Farmyards, an overlooked source for highly contaminated runoff

Managing phosphorus input pressures for improving water quality at the catchment scale

Phosphorus (P) pollution of freshwater is an endemic threat to water quality and aquatic biodiversity. To better define the contributions of the two main food system sectors (agriculture and wastewater) responsible for freshwater P pollution, we investigated how the magnitude and distribution of sector P input pressures calculated using Substance Flow Analysis (SFA) linked to the P pollution threat across four distinct physiographic regions of the River Stour catchment (1260 km2) in Dorset, England. Agricultural P input pressures (-1 to 7 kg ha-1 yr-1) were dependent on the amount of livestock feed imports and resulting manure loadings to land, whilst food imports and population densities were the main driver of the human net P inputs of up to 13 kg ha-1 yr-1. Total P input pressures (i.e. Net Anthropogenic P Inputs (NAPI)) were positively correlated (r2 0.8-0.9) to riverine P flux of up to 6 kg ha-1 yr-1 across the catchment. Using measured river P concentration (C) and flow discharge (Q) analysis to distinguish monitoring stations capturing mainly diffuse P sources (termed diffuse stations), estimated riverine P fluxes attributable to agriculture varied up to 0.92 kg ha-1 yr-1 depending on the surplus P inputs applied to land. A combination of enhanced wastewater P removal and reduced surplus agricultural P inputs was required to improve water quality. For example, the P pressure-river P flux relationship at diffuse stations suggested that in the catchment area dominated by livestock production, removing the agricultural P surplus of 7 kg ha-1 yr-1 would reduce annual average river SRP concentrations in this area by a third to 0.23 mg L-1, but still well above the target concentration for eutrophication control (0.08 mg L-1). Our approach of linking SFA outputs to measured river P data provides a potential complimentary and internationally relevant methodology to evidence effective sector mitigation targets and policies in catchments, and its further testing in other catchments is recommended.

Assessment of seasonal and annual patterns in phosphorus content in a monitored catchment through a partitioning approach based on hydrometeorological data

High amounts of phosphorus (P) in rivers come mainly from two sources: fertilizers washed off from agricultural and urban areas by runoff water (non-point sources) and urban and industrial development which are translated in P discharges from wastewater treatment plants (WWTP). This work analyses the content of P in water for nearly 40 years inquiring into the origin of the sources, based on the hypothesis of runoff generation from the detection of river streamflow increases during the P contribution episode and the previous precipitation. For this purpose, the Guadaira River, which is located in the South of Spain and has a drainage surface of 1524 km2, was selected. In this watershed agricultural land use converges with numerous human activities resulting in high pressures on water quality. We found 40% of the P contribution episodes found seem to come from the runoff generated after the heaviest rainfall events, which normally occur between November and May. The remaining 60% of the P contribution episodes were found to be linked to point sources, which become more relevant from June to September, reaching the highest concentration values (6-17 mg/L). The results highlight that the target phosphate concentration value of 0.34 mg PO4/L imposed by the national legislation for a good state following the Water Framework Directive 2000/60/EC is exceeded by 96% of the measurements during the period from 1981 to 2022. On a monthly basis, PO4 loads showed a linear relationship with river streamflow (R2 = 0.94). However, on field measurements scale, a potential relationship between both variables was found, which changed according to the improvement in the wastewater treatment and facilities for 1982-1994, 1995-2017 and 2018-2022. In these three periods, different significant decreasing trends of the P content were found, mainly marked by the setup of each individual WWTP.

Exploring the Bacterial Community in Aged Fecal Sources from Dairy Cows: Impacts on Fecal Source Tracking

(1) Background: This paper discusses the impact of agricultural activities on stream health, particularly in relation to dairy cow fecal pollution. The study explores the fecal microbiome of cattle and the potential ecological implications of aging fecal pollution on waterways. (2) Methods: The study examines changes in the bacterial community available for mobilization from in-situ decomposing cowpats and the effects of simulated rainfall. The microbiome of individual cowpats was monitored over 5.5 months. We used 16S rRNA metagenomics and machine learning software, FEAST (Fast Expectation-mAximization for microbial Source Tracking), for bacterial and fecal source assignments. (3) Results: The phyla Bacillota and Bacteroidota are dominant in the fecal microbiota of fresh cow feces but shift to Pseudomonodota, Actinomycetota, and environmental Bacteroidota in aged cowpats. Potential impacts of these bacterial community shifts on inputs to local agricultural streams are discussed in relation to water quality monitoring and aging sources of fecal contamination. We identified taxon orders that are potential indicators of fresh cattle sources (Oscillospirales and Bacteroidales) and aged sources (Peptostreptococcales-Tissierellales) in water bodies. (4) The paper highlights that bacterial metagenomic profiling can inform our understanding of the ecology of microbial communities in aquatic environments and the potential impacts of agricultural activities on ecosystem health.

Prevalence and molecular analysis of Cryptosporidium spp. collected from surface water

Cryptosporidium is an obligate intracellular parasite reported from all over the world. This protozoan infects a wide range of animals as well as humans. Cryptosporidium parvum and Cryptosporidium hominis are the most prevalent infecting species with mild and self-limiting infection in healthy people. The protozoan oocyst is resistant to common water purifiers. Based on emerging evidence, Cryptosporidium is one of waterborne parasites considered a major public health problem in developing and developed countries. In this study, 42 samples were collected from 14 rivers in the catchment area of Lake Urmia in northwest of Iran. Moreover, amplification of SSU rRNA gene was performed, and polymerase chain reaction products were sequenced. The results of sequencing and comparing the sequences with those in the GenBank revealed that all the 17 positive samples were C. parvum, a zoonotic species and one of the most frequent human-infecting species. Considering these data, it is highly important to inhibit the spread of this protozoan by treating livestock and preventing human and animal effluents from entering the water.

Applying the nutrient transfer continuum framework to phosphorus and nitrogen losses from livestock farmyards to watercourses

Farmyards are commonly conceptualized as point sources of nutrient pollution nested within the wider agricultural landscape. However, within farmyards there are individual sources and delivery pathways, each of which is affected by a range of management practices and infrastructure. Rainfall mobilizes these nutrients, which may then be delivered to a receptor or to the wider drainage network. As such, the nutrient transfer continuum (NTC), which has been established as a framework to understand and mitigate nutrient loss at a landscape scale, can be similarly applied to disentangle the stages of nutrient transfer from farmyards. The NTC differentiates nutrient transfer into source, mobilization, delivery, and impact stages. This differentiation allows targeting of mitigation measures and evaluation of costs and benefits. This review paper applies the NTC template to farmyard nitrogen and phosphorus transport to conceptualize causative factors and to identify mitigation options.

Prevalence of Cryptosporidium spp. in water: a global systematic review and meta-analysis

Cryptosporidium spp., as a genus of protozoan intestinal parasites, is recognized as responsible for cryptosporidiosis. The present study was conducted to provide an overview of the prevalence of Cryptosporidium based on water. In this regard, some databases such as Scopus, PubMed, Embase, and Web of Science were screened in order to retrieve the related citations from 1 January 1983 to 10 September 2019. The pooled prevalence of Cryptosporidium spp. was calculated by using a random effect model (REM) based on defined subgroups, including countries, water type, treatment conditions (treated and untreated), economic condition, World Health Organization (WHO) regions, and method of detection. In contrast, this index for treated and untreated water was 25.7% and 40.1%, respectively. Also, the overall prevalence of Cryptosporidium spp. among all water types was defined as 36 (95% CI: 31.4-40.7). The rank order of prevalence of Cryptosporidium spp. based on water type was wastewater (46.9%) > surface water (45.3%) > raw water (31.6%) > drinking water (25.5%) > reservoirs water (24.5%) > groundwater (18.8%) > swimming pool water (7.5%) > marine water (0.20%). Identifying the key contributing factors to Cryptosporidium spp. survival can help provide solutions at both local and global scales.

The problem of agricultural 'diffuse' pollution: Getting to the point

Despite introduction of legislation such as the EU Nitrates and Water Framework Directives (Directives 91/676/EEC and 2000/60/EC respectively), agricultural practices are often still regarded as a major factor in poor water quality across many EU member states. Elevated inputs of nutrients, organic matter and agro-chemicals to receiving waters from agricultural lands in particular are now widely recognised as potentially major causes of deteriorating water quality. Such inputs may emanate from diffuse sources such as agricultural fields, and small point- or intermediate-sources, including farmyards and farm trackways. However, while inputs from these latter intermediate sources may be substantial, their overall contribution to catchment-wide water quality at high temporal or spatial resolution is still largely unknown. In this study, we surveyed water chemistry throughout the multiple natural and artificial watercourses within a single drainage network at high spatial resolution in a predominantly dairy farming area in Southern Ireland. We found that most headwaters at the time of study were impacted by organic inputs via drainage ditches emanating from the vicinity of farmyards. These farmyard drains were found to have elevated concentrations of ammonium, phosphorus, potassium, suspended sediment and biochemical oxygen demand above background levels in the study catchment. Concomitant assessment of macro-invertebrate communities at study sites indicated that the ecological quality of headwaters was also impaired by these inputs. The individual and aggregate contributions of farmyard drains to water quality within a single catchment, when mapped at high spatial resolution, indicates that they constitute a major contribution to catchment scale 'diffuse' agricultural inputs. However, our data also suggest that engineering farmyard drains to maximise their retention and attenuation function may prove to be a cost-effective means of mitigating the effects of point source farmyard inputs.

How can we improve understanding of faecal indicator dynamics in karst systems under changing climatic, population, and land use stressors? - Research opportunities in SW China

Human exposure to water contaminated with faeces is a leading cause of worldwide ill-health. Contaminated water can be transmitted rapidly in karst terrain as a result of the connectivity of surface and groundwater systems, high transmissivity of aquifers over large areas, and well-developed underground conduit systems. Faecal indicator organisms (FIOs) are the most widely-used indicator of faecal contamination and microbial water quality; however, the conceptualisation of FIO risk and associated sources, pathways, and survival dynamics of FIOs in karst landscapes requires a degree of modification from traditional conceptual models of FIO fate and transfer in non-karst systems. While a number of reviews have provided detailed accounts of the state-of-the-science concerning FIO dynamics in catchments, specific reference to the uniqueness of karst and its influence on FIO fate and transfer is a common omission. In response, we use a mixed methods approach of critical review combined with a quantitative survey of 372 residents of a typical karst catchment in the southwest China karst region (SWCKR) to identify emerging research needs in an area where much of the population lives in poverty and is groundwater dependent. We found that the key research needs are to understand: 1) overland and subsurface FIO export pathways in karst hydrology under varying flow conditions; 2) urban and agricultural sources and loading in mixed land-use paddy farming catchments; 3) FIO survival in paddy farming systems and environmental matrices in karst terrain; 4) sediment-FIO interactions and legacy risk in karst terrain; and 5) key needs for improved hydrological modelling and risk assessment in karst landscapes. Improved knowledge of these research themes will enable the development of evidence-based faecal contamination mitigation strategies for managing land and water resources in the SWCKR, which is highly vulnerable to climate change impacts on water supply and quality of water resources.

Assessing the Yield and Load of Contaminants with Stream Order: Would Policy Requiring Livestock to Be Fenced Out of High-Order Streams Decrease Catchment Contaminant Loads?

Catchment contaminant loads vary with stream order as catchment characteristics influence inputs and in-stream processing. However, the relative influence and policy significance of these characteristics across a number of contaminants and at a national scale is unclear. We modeled the significance of catchment characteristics (e.g., climate, topography, geology, land cover), as captured by a national-scale River Environment Classification (REC) system, and stream order in the estimation of contaminant yields. We used this model to test if potential regulation in New Zealand requiring livestock to be fenced off from large (high)-order streams would substantially decrease catchment contaminant loads. Concentration and flow data for 1998 to 2009 were used to calculate catchment load and yields of nitrogen (N) and phosphorus (P) species, suspended sediment, and at 728 water quality monitoring sites. On average, the yields of all contaminants increased with increasing stream order in catchments dominated by agriculture (generally lowland and pastoral REC land cover classes). Loads from low-order small streams (<1 m wide, 30 cm deep, and in flat catchments dominated by pasture) exempt from potential fencing regulations accounted for an average of 77% of the national load (varying from 73% for total N to 84% for dissolved reactive P). This means that to substantially reduce contaminant losses, other mitigations should be investigated in small streams, particularly where fencing of larger streams has low efficacy.

The oxygen isotopic composition of phosphate in river water and its potential sources in the Upper River Taw catchment, UK

The need to reduce both point and diffuse phosphorus pollution to aquatic ecosystems is widely recognised and in order to achieve this, identification of the different pollutant sources is essential. Recently, a stable isotope approach using oxygen isotopes within phosphate (δ¹⁸O_PO4) has been used in phosphorus source tracing studies. This approach was applied in a one-off survey in September 2013 to the River Taw catchment in south-west England where elevated levels of phosphate have been reported. River water δ¹⁸O_PO4 along the main channel varied little, ranging from +17.1 to +18.8‰. This was no >0.3‰ different to that of the isotopic equilibrium with water (Eδ¹⁸O_PO4). The δ¹⁸O_PO4 in the tributaries was more variable (+17.1 to +18.8‰), but only deviated from Eδ¹⁸O_PO4 by between 0.4 and 0.9‰. Several potential phosphate sources within the catchment were sampled and most had a narrow range of δ¹⁸O_PO4 values similar to that of river Eδ¹⁸O_PO4. Discharge from two waste water treatment plants had different and distinct δ¹⁸O_PO4 from one another ranging between +16.4 and +19.6‰ and similar values to that of a dairy factory final effluent (+16.5 to +17.8‰), mains tap water (+17.8 to +18.4‰), and that of the phosphate extracted from river channel bed sediment (+16.7 to +17.6‰). Inorganic fertilizers had a wide range of values (+13.3 to +25.9‰) while stored animal wastes were consistently lower (+12.0 to +15.0‰) than most other sources and Eδ¹⁸O_PO4. The distinct signals from the waste water treatment plants were lost within the river over a short distance suggesting that rapid microbial cycling of phosphate was occurring, because microbial cycling shifts the isotopic signal towards Eδ¹⁸O_PO4. This study has added to the global inventory of phosphate source δ¹⁸O_PO4 values, but also demonstrated the limitations of this approach to identifying phosphate sources, especially at times when microbial cycling is high.

Using microbiological tracers to assess the impact of winter land use restrictions on the quality of stream headwaters in a small catchment

Diverse land use activities can elevate risk of microbiological contamination entering stream headwaters. Spatially distributed water quality monitoring carried out across a 17 km(2) agricultural catchment aimed to characterize microbiological contamination reaching surface water and investigate whether winter agricultural land use restrictions proved effective in addressing water quality degradation. Combined flow and concentration data revealed no significant difference in fecal indicator organism (FIO) fluxes in base flow samples collected during the open and prohibited periods for spreading organic fertilizer, while relative concentrations of Escherichia coli, fecal streptococci and sulfite reducing bacteria indicated consistently fresh fecal pollution reached aquatic receptors during both periods. Microbial source tracking, employing Bacteroides 16S rRNA gene markers, demonstrated a dominance of bovine fecal waste in river water samples upstream of a wastewater treatment plant discharge during open periods. This contrasted with responses during prohibited periods where human-derived signatures dominated. Differences in microbiological signature, when viewed with hydrological data, suggested that increasing groundwater levels restricted vertical infiltration of effluent from on-site wastewater treatment systems and diverted it to drains and surface water. Study results reflect seasonality of contaminant inputs, while suggesting winter land use restrictions can be effective in limiting impacts of agricultural wastes to base flow water quality.

Quantifying faecal indicator organism hydrological transfer pathways and phases in agricultural catchments

Faecal indicator organisms (FIOs) can impact on water quality and pose a health and environmental risk. The transfer of FIOs, such as Escherichia coli (E. coli), from land to water is driven by hydrological connectivity and may follow the same flowpaths as nutrients, from agricultural and human sources. This study investigated E. coli transfer in two catchment areas with high source and transport pressures. These pressures were: organic phosphorus (P) loading; human settlement; conduits and fissures in a grassland karst area; and clay rich and impermeable soils in a mixed arable area. The occurrence of E. coli and its transport pathways, along with the pathways of nutrients, were studied using a combination of targeted FIO sampling, during different hydrological phases and events, and high resolution nutrient analysis. The quick flow component in both catchments was found to be a more potent vector for E. coli, and was coincident with the total P flowpaths using a P Loadograph Recession Analysis (LRA). The karst grassland catchment was found to be a transport limited system and the mixed arable catchment a source limited system. Hence, despite the grassland catchment being a potentially higher FIO source, the E. coli loads leaving the catchment were low compared to the mixed arable catchment. E. coli load whole-event comparisons also indicated that the grassland karst transfers tended to be much lower on falling phases of runoff, while the arable catchment, over greywacke and mudstone geology, showed little change between the phases. Furthermore, the arable catchment showed asymptotic decline of sustained E. coli loads towards low flows, which may be indicative of chronic point sources. These results indicate the dominance of transport mechanisms over source mechanisms for mass E. coli loads and also chronic loads during low flow. These will be important considerations for risk assessment and mitigation.

Intensive management in grasslands causes diffuse water pollution at the farm scale

Arable land use is generally assumed to be the largest contributor to agricultural diffuse pollution. This study adds to the growing evidence that conventional temperate intensively managed lowland grasslands contribute significantly to soil erosion and diffuse pollution rates. This is the first grassland study to monitor hydrological characteristics and multiple pollutant fluxes (suspended sediment [SS] and the macronutrients: total oxidized nitrogen-N [TON], total phosphorus [TP], and total carbon [TC]) at high temporal resolution (monitoring up to every 15 min) over 1 yr. Monitoring was conducted across three fields (6.5-7.5 ha) on the North Wyke Farm Platform, UK. The estimated annual erosion rates (up to 527.4 kg ha), TP losses (up to 0.9 kg ha), and TC losses (up to 179 kg ha) were similar to or exceeded the losses reported for other grassland, mixed land-use, and arable sites. Annual yields of TON (up to 3 kg ha) were less than arable land-use fluxes and earlier grassland N studies, an important result as the study site is situated within a Nitrate Vulnerable Zone. The high-resolution monitoring allowed detailed "system's functioning" understanding of hydrological processes, mobilization- transport pathways of individual pollutants, and the changes of the relative importance of diffuse pollutants through flow conditions and time. Suspended sediment and TP concentrations frequently exceeded water quality guidelines recommended by the European Freshwater Fisheries Directive (25 mg L) and the European Water Framework Directive (0.04 mg soluble reactive P L), suggesting that intensively managed grasslands pose a significant threat to receiving surface waters. Such sediment and nutrient losses from intensively managed grasslands should be acknowledged in land management guidelines and advice for future compliance with surface water quality standards.

A review of ion and metal pollutants in urban green water infrastructures

In urban environments, the breakdown of chemicals and pollutants, especially ions and metal compounds, can be favoured by green water infrastructures (GWIs). The overall aim of this review is to set the basis to model GWIs using deterministic approaches in contrast to empirical ones. If a better picture of chemicals and pollutant input and an improved understanding of hydrological and biogeochemical processes affecting these pollutants were known, GWIs could be designed to efficiently retain these pollutants for site-specific meteorological patterns and pollutant load. To this end, we surveyed the existing literature to retrieve a comprehensive dataset of anions and cations, and alkaline and transition metal pollutants incoming to urban environments. Based on this survey, we assessed the pollution load and ecological risk indexes for metals. The existing literature was then surveyed to review the metal retention efficiency of GWIs, and possible biogeochemical processes related to inorganic metal compounds were proposed that could be integrated in biogeochemical models of GWIs.

Measurement and conceptual modelling of herbicide transport to field drains in a heavy clay soil with implications for catchment-scale water quality management

Propyzamide and carbetamide are essential for blackgrass control in oilseed rape production. However, both of these compounds can contaminate surface waters and pose compliance problems for water utilities. The transport of propyzamide and carbetamide to an instrumented field drain in a small clay headwater tributary of the Upper Cherwell catchment was monitored over a winter season. Despite having very different sorption and dissipation properties, both herbicides were transported rapidly to the drain outlet in the first storm event after application, although carbetamide was leached more readily than propyzamide. A simple conceptual model was constructed to represent solute displacement from mobile pore water and preferential flow to drains. The model was able to reproduce the timing and magnitude of herbicide losses well, lending support to its conceptual basis. Measured losses in drainflow in the month following application were 1.1 and 8.1%, respectively, for propyzamide and carbetamide. Differences were due to a combination of differences in herbicide mobility and due to the fact that the monitoring period for carbetamide was hydrologically more active. For both compounds, losses were greater than those typically reported elsewhere for other herbicides. The data suggest that drainflow is the dominant pathway for the transfer of these herbicides to the catchment outlet, where water is abstracted for municipal supply. This imposes considerable constraints on the management options available to reduce surface water concentrations of herbicides in this catchment.

Source strengths, transport pathways and delivery mechanisms of nutrients, suspended solids and coliforms within a small agricultural headwater catchment

Analysis of water samples and accompanying flow data collected (on ~100 occasions) from well defined land drain outlets located in a small catchment in NE Scotland were made over a five year period. The complex relationship between individual sources that can exist even within a small (200 ha) agriculturally managed headwater catchment was clearly evident. On average ~60% of the measured flow from the catchment outlet was accounted for, with ~50% originating from field drains and 10% from the farmyard. Certain field drains stopped flowing during the summer. Flow from the farmyard was continuous, and because livestock were present all year round also represented a renewable source of potential contaminants. The majority of nitrate and suspended sediment originated directly from field drainage. The variability in nitrate concentration between individual field drains was large and probably reflected differences in soil drainage properties. Farmyard drainage contributed a large proportion of the ammonium, phosphate and Faecal Indicator Organisms (FIO) measured as a flux from the catchment. On numerous sampling occasions the combined flux from individual sources was greater than the corresponding loss measured at the catchment outlet. This was attributed to result from the temporary storage/retention mechanisms (sedimentation, transformation or biological uptake/exchange) that can operate within the stream channel. Despite many fields being grazed and/or receiving regular applications of slurry/manure, the majority ~60% of the total flux of FIO still originated from the 'farmyard', with significant contributions from the field drains only occurring during the autumn. The presence of field drinkers and secure well maintained fencing denying cattle access to the open drainage channel (often a recommended best management practice) may well have contributed to this observation. Benefits to water quality that might arise from riparian management, such as buffer strips in this particular situation may be limited due to the dominant contribution originating from land drains and farmyard.

Effect of climate and farm environment on Campylobacter spp. colonisation in Norwegian broiler flocks

Campylobacteriosis is the most frequently reported zoonosis in the EU. A recent report states that between 50% and 80% of the human campylobacteriosis cases could be attributed to broiler as a reservoir. The current study was conducted to investigate associations between the presence of Campylobacter spp. in Norwegian broiler flocks and factors related to the climate and the farm environment. Data from 18,488 broiler flocks from 623 different farms during 2002-2007 were included in the study. A logistic regression analysis was conducted where Campylobacter spp. status of a broiler flock at the time of slaughter was defined as the dependent variable and farm was modelled as a random effect. The following factors were found to increase the probability for a broiler flock to test positive for Campylobacter spp.: daily mean temperature above 6°C during the rearing period, private water supply, presence of other livestock farms within a distance of 2 km, presence of other broiler farms within a distance of 4 km with flocks positive for Campylobacter spp. within 30 days prior to slaughter, heavy rainfall 11-30 days prior to slaughter, region and year. Daily mean temperature below 0°C reduced the probability. The study emphasises the importance of the farm environment and the climate for the occurrence of Campylobacter spp. in broiler flocks. The farm environment is probably a part of the Campylobacter spp. pathway into and between broiler flocks where farmyard run-off and humans or flies entering the houses might constitute vehicles transporting the organism. Fly activity is temperature-driven and flies might be a part of the explanation of the increased risk for Campylobacter spp. related to increased temperature demonstrated in the study.

A novel application of natural fluorescence to understand the sources and transport pathways of pollutants from livestock farming in small headwater catchments

This paper demonstrates the application of a low-cost and rapid natural fluorescence technique for tracing and quantifying the transport of pollutants from livestock farming through a small headwater catchment. Fluorescence intensities of Dissolved Organic Matter (DOM) present in different pollutant sources and drainage waters in the Den Brook catchment (Devon, UK) were monitored through storm events occurring between January 2007 and June 2008. Contrasting fluorescence signals from different sources confirmed the technique's usefulness as a tracer of pollutants from livestock farming. Changes in fluorescence intensities of drainage waters throughout storm events were used to assess the dynamics of key pollutant sources. The farmyard area of the catchment studied was shown to contribute polluted runoff at the onset of storm events in response to only small amounts of rain, when flows in the Den Brook first-order channel were low. The application of slurry to a field within the catchment did not elevate the fluorescence of drainage waters during storm events suggesting that when slurry is applied to undrained fields the fluorescent DOM may become quickly adsorbed onto soil particles and/or immobilised through bacterial breakdown. Fluorescence intensities of drainage waters were successfully combined with discharge data in a two component mixing model to estimate pollutant fluxes from key sources during the January 2007 storm event. The farmyard was shown to be the dominant source of tryptophan-like material, contributing 61-81% of the total event flux at the catchment outlet. High spatial and temporal resolution measurements of fluorescence, possibly using novel in-situ fluorimeters, may thus have great potential in quickly identifying and quantifying the presence, dynamics and sources of pollutants from livestock farming in catchments.

SIMS(DAIRY): a modelling framework to identify sustainable dairy farms in the UK. Framework description and test for organic systems and N fertiliser optimisation

Multiple demands are placed on farming systems today. Society, national legislation and market forces seek what could be seen as conflicting outcomes from our agricultural systems, e.g. food quality, affordable prices, a healthy environmental, consideration of animal welfare, biodiversity etc., Many of these demands, or desirable outcomes, are interrelated, so reaching one goal may often compromise another and, importantly, pose a risk to the economic viability of the farm. SIMS(DAIRY), a farm-scale model, was used to explore this complexity for dairy farm systems. SIMS(DAIRY) integrates existing approaches to simulate the effect of interactions between farm management, climate and soil characteristics on losses of nitrogen, phosphorus and carbon. The effects on farm profitability and attributes of biodiversity, milk quality, soil quality and animal welfare are also included. SIMS(DAIRY) can also be used to optimise fertiliser N. In this paper we discuss some limitations and strengths of using SIMS(DAIRY) compared to other modelling approaches and propose some potential improvements. Using the model we evaluated the sustainability of organic dairy systems compared with conventional dairy farms under non-optimised and optimised fertiliser N use. Model outputs showed for example, that organic dairy systems based on grass-clover swards and maize silage resulted in much smaller total GHG emissions per l of milk and slightly smaller losses of NO(3) leaching and NO(x) emissions per l of milk compared with the grassland/maize-based conventional systems. These differences were essentially because the conventional systems rely on indirect energy use for 'fixing' N compared with biological N fixation for the organic systems. SIMS(DAIRY) runs also showed some other potential benefits from the organic systems compared with conventional systems in terms of financial performance and soil quality and biodiversity scores. Optimisation of fertiliser N timings and rates showed a considerable scope to reduce the (GHG emissions per l milk too).

A whole water catchment approach to investigating the origin and distribution of Cryptosporidium species

AIMS

Investigating the distribution and origin of Cryptosporidium species in a water catchment affected by destocking and restocking of livestock as a result of a foot and mouth disease epidemic.

METHODS AND RESULTS

Surface water, livestock and wildlife samples were screened for Cryptosporidium and oocysts characterised by sequencing SSU rRNA and COWP loci, and fragment analysis of ML1, ML2 and GP60 microsatellite loci. Oocyst concentrations in water samples (0-20.29 per 10 l) were related to rainfall events, amount of rainfall and topography. There was no detectable impact from catchment restocking. Cryptosporidium spp. found in water were indicative of livestock (Cryptosporidium andersoni and Cryptosporidium parvum) and wildlife (novel genotypes) sources. However, C. andersoni was not found in any animals sampled. Calf infections were age related; C. parvum was significantly more common in younger animals (<4 weeks old). Older calves shared Cryptosporidium bovis, Cryptosporidium ryanae and C. parvum. Wildlife shed C. parvum, Cryptosporidium ubiquitum, muskrat genotype II and deer genotype.

CONCLUSIONS

Several factors affect the occurrence of Cryptosporidium within a catchment. In addition to farmed and wild animal hosts, topography and rainfall patterns are particularly important.

SIGNIFICANCE AND IMPACT OF THE STUDY

These factors must be considered when undertaking risk-based water safety plans.

An evaluation of catchment-scale phosphorus mitigation using load apportionment modelling

Functional relationships between phosphorus (P) discharge and concentration mechanisms were explored using a load apportionment model (LAM) developed for use in a freshwater catchment in Ireland with fourteen years of data (1995-2008). The aim of model conceptualisation was to infer changes in point and diffuse sources from catchment P loading during P mitigation, based upon a dataset comprising geospatial and water quality data from a 256km(2) lake catchment in an intensively farmed drumlin region of the midlands of Ireland. The model was calibrated using river total P (TP), molybdate reactive P (MRP) and runoff data from seven subcatchments. Temporal and spatial heterogeneity of P sources existed within and between subcatchments; these were attributed to differences in agricultural intensity, soil type and anthropogenically-sourced effluent P loading. Catchment rivers were sensitive to flow regime, which can result in eutrophication of rivers during summer and lake enrichment from frequent flood events. For one sewage impacted river, the LAM estimated that point sourced P contributed up to of 90% of annual MRP load delivered during a hydrological year and in this river point P sources dominated flows up to 92% of days. In the other rivers, despite diffuse P forming a majority of the annual P exports, point sources of P dominated flows for up to 64% of a hydrological year. The calibrated model demonstrated that lower P export rates followed specific P mitigation measures. The LAM estimated up to 80% decreases in point MRP load after enhanced P removal at waste water treatments plants in urban subcatchments and the implementation of septic tank and agricultural bye-laws in rural subcatchments. The LAM approach provides a way to assess the long-term effectiveness of further measures to reduce P loadings in EU (International) River Basin Districts and subcatchments.

Impact of urbanization and agriculture on the occurrence of bacterial pathogens and stx genes in coastal waterbodies of central California

Fecal pollution enters coastal waters through multiple routes, many of which originate from land-based activities. Runoff from pervious and impervious land surfaces transports pollutants from land to sea and can cause impairment of coastal ocean waters. To understand how land use practices and water characteristics influence concentrations of fecal indicator bacteria (FIB) and pathogens in natural waters, fourteen coastal streams, rivers, and tidal lagoons, surrounded by variable land use and animal densities, were sampled every six weeks over two years (2008 & 2009). Fecal indicator bacteria (FIB; Escherichia coli and Enterococci) and Salmonella concentrations, the occurrence of Bacteroidales human, ruminant, and pig-specific fecal markers, E. coli O157:H7, and Shiga toxin (stx) genes present in E. coli, were measured. In addition, environmental and climatic variables (e.g., temperature, salinity, rainfall), as well as human and livestock population densities and land cover were quantified. Concentrations of FIB and Salmonella were correlated with each other, but the occurrence of host-specific Bacteroidales markers did not correlate with FIB or pathogens. FIB and Salmonella concentrations, as well as the occurrence of E. coli harboring stx genes, were positively associated with the fraction of the surrounding subwatershed that was urban, while the occurrence of E. coli O157:H7 was positively associated with the agricultural fraction. FIB and Salmonella concentrations were negatively correlated to salinity and temperature, and positively correlated to rainfall. Areal loading rates of FIB, Salmonella and E. coli O157:H7 to the coastal ocean were calculated for stream and river sites and varied with land cover, salinity, temperature, and rainfall. Results suggest that FIB and pathogen concentrations are influenced, in part, by their flux from the land, which is exacerbated during rainfall; once waterborne, bacterial persistence is affected by water temperature and salinity.

Effect of dissolved organic carbon on sorption of pyrethroids to sediments

Despite their strong hydrophobicity, recent studies showed widespread occurrence of pyrethroid in downstream surface waters bodies. In this work, the effect of dissolved organic carbon (DOC) on the sorption and desorption of pyrethroids in sediment was evaluated to understand the role of DOC in facilitating pyrethroid transport. Presence of DOC from three sources at 38 ± 2 mg L⁻¹ in the aqueous phase decreased pesticide sorption to a sediment by 1.7 to 38.9 times and increased their desorption by 1.2 to 41.4 times. The effect on pyrethroid sorption to the sediment was linear. In addition, interactions between DOC and pyrethroids, when taking place prior to the contact with sediment, decreased sorption of some pyrethroids even further, implying that DOC-pyrethroid complexs were relatively stable in solution. DOC sources with higher contents of carboxylic and phenolic groups were found to have a higher potential to associate with pyrethroids. The DOC-water partition coefficients (K(DOC)) obtained by solid-phase microextraction measurement were significantly correlated (P < 0.01) with K(d) values measured for the sediment. These results provide evidence that DOC increases the distribution of pyrethroids from the sediment to the solution phase and plays an important role in mobilizing pyrethroids in runoff and surface streams.

Characterization of phosphorus sources in rural watersheds

Correct identification of P sources in rural watersheds is critical for the development of cost-effective measures to combat agriculturally-driven eutrophication. The chemical composition of various storm runoff types (field surface runoff, field drain outfalls, roads, farmyards, and septic tanks) and the receiving streams in three micro (<10 km(2)) watersheds of varying agricultural intensity were monitored over a 2-yr period. Mean weekly stream soluble reactive phosphorus (SRP) and total phosphorus (TP) concentrations increased from 29 and 69 microg L(-1), respectively in the watershed with the lowest intensity agriculture to 382 and 503 microg L(-1), respectively in the watershed with high intensity agriculture and a village sewage treatment works. Concentrations of TP in storm runoff varied by up to two orders of magnitude reflecting the complex origins, routing, and composition of contributing source areas. Application of the DESPRAL test suggested field runoff TP concentrations were influenced by both P and organic matter in soil. However, runoff from impervious surfaces (farmyard and roads), and/or influenced by septic tank discharges, was significantly more concentrated (0.08-16 mg TP L(-1), mean >>1 mg L(-1)) than surface and subsurface runoff from cultivated land and pasture (0.02-3.6 mg TP L(-1), mean <1 mg L(-1)), and/or contained a significantly greater proportion (>50% vs. <50%) of P in dissolved forms. It is concluded that P sources associated with the functioning of rural communities (impervious surfaces, detergents, and wastewater) may be more ecologically relevant than those associated with agriculture and should be better quantified and controlled to avoid localized eutrophication impacts.

Delivery and cycling of phosphorus in rivers: a review

Phosphorus (P) supply (concentration and flux) is an important driver for biological activity in flowing waters and needs to be managed to avoid eutrophication impacts associated with urbanisation and agricultural intensification. This paper examines the role of in-stream retention and cycling in regulating river P concentrations in order to better understand the links between P sources and their ecological impacts. In terms of their composition (solubility and concentration), patterns of delivery (mode and timing) and therefore ecological relevance, P sources entering rivers are best grouped into wastewater discharges > runoff from impervious surfaces (roads, farmyards) > runoff from pervious surfaces (forestry, cultivated land and pasture). The localized impacts of soluble P discharges during ecologically sensitive periods can be distinguished from the downstream impacts associated with particulate P discharges under high flows due to the different processes by which these sources are retained, transformed and assimilated within the river channel. The range of physico-chemical processes involved in P cycling and the variable importance of these processes in different river environments according to stream size, stream geomorphology and anthropogenic pressures are summarised. It is concluded that the capacity to retain (process) P within the river channel, and hence regulate the downstream delivery of P without stressing the aquatic communities present, is considerable, especially in headwaters. To help achieve good water quality, there is scope to better manage this ecosystem service through regulation of P supply whilst optimising in-stream P retention according to subsidy-stress theory. Further research is needed to develop in-stream management options for maximising P subsidies and to demonstrate that regulation of downstream P delivery will reduce the incidence of eutrophication in connected waterbodies.

Farmyard point discharges and their influence on nutrient and labile carbon dynamics in a second order stream draining through a dairy unit

Two small piped sources deriving from a single farmyard together with the receiving second order stream above and below the farmyard region were sampled over a two-year period. Although not measured directly, observations at the time of sampling suggested that maximum drain flow was about 2% of downstream base flow. Both point sources were flowing on each sampling occasion (~62) and usually had concentrations of phosphorus (P), nitrate (NO(3)-N) and biological oxygen demand (BOD) well above those from the upstream site. Individual sample concentrations ranged over more than two orders of magnitude for most determinants and a large proportion of the total P was present as soluble (inorganic and organic) and therefore labile forms. More than 70% of samples collected at the downstream site had concentrations that were >1.2 times those of the corresponding upstream site. On certain sampling occasions >80% of total dissolved phosphorus (TDP) and >90% of the BOD and NO(3) instantaneous load appeared to originate from the farmyard region with the composition of downstream samples being completely overwhelmed after the passage through the farmyard. Extrapolations using instantaneous loads suggest that the farmyard and adjacent areas contributed on average 25-30% of the total and dissolved annual downstream P load of 3 kg P ha(-1) and 1.7 kg P ha(-1), respectively. There was no clear relationship between the relative proportion of the contaminant loading originating from the farmyard region and hydrological events. This emphasises the potential localised significance that small, highly concentrated, continuous or semi-continuous farmyard sources can impact headwater streams during periods of low stream flow.