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Ibghi M, Rijal Leblad B, L’Bachir El Kbiach M, Aboualaalaa H, Daoudi M, Masseret E, Le Floc’h E, Hervé F, Bilien G, Chomerat N, Amzil Z, Laabir M. Molecular Phylogeny, Morphology, Growth and Toxicity of Three Benthic Dinoflagellates Ostreopsis sp. 9, Prorocentrum lima and Coolia monotis Developing in Strait of Gibraltar, Southwestern Mediterranean. Toxins (Basel) 2024; 16:49. [PMID: 38251265 PMCID: PMC10819257 DOI: 10.3390/toxins16010049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Revised: 01/11/2024] [Accepted: 01/12/2024] [Indexed: 01/23/2024] Open
Abstract
Few works have been carried out on benthic harmful algal blooms (BHAB) species in the southern Mediterranean and no data are available for the highly dynamic Strait of Gibraltar (western Mediterranean waters). For the first time, Ostreopsis sp. 9, Prorocentrum lima and Coolia monotis were isolated in this key region in terms of exchanges between the Atlantic Ocean and the Mediterranean and subject to intense maritime traffic. Ribotyping confirmed the morphological identification of these three dinoflagellates species. Monoclonal cultures were established and the maximum growth rate and cell yield were measured at a temperature of 24 °C and an irradiance of 90 µmol photons m-2 s-1, for each species: 0.26 ± 0.02 d-1 (8.75 × 103 cell mL-1 after 28 days) for Ostreopsis sp. 9, 0.21 ± 0.01 d-1 (49 × 103 cell mL-1 after 145 days) for P. lima and 0.21 ± 0.01 d-1 (10.02 × 103 cell mL-1 after 28 days) for C. monotis. Only P. lima was toxic with concentrations of okadaic acid and dinophysistoxin-1 measured in optimal growth conditions ranging from 6.4 pg cell-1 to 26.97 pg cell-1 and from 5.19 to 25.27 pg cell-1, respectively. The toxin content of this species varied in function of the growth phase. Temperature influenced the growth and toxin content of P. lima. Results suggest that future warming of Mediterranean coastal waters may lead to higher growth rates and to increases in cellular toxin levels in P. lima. Nitrate and ammonia affected the toxin content of P. lima but no clear trend was noted. In further studies, we have to isolate other BHAB species and strains from Strait of Gibraltar waters to obtain more insight into their diversity and toxicity.
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Affiliation(s)
- Mustapha Ibghi
- Marine Environment Monitoring Laboratory, INRH (Moroccan Institute of Fisheries Research), Tangier 90000, Morocco; (M.I.); (H.A.); (M.D.)
- Equipe de Biotechnologie Végétale, Faculty of Sciences, Abdelmalek Essaadi University Tetouan, Tetouan 93000, Morocco;
- MARBEC, University of Montpellier, CNRS, IRD, Ifremer, 34095 Montpellier, France; (E.M.); (E.L.F.)
| | - Benlahcen Rijal Leblad
- Marine Environment Monitoring Laboratory, INRH (Moroccan Institute of Fisheries Research), Tangier 90000, Morocco; (M.I.); (H.A.); (M.D.)
| | - Mohammed L’Bachir El Kbiach
- Equipe de Biotechnologie Végétale, Faculty of Sciences, Abdelmalek Essaadi University Tetouan, Tetouan 93000, Morocco;
| | - Hicham Aboualaalaa
- Marine Environment Monitoring Laboratory, INRH (Moroccan Institute of Fisheries Research), Tangier 90000, Morocco; (M.I.); (H.A.); (M.D.)
- Equipe de Biotechnologie Végétale, Faculty of Sciences, Abdelmalek Essaadi University Tetouan, Tetouan 93000, Morocco;
- MARBEC, University of Montpellier, CNRS, IRD, Ifremer, 34095 Montpellier, France; (E.M.); (E.L.F.)
| | - Mouna Daoudi
- Marine Environment Monitoring Laboratory, INRH (Moroccan Institute of Fisheries Research), Tangier 90000, Morocco; (M.I.); (H.A.); (M.D.)
| | - Estelle Masseret
- MARBEC, University of Montpellier, CNRS, IRD, Ifremer, 34095 Montpellier, France; (E.M.); (E.L.F.)
| | - Emilie Le Floc’h
- MARBEC, University of Montpellier, CNRS, IRD, Ifremer, 34095 Montpellier, France; (E.M.); (E.L.F.)
| | - Fabienne Hervé
- Laboratoire Phycotoxines, IFREMER (French Research Institute for Exploitation of the Sea)/PHYTOX/METALG, 44311 Nantes, France; (F.H.); (Z.A.)
| | - Gwenael Bilien
- IFREMER, Unité Littoral, Station de Biologie Marine, Place de la Croix, 29185 Concarneau, France; (G.B.); (N.C.)
| | - Nicolas Chomerat
- IFREMER, Unité Littoral, Station de Biologie Marine, Place de la Croix, 29185 Concarneau, France; (G.B.); (N.C.)
| | - Zouher Amzil
- Laboratoire Phycotoxines, IFREMER (French Research Institute for Exploitation of the Sea)/PHYTOX/METALG, 44311 Nantes, France; (F.H.); (Z.A.)
| | - Mohamed Laabir
- MARBEC, University of Montpellier, CNRS, IRD, Ifremer, 34095 Montpellier, France; (E.M.); (E.L.F.)
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Toldrà A, Chondrogiannis G, Hamedi MM. A 3D paper microfluidic device for enzyme-linked assays: Application to DNA analysis. Biotechnol J 2023; 18:e2300143. [PMID: 37222181 DOI: 10.1002/biot.202300143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Revised: 03/31/2023] [Accepted: 05/17/2023] [Indexed: 05/25/2023]
Abstract
A paper microfluidic device capable of conducting enzyme-linked assays is presented: a microfluidic enzyme-linked paper analytical device (μEL-PAD). The system exploits a wash-free sandwich coupling to form beads/analyte/enzyme complexes, which are subsequently added to the vertical flow device composed of wax-printed paper, waxed nitrocellulose membrane and absorbent/barrier layers. The nitrocellulose retains the bead complexes without disrupting the flow, enabling for an efficient washing step. The entrapped complexes then interact with the chromogenic substrate stored on the detection paper, generating a color change on it, quantified with an open-source smartphone software. This is a universal paper-based technology suitable for high-sensitivity quantification of many analytes, such as proteins or nucleic acids, with different enzyme-linked formats. Here, the potential of the μEL-PAD is demonstrated to detect DNA from Staphylococcus epidermidis. After generation of isothermally amplified genomic DNA from bacteria, Biotin/FITC-labeled products were analyzed with the μEL-PAD, exploiting streptavidin-coated beads and antiFITC-horseradish peroxidase. The μEL-PAD achieved a limit of detection (LOD) and quantification <10 genome copies/μL, these being at least 70- and 1000-fold lower, respectively, than a traditional lateral flow assay (LFA) exploiting immobilized streptavidin and antiFITC-gold nanoparticles. It is envisaged that the device will be a good option for low-cost, simple, quantitative, and sensitive paper-based point-of-care testing.
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Affiliation(s)
- Anna Toldrà
- School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, Sweden
| | - Georgios Chondrogiannis
- School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, Sweden
| | - Mahiar M Hamedi
- School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, Sweden
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3
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Hanze M, Khaliliazar S, Réu P, Toldrà A, Hamedi MM. Toward Continuous Molecular Testing Using Gold-Coated Threads as Multi-Target Electrochemical Biosensors. BIOSENSORS 2023; 13:844. [PMID: 37754078 PMCID: PMC10526339 DOI: 10.3390/bios13090844] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 08/14/2023] [Accepted: 08/23/2023] [Indexed: 09/28/2023]
Abstract
Analytical systems based on isothermal nucleic acid amplification tests (NAATs) paired with electroanalytical detection enable cost-effective, sensitive, and specific digital pathogen detection for various in situ applications such as point-of-care medical diagnostics, food safety monitoring, and environmental surveillance. Self-assembled monolayers (SAMs) on gold surfaces are reliable platforms for electroanalytical DNA biosensors. However, the lack of automation and scalability often limits traditional chip-based systems. To address these challenges, we propose a continuous thread-based device that enables multiple electrochemical readings on a functionalized working electrode Au thread with a single connection point. We demonstrate the possibility of rolling the thread on a spool, which enables easy manipulation in a roll-to-roll architecture for high-throughput applications. As a proof of concept, we have demonstrated the detection of recombinase polymerase amplification (RPA) isothermally amplified DNA from the two toxic microalgae species Ostreopsis cf. ovata and Ostreopsis cf. siamensis by performing a sandwich hybridization assay (SHA) with electrochemical readout.
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Affiliation(s)
| | | | | | - Anna Toldrà
- Department of Fibre and Polymer Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Teknikringen 56, 10044 Stockholm, Sweden
| | - Mahiar M. Hamedi
- Department of Fibre and Polymer Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Teknikringen 56, 10044 Stockholm, Sweden
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Liu F, Zhang C, Duan Y, Ma J, Wang Y, Chen G. A detection method for Prorocentrum minimum by an aptamer-gold nanoparticles based colorimetric assay. JOURNAL OF HAZARDOUS MATERIALS 2023; 449:131043. [PMID: 36827721 DOI: 10.1016/j.jhazmat.2023.131043] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Revised: 02/16/2023] [Accepted: 02/17/2023] [Indexed: 06/18/2023]
Abstract
Here, to give early waring for harmful algal blooms caused by Prorocentrum minimum, we reported a simple and rapid colorimetric assay that is named aptamer-gold nanoparticles (GNPs) based colorimetric assay (AGBCA). The GNPs maintain a dispersed state and have a strong characteristic absorption peak at 520 nm. With the addition of NaCl, the stability of the solution will be destroyed and the dispersed GNPs will aggregate. Therefore, the characteristic absorption peak of the GNPs solution will change from 520 nm to 670 nm. Aptamers can be adsorbed on the surface of GNPs, effectively preventing the aggregation of GNPs. In the presence of P. minimum, aptamers will specifically bind to P. minimum, causing the dissociation of the aptamers from GNPs. Consequently, the GNPs will aggregate in the NaCl solution, corresponding to a new absorption peak at 670 nm. A linear relationship between the absorbance ratio variation (ΔA670/A520) and the P. minimum concentration was observed in the concentration range of 1 × 102 - 1 × 107 cells mL-1, with a low detection limit of 8 cells mL-1. The developed AGBCA is characterized by simplicity, strong specificity, and high sensitivity and is thus promising for the quantitative detection of P. minimum in natural samples.
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Affiliation(s)
- Fuguo Liu
- School of Marine Science and Technology, Harbin Institute of Technology (Weihai), Weihai 264209, PR China; School of Environment, Harbin Institute of Technology, Harbin 150090, PR China
| | - Chunyun Zhang
- School of Marine Science and Technology, Harbin Institute of Technology (Weihai), Weihai 264209, PR China.
| | - Yu Duan
- School of Environment, Harbin Institute of Technology, Harbin 150090, PR China
| | - Jinju Ma
- School of Environment, Harbin Institute of Technology, Harbin 150090, PR China
| | - Yuanyuan Wang
- School of Marine Science and Technology, Harbin Institute of Technology (Weihai), Weihai 264209, PR China
| | - Guofu Chen
- School of Marine Science and Technology, Harbin Institute of Technology (Weihai), Weihai 264209, PR China
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Xu S, Lyu P, Zheng X, Yang H, Xia B, Li H, Zhang H, Ma S. Monitoring and control methods of harmful algal blooms in Chinese freshwater system: a review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:56908-56927. [PMID: 35708805 DOI: 10.1007/s11356-022-21382-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Accepted: 06/06/2022] [Indexed: 06/15/2023]
Abstract
Harmful algal blooms (HABs) are a worldwide problem with substantial adverse effects on the aquatic environment as well as human health, which have prompted researchers to study measures to stem and control them. Meanwhile, it is key to research and develop monitoring methods to establish early warning HABs. However, both the current monitoring methods and control methods have some shortcomings, making the field application limited. Thus, we need to improve current approaches for monitoring and controlling HABs efficiently. Based on the freshwater system features in China, we review various monitoring and control methods of HABs, summarize and discuss the problems with these methods, and propose the future development direction of monitoring and control HABs. Finally, we envision that it can combine physical, chemical, and biological methods to inhibit HAB expansion in the future, complementing each other with advantages. Further, we promise to establish a long-term strategy of controlling HABs with various algicidal bacteria co-cultivate for field applications in China. Efforts in studying algicidal bacteria must be increased to better control HABs and mitigate the risks of aquatic ecosystems and human health in China.
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Affiliation(s)
- Shengjun Xu
- Shenzhen BLY Landscape & Architecture Planning & Design Institute, Shenzhen, 518055, China
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Ping Lyu
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Xiaoxu Zheng
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Haijun Yang
- Shenzhen BLY Landscape & Architecture Planning & Design Institute, Shenzhen, 518055, China
| | - Bing Xia
- Shenzhen BLY Landscape & Architecture Planning & Design Institute, Shenzhen, 518055, China
| | - Hui Li
- Shenzhen BLY Landscape & Architecture Planning & Design Institute, Shenzhen, 518055, China
| | - Hao Zhang
- South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, China
| | - Shuanglong Ma
- College of Resources and Environmental Sciences, Henan Agricultural University, Zhengzhou, 450002, China.
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Liu F, Zhang C, Wang Y, Chen G. A review of the current and emerging detection methods of marine harmful microalgae. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 815:152913. [PMID: 34999066 DOI: 10.1016/j.scitotenv.2022.152913] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Revised: 12/13/2021] [Accepted: 12/31/2021] [Indexed: 06/14/2023]
Abstract
In recent years, the scale and frequency of outbreaks of harmful algal blooms (HABs) have increased year by year due to the intensification of seawater eutrophication and global climate change. HABs have become a global marine ecological and environmental problem, which poses a serious threat to human health, marine ecological security, and economic development. The establishment of detection technology for harmful microalgae is fundamental to the early warning and prevention of HABs. To date, several detection methods have been developed for harmful microalgae, they however lack a unified classification standard. It is difficult to use a reasonable mix of all the developed methods to improve the accuracy of detection results. Here, all of the established detection methods for harmful microalgae were reviewed, including morphological structure-based detection methods, cytochrome-based detection techniques, immunoassays, and nucleic acid-based detection methods. The principles, advantages, and weaknesses of these methods were highlighted. Their application in the detection of harmful microalgae was summarized. Overall, different detection methods are suitable for different purposes. Further development of more accurate, cost-effective, efficient, and rapid detection technology is required in the future. This review is expected to provide a reference for research related to the monitoring of marine environment, early warning of HABs, and the molecular identification of harmful microalgae.
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Affiliation(s)
- Fuguo Liu
- School of Marine Science and Technology, Harbin Institute of Technology (Weihai), Weihai 264209, PR China; School of Environment, Harbin Institute of Technology, Harbin 150090, PR China
| | - Chunyun Zhang
- School of Marine Science and Technology, Harbin Institute of Technology (Weihai), Weihai 264209, PR China; School of Marine Sciences, Ningbo University, Ningbo 315211, PR China.
| | - Yuanyuan Wang
- School of Marine Science and Technology, Harbin Institute of Technology (Weihai), Weihai 264209, PR China
| | - Guofu Chen
- School of Marine Science and Technology, Harbin Institute of Technology (Weihai), Weihai 264209, PR China.
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Gaiani G, Cucchi F, Toldrà A, Andree KB, Rey M, Tsumuraya T, O'Sullivan CK, Diogène J, Campàs M. Electrochemical biosensor for the dual detection of Gambierdiscus australes and Gambierdiscus excentricus in field samples. First report of G. excentricus in the Balearic Islands. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 806:150915. [PMID: 34653452 DOI: 10.1016/j.scitotenv.2021.150915] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 10/06/2021] [Accepted: 10/07/2021] [Indexed: 06/13/2023]
Abstract
Several genera of marine dinoflagellates are known to produce bioactive compounds that affect human health. Among them, Gambierdiscus and Fukuyoa stand out for their ability to produce several toxins, including the potent neurotoxic ciguatoxins (CTXs), which accumulate through the food web. Once fishes contaminated with CTXs are ingested by humans, it can result in an intoxication named ciguatera. Within the two genera, only some species are able to produce toxins, and G. australes and G. excentricus have been highlighted to be the most abundant and toxic. Although the genera Gambierdiscus and Fukuyoa are endemic to tropical areas, their presence in subtropical and temperate regions has been recently recorded. In this work, the combined use of species-specific PCR primers for G. australes and G. excentricus modified with short oligonucleotide tails allowed the development of a multiplex detection system for these two toxin-producing species. Simultaneous detection was achieved using capture probes specific for G. australes and G. excentricus immobilized on maleimide-coated magnetic beads (MBs), separately placed on the working electrodes of a dual electrode array. Additionally, a rapid DNA extraction technique based on a portable bead beater system and MBs was developed, significantly reducing the extraction time (from several hours to 30 min). The developed technique was able to detect as low as 10 cells of both Gambierdiscus species and allowed the first detection of G. excentricus in the Balearic Islands in 8 out of the 12 samples analyzed. Finally, field samples were screened for CTXs with an immunosensor, successfully reporting 13.35 ± 0.5 pg CTX1B equiv. cell-1 in one sample and traces of toxins in 3 out of the 9 samples analyzed. These developments provide rapid and cost-effective strategies for ciguatera risk assessment, with the aim of guaranteeing seafood safety.
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Affiliation(s)
- Greta Gaiani
- IRTA, Ctra Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Spain
| | - Francesca Cucchi
- IRTA, Ctra Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Spain; Dipartimento di Scienze della Vita,UNITS, Via Giorgieri, 5, 34127 Trieste, Italy
| | - Anna Toldrà
- IRTA, Ctra Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Spain
| | - Karl B Andree
- IRTA, Ctra Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Spain
| | - María Rey
- IRTA, Ctra Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Spain
| | - Takeshi Tsumuraya
- Department of Biological Sciences, Graduate School of Science, Osaka Prefecture University, Osaka 599-8570, Japan
| | - Ciara K O'Sullivan
- Departament d'Enginyeria Química, URV, Països Catalans 26, 43007 Tarragona, Spain; ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain
| | - Jorge Diogène
- IRTA, Ctra Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Spain
| | - Mònica Campàs
- IRTA, Ctra Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Spain.
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Ginés I, Gaiani G, Ruhela A, Skouridou V, Campàs M, Masip L. Nucleic acid lateral flow dipstick assay for the duplex detection of Gambierdiscus australes and Gambierdiscus excentricus. HARMFUL ALGAE 2021; 110:102135. [PMID: 34887012 DOI: 10.1016/j.hal.2021.102135] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2021] [Revised: 11/02/2021] [Accepted: 11/08/2021] [Indexed: 06/13/2023]
Abstract
The proliferation of harmful microalgae endangers aquatic ecosystems and can have serious economic implications on a global level. Harmful microalgae and their associated toxins also pose a threat to human health since they can cause seafood-borne diseases such as ciguatera. Implementation of DNA-based molecular methods together with appropriate detection strategies in monitoring programs can support the efforts for effective prevention of potential outbreaks. A PCR-lateral flow assay (PCR-LFA) in dipstick format was developed in this work for the detection of two Gambierdiscus species, G. australes and G. excentricus, which are known to produce highly potent neurotoxins known as ciguatoxins and have been associated with ciguatera outbreaks. Duplex PCR amplification of genomic DNA from strains of these species utilizing species-specific ssDNA tailed primers and a common primer containing the binding sequence of scCro DNA binding protein resulted in the generation of hybrid ssDNA-dsDNA amplicons. These were captured on the dipsticks via hybridization with complementary probes and detected with a scCro/carbon nanoparticle (scCro/CNPs) conjugate. The two different test zones on the dipsticks allowed the discrimination of the two species and the assay exhibited high sensitivity, 6.3 pg/μL of genomic DNA from both G. australes and G. excentricus. The specificity of the approach was also demonstrated using genomic DNA from non-target Gambierdiscus species and other microalgae genera which did not produce any signals. The possibility to use cells directly for amplification instead of purified genomic DNA suggested the compatibility of the approach with field sample testing. Future work is required to further explore the potential use of the strategy for on-site analysis and its applicability to other toxic species.
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Affiliation(s)
- Iris Ginés
- Departament d'Enginyeria Química, Universitat Rovira i Virgili, 26 Països Catalans, 43007 Tarragona, Spain
| | - Greta Gaiani
- IRTA, Ctra Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Spain
| | - Ankur Ruhela
- Departament d'Enginyeria Química, Universitat Rovira i Virgili, 26 Països Catalans, 43007 Tarragona, Spain
| | - Vasso Skouridou
- Departament d'Enginyeria Química, Universitat Rovira i Virgili, 26 Països Catalans, 43007 Tarragona, Spain
| | - Mònica Campàs
- IRTA, Ctra Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Spain
| | - Lluis Masip
- Departament d'Enginyeria Química, Universitat Rovira i Virgili, 26 Països Catalans, 43007 Tarragona, Spain.
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Toldrà A, O'Sullivan CK, Diogène J, Campàs M. Detecting harmful algal blooms with nucleic acid amplification-based biotechnological tools. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 749:141605. [PMID: 32827817 DOI: 10.1016/j.scitotenv.2020.141605] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 08/07/2020] [Accepted: 08/08/2020] [Indexed: 06/11/2023]
Abstract
Harmful algal blooms (HABs) represent a growing threat to aquatic ecosystems and humans. Effective HAB management and mitigation efforts strongly rely on the availability of timely and in-situ tools for the detection of microalgae. In this sense, nucleic acid-based (molecular) methods are being considered for the unequivocal identification of microalgae as an attractive alternative to the currently used time-consuming and laboratory-based light microscopy techniques. This review provides an overview of the progress made on new molecular biotechnological tools for microalgal detection, particularly focusing on those that combine a nucleic acid (DNA or RNA) amplification step with detection. Different types of amplification processes (thermal and isothermal) and detection formats (e.g. microarrays, biosensors, lateral flows) are presented, and a comprehensive overview of their advantages and limitations is provided Although isothermal techniques are an attractive alternative to thermal amplification to reach in-situ analysis, further development is still required. Finally, current challenges, critical steps and future directions of the whole analysis process (from sample procurement to in-situ implementation) are described.
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Affiliation(s)
- Anna Toldrà
- IRTA, Ctra. Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Tarragona, Spain; Department of Fibre and Polymer Technology, KTH Royal Institute of Technology, Teknikringen 56, 10044 Stockholm, Sweden.
| | - Ciara K O'Sullivan
- Departament d'Enginyeria Química, Universitat Rovira i Virgili, Av. Països Catalans 26, 43007 Tarragona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Pg. Lluís Companys 23, 08010 Barcelona, Spain
| | - Jorge Diogène
- IRTA, Ctra. Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Tarragona, Spain
| | - Mònica Campàs
- IRTA, Ctra. Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Tarragona, Spain
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Motalebizadeh A, Asiaei S. Micro-fabrication by wax spraying for rapid smartphone-based quantification of bio-markers. Anal Biochem 2020; 603:113777. [PMID: 32445635 DOI: 10.1016/j.ab.2020.113777] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2020] [Revised: 05/09/2020] [Accepted: 05/13/2020] [Indexed: 11/29/2022]
Abstract
A cheap/rapid technique for the fabrication of μPADs is presented for point of care analysis. Hydrophobic channels were formed across the width of the paper by spraying hot pure wax. This biocompatible novel process yielded uniform 300 ± 5 μm hydrophilic microchannels on paper, without the use of the cleanroom, UV lamp, or organic solvents and was completed in a single step without the need for a hotplate. Hot wax is properly impregnated across paper thickness by spraying under optimized temperature and pressure. Our method is advantageous in the cost and ease of fabrication, process time (<1 min), the feasibility of mass-fabrication, readout, environmental considerations and multiplexing due to the embossed structure of remnant wax. The performance of the resulting μPAD was assessed on a multiplexed Uric acid and Nitride assay, bearing 95% of confidence level in the readout against standardized tests. A novel RGB processing app was developed for smart-phones to quantify colorimetric read-outs through a heuristic normalization equation that converts RGB to integer systems. This combinatorial sensor demonstrates a good linear range (up to 800 μM for Uric acid and 1250 μM for Nitride), low detection limit (100 μM for uric acid and 156 μM for nitride).
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Affiliation(s)
- Abbas Motalebizadeh
- Sensors and Integrated Biomicrofluidics/MEMS Laboratory, School of Mechanical Engineering, Iran University of Science and Technology, 1684613114, Tehran, Iran
| | - Sasan Asiaei
- Sensors and Integrated Biomicrofluidics/MEMS Laboratory, School of Mechanical Engineering, Iran University of Science and Technology, 1684613114, Tehran, Iran; Sensors and Integrated Microsystems Laboratory, Mechanical and Mechatronics Engineering Department, University of Waterloo, ON, N2L 3G1, Waterloo, Canada.
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Detection of isothermally amplified ostreid herpesvirus 1 DNA in Pacific oyster (Crassostrea gigas) using a miniaturised electrochemical biosensor. Talanta 2020; 207:120308. [DOI: 10.1016/j.talanta.2019.120308] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Revised: 08/30/2019] [Accepted: 08/31/2019] [Indexed: 01/10/2023]
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Toldrà A, Alcaraz C, Diogène J, O'Sullivan CK, Campàs M. Detection of Ostreopsis cf. ovata in environmental samples using an electrochemical DNA-based biosensor. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 689:655-661. [PMID: 31279212 DOI: 10.1016/j.scitotenv.2019.06.448] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2019] [Revised: 06/26/2019] [Accepted: 06/26/2019] [Indexed: 05/15/2023]
Abstract
Ostreopsis cf. ovata is a benthic microalga distributed in tropical and temperate regions worldwide which produces palytoxins (PlTXs). Herein, an electrochemical biosensor for the detection of this toxic microalga is described. The detection strategy involves isothermal recombinase polymerase amplification (RPA) of the target using tailed primers and a sandwich hybridisation assay on maleimide-coated magnetic beads immobilised on electrode arrays. The biosensor attained a limit of detection of 9 pg/μL of O. cf. ovata DNA (which corresponds to ~640 cells/L), with no interferences from two non-target Ostreopsis species (O. cf. siamensis and O. fattorussoi). The biosensor was applied to the analysis of planktonic and benthic environmental samples. Electrochemical O. cf. ovata DNA quantifications demonstrated an excellent correlation with other molecular methods (qPCR and colorimetric assays) and allowed the construction of a predictive regression model to estimate O. cf. ovata cell abundances. This new technology offer great potential to improve research, monitoring and management of O. cf. ovata and harmful algal blooms.
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Affiliation(s)
- Anna Toldrà
- IRTA, Ctra. Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Tarragona, Spain
| | - Carles Alcaraz
- IRTA, Ctra. Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Tarragona, Spain
| | - Jorge Diogène
- IRTA, Ctra. Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Tarragona, Spain
| | - Ciara K O'Sullivan
- Departament d'Enginyeria Química, Universitat Rovira i Virgili, Av. Països Catalans 26, 43007, Tarragona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Pg. Lluís Companys 23, 08010 Barcelona, Spain.
| | - Mònica Campàs
- IRTA, Ctra. Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Tarragona, Spain.
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Toldrà A, O'Sullivan CK, Campàs M. Detecting Harmful Algal Blooms with Isothermal Molecular Strategies. Trends Biotechnol 2019; 37:1278-1281. [PMID: 31399265 DOI: 10.1016/j.tibtech.2019.07.003] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Revised: 07/11/2019] [Accepted: 07/12/2019] [Indexed: 11/24/2022]
Abstract
The use of isothermal nucleic acid amplification strategies to detect harmful algal blooms (HABs) is in its infancy. We describe recent advances in these systems and highlight the challenges for the achievement of simple, low-cost, compact, and portable devices for field applications.
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Affiliation(s)
- Anna Toldrà
- IRTA, Ctra. Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Tarragona, Spain
| | - Ciara K O'Sullivan
- Departament d'Enginyeria Química, Universitat Rovira i Virgili, Av. Països Catalans 26, 43007 Tarragona, Spain; ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain.
| | - Mònica Campàs
- IRTA, Ctra. Poble Nou km 5.5, 43540 Sant Carles de la Ràpita, Tarragona, Spain.
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