In situ mobility of uranium in the presence of nitrate following sulfate-reducing conditions

Humic acid attachment on chitosan-modified silica gel as an economical, efficient, and selective adsorbent for thorium and uranium removal

A novel, low-cost adsorbent material was prepared by the immobilization of humic acid on a silica gel surface coated with cross-linked chitosan (SiChiHA). The adsorbent was developed to remove selectively of Th(IV) and U(VI) from aqueous solution, including their pre-concentration and separation from lanthanides and high salinity conditions. A simple waste-less humic acid immobilization method was shown to be successful based on FT-IR, SEM-EDS, and zeta potential characterization results. The adsorbent was found to be stable over a wide pH range, with the highest capacities obtained at pH 3.5 (Th(IV)) and pH 5 (U(VI)). Langmuir model calculations yielded a maximum capacity of 30.6 mg g^-1 and 75.4 mg g^-1 for Th(IV) and U(VI). The adsorption process was found to be rapid (half concentration was removed within 10 min) and best described by a pseudo-second order rate equation. Increasing NaCl concentration up to 2 mol L^-1 or lanthanide concentration up to 100 times did not significantly affect the removal efficiency for either Th(IV) of U(VI). Both elements could be sequentially separated by elution with ammonium citrate and nitric acid, respectively. The adsorption-desorption experiment showed that the adsorbent could be used for at least five cycles without significant capacity loss. This study provides insight into the development of low-cost adsorbent with practical functionality, including separation and regeneration ability, the advantageous properties scarcely reported in low-cost adsorbent literature.

Elucidating mobilization mechanisms of uranium during recharge of river water to contaminated groundwater

The recharge of stream water below the baseflow water table can mobilize groundwater contaminants, particularly redox-sensitive and sorptive metals such as uranium. However, in-situ tracer experiments that simulate the recharge of stream water to uranium-contaminated groundwater are lacking, thus limiting the understanding of the potential mechanisms that control the mobility of uranium at the field scale. In this study, a field tracer test was conducted by injecting 100 gal (379 l) of oxic river water into a nearby suboxic and uranium-contaminated aquifer. The traced river water was monitored for 18 days in the single injection well and in the twelve surrounding observation wells. Mobilization of uranium from the solid to the aqueous phase was not observed during the tracer test despite its pre-test presence being confirmed on the aquifer sediments from lab-based acid leaching. However, strong evidence of oxidative immobilization of iron and manganese was observed during the tracer test and suggested that immobile uranium was likely in its oxidized state as U(VI) on the aquifer sediments; these observations ruled out oxidation of U(IV) to U(VI) as a potential mobilization mechanism. Therefore, desorption of U(VI) appeared to be the predominant potential mobilization mechanism, yet it was clearly not solely dependent on concentration as evident when considering that uranium-poor river water (<0.015 mg/L) was recharged to uranium-rich groundwater (≈1 mg/L). It was possible that uranium desorption was limited by the relatively higher pH and lower alkalinity of the river water as compared to the groundwater; both factors favor immobilization. However, it was likely that the immobile uranium was associated with a mineral phase, as opposed to a sorbed phase, thus desorption may not have been possible. The results of this field tracer study successfully ruled out two common mobilization mechanisms of uranium: (1) oxidative dissolution and (2) concentration-dependent desorption and ruled in the importance of advection, dispersion, and the mineral phase of uranium.

Threonine Phosphorylation of an Electrochemical Peptide-Based Sensor to Achieve Improved Uranyl Ion Binding Affinity

We have successfully designed a uranyl ion (U(VI)-specific peptide and used it in the fabrication of an electrochemical sensor. The 12-amino acid peptide sequence, (n) DKDGDGYIpTAAE (c), originates from calmodulin, a Ca(II)-binding protein, and contains a phosphothreonine that enhances the sequence's affinity for U(VI) over Ca(II). The sensing mechanism of this U(VI) sensor is similar to other electrochemical peptide-based sensors, which relies on the change in the flexibility of the peptide probe upon interacting with the target. The sensor was systematically characterized using alternating current voltammetry (ACV) and cyclic voltammetry. Its limit of detection was 50 nM, which is lower than the United States Environmental Protection Agency maximum contaminant level for uranium. The signal saturation time was ~40 min. In addition, it showed minimal cross-reactivity when tested against nine different metal ions, including Ca(II), Mg(II), Pb(II), Hg(II), Cu(II), Fe(II), Zn(II), Cd(II), and Cr(VI). Its reusability and ability to function in diluted aquifer and drinking water samples were further confirmed and validated. The response of the sensor fabricated with the same peptide sequence but with a nonphosphorylated threonine was also analyzed, substantiating the positive effects of threonine phosphorylation on U(VI) binding. This study places emphasis on strategic utilization of non-standard amino acids in the design of metal ion-chelating peptides, which will further diversify the types of peptide recognition elements available for metal ion sensing applications.

Sustained Ability of a Natural Microbial Community to Remove Nitrate from Groundwater

Microbial-mediated nitrate removal from groundwater is widely recognized as the predominant mechanism for nitrate attenuation in contaminated aquifers and is largely dependent on the presence of a carbon-bearing electron donor. The repeated exposure of a natural microbial community to an electron donor can result in the sustained ability of the community to remove nitrate; this phenomenon has been clearly demonstrated at the laboratory scale. However, in situ demonstrations of this ability are lacking. For this study, ethanol (electron donor) was repeatedly injected into a groundwater well (treatment) for six consecutive weeks to establish the sustained ability of a microbial community to remove nitrate. A second well (control) located upgradient was not injected with ethanol during this time. The treatment well demonstrated strong evidence of sustained ability as evident by ethanol, nitrate, and subsequent sulfate removal up to 21, 64, and 68%, respectively, as compared to the conservative tracer (bromide) upon consecutive exposures. Both wells were then monitored for six additional weeks under natural (no injection) conditions. During the final week, ethanol was injected into both treatment and control wells. The treatment well demonstrated sustained ability as evident by ethanol and nitrate removal up to 20 and 21%, respectively, as compared to bromide, whereas the control did not show strong evidence of nitrate removal (5% removal). Surprisingly, the treatment well did not indicate a sustained and selective enrichment of a microbial community. These results suggested that the predominant mechanism(s) of sustained ability likely exist at the enzymatic- and/or genetic-levels. The results of this study demonstrated the in situ ability of a microbial community to remove nitrate can be sustained in the prolonged absence of an electron donor.

Hydrogeochemical Processes Governing Uranium Mobility: Inferences from the Anthropogenically Disturbed, Semi-arid Region of India

Khetri Copper Belt, Rajasthan, is anthropogenically active and geologically belongs to the Delhi super-group. A study was designed to understand the geochemical processes controlling the elemental mobility in the groundwater. Sampling sites were divided into three zones, i.e. copper, quartzite and granite mine zones depending on the type of mineral excavated. A total of 32 representative groundwater samples were collected and analysed for heavy metals and radionuclide (U) using ICP-MS. A maximum U concentration (average 87 µgL^-1) is observed in the quartzite mine zone, and minimum (average 13 µgL^-1) is found in the copper mine zone samples. A high concentration of U (maximum of 430 µgL^-1) in groundwater is attributed to mineral dissolution due to geogenic and anthropogenic activities. Despite the presence of Jaspura and Gothra granitoid in the copper mine zone, the abundance of U is low suggesting the scavenging of U by sulphides or iron oxides. Additionally, at the confluence of two geological groups, Fe concentration is found high with a low concentration of U which further confirms scavenging of U. It is evident from the results that in the absence of iron-bearing sulphides, U concentration in groundwater would be very high compared to the current concentration. It also indicates low concentration of U in the copper mine zone is due to dissolution of Fe sulphide-rich waste. The present study recommends further research to understand the feasibility of mining waste for the removal of U contamination from groundwater.

Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology

Over the last century, leaps in technology for imaging, sampling, detection, high-throughput sequencing, and -omics analyses have revolutionized microbial ecology to enable rapid acquisition of extensive datasets for microbial communities across the ever-increasing temporal and spatial scales. The present challenge is capitalizing on our enhanced abilities of observation and integrating diverse data types from different scales, resolutions, and disciplines to reach a causal and mechanistic understanding of how microbial communities transform and respond to perturbations in the environment. This type of causal and mechanistic understanding will make predictions of microbial community behavior more robust and actionable in addressing microbially mediated global problems. To discern drivers of microbial community assembly and function, we recognize the need for a conceptual, quantitative framework that connects measurements of genomic potential, the environment, and ecological and physical forces to rates of microbial growth at specific locations. We describe the Framework for Integrated, Conceptual, and Systematic Microbial Ecology (FICSME), an experimental design framework for conducting process-focused microbial ecology studies that incorporates biological, chemical, and physical drivers of a microbial system into a conceptual model. Through iterative cycles that advance our understanding of the coupling across scales and processes, we can reliably predict how perturbations to microbial systems impact ecosystem-scale processes or vice versa. We describe an approach and potential applications for using the FICSME to elucidate the mechanisms of globally important ecological and physical processes, toward attaining the goal of predicting the structure and function of microbial communities in chemically complex natural environments.

Nitrate-dependent Uranium mobilisation in groundwater

Nitrate is a critical substance that determines the prevailing redox conditions in groundwater, and in turn the behaviour of Uranium (U). Therefore, the excessive use of nitrate-fertiliser in agricultural catchments could exert a significant influence on U mobilisation. This is a significant issue in catchments, where groundwater resources are increasingly being exploited for drinking water production. Past studies on U mobility in groundwater have considered individual hydro-geochemical factors influencing U concentrations, rather than as a single system with multiple factors. This research study investigated nitrate-dependent U mobility within a catchment in Brazil, where a range of intensive agricultural activities are undertaken and the giant Guarani aquifer is located. The study used direct measurements of groundwater redox conditions and other hydro-geochemical parameters. The research outcomes indicated that U could have two hydro-geochemical systems based on positive and negative redox potential of groundwater. The pH, HCO₃^- and temperature pose the largest influence, respectively, on U mobilisation, and these impacts are greater in agricultural lands than urban areas. Acidic and less reducing (positive redox) groundwater across the aquifer and basic and highly reducing (negative redox) groundwater in agricultural areas make U more mobile. The alkalinity increases U mobility in less reducing groundwater across the aquifer and in highly reducing groundwater in agricultural areas. Further, U can be mobile in hot and less reducing groundwater across the aquifer, but hot and highly reducing groundwater in agricultural areas can limit U mobility. More importantly, the study revealed that U can be mobile under high NO₃^- concentrations in reducing groundwater in non-agricultural areas. However, anthropogenic inputs of NO₃^- are expected to be lower than natural NO₃^- inputs in areas where the groundwater is highly reducing. Hence, fertiliser use in agricultural lands is less likely to increase U mobility in highly reducing groundwater.

Uranium sequestration in sediment at an iron-rich contaminated site at Oak Ridge, Tennessee via. bioreduction followed by reoxidation

This study evaluated uranium sequestration performance in iron-rich (30 g/kg) sediment via bioreduction followed by reoxidation. Field tests (1383 days) at Oak Ridge, Tennessee demonstrated that uranium contents in sediments increased after bioreduced sediments were re-exposed to nitrate and oxygen in contaminated groundwater. Bioreduction of contaminated sediments (1200 mg/kg U) with ethanol in microcosm reduced aqueous U from 0.37 to 0.023 mg/L. Aliquots of the bioreduced sediment were reoxidized with O₂, H₂O₂, and NaNO₃, respectively, over 285 days, resulting in aqueous U of 0.024, 1.58 and 14.4 mg/L at pH 6.30, 6.63 and 7.62, respectively. The source- and the three reoxidized sediments showed different desorption and adsorption behaviors of U, but all fit a Freundlich model. The adsorption capacities increased sharply at pH 4.5 to 5.5, plateaued at pH 5.5 to 7.0, then decreased sharply as pH increased from 7.0 to 8.0. The O₂-reoxidized sediment retained a lower desorption efficiency at pH over 6.0. The NO₃^--reoxidized sediment exhibited higher adsorption capacity at pH 5.5 to 6.0. The pH-dependent adsorption onto Fe(III) oxides and formation of U coated particles and precipitates resulted in U sequestration, and bioreduction followed by reoxidation can enhance the U sequestration in sediment.

Uranium storage mechanisms in wet-dry redox cycled sediments

Biogeochemical redox processes that govern radionuclide mobility in sediments are highly sensitive to forcing by the water cycle. For example, episodic draining and intrusion of oxidants into reduced zones during dry seasons can create biogeochemical seasonal hotspots of enhanced and changed microbial activity, affect the redox status of minerals, initiate changes in sediment gas and water transport, and stimulate the release of organic carbon, iron, and sulfur by oxidation of solid reduced species to aqueous oxic species. In the Upper Colorado River Basin, water-saturation of organic-enriched sediments locally promotes reducing conditions, denoted 'Naturally Reduced Zones' (NRZs), that accumulate strongly U(IV)_sol. Subsequently, fluctuating hydrological conditions introduce oxidants, which may reach internal portions of these sediments and reverse their role to become secondary sources of U_aq. Knowledge of the impact of hydrological variability on the alternating import and export of contaminants, including U, is required to predict contaminant mobility and short- and long-term impacts on water quality. In this study, we tracked U, Fe, and S oxidation states and speciation to characterize the variability in redox processes and related U_sol solubility within shallow fine-grained NRZs at the legacy U ore processing site at Shiprock, NM. Previous studies have reported U speciation and behavior in permanently saturated fine-grained NRZ sediments. This is the first report of U behavior in fine-grained NRZ-like sediments that experience repeated redox cycling due to seasonal fluctuations in moisture content. Our results support previous observations that reducing conditions are needed to accumulate U_sol in sediments, but they counter the expectation that U_sol predominantly accumulates as U(IV)_sol; our data reveal that U_sol may accumulate as U(VI)_sol in roughly equal proportion to U(IV)_sol. Surprisingly high abundances of U(VI)_sol confined in transiently saturated fine-grained NRZ-like sediments suggest that redox cycling is needed to promote its accumulation. We propose a new process model, where redox oscillations driven by annual water table fluctuations, accompanied by strong evapotranspiration in low-permeability sediments, promote conversion of U(IV)_sol to relatively immobile U(VI)_sol, which suggests that U_sol is accumulating in a form that is resistant to redox perturbations. This observation contradicts the common idea that U(IV)_sol accumulated in reducing conditions is systematically re-oxidized, solubilized and transported away in groundwater.

Improved Method for Estimating Reaction Rates During Push-Pull Tests

The breakthrough curve obtained from a single-well push-pull test can be adjusted to account for dilution of the injection fluid in the aquifer fluid. The dilution-adjusted breakthrough curve can be analyzed to estimate the reaction rate of a solute. The conventional dilution-adjusted method assumes that the ratios of the concentrations of the nonreactive and reactive solutes in the injection fluid vs. the aquifer fluid are equal. If this assumption is invalid, the conventional method will generate inaccurate breakthrough curves and may lead to erroneous conclusions regarding the reactivity of a solute. In this study, a new method that generates a dilution-adjusted breakthrough curve was theoretically developed to account for any possible combination of nonreactive and reactive solute concentrations in the injection and aquifer fluids. The newly developed method was applied to a field-based data set and was shown to generate more accurate dilution-adjusted breakthrough curves. The improved dilution-adjusted method presented here is simple, makes no assumptions regarding the concentrations of the nonreactive and reactive solutes in the injection and aquifer fluids, and easily allows for estimating reaction rates during push-pull tests.

In situ decay of polyfluorinated benzoic acids under anaerobic conditions

Polyfluorinated benzoic acids (PBAs) can be used as non-reactive tracers to characterize reactive mass transport mechanisms in groundwater. The use of PBAs as non-reactive tracers assumes that their reactivities are negligible. If this assumption is not valid, PBAs may not be appropriate to use as non-reactive tracers. In this study, the reactivity of two PBAs, 2,6-difluorobenzoic acid (2,6-DFBA) and pentafluorobenzoic acid (PFBA), was tested in situ. A series of two single-well push-pull tests were conducted in two hydrogeologically similar, yet spatially distinct, groundwater monitoring wells. Bromide, 2,6-DFBA, and PFBA were added to the injection fluid and periodically measured in the extraction fluid along with chloride, nitrate, sulfate, and fluoride. Linear regression of the dilution-adjusted breakthrough curves of both PBAs indicated zero-order decay accompanied by nitrate and subsequent sulfate removal. The dilution-adjusted breakthrough curves of chloride, a non-reactive halide similar to bromide, showed no evidence of reactivity. These results strongly suggested that biodegradation of both PBAs occurred under anaerobic conditions. The results of this study implied that PBAs may not be appropriate to use as non-reactive tracers in certain hydrogeologic settings, presumably those where they can serve as carbon and/or electron donors to stimulate microbial activity. Future studies would benefit from using ring-¹⁴C-labeled PBAs to determine the fate of carbon combined with microbial analyses to characterize the PBA-degrading members of the microbial community.

Field Application of 238U/235U Measurements To Detect Reoxidation and Mobilization of U(IV)

Biostimulation to induce reduction of soluble U(VI) to relatively immobile U(IV) is an effective strategy for decreasing aqueous U(VI) concentrations in contaminated groundwater systems. If oxidation of U(IV) occurs following the biostimulation phase, U(VI) concentrations increase, challenging the long-term effectiveness of this technique. However, detecting U(IV) oxidation through dissolved U concentrations alone can prove difficult in locations with few groundwater wells to track the addition of U to a mass of groundwater. We propose the ²³⁸U/²³⁵U ratio of aqueous U as an independent, reliable tracer of U(IV) remobilization via oxidation or mobilization of colloids. Reduction of U(VI) produces ²³⁸U-enriched U(IV), whereas remobilization of solid U(IV) should not induce isotopic fractionation. The incorporation of remobilized U(IV) with a high ²³⁸U/²³⁵U ratio into the aqueous U(VI) pool produces an increase in ²³⁸U/²³⁵U of aqueous U(VI). During several injections of nitrate to induce U(IV) oxidation, ²³⁸U/²³⁵U consistently increased, suggesting ²³⁸U/²³⁵U is broadly applicable for detecting mobilization of U(IV).

Contrasting growth properties of Nocardioides JS614 on threedifferent vinyl halides

Ethene (ETH)-grown inocula of Nocardioides JS614 grow on vinyl chloride (VC), vinyl fluoride (VF), or vinyl bromide (VB) as the sole carbon and energy source, with faster growth rates and higher cell yields on VC and VF than on VB. However, whereas acetate-grown inocula of JS614 grow on VC and VF after a lag period, growth on VB did not occur unless supplemental ethene oxide (EtO) was present in the medium. Despite inferior growth on VB, the maximum rate of VB consumption by ETH-grown cells was ~ 50% greater than the rates of VC and VF consumption, but Br^- release during VB consumption was non-stoichiometric with VB consumption (~ 66%) compared to 100% release of Cl^- and F^- during VC and VF consumption. Evidence was obtained for VB turnover-dependent toxicity of cell metabolism in JS614 with both acetate-dependent respiration and growth being significantly reduced by VB turnover, but no VC or VF turnover-dependent toxicity of growth was detected. Reduced growth rate and cell yield of JS614 on VB probably resulted from a combination of inefficient metabolic processing of the highly unstable VB epoxide (t_0.5 = 45 s), accompanied by growth inhibitory effects of VB metabolites on acetate-dependent metabolism. The exact role(s) of EtO in promoting growth of alkene repressed JS614 on VB remains unresolved, with evidence of EtO inducing epoxide consuming activity prior to an increase in alkene oxidizing activity and supplementing reductant supply when VB is the growth substrate.

Oxidative Uranium Release from Anoxic Sediments under Diffusion-Limited Conditions

Uranium (U) contamination occurs as a result of mining and ore processing; often in alluvial aquifers that contain organic-rich, reduced sediments that accumulate tetravalent U, U(IV). Uranium(IV) is sparingly soluble, but may be mobilized upon exposure to nitrate (NO₃^-) and oxygen (O₂), which become elevated in groundwater due to seasonal fluctuations in the water table. The extent to which oxidative U mobilization can occur depends upon the transport properties of the sediments, the rate of U(IV) oxidation, and the availability of inorganic reductants and organic electron donors that consume oxidants. We investigated the processes governing U release upon exposure of reduced sediments to artificial groundwater containing O₂ or NO₃^- under diffusion-limited conditions. Little U was mobilized during the 85-day reaction, despite rapid diffusion of groundwater within the sediments and the presence of nonuraninite U(IV) species. The production of ferrous iron and sulfide in conjunction with rapid oxidant consumption suggested that the sediments harbored large concentrations of bioavailable organic carbon that fueled anaerobic microbial respiration and stabilized U(IV). Our results suggest that seasonal influxes of O₂ and NO₃^- may cause only localized mobilization of U without leading to export of U from the reducing sediments when ample organic carbon is present.

Redox Roll-Front Mobilization of Geogenic Uranium by Nitrate Input into Aquifers: Risks for Groundwater Resources

Redox conditions are seen as the key to controlling aqueous uranium concentrations (cU_(aq)). Groundwater data collected by a state-wide groundwater quality monitoring study in Mecklenburg-Western Pomerania (Germany) reveal peak cU_(aq) up to 75 μg L^-1 but low background uranium concentrations (median cU_(aq) < 0.5 μg L^-1). To characterize the hydrogeochemical processes causing such groundwater contamination by peak cU_(aq), we reanalyzed measured redox potentials and total concentrations of aqueous uranium, nitrate, and sulfate species in groundwater together with their distribution across the aquifer depth and performed semigeneric 2D reactive mass transport modeling which is based on chemical thermodynamics. The combined interpretation of modeling results and measured data reveals that high cU_(aq) and its depth-specific distribution depending on redox conditions is a result of a nitrate-triggered roll-front mobilization of geogenic uranium in the studied aquifers which are unaffected by nuclear activities. The modeling results show that groundwater recharge containing (fertilizer-derived) nitrate drives the redox shift from originally reducing toward oxidizing environments, when nitrate input has consumed the reducing capacity of the aquifers, which is present as pyrite, degradable organic carbon, and geogenic U(IV) minerals. This redox shift controls the uranium roll-front mobilization and results in high cU_(aq) within the redoxcline. Moreover, the modeling results indicate that peak cU_(aq) occurring at this redox front increase along with the temporal progress of such redox conversion within the aquifer.

Metagenomic applications in environmental monitoring and bioremediation

With the rapid advances in sequencing technology, the cost of sequencing has dramatically dropped and the scale of sequencing projects has increased accordingly. This has provided the opportunity for the routine use of sequencing techniques in the monitoring of environmental microbes. While metagenomic applications have been routinely applied to better understand the ecology and diversity of microbes, their use in environmental monitoring and bioremediation is increasingly common. In this review we seek to provide an overview of some of the metagenomic techniques used in environmental systems biology, addressing their application and limitation. We will also provide several recent examples of the application of metagenomics to bioremediation. We discuss examples where microbial communities have been used to predict the presence and extent of contamination, examples of how metagenomics can be used to characterize the process of natural attenuation by unculturable microbes, as well as examples detailing the use of metagenomics to understand the impact of biostimulation on microbial communities.