS, Laboratoire de Biogenèse membranaire, UMR 5200, Villenave d’Ornon, France
| | - Florence Corellou
- Univ. Bordeaux, CNRS, Laboratoire de Biogenèse membranaire, UMR 5200, Villenave d’Ornon, France
- *Correspondence: Florence Corellou,
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Lauritano C, Ianora A. Chemical Defense in Marine Organisms. Mar Drugs 2020; 18:md18100518. [PMID: 33080956 PMCID: PMC7589352 DOI: 10.3390/md18100518] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Accepted: 10/14/2020] [Indexed: 01/17/2023] Open
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16
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Russo E, Lauritano C, d'Ippolito G, Fontana A, Sarno D, von Elert E, Ianora A, Carotenuto Y. RNA-Seq and differential gene expression analysis in Temora stylifera copepod females with contrasting non-feeding nauplii survival rates: an environmental transcriptomics study. BMC Genomics 2020; 21:693. [PMID: 33023465 PMCID: PMC7541278 DOI: 10.1186/s12864-020-07112-w] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Accepted: 09/29/2020] [Indexed: 12/30/2022] Open
Abstract
Background Copepods are fundamental components of pelagic food webs, but reports on how molecular responses link to reproductive success in natural populations are still scarce. We present a de novo transcriptome assembly and differential expression (DE) analysis in Temora stylifera females collected in the Gulf of Naples, Mediterranean Sea, where this copepod dominates the zooplankton community. High-Throughput RNA-Sequencing and DE analysis were performed from adult females collected on consecutive weeks (May 23rd and 30th 2017), because opposite naupliar survival rates were observed. We aimed at detecting key genes that may have influenced copepod reproductive potential in natural populations and whose expression was potentially affected by phytoplankton-derived oxylipins, lipoxygenase-derived products strongly impacting copepod naupliar survival. Results On the two sampling dates, temperature, salinity, pH and oxygen remained stable, while variations in phytoplankton cell concentration, oxylipin concentration and oxylipin-per-diatom-cell production were observed. T. stylifera naupliar survival was 25% on May 23rd and 93% on May 30th. De novo assembly generated 268,665 transcripts (isoforms) and 120,749 unique ‘Trinity predicted genes’ (unigenes), of which 50% were functionally annotated. Out of the 331 transcript isoforms differentially expressed between the two sampling dates, 119 sequences were functionally annotated (58 up- and 61 down-regulated). Among predicted genes (unigenes), 144 sequences were differentially expressed and 31 (6 up-regulated and 25 down-regulated) were functionally annotated. Most of the significantly down-regulated unigenes and isoforms were A5 Putative Odorant Binding Protein (Obp). Other differentially expressed sequences (isoforms and unigenes) related to developmental metabolic processes, protein ubiquitination, response to stress, oxidation-reduction reactions and hydrolase activities. DE analysis was validated through Real Time-quantitative PCR of 9 unigenes and 3 isoforms. Conclusions Differential expression of sequences involved in signal detection and transduction, cell differentiation and development offered a functional interpretation to the maternally-mediated low naupliar survival rates observed in samples collected on May 23rd. Down-regulation of A5 Obp along with higher quantities of oxylipins-per-litre and oxylipins-per-diatom-cell observed on May 23rd could suggest oxylipin-mediated impairment of naupliar survival in natural populations of T. stylifera. Our results may help identify biomarker genes explaining variations in copepod reproductive responses at a molecular level.
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Affiliation(s)
- Ennio Russo
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy.,Consiglio Nazionale delle Ricerche, Institute of Biomolecular Chemistry, Via Campi Flegrei 34, 80078, Pozzuoli, Italy
| | - Chiara Lauritano
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy
| | - Giuliana d'Ippolito
- Consiglio Nazionale delle Ricerche, Institute of Biomolecular Chemistry, Via Campi Flegrei 34, 80078, Pozzuoli, Italy
| | - Angelo Fontana
- Consiglio Nazionale delle Ricerche, Institute of Biomolecular Chemistry, Via Campi Flegrei 34, 80078, Pozzuoli, Italy
| | - Diana Sarno
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy
| | - Eric von Elert
- Universität zu Köln, Aquatic Chemical Ecology Group, Zülpicher Straβe 47b, D-50674, Cologne, Germany
| | - Adrianna Ianora
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy
| | - Ylenia Carotenuto
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy.
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17
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Asai S, Sanges R, Lauritano C, Lindeque PK, Esposito F, Ianora A, Carotenuto Y. De Novo Transcriptome Assembly and Gene Expression Profiling of the Copepod Calanus helgolandicus Feeding on the PUA-Producing Diatom Skeletonema marinoi. Mar Drugs 2020; 18:md18080392. [PMID: 32727111 PMCID: PMC7460014 DOI: 10.3390/md18080392] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Revised: 07/21/2020] [Accepted: 07/23/2020] [Indexed: 12/13/2022] Open
Abstract
Diatoms are the dominant component of the marine phytoplankton. Several diatoms produce secondary metabolites, namely oxylipins, with teratogenic effects on their main predators, crustacean copepods. Our study reports the de novo assembled transcriptome of the calanoid copepod Calanus helgolandicus feeding on the oxylipin-producing diatom Skeletonema marinoi. Differential expression analysis was also performed between copepod females exposed to the diatom and the control flagellate Prorocentrum minimum, which does not produce oxylipins. Our results showed that transcripts involved in carbohydrate, amino acid, folate and methionine metabolism, embryogenesis, and response to stimulus were differentially expressed in the two conditions. Expression of 27 selected genes belonging to these functional categories was also analyzed by RT-qPCR in C. helgolandicus females exposed to a mixed solution of the oxylipins heptadienal and octadienal at the concentration of 10 µM, 15 µM, and 20 µM. The results confirmed differential expression analysis, with up-regulation of genes involved in stress response and down-regulation of genes associated with folate and methionine metabolism, embryogenesis, and signaling. Overall, we offer new insights on the mechanism of action of oxylipins on maternally-induced embryo abnormality. Our results may also help identify biomarker genes associated with diatom-related reproductive failure in the natural copepod population at sea.
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Affiliation(s)
- Sneha Asai
- Integrative Marine Ecology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy; (S.A.); (R.S.)
| | - Remo Sanges
- Integrative Marine Ecology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy; (S.A.); (R.S.)
- Area of Neuroscience, Scuola Internazionale Superiore di Studi Avanzati (SISSA), 34136 Trieste, Italy
| | - Chiara Lauritano
- Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy; (C.L.); (F.E.); (A.I.)
| | | | - Francesco Esposito
- Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy; (C.L.); (F.E.); (A.I.)
| | - Adrianna Ianora
- Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy; (C.L.); (F.E.); (A.I.)
| | - Ylenia Carotenuto
- Integrative Marine Ecology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy; (S.A.); (R.S.)
- Correspondence:
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18
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Multiple Roles of Diatom-Derived Oxylipins within Marine Environments and Their Potential Biotechnological Applications. Mar Drugs 2020; 18:md18070342. [PMID: 32629777 PMCID: PMC7401250 DOI: 10.3390/md18070342] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Revised: 06/22/2020] [Accepted: 06/24/2020] [Indexed: 02/07/2023] Open
Abstract
The chemical ecology of marine diatoms has been the subject of several studies in the last decades, due to the discovery of oxylipins with multiple simultaneous functions including roles in chemical defence (antipredator, allelopathic and antibacterial compounds) and/or cell-to-cell signalling. Diatoms represent a fundamental compartment of marine ecosystems because they contribute to about 45% of global primary production even if they represent only 1% of the Earth’s photosynthetic biomass. The discovery that they produce several toxic metabolites deriving from the oxidation of polyunsaturated fatty acids, known as oxylipins, has changed our perspectives about secondary metabolites shaping plant–plant and plant–animal interactions in the oceans. More recently, their possible biotechnological potential has been evaluated, with promising results on their potential as anticancer compounds. Here, we focus on some recent findings in this field obtained in the last decade, investigating the role of diatom oxylipins in cell-to-cell communication and their negative impact on marine biota. Moreover, we also explore and discuss the possible biotechnological applications of diatom oxylipins.
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19
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Diatom-Derived Polyunsaturated Aldehydes Are Unlikely to Influence the Microbiota Composition of Laboratory-Cultured Diatoms. Life (Basel) 2020; 10:life10030029. [PMID: 32213870 PMCID: PMC7151586 DOI: 10.3390/life10030029] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2020] [Revised: 02/18/2020] [Accepted: 03/20/2020] [Indexed: 01/30/2023] Open
Abstract
Diatom-derived oxylipins, including polyunsaturated aldehydes (PUA), are considered to have infochemical, allelochemical and bacteriostatic properties, with plausible roles as grazing deterrents and regulators of inter- and intraspecific competition. However, the extent and mechanisms of how PUA influence diatom–bacteria interactions remain unresolved. In this study, impacts on the diversity of the associated bacterial communities (microbiota) of two contrasting Skeletonema marinoi strains (a PUA and a non-PUA producer) were investigated under three nitrate conditions in batch culture. Further, the response of the culture microbiota was studied when spiked with PUA at ecologically relevant concentrations (86nM octadienal and 290nM heptadienal). Of the 741 identified OTUs, Proteobacteria was the most abundant phylum (62.10%), followed by Bacteroidetes (12.33%) and Firmicutes (6.11%). Escherichia/Shigella were the most abundant genera for all treatments. Similar communities were present in both spiked and non-spiked cultures suggesting they can tolerate PUA exposure at realistic concentrations. This study suggests that PUA are not major drivers of diatom–bacteria interactions in laboratory cultures.
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20
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Esposito R, Ruocco N, Albarano L, Ianora A, Manfra L, Libralato G, Costantini M. Combined Effects of Diatom-Derived Oxylipins on the Sea Urchin Paracentrotus lividus. Int J Mol Sci 2020; 21:ijms21030719. [PMID: 31979078 PMCID: PMC7036778 DOI: 10.3390/ijms21030719] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Revised: 01/13/2020] [Accepted: 01/20/2020] [Indexed: 02/06/2023] Open
Abstract
Oxylipins are diatom-derived secondary metabolites, deriving from the oxidation of polyunsatured fatty acids that are released from cell membranes after cell damage or senescence of these single-celled algae. Previous results revealed harmful toxic effects of polyunsaturated aldehydes (PUAs) and hydroxyacids (HEPEs) on sea urchin Paracentrotus lividus embryonic development by testing individual compounds and mixtures of the same chemical group. Here, we investigated the combined effects of these compounds on sea urchin development at the morphological and molecular level for the first time. Our results demonstrated that oxylipin mixtures had stronger effects on sea urchin embryos compared with individual compounds, confirming that PUAs induce malformations and HEPEs cause developmental delay. This harmful effect was also confirmed by molecular analysis. Twelve new genes, involved in stress response and embryonic developmental processes, were isolated from the sea urchin P. lividus; these genes were found to be functionally interconnected with 11 genes already identified as a stress response of P. lividus embryos to single oxylipins. The expression levels of most of the analyzed genes targeted by oxylipin mixtures were involved in stress, skeletogenesis, development/differentiation, and detoxification processes. This work has important ecological implications, considering that PUAs and HEPEs represent the most abundant oxylipins in bloom-forming diatoms, opening new perspectives in understanding the molecular pathways activated by sea urchins exposed to diatom oxylipins.
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Affiliation(s)
- Roberta Esposito
- Department of Marine Biotechnology, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy; (R.E.); (N.R.); (L.A.); (A.I.); (L.M.); (G.L.)
| | - Nadia Ruocco
- Department of Marine Biotechnology, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy; (R.E.); (N.R.); (L.A.); (A.I.); (L.M.); (G.L.)
| | - Luisa Albarano
- Department of Marine Biotechnology, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy; (R.E.); (N.R.); (L.A.); (A.I.); (L.M.); (G.L.)
- Department of Biology, University of Naples Federico II, Complesso Universitario di Monte Sant’Angelo, Via Cinthia 21, 80126 Napoli, Italy
| | - Adrianna Ianora
- Department of Marine Biotechnology, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy; (R.E.); (N.R.); (L.A.); (A.I.); (L.M.); (G.L.)
| | - Loredana Manfra
- Department of Marine Biotechnology, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy; (R.E.); (N.R.); (L.A.); (A.I.); (L.M.); (G.L.)
- Institute for Environmental Protection and Research (ISPRA), 00144 Rome, Italy
| | - Giovanni Libralato
- Department of Marine Biotechnology, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy; (R.E.); (N.R.); (L.A.); (A.I.); (L.M.); (G.L.)
- Department of Biology, University of Naples Federico II, Complesso Universitario di Monte Sant’Angelo, Via Cinthia 21, 80126 Napoli, Italy
| | - Maria Costantini
- Department of Marine Biotechnology, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy; (R.E.); (N.R.); (L.A.); (A.I.); (L.M.); (G.L.)
- Correspondence: ; Tel.: +39-081-5833-3285
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21
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Johnson MD, Edwards BR, Beaudoin DJ, Van Mooy BAS, Vardi A. Nitric oxide mediates oxylipin production and grazing defense in diatoms. Environ Microbiol 2019; 22:629-645. [PMID: 31782207 DOI: 10.1111/1462-2920.14879] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Revised: 11/07/2019] [Accepted: 11/21/2019] [Indexed: 11/28/2022]
Abstract
Diatom blooms are important features of productive marine ecosystems and are known to support higher trophic levels. However, when stressed or wounded, diatoms can produce oxylipin molecules known to inhibit the reproduction and development of copepods and decrease microzooplankton growth rates. Using oxylipin chemical treatments, lipidomic analysis and functional genomic approaches, we provide evidence that nitric oxide (NO) and oxylipin signalling pathways in diatoms respond to protist grazers, resulting in increased defence fitness and survival. Exposure of the diatom Phaeodactylum tricornutum to the dinoflagellate Oxyrrhis marina resulted in NO production by P. tricornutum and pronounced change in its dissolved oxylipin profile. Experimentally elevating levels of NO also resulted in increased oxylipin production, and lower overall grazing rates. Furthermore, O. marina preferentially grazed on P. tricornutum prey with lower levels of NO, suggesting that this molecule and its effect on oxylipin pathways play a key role in prey selection. Exposure of O. marina grazing on P. tricornutum to exogenous oxylipins also decreased grazing rates, which is consistent with a grazing deterrence role for these molecules. These results suggest that NO and oxylipin production help to structure diatom communities, in part by modulating interactions with microzooplankton predators.
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Affiliation(s)
- Matthew D Johnson
- Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, 02543, USA
| | - Bethanie R Edwards
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, 02543, USA
| | - David J Beaudoin
- Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, 02543, USA
| | - Benjamin A S Van Mooy
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, 02543, USA
| | - Assaf Vardi
- Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 76100, Israel
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22
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Russo E, d'Ippolito G, Fontana A, Sarno D, D'Alelio D, Busseni G, Ianora A, von Elert E, Carotenuto Y. Density-dependent oxylipin production in natural diatom communities: possible implications for plankton dynamics. ISME JOURNAL 2019; 14:164-177. [PMID: 31611654 PMCID: PMC6908693 DOI: 10.1038/s41396-019-0518-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2019] [Revised: 08/30/2019] [Accepted: 09/04/2019] [Indexed: 01/17/2023]
Abstract
Oxylipins are important signal transduction lipoxygenase-derived products of fatty acids that regulate a variety of physiological and pathological processes in plants and animals. In marine diatoms, these molecules can be highly bioactive, impacting zooplankton grazers, bacteria and other phytoplankton. However, the ultimate cause for oxylipin production in diatoms is still poorly understood, from an evolutionary perspective. Here we analysed production of particulate linear oxygenated fatty acids (LOFAs, previously named non-volatile oxylipins) from natural phytoplankton collected weekly for 1 year. We demonstrate for the first time that diatoms are the main LOFA producers in natural phytoplankton assemblages. Interestingly, LOFA-per-cell production decreased with increasing diatom density and was not due to major changes in diatom community composition. An inverse relation was confirmed at a global scale by analysing diatom lipoxygenase unigenes and metagenomes from Tara Oceans datasets. A network analysis suggested that different LOFAs could contribute to modulate co-variations of different diatom taxa. Overall, we offer new insights in diatom chemical ecology, possibly explaining the evolution of oxylipin synthesis in diatoms.
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Affiliation(s)
- Ennio Russo
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, 80121, Napoli, Italy
| | - Giuliana d'Ippolito
- Consiglio Nazionale delle Ricerche, Institute of Bio-molecular Chemistry, Via Campi Flegrei 34, 80078, Pozzuoli, Italy
| | - Angelo Fontana
- Consiglio Nazionale delle Ricerche, Institute of Bio-molecular Chemistry, Via Campi Flegrei 34, 80078, Pozzuoli, Italy
| | - Diana Sarno
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, 80121, Napoli, Italy
| | - Domenico D'Alelio
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, 80121, Napoli, Italy
| | - Greta Busseni
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, 80121, Napoli, Italy
| | - Adrianna Ianora
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, 80121, Napoli, Italy
| | - Eric von Elert
- Aquatic Chemical Ecology Group, Institute for Zoology, Universität zu Köln, Zülpicher Straße 47b, D-50674, Köln, Germany
| | - Ylenia Carotenuto
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, 80121, Napoli, Italy.
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23
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Vingiani GM, De Luca P, Ianora A, Dobson ADW, Lauritano C. Microalgal Enzymes with Biotechnological Applications. Mar Drugs 2019; 17:md17080459. [PMID: 31387272 PMCID: PMC6723882 DOI: 10.3390/md17080459] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Revised: 07/31/2019] [Accepted: 08/01/2019] [Indexed: 12/26/2022] Open
Abstract
Enzymes are essential components of biological reactions and play important roles in the scaling and optimization of many industrial processes. Due to the growing commercial demand for new and more efficient enzymes to help further optimize these processes, many studies are now focusing their attention on more renewable and environmentally sustainable sources for the production of these enzymes. Microalgae are very promising from this perspective since they can be cultivated in photobioreactors, allowing the production of high biomass levels in a cost-efficient manner. This is reflected in the increased number of publications in this area, especially in the use of microalgae as a source of novel enzymes. In particular, various microalgal enzymes with different industrial applications (e.g., lipids and biofuel production, healthcare, and bioremediation) have been studied to date, and the modification of enzymatic sequences involved in lipid and carotenoid production has resulted in promising results. However, the entire biosynthetic pathways/systems leading to synthesis of potentially important bioactive compounds have in many cases yet to be fully characterized (e.g., for the synthesis of polyketides). Nonetheless, with recent advances in microalgal genomics and transcriptomic approaches, it is becoming easier to identify sequences encoding targeted enzymes, increasing the likelihood of the identification, heterologous expression, and characterization of these enzymes of interest. This review provides an overview of the state of the art in marine and freshwater microalgal enzymes with potential biotechnological applications and provides future perspectives for this field.
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Affiliation(s)
- Giorgio Maria Vingiani
- Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, CAP80121 (NA) Villa Comunale, Italy
| | - Pasquale De Luca
- Research Infrastructure for Marine Biological Resources Department, Stazione Zoologica Anton Dohrn, CAP80121 (NA) Villa Comunale, Italy
| | - Adrianna Ianora
- Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, CAP80121 (NA) Villa Comunale, Italy
| | - Alan D W Dobson
- School of Microbiology, University College Cork, College Road, T12 YN60 Cork, Ireland
- Environmental Research Institute, University College Cork, Lee Road, T23XE10 Cork, Ireland
| | - Chiara Lauritano
- Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, CAP80121 (NA) Villa Comunale, Italy.
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Tarrant AM, Nilsson B, Hansen BW. Molecular physiology of copepods - from biomarkers to transcriptomes and back again. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 2019; 30:230-247. [DOI: 10.1016/j.cbd.2019.03.005] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2018] [Revised: 03/14/2019] [Accepted: 03/16/2019] [Indexed: 12/31/2022]
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Casabianca S, Capellacci S, Giacobbe MG, Dell'Aversano C, Tartaglione L, Varriale F, Narizzano R, Risso F, Moretto P, Dagnino A, Bertolotto R, Barbone E, Ungaro N, Penna A. Plastic-associated harmful microalgal assemblages in marine environment. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 244:617-626. [PMID: 30384067 DOI: 10.1016/j.envpol.2018.09.110] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Revised: 09/19/2018] [Accepted: 09/21/2018] [Indexed: 05/20/2023]
Abstract
Plastic debris carry fouling a variety of class-size organisms, among them harmful microorganisms that potentially play a role in the dispersal of allochthonous species and toxic compounds with ecological impacts on the marine environment and human health. We analyzed samples of marine plastics floating at the sea surface using a molecular qPCR assay to quantify the attached microalgal taxa, in particular, harmful species. Diatoms were the most abundant group of plastic colonizers with maximum abundance of 8.2 × 104 cells cm-2 of plastics, the maximum abundance of dinoflagellates amounted to 1.1 × 103 cells cm-2 of plastics. The most abundant harmful microalgal taxon was the diatom Pseudo-nitzschia spp., including at least 12 toxic species, and the dinoflagellate Ostreopsis cf. ovata with 6606 and 259 cells cm-2, respectively. The abundance of other harmful microalgal species including the toxic allochthonous dinoflagellate Alexandrium pacificum ranged from 1 to 73 cells cm-2. In the present study, a direct relationship between the abundance of harmful algal species colonizing the plastic substrates and their toxin production was found. The levels of potential toxins on plastic samples ranged from 101 to 102 ng cm-2, considering the various toxin families produced by the colonized harmful microalgal species. We also measured the rate of adhesion by several target microalgal species. It ranged from 1.8 to 0.3 day-1 demonstrating the capacity of plastic substrate colonizing rapidly by microalgae. The present study reports the first estimates of molecular quantification of microorganisms including toxin producing species that can colonize plastics. Such findings provide important insights for improving the monitoring practice of plastics and illustrate how the epi-plastic community can exacerbate the harmful effects of plastics by dispersal, acting as an alien and toxic species carrier and potentially being ingested through the marine trophic web.
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Affiliation(s)
- Silvia Casabianca
- Department of Biomolecular Sciences, University of Urbino, 61121, Pesaro, Italy; CONISMA, Consorzio Interuniversitario Scienze del Mare, 00184, Roma, Italy
| | - Samuela Capellacci
- Department of Biomolecular Sciences, University of Urbino, 61121, Pesaro, Italy; CONISMA, Consorzio Interuniversitario Scienze del Mare, 00184, Roma, Italy
| | - Maria Grazia Giacobbe
- IRBIM CNR, Istituto per le Risorse Biologiche e le Biotecnologie Marine, Consiglio Nazionale delle Ricerche, Messina, Italy
| | - Carmela Dell'Aversano
- Department of Pharmacy, University of Napoli Federico II, 80131, Napoli, Italy; CONISMA, Consorzio Interuniversitario Scienze del Mare, 00184, Roma, Italy
| | - Luciana Tartaglione
- Department of Pharmacy, University of Napoli Federico II, 80131, Napoli, Italy; CONISMA, Consorzio Interuniversitario Scienze del Mare, 00184, Roma, Italy
| | - Fabio Varriale
- Department of Pharmacy, University of Napoli Federico II, 80131, Napoli, Italy
| | - Riccardo Narizzano
- Agenzia Regionale per la Protezione dell'Ambiente Ligure (ARPAL), Genova, Italy
| | - Fulvia Risso
- Agenzia Regionale per la Protezione dell'Ambiente Ligure (ARPAL), Genova, Italy
| | - Paolo Moretto
- Agenzia Regionale per la Protezione dell'Ambiente Ligure (ARPAL), Genova, Italy
| | - Alessandro Dagnino
- Agenzia Regionale per la Protezione dell'Ambiente Ligure (ARPAL), Genova, Italy
| | - Rosella Bertolotto
- Agenzia Regionale per la Protezione dell'Ambiente Ligure (ARPAL), Genova, Italy
| | - Enrico Barbone
- Agenzia Regionale per la Protezione dell'Ambiente Puglia (ARPA Puglia), Bari, Italy
| | - Nicola Ungaro
- Agenzia Regionale per la Protezione dell'Ambiente Puglia (ARPA Puglia), Bari, Italy
| | - Antonella Penna
- Department of Biomolecular Sciences, University of Urbino, 61121, Pesaro, Italy; CONISMA, Consorzio Interuniversitario Scienze del Mare, 00184, Roma, Italy; IRBIM CNR, Istituto per le Risorse Biologiche e le Biotecnologie Marine, Consiglio Nazionale delle Ricerche, Ancona, Italy.
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Zhou C, Carotenuto Y, Vitiello V, Wu C, Zhang J, Buttino I. De novo transcriptome assembly and differential gene expression analysis of the calanoid copepod Acartia tonsa exposed to nickel nanoparticles. CHEMOSPHERE 2018; 209:163-172. [PMID: 29929122 DOI: 10.1016/j.chemosphere.2018.06.096] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2018] [Revised: 06/04/2018] [Accepted: 06/12/2018] [Indexed: 06/08/2023]
Abstract
The calanoid copepod Acartia tonsa is a reference species in standardized ecotoxicology bioassay. Despite this interest, there is a lack of knowledge on molecular responses of A. tonsa to contaminants. We generated a de novo assembled transcriptome of A. tonsa exposed 4 days to 8.5 and 17 mg/L nickel nanoparticles (NiNPs), which have been shown to reduce egg hatching success and larval survival but had no effects on the adults. Aims of our study were to 1) improve the knowledge on the molecular responses of A. tonsa copepod and 2) increase the genomic resources of this copepod for further identification of potential biomarkers of NP exposure. The de novo assembled transcriptome of A. tonsa consisted of 53,619 unigenes, which were further annotated to nr, GO, KOG and KEGG databases. In particular, most unigenes were assigned to Metabolic and Cellular processes (34-45%) GO terms, and to Human disease (28%) and Organismal systems (23%) KEGG categories. Comparison among treatments showed that 373 unigenes were differentially expressed in A. tonsa exposed to NiNPs at 8.5 and 17 mg/L, with respect to control. Most of these genes were downregulated and took part in ribosome biogenesis, translation and protein turnover, thus suggesting that NiNPs could affect the copepod ribosome synthesis machinery and functioning. Overall, our study highlights the potential of toxicogenomic approach in gaining more mechanistic and functional information about the mode of action of emerging compounds on marine organisms, for biomarker discovering in crustaceans.
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Affiliation(s)
- Chao Zhou
- National Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, No.1 Haida South Road, Lincheng Changzhi Island, Zhoushan, Zhejiang 316022, PR China
| | - Ylenia Carotenuto
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, Napoli, Italy
| | - Valentina Vitiello
- Istituto Superiore per La Protezione e Ricerca Ambientale ISPRA, Via del cedro 38, 57122, Livorno, Italy
| | - Changwen Wu
- National Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, No.1 Haida South Road, Lincheng Changzhi Island, Zhoushan, Zhejiang 316022, PR China
| | - Jianshe Zhang
- National Engineering Research Center of Marine Facilities Aquaculture, College of Marine Science and Technology, Zhejiang Ocean University, No.1 Haida South Road, Lincheng Changzhi Island, Zhoushan, Zhejiang 316022, PR China
| | - Isabella Buttino
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, Napoli, Italy; Istituto Superiore per La Protezione e Ricerca Ambientale ISPRA, Via del cedro 38, 57122, Livorno, Italy.
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Xie Y, Chen H, Zheng S, Zhang X, Mu S. Molecular characterization of cu/Zn SOD gene in Asian clam Corbicula fluminea and mRNA expression and enzymatic activity modulation induced by metals. Gene 2018; 663:189-195. [DOI: 10.1016/j.gene.2018.04.044] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2017] [Revised: 04/12/2018] [Accepted: 04/16/2018] [Indexed: 10/17/2022]
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Toxigenic effects of two benthic diatoms upon grazing activity of the sea urchin: morphological, metabolomic and de novo transcriptomic analysis. Sci Rep 2018; 8:5622. [PMID: 29618786 PMCID: PMC5884808 DOI: 10.1038/s41598-018-24023-9] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Accepted: 03/26/2018] [Indexed: 01/15/2023] Open
Abstract
Diatoms are unicellular algae playing a key role as photosynthetic organisms in the world's ocean food webs. The chemical ecology of planktonic diatoms is well documented, but few studies have reported on the effects of benthic diatoms on their consumers, also due to difficulties in the collection, quantification and massive culturing of benthic species. Here for the first time we investigate the effects of feeding on two abundantly occurring benthic diatoms, Nanofrustulum shiloi and Cylindrotheca closterium, isolated from the leaves of the seagrass Posidonia oceanica, on the sea urchin Paracentrotus lividus. Adult P. lividus were fed for one month on diets of either one of the two diatoms and on the green alga Ulva rigida, used as a feeding control. By combining morphological, metabolomic and de novo transcriptomic approaches, we demonstrate toxigenic effect on embryos generated by females fed with these benthic diatoms. Furthermore, chemical analysis reveal the presence of polyunsaturated aldehydes only for N. shiloi, and a high production of other oxylipins (cytotoxic compounds on their grazers and on cancer cell lines) for both diatoms, including some additional peaks not correlated to the canonic oxylipins commonly observed in planktonic diatoms. These findings open new perspectives in the study of diatom secondary metabolites influencing their grazers.
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Lauritano C, Martín J, de la Cruz M, Reyes F, Romano G, Ianora A. First identification of marine diatoms with anti-tuberculosis activity. Sci Rep 2018; 8:2284. [PMID: 29396507 PMCID: PMC5797112 DOI: 10.1038/s41598-018-20611-x] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2017] [Accepted: 01/21/2018] [Indexed: 01/06/2023] Open
Abstract
Marine microalgae are considered a potentially new and valuable source of biologically active compounds for applications in several biotechnology sectors. They can be easily cultured, have short generation times and enable an environmentally-friendly approach to drug discovery by overcoming problems associated with the over-utilization of marine resources and the use of destructive collection practices. Considering the increasing rate of antibiotic-resistance bacteria and infections by fungi, 46 microalgae have been screened in this study for possible antibacterial and antifungal activities. Two different extraction methods have been used in order to increase the probability of finding positive hits. In particular, we screened microalgae in both control and nutrient stress conditions. We also tested different strains for 7 species in order to study potentially different bioactivities due to strain diversity. Results showed that extracts of two diatoms, Skeletonema costatum and Chaetoceros pseudocurvisetus, had anti-tuberculosis activity and were active only when cultured in the control and phosphate-starvation conditions, while the nitrogen starvation condition showed no activity. In addition, we tested both the organic and water extracts and found that only the organic extracts for both diatoms were active. The organic extracts of these two diatom species were not toxic on normal human cell lines.
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Affiliation(s)
- Chiara Lauritano
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Naples, Italy.
| | - Jesús Martín
- Fundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en, Andalucía, Avda. del Conocimiento 34, Granada, 18016, Spain
| | - Mercedes de la Cruz
- Fundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en, Andalucía, Avda. del Conocimiento 34, Granada, 18016, Spain
| | - Fernando Reyes
- Fundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en, Andalucía, Avda. del Conocimiento 34, Granada, 18016, Spain
| | - Giovanna Romano
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Naples, Italy
| | - Adrianna Ianora
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Naples, Italy
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Ingebrigtsen RA, Hansen E, Andersen JH, Eilertsen HC. Field sampling marine plankton for biodiscovery. Sci Rep 2017; 7:15863. [PMID: 29158560 PMCID: PMC5696511 DOI: 10.1038/s41598-017-15980-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2017] [Accepted: 11/06/2017] [Indexed: 11/14/2022] Open
Abstract
Microalgae and plankton can be a rich source of bioactivity. However, induction of secondary metabolite production in lab conditions can be difficult. One simple way of bypassing this issue is to collect biomass in the field and screen for bioactivity. Therefore, bulk net samples from three areas along the coast of northern Norway and Spitsbergen were collected, extracted and fractionated. Biomass samples from a strain of a mass-cultivated diatom Porosira glacialis were used as a reference for comparison to field samples. Screening for bioactivity was performed with 13 assays within four therapeutic areas: antibacterial, anticancer, antidiabetes and antioxidation. We analysed the metabolic profiles of the samples using high resolution - mass spectroscopy (HR-MS). Principal component analysis showed a marked difference in metabolite profiles between the field samples and the photobioreactor culture; furthermore, the number of active fractions and extent of bioactivity was different in the field compared to the photobioreactor samples. We found varying levels of bioactivity in all samples, indicating that complex marine field samples could be used to investigate bioactivities from otherwise inaccessible sources. Furthermore, we hypothesize that metabolic pathways that would otherwise been silent under controlled growth in monocultures, might have been activated in the field samples.
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Affiliation(s)
| | - Espen Hansen
- Marbio, UiT - The Arctic University of Norway, 9019, Tromsø, Norway
| | | | - Hans Christian Eilertsen
- Norwegian College of Fishery Science, UiT - The Arctic University of Norway, 9019, Tromsø, Norway
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Xie Y. Molecular characterization of the HSP70 and HSP90 genes in Asian clam ( Corbicula fluminea ) and their expression analysis during heavy metal exposure. GENE REPORTS 2017. [DOI: 10.1016/j.genrep.2017.01.002] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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Di Lorenzo T, Melita M, Cifoni M, Galassi DMP, Iannucci A, Biricolti S, Gori M, Baratti M. Effect of ammonia on the gene expression levels of the freshwater cyclopoid Eucyclops serrulatus. ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY 2017; 51:138-141. [PMID: 28238699 DOI: 10.1016/j.etap.2017.02.017] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2016] [Revised: 02/16/2017] [Accepted: 02/18/2017] [Indexed: 06/06/2023]
Abstract
Ammonia pollution is a critical issue in Europe, since more than half of the European freshwater bodies actually fail to meet EU quality standards for this chemical. In this study, the response of stress-related genes to a sublethal ammonia concentration has been investigated in the adults of the freshwater cyclopoid Eucyclops serrulatus. Two short-term exposures (12h and 24h) at 12mg/L NH4+ have been tested. Results indicate that 12mg/L NH4+ causes a significant increase in the expression of some proteins, namely CAT, HSP90 and HSP40, suggesting an activation of the protecting antioxidant system after both 12h and 24h.
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Affiliation(s)
- Tiziana Di Lorenzo
- Institute of Ecosystem Study (ISE), CNR, Sesto Fiorentino, Firenze, Italy
| | - Marco Melita
- Institute of Ecosystem Study (ISE), CNR, Sesto Fiorentino, Firenze, Italy
| | - Marco Cifoni
- Institute of Ecosystem Study (ISE), CNR, Sesto Fiorentino, Firenze, Italy; Department of Life, Health and Environmental Sciences, University of L'Aquila, L'Aquila, Italy
| | - Diana M P Galassi
- Department of Life, Health and Environmental Sciences, University of L'Aquila, L'Aquila, Italy
| | - Alessio Iannucci
- Institute of Ecosystem Study (ISE), CNR, Sesto Fiorentino, Firenze, Italy
| | - Stefano Biricolti
- Department Agrifood Production and Environmental Sciences (DISPAA), Sesto Fiorentino, Firenze, Italy
| | - Massimo Gori
- Department Agrifood Production and Environmental Sciences (DISPAA), Sesto Fiorentino, Firenze, Italy
| | - Mariella Baratti
- Institute of Ecosystem Study (ISE), CNR, Sesto Fiorentino, Firenze, Italy.
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Roncalli V, Jungbluth MJ, Lenz PH. Glutathione S-Transferase Regulation in Calanus finmarchicus Feeding on the Toxic Dinoflagellate Alexandrium fundyense. PLoS One 2016; 11:e0159563. [PMID: 27427938 PMCID: PMC4948837 DOI: 10.1371/journal.pone.0159563] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Accepted: 07/05/2016] [Indexed: 01/06/2023] Open
Abstract
The effect of the dinoflagellate, Alexandrium fundyense, on relative expression of glutathione S-transferase (GST) transcripts was examined in the copepod Calanus finmarchicus. Adult females were fed for 5-days on one of three experimental diets: control (100% Rhodomonas spp.), low dose of A. fundyense (25% by volume, 75% Rhodomonas spp.), and high dose (100% A. fundyense). Relative expression of three GST genes was measured using RT-qPCR on days 0.5, 1, 2 and 5 in two independent experiments. Differential regulation was found for the Delta and the Sigma GSTs between 0.5 to 2 days, but not on day 5 in both experiments. The third GST, a microsomal, was not differentially expressed in either treatment or day. RT-qPCR results from the two experiments were similar, even though experimental females were collected from the Gulf of Maine on different dates and their reproductive output differed. In the second experiment, expression of 39 GSTs was determined on days 2 and 5 using RNA-Seq. Global gene expression analyses agreed with the RT-qPCR results. Furthermore, the RNA-Seq measurements indicated that only four GSTs were differentially expressed under the experimental conditions, and the response was small in amplitude. In summary, the A. fundyense diet led to a rapid and transient response in C. finmarchicus in three cytosolic GSTs, while a fourth GST (Omega I) was significantly up-regulated on day 5. Although there was some regulation of GSTs in response the toxic dinoflagellate, the tolerance to A. fundyense by C. finmarchicus is not dependent on the long-term up-regulation of specific GSTs.
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Affiliation(s)
- Vittoria Roncalli
- Békésy Laboratory of Neurobiology, Pacific Biosciences Research Center, University of Hawai‘i at Mānoa, 1993 East-West Road, Honolulu, HI 96822, United States of America
- * E-mail:
| | - Michelle J. Jungbluth
- Department of Oceanography, 1000 Pope Rd., University of Hawai‘i at Mānoa, Honolulu, HI 96822, United States of America
| | - Petra H. Lenz
- Békésy Laboratory of Neurobiology, Pacific Biosciences Research Center, University of Hawai‘i at Mānoa, 1993 East-West Road, Honolulu, HI 96822, United States of America
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