Extracellular polymeric substances of bacteria and their potential environmental applications

Characterization and application of polysaccharides produced by Pseudomonas atacamensis M7D1 for chromium (III) removal from tannery effluent

The wastewater from various industries contaminated with heavy metals poses significant environmental challenges. Biosorption has emerged as a widely used method for removing heavy metals from industrial wastewater. Pseudomonas atacamensis M7D1 is known to produce polysaccharides, but the potential of its polysaccharides as an adsorbent for heavy metal removal still needs to be explored. This study investigated the ability of the extracellular polymeric substances (EPS), primarily composed of polysaccharides, from P. atacamensis M7D1 to adsorb Cr(III) from tannery effluent. The research involved EPS production, physicochemical characterization, and Cr(III) adsorption assessment. The maximum EPS production was 780 mg/l, which increased by 3.4 times (2670 mg/l) with the addition of NaCl. The produced EPS exhibited excellent temperature tolerance and high molecular weight (3.6 × 105 g/mol). The optimal conditions to achieve maximum Cr(III) adsorption were an EPS concentration of 1.5 g/l, pH 4, and a temperature of 75 °C. These findings suggest that the EPS of P. atacamensis M7D1 has significant potential as an effective adsorbent for removing Cr(III) from contaminated wastewater.

Extracellular electron transfer-dependent bioremediation of uranium-contaminated groundwater: Advancements and challenges

Efficient and sustainable remediation of uranium-contaminated groundwater is critical for groundwater safety and the sustainable development of nuclear energy, particularly in the context of global carbon neutrality goals. This review explores the potential of microbial reduction processes that utilize extracellular electron transfer (EET) to convert soluble uranium (U(VI)) into its insoluble form (U(IV)), presenting a promising approach to groundwater remediation. The review first outlines the key processes and factors influencing the effectiveness of dissimilatory metal-reducing bacteria (DMRB), such as Geobacter and Shewanella, during uranium bioremediation and recovery. The cutting-edge progress on the molecular mechanism of EET-driven U(VI) reduction mediated by c-type cytochromes, conductive pili, and electron mediators, is critically reviewed. Additionally, advanced strategies such as optimizing electron transfer, leveraging synthetic biology approach, and integration with machine learning are discussed to enhance the efficiency of EET-driven processes. The review also considers the integration of EET processes into practical engineering applications, highlighting the need for optimization and innovation in bioremediation technologies. By providing a comprehensive overview of current progress and challenges, this review aims to inspire novel research and practical advancements in the field of uranium-contaminated groundwater remediation.

Extracellular polymeric substances (EPS) in sewage sludge management: A call for methodological standardization

Extracellular polymeric substances (EPS) are crucial in sewage sludge management, influencing key processes such as sedimentation, dewatering, and drying. Despite their importance, the lack of standardized methods for EPS extraction and analysis has led to inconsistent research findings, hindering a thorough understanding of EPS's role in sludge treatment. This review paper addresses this issue by critically comparing various EPS extraction and analysis methods, emphasizing the urgent need for standardization in the field. Standardized methodologies will enable researchers to compare studies more accurately and derive meaningful insights into EPS's role across different stages of sludge treatment, ultimately advancing EPS knowledge and application in sludge management. Additionally, this paper summarizes findings from numerous studies on EPS impact in sedimentation, dewatering, and drying, offering a holistic view of their significance in sludge management. Moreover, it explores the potential EPS applications, highlighting both the future directions and the challenges associated with their production.

Response of wastewater treatment performance and bacterial community to original and aged polyvinyl chloride microplastics in sequencing batch reactors

Microplastics (MPs) are prevalent in wastewater treatment systems, and their behavior is further complicated after undergoing aging processes. This study explored the impact of original and aged polyvinyl chloride (PVC) MPs on wastewater treatment performance and bacterial communities. Results revealed that Fenton-aging treatment induced surface roughening of the MPs and altered their chemical properties. Prolonged exposure to original and aged PVC MPs severely inhibited the removal of chemical oxygen demand and NH4+-N, along with lower sludge concentrations. Additionally, PVC MPs increased the production of loosely-bound extracellular polymeric substances (EPS) and decreased protein levels in tightly-bound fractions. The presence of PVC MPs also shifted the bacterial community, reducing nitrogen removal bacteria while enriching EPS-forming bacteria. Furthermore, exposure to PVC MPs led to a decrease in the abundance of key genes involved in nitrogen metabolism. These findings offer insights into the effects of MPs, especially aged variants, on wastewater treatment processes.

Amphora coffeiformis extracellular polymeric substances and their potential applications in lead removal

Microorganisms producing extracellular polymeric substances (EPS) are of great potential in numerous environmental applications. The present study explores the production and properties of extracellular polymeric substances (EPS) from Amphora coffeiformis diatom strain and their potential applications in environmental remediation. EPS were composed of a complex mixture of polysaccharides, proteins, humic substances and nucleic acids, with polyanionic characteristics as revealed by FTIR, Raman and zeta potential analyses. EPS showed high flocculation efficiency against kaolin clay at low dosages (5 mg/L) through a charge neutralization mechanism involving both polysaccharides and proteins. EPS also exhibited strong emulsification activity for various nonpolar substrates, mainly olive oil, corn oil, soybean oil, essence and diesel, with emulsification indexes above 80%. The emulsions were stable for 72 h under different NaCl concentrations (1-10% w/v). Moreover, EPS demonstrated remarkable adsorption capacity for lead, reaching a maximum of 1699.33 ± 89.61 mg/g under optimized conditions using Box-Behnken design. The adsorption mechanism involved multiple functional groups such as hydroxyl, carbonyl, carboxyl, phosphoric and sulfhydryl. Therefore, EPS from A. coffeiformis are a promising candidate for restoring environments contaminated by heavy metals.

Microbe-assisted phytoremediation for sustainable management of heavy metal in wastewater - A green approach to escalate the remediation of heavy metals

Water pollution from Heavy metal (HM) contamination poses a critical threat to environmental sustainability and public health. Industrial activities have increased the presence of HMs in wastewater, necessitating effective remediation strategies. Conventional methods like chemical precipitation, ion exchange, adsorption, and membrane filtration are widely used but possess various limitations. These include high costs, environmental impacts, and the potential for generating secondary pollutants, highlighting the need for sustainable alternatives. Phytoremediation, enhanced by microbial interactions, offers an eco-friendly solution to this issue. The unique physiological and biochemical traits of plants, combined with microbial metabolic capabilities, enable efficient uptake and detoxification of HMs. Microbial enzymes play a crucial role in these processes by breaking down complex compounds, enhancing HM bioavailability, and facilitating their conversion into less toxic forms. Synergistic interactions between root-associated microbes and plants further improves metal absorption and stabilization, boosting phytoremediation efficiency. However, challenges remain, including the limited bioavailability of contaminants and plant resilience in highly polluted environments. Recent advancements focus on improving microbial-assisted phytoremediation through mechanisms like bioavailability facilitation, phytoextraction, and phytostabilization. Genetic engineering facilitates the altering of genes that control plant immune responses and growth which improves the ability of plants to interact beneficially with microbes to thrive in HM rich environments while efficiently cleaning contaminated wastewater. This review examines these strategies and highlights future research directions to enhance wastewater remediation using phytoremediation technologies.

Modeling the Performance of an Anaerobic Moving Bed Biofilm Reactor

Sub-models representing transformation processes by microorganisms and hydrolases, a one-dimensional (1-D) biofilm, and a bioreactor were integrated to simulate organic-matter fermentation and methane (CH4) production in an anaerobic moving bed biofilm reactor (AnMBBR). The integrated models correctly represented all experimental observations and identified mechanisms underlying how and why AnMBBR performance changed when the volumetric loading rate (VLR) of total chemical oxygen demand (TCOD) increased from 3.9 to 19.5 kg CODT/m3-d. The fractional removal of TCOD and CH4 production decreased as the VLR of TCOD increased, in part, due to an increasing biofilm thickness that filled the protected channels in the interior of the plastic carriers and led to a decrease in biofilm surface area and an increase in the mass-transfer boundary layer. Also, the ~25-day duration for each VLR of TCOD was too brief to allow the biofilm to establish a new quasi-steady state with respect to biofilm thickness. The mechanistic understanding of how biofilm characteristics and process performance respond to increased VLR of TCOD can be applied in engineering practice to improve AnMBBR process design and operation.

Calcium peroxide treatment of cyanobacterial blooms: Ecological safety assessment on submerged macrophyte Vallisneria natans

The outbreak of cyanobacterial blooms poses an increasingly serious ecological challenge. Our previous study found that calcium peroxide (CaO2) has a high inhibitory effect on cyanobacteria, along with a practical application potential in cyanobacteria-dominated lakes. In order to explore the sensitivity of aquatic ecosystems to CaO2 treatment, we conducted this study to elucidate the ecological impact of CaO2 on Vallisneria natans (V. natans) when inhibiting cyanobacterial bloom. This study firstly optimized the performance of CaO2 by preparing alginate-encapsulated CaO₂ (CaO2-Bead), which prolonged the release time of reactive oxygen species (ROS). Subsequently, the sensitivity of submerged plant V. natans and its biofilm was explored. After adding 100 mg L-1 CaO2-Bead, significant inhibitory effect on cyanobacteria was found, and the inhibition rate of cyanobacterial biomass reached 93.5 %. More importantly, CaO2-Bead can alleviate the oxidative stress, effects of Extracellular Polymeric Substances (EPS) structure and microbial community on the surface of leaf biofilm caused by cyanobacteria. At the same time, it decreased the damage of photosynthesis, mitochondrial transport, plant-pathogen interaction, mitogen-activated protein kinases (MAPK), and ubiquitin-mediated protein degradation in pathways in V. natans under inhibition of cyanobacteria. Our research provides a theoretical basis for evaluating the safety of CaO2 on the aquatic environment when treating cyanobacterial blooms.

Responses of microbial communities in coastal sediments exposed to triclocarban and triclosan

Triclocarban (TCC) and triclosan (TCS) are applied in a wide range of pharmaceutical and personal care products to prevent or reduce bacterial growth. Due to their extensive application, they are frequently detected in marine environments. In this study, marine sediment systems exposed to different concentrations of TCC and TCS were established to evaluate their effects on microbial communities. It was found that TCC and TCS increased catalase and protease activities on Day 1, but inhibited after 15 days. Microbial activity, as indicated by increased dehydrogenase activity and polysaccharide production, should be enhanced after a 15-day adaptation period. High-throughput sequencing revealed resilient α-diversity but significant shifts in community structures were observed, particularly on Day 15. Function prediction analysis confirmed that most functional profiles remained stable, and network analysis indicated that TCC and TCS enhanced the complexity of the microbial community. This study provides new insights into the impacts and risks of TCC and TCS on the marine environment.

Programming Surface Motility and Modulating Physiological Behaviors of Bacteria via Biosurfactant-Mimetic Polyurethanes

Modulating microbial motility and physiology can enhance the production of bacterial macromolecules and small molecules. Herein, a platform of water-soluble and amphiphilic peptidomimetic polyurethanes is reported as a means of regulating bacterial surface behavior and the concomitant production of extracellular polymeric substances (EPS). It is demonstrated that carboxyl (-COOH)-containing polyurethanes exhibited 17-fold and 80-fold enhancements in Pseudomonas aeruginosa (P. aeruginosa) swarming and twitching areas, respectively. Conversely, an amine (-NH2)-functionalized polyurethane reduces the P. aeruginosa swarming area by 58%. Similar influences on the surface motility of Escherichia coli (E. coli) and a nonswarming P. aeruginosa mutant strain are also observed. Notably, -COOH polyurethanes completely wet the agar hydrogel surface and promote bacterial surface proliferation, resulting in enhanced EPS and rhamnolipid production. The programming of bacterial spatial migration into designed patterns is achieved by leveraging the opposing influences of -NH2 and -COOH polyurethanes. The results highlight the potential of this synthetic polyurethane platform and potentially other polymer systems as an exciting approach to control bacterial surface behaviors and influence the production of engineered living materials.

Mechanisms and Impact of Rhizosphere Microbial Metabolites on Crop Health, Traits, Functional Components: A Comprehensive Review

Current agricultural practices face numerous challenges, including declining soil fertility and heavy reliance on chemical inputs. Rhizosphere microbial metabolites have emerged as promising agents for enhancing crop health and yield in a sustainable manner. These metabolites, including phytohormones, antibiotics, and volatile organic compounds, play critical roles in promoting plant growth, boosting resistance to pathogens, and improving resilience to environmental stresses. This review comprehensively outlines the mechanisms through which rhizosphere microbial metabolites influence crop health, traits, functional components, and yield. It also discusses the potential applications of microbial secondary metabolites in biofertilizers and highlights the challenges associated with their production and practical use. Measures to overcome these challenges are proposed, alongside an exploration of the future development of the functional fertilizer industry. The findings presented here provide a scientific basis for utilizing rhizosphere microbial metabolites to enhance agricultural sustainability, offering new strategies for future crop management. Integrating these microbial strategies could lead to increased crop productivity, improved quality, and reduced dependence on synthetic chemical inputs, thereby supporting a more environmentally friendly and resilient agricultural system.

Variations on a theme: non-canonical DUF3494 ice-binding proteins

Among the many ice-binding proteins (IBPs) found in microorganisms (bacteria, archaea, fungi and algae), the canonical DUF3494 beta-barrel type is the most common. Until now, little variation has been found in this structure: an initial coil leads into an alpha helix that directs the following coils into a reverse stack, with the final coil ending up next to the initial coil. Here, I show that there exist many bacterial proteins whose AlphaFold-predicted structures deviate from the DUF3494 structure so that they are not recognized as belonging to an existing DUF or Pfam family. In these non-canonical DUF3494 (ncDUF3494) proteins, the number of coils in the alpha helix is highly variable, often being as high as 14. The putative ice-binding sides of each of 13 proteins modeled have a well-aligned row of hydrophilic residues, with spacings that are close to the repeat distance on the ice a-axis. A recombinant protein made for one of the proteins showed that it had ice-binding activity, even in the µg/ml range. The ncDUF3494 proteins appear to be found only in bacteria, the great majority of which live in icy habitats. C-terminal PEP-Cterm motifs, which are rare in DUF3494s, are present in most of the ncDUF3494s, possibly indicating a secretory function. The relatively narrow distribution of ncDUF3494 proteins suggests that they are a later development in DUF3494 evolution.

Integrating rhizosphere bacterial structure and metabolites with soil Cd availability in different parent paddy soils

Soil bacterial community structure and rhizosphere metabolites are important pathways for rice to respond to external Cd stress. The specific correlations between these microorganisms, metabolites and inherent soil properties, as well as the mechanisms they utilize to regulate Cd availability across different parent soils remain underexplored, emphasizing the need for deeper understanding to inform effective soil management strategies. In this study, five typical parent soils with large differences in properties (quaternary red clay soil (hereby defined as Q), granite soil (G), river sandy mud (R), yellow mud soil (Y), stucco field (S)) in Chinese paddy soils were collected, and extra Cd were added (CK: 0 mg·kg-1, Cd: 2.4 mg·kg-1).The result indicated that the toxicity impact of Cd in rice grains in G was the weakest, and the highest Cd bioavailability in S. The abundance of Proteobacteria, Bacteroidota and Firmicutes showed an increasing trend in G, while they decreased significantly in S. The contents of Cis-9-palmitoleic acid and phosphoethanolamine increased by 170.02 % and 154.03 % in G, decreased by 218.62 % and 181.58 % in S. MBNT15 and Desulfobacterota showed a significant negative correlation with humic acid molecular weight (MW) extracted from parent soils and Clay (montmorillonite, illite, kaolinite) contents, while they exhibited a positive correlation with soil organic matter (OM) content (P < 0.01). The MW played a crucial role in shaping rhizosphere metabolites with R2 value of 0.8498. These results elucidate how soil bacterial communities, rhizosphere metabolites, and inherent soil properties interact to regulate Cd availability across different parent soils.

Spatially variable organic-matter-driven clogging in a stormwater infiltration pond: Isotopic, microbiological and hydrogeological evidence

Stormwater infiltration ponds (SIPs) are nature-based solutions which tend to decrease their infiltration capacity over time due to pore clogging. Organic matter (OM) is a well-known clogging driver, but how OM affects the physical and biochemical processes in a SIP remains largely unknown. An analysis encompassing soil organic carbon (SOC) stable isotopes, extracellular polymeric substances (EPS) of biofilms, DNA-based identification of microbiological communities and hydrogeological tests was carried out to elucidate the main clogging mechanisms in a large SIP in Italy. Open pits revealed a stratified soil composed of different textures and compositions, associated with artificial recharge sequences and on-site maintenance practices. A very different isotopic and microbiological signature of soil samples collected at different depths within the first meter of the soil surface was observed. Such diversity was linked to the spatially variable permeability of OM-enriched sediments limiting the infiltration. The isotopic signature beneath the more permeable (i.e., less clogged) OM-enriched layers was similar to that of the isotopic value of the biological surficial crust (δ13C → -27 ‰). Below the less permeable (i.e., more clogged) OM-enriched layers, isotopic values were more consistent with advanced degradation of organic matter (δ13C → -23 ‰). The selective hydraulic isolation of the analyzed trenches could lead to the formation of microbial microenvironments, with direct consequences on local composition of EPS and biofilm production. Based on this multidisciplinary approach, a new conceptual model could be proposed to the site managers and authorities dealing with the SIP's maintenance.

Co-metabolism of microorganisms: A study revealing the mechanism of antibiotic removal, progress of biodegradation transformation pathways

The widespread use of antibiotics has resulted in large quantities of antibiotic residues entering aquatic environments, which can lead to the development of antibiotic-resistant bacteria and antibiotic-resistant genes, posing a potential environmental risk and jeopardizing human health. Constructing a microbial co-metabolism system has become an effective measure to improve the removal efficiency of antibiotics by microorganisms. This paper reviews the four main mechanisms involved in microbial removal of antibiotics: bioaccumulation, biosorption, biodegradation and co-metabolism. The promotion of extracellular polymeric substances for biosorption and extracellular degradation and the regulation mechanism of enzymes in biodegradation by microorganisms processes are detailed therein. Transformation pathways for microbial removal of antibiotics are discussed. Bacteria, microalgae, and microbial consortia's roles in antibiotic removal are outlined. The factors influencing the removal of antibiotics by microbial co-metabolism are also discussed. Overall, this review summarizes the current understanding of microbial co-metabolism for antibiotic removal and outlines future research directions.

Aerobic denitrifying bacterial community with low C/N ratio remove nitrate from micro-polluted water: Metagenomics unravels denitrification pathways

The efficient nitrogen removal from micro-polluted source water is an international challenge to be solved urgently. However, the inner denitrification mechanism of native aerobic denitrifying bacterial communities in response to carbon scarcity remains relatively unclear. Here, the bacterial community XT6, screened from an oligotrophic reservoir, exhibited aerobic denitrifying capacity under low-carbon environments. Up to 76.79-81.64 % of total organic carbon (TOC) and 51.48-67.60 % of NO3--N were removed by XT6 within 48 h at C/N ratios of 2.0-3.0. Additionally, the nitrogen balance experiments further manifested that 26.27-38.13 % of NO3--N was lost in gaseous form. As the C/N ratio decreased, XT6 tended to generate more extracellular polymeric substances (EPS), with the tightly bound EPS showing the largest increase. Pseudomonas and Variovorax were quite abundant in XT6, constituting 59.69 % and 28.65 % of the total sequences, respectively. Furthermore, metagenomics analysis evidenced that XT6 removed TOC and nitrate mainly through the tricarboxylic acid cycle and aerobic denitrification. Overall, the abovementioned results provide a deeper understanding of the nitrogen metabolic pathways of indigenous aerobic denitrifying bacterial communities with low C/N ratios and offer useful guidance for controlling nitrogen pollution in oligotrophic ecosystems.

Impact of elevated CO2 on soil microbiota: A meta-analytical review of carbon and nitrogen metabolism

In the face of 21st-century challenges driven by population growth and resource depletion, understanding the intricacies of climate change is crucial for environmental sustainability. This review systematically explores the interaction between rising atmospheric CO2 concentrations and soil microbial populations, with possible feedback effects on climate change and terrestrial carbon (C) cycling through a meta-analytical approach. Furthermore, it investigates the enzymatic activities related to carbon acquisition, gene expression patterns governing carbon and nitrogen metabolism, and metagenomic and meta-transcriptomic dynamics in response to elevated CO2 levels. The study reveals that elevated CO2 levels substantially influence soil microbial communities, increasing microbial biomass C and respiration rate by 15 % and upregulating genes involved in carbon and nitrogen metabolism by 12 %. Despite a 14 % increase in C-acquiring enzyme activity, there is a 5 % decrease in N-acquiring enzyme activity, indicating complex microbial responses to CO2 changes. Additionally, fungal marker ratios increase by 14 % compared to bacterial markers, indicating potential ecosystem changes. However, the current inadequacy of data on metagenomic and meta-transcriptomic processes underscores the need for further research. Understanding soil microbial feedback mechanisms is crucial for elucidating the role of rising CO2 levels in carbon sequestration and climate regulation. Consequently, future research should prioritize a comprehensive elucidation of soil microbial carbon cycling, greenhouse gas emission dynamics, and their underlying drivers.

The nexus between aeration intensity and organic carbon capture in contact-stabilization process: Insights from molecular structure transition of dissolved organic matters

Traditional energy-intensive pollution control pattern poses great challenges to the sustainable development of urban cities, necessitating the implementation of more compact and cost-effective biological treatment technology. High-rate contact stabilization (HiCS) process can effectively capture low-concentration organic carbon matters from municipal wastewater. However, the role of dissolved oxygen (DO) concentration at stabilization phase-a critical determinant of carbon capture efficiency-remains poorly understood, thus hindering its operation optimization and application. This work investigated the impact of DO content at the stabilization phase on the effluent quality and carbon capture efficiency of HiCS process from the perspectives of sludge dissolved organic matter (DOM) composition and microbial metabolism activity changes. The results showed that optimal carbon capture efficiency (52.1 %) and the lowest effluent chemical oxygen demand concentration were achieved at a DO concentration of 1 mg/L. Elevated DO levels would increase the aromaticity of DOM in sludge, rendering it more recalcitrant to microbial degradation. In addition, higher DO concentration induced a metabolic shift towards endogenous respiration among the microbial community, leading to the increased release of DOM and microbial metabolites, which in turn deteriorated the effluent quality. The findings of this work highlight the necessity of controlling appropriate aeration intensity when applying HiCS in practical application, to both effectively minimize organic carbon mineralization and operational energy consumption while without sacrificing pollutant removal performance.

Bacterial extracellular biopolymers: Eco-diversification, biosynthesis, technological development and commercial applications

Synthetic polymers have been widely thriving as mega industries at a commercial scale in various commercial sectors over the last few decades. The extensive use of synthetic polymers has caused several negative repercussions on the health of humans and the environment. Recently, biopolymers have gained more attention among scientists of different disciplines by their potential therapeutic and commercial applications. Biopolymers are chain-like repeating units of molecules isolated from green sources. They are self-degradable, biocompatible, and non-toxic in nature. Recently, eco-friendly biopolymers such as extracellular polymeric substances (EPSs) have received much attention for their wide applications in the fields of emulsification, flocculation, preservatives, wastewater treatment, nanomaterial functionalization, drug delivery, cosmetics, glycomics, medicinal chemistry, and purification technology. The dynamicity of applications has raised the industrial and consumer demands to cater to the needs of mankind. This review deals with current insights and highlights on database surveys, potential sources, classification, extremophilic EPSs, bioprospecting, patents, microenvironment stability, biosynthesis, and genetic advances for production of high valued ecofriendly polymers. The importance of high valued EPSs in commercial and industrial applications in the global market economy is also summarized. This review concludes with future perspectives and commercial applications for the well-being of humanity.

Indicative impacts of sludge properties and biological metabolic characteristics on high-rate contact stabilization process performance

Regarding curtailing carbon emissions in wastewater treatment, the high-rate contact stabilization (HiCS) process outperforms others in removing dissolved organic matter (DOM) but struggles with poor settling performance. To boost operation performance and clarify the correlation between process parameters, DOM variations, effluent quality, and microbial metabolism within the HiCS system, the impacts of sludge properties on sludge settlement and organic matter (OM) capture efficiency were explored, and soluble fluorescent components in the DOM and extracellular polymeric substances (EPS) were identified and scrutinized. Results unveil that the feast/famine (F/F) regime in the HiCS process predominantly governs sludge activation in the stabilization phase, influencing sludge properties such as morphology characteristics, biological activity, and EPS secretion. At the same hydraulic retention time, reducing the sludge retention time (SRT) led to looser and smaller activated sludge flocs, increased microbial activity, and higher EPS production, particularly protein content in loosely bound EPS (LB-PN), which adversely impacted settling performance. High-throughput sequencing revealed that richness and diversity of the microbial community decreased with SRT. Acidobacteriota and Patescibacteria, associated with nitrifying and denitrifying bacteria, significantly decreased. EPS-producing Firmicutes increased, enhancing EPS secretion, while filamentous Chloroflexi decreased, aligning with a reduced organic mineralization rate. Settlement and biological activity emerged as key factors affecting OM recovery, peaking at 43.97% with a 4-day SRT. The ratio of the sum of tryptophan-like and tyrosine-like components to fulvic-like components ((C1+C2)/C3) was proposed as a fluorescence indicator, serving as a hub to connect operational parameters, F/F regime, sludge status and process performance. When this ratio falls within the range of 1.04-1.36 during the stabilization phase, HiCS sludge achieves optimal status for OM capture with low aeration energy consumption.

Little alginates synthesized in EPS: Evidences from high-throughput community and metagenes

As a significant structure in activated sludge, extracellular polymeric substances (EPS) hold considerable value regarding resource recovery and applications. The present study aimed to elucidate the relationship between the microbial community and the composition and properties of EPS. A biological nutrient removal (BNR) reactor was set up in the laboratory and controlled under different solid retention times (SRT), altering microbial species within the system. Then EPS was extracted from activated and analyzed by chemical and spectroscopic methods. High-throughput sequencing and metagenomic approaches were employed to investigate bacterial community and metabolic pathways. The results showed that lower SRT with a higher abundance of the family-level Proteobacteria (27.7%-53.5%) favored EPS synthesis, while another dominant group Bacteroidetes (20.0%-32.6%) may not significantly affect EPS synthesis. Furthermore, the abundance of alginates-producing bacteria including Pseudomonas spp. and Azotobacter vinelandii was only 2.53%-6.76% and 1.98%-6.34%, respectively. The alginate synthesis pathway genes Alg8 and Alg44 were also present at very low levels (0.05‱-0.11‱, 0.01‱-0.02‱, respectively). Another important gene related to alginates operons, AlgK, was absent across all the SRT-operated reactors. These findings suggest an impossible and incomplete alginate synthesis pathway within sludge. In light of these results, it can be concluded that EPS does not necessarily contain alginate components.

Types, synthesis pathways, purification, characterization, and agroecological physiological functions of microbial exopolysaccharides: A review

Exopolysaccharides (EPS), originating from various microbes, are essential bioproducts with widespread applications including packaging, biomedicine, wastewater treatment, cosmetics, agriculture, and food industries. Particularly, in the field of sustainable agriculture, microbial EPS have positive effects on plant growth and have gained considerable interest among agriculturists. However, few studies have elucidated the mechanisms of action of EPS in soil-microbe-plant interactions in agroecosystems. This review focuses on the sources and types of EPS, biosynthetic processes, factors affecting EPS yield, extraction and purification methods employed to produce microbial EPS, and structural characterization methods for EPS. Moreover, the agroecological physiological functions of microbial EPS with respect to promoting soil health (e.g., improving soil structure and fertility and repairing contaminated soil) and plant growth (e.g., plant growth and physiological metabolism under normal and stress conditions, such as salt, drought, heavy metals, and extreme temperatures) are critically highlighted. Furthermore, existing challenges and prospects for agricultural applications are discussed. This review demonstrates that the application of microbial EPS in agriculture provides a new type of green material for agricultural producers to improve soil quality, increase agricultural productivity, and provide new ideas for sustainable agricultural development.

Synthesis and Characterization of Iron Nanoparticles from a Bioflocculant Produced by Pichia kudriavzevii Isolated from Kombucha Tea SCOBY

The intriguing characteristics of nanoparticles have fueled recent advancement in the field of nanotechnology. In the current study, a microbial-based bioflocculant made from the SCOBY of Kombucha tea broth was purified, profiled, and utilized to biosynthesize iron nanoparticles as a capping and reducing agent. UV-visible absorption spectroscopy, transform infrared spectroscopy (FT-IR), X-ray diffraction (XRD), transmission electron microscopy (TEM), scanning electron microscopy (SEM), energy-dispersive X-ray analysis (EDX), and TGA were used to characterize the Fe nanoparticles. The FT-IR spectra showed functional groups such as hydroxyl, a halogen (C-Br), and carbonyl, and the alkane (C-H) functional groups were present in both samples (bioflocculant and FeNPs) with the exception of the Fe-O bond, which represented the successful biosynthesis of FeNPs. The TEM investigation revealed that the sizes of the produced iron nanoparticles were between 2.6 and 6.2 nm. The UV-vis spectra revealed peaks at 230 nm for the bioflocculant and for the as-fabricated FeNPs, peaks were around 210, 265, and 330 nm, which confirms the formation of FeNPs. X-ray diffraction presented planes (012), (104), (110), (113), (024), (116), and (533) and these planes correspond to 17.17, 32.58, 33.75, 38.18, 45.31, 57.40, and 72.4° at 2Ө. The presence of Fe nanoparticles presented with 0.82 wt% from the EDX spectrum of the biosynthesized FeNPs. However, Fe content was not present from the bioflocculant. SEM images reported cumulus-like particles of the bioflocculant, while that of FeNPs were agglomerated and hexagonal with sizes between 18 and 50 nm. The TGA of FeNPs showed thermal stability by retaining above 60% of its weight at high temperatures. It can therefore be deduced that the purified bioflocculant produced by a yeast Pichia kudraivzevii can be utilized to synthesize FeNPs with the current simple and effective method.

Food Webs and Feedbacks: The Untold Ecological Relevance of Antimicrobial Resistance as Seen in Harmful Algal Blooms

Antimicrobial resistance (AMR) has long been framed as an epidemiological and public health concern. Its impacts on the environment are unclear. Yet, the basis for AMR is altered cell physiology. Just as this affects how microbes interact with antimicrobials, it can also affect how they interact with their own species, other species, and their non-living environment. Moreover, if the microbes are globally notorious for causing landscape-level environmental issues, then these effects could alter biodiversity and ecosystem function on a grand scale. To investigate these possibilities, we compiled peer-reviewed literature from the past 20 years regarding AMR in toxic freshwater cyanobacterial harmful algal blooms (HABs). We examined it for evidence of AMR affecting HAB frequency, severity, or persistence. Although no study within our scope was explicitly designed to address the question, multiple studies reported AMR-associated changes in HAB-forming cyanobacteria (and co-occurring microbes) that pertained directly to HAB timing, toxicity, and phase, as well as to the dynamics of HAB-afflicted aquatic food webs. These findings highlight the potential for AMR to have far-reaching environmental impacts (including the loss of biodiversity and ecosystem function) and bring into focus the importance of confronting complex interrelated issues such as AMR and HABs in concert, with interdisciplinary tools and perspectives.

Toxic effects of trace metal(loid) mixtures on aquatic organisms

The co-occurrence of metal (loid)s in realistic aquatic environments necessitates the evaluation of their combined effects. However, the generality of the additive effect hypothesis is contentious, particularly due to metal(loid)-metal(loid) interactions. The absence of systematic evaluation approaches restricts our ability to draw overall conclusions and make reliable predictions. In this study, we reviewed 1473 effect sizes from 38 publications, and classified all responses into seven main categories (from molecular to individual levels) according to their toxicological significance. Our meta-analysis revealed that metal(loid) mixtures had significant effects on aquatic organisms (33 %, 95 % CI 28 %-39 %, P < 0.05), along with significant response heterogeneity (Qt = 690,319.62, P < 0.0001; I2 = 99.95 %). Concurrently, we developed a Random Forest machine learning model to predict adverse effects and identify key variables. These two methods demonstrated that the toxicity of metal(loid) mixtures is primarily linked to the choice of toxicity endpoints, and the characteristics of metal(loid) mixtures. Our findings underscore the potential of combining meta-analysis with machine learning, a more systematic approach, to enhance the understanding and prediction of the adverse effects of metal(loid) mixtures, and they offer guidance for risk assessment and policy-making in complex environmental scenarios.

Sustainable polymeric adsorbents for adsorption-based water remediation and pathogen deactivation: a review

Water is a fundamental resource, yet various contaminants increasingly threaten its quality, necessitating effective remediation strategies. Sustainable polymeric adsorbents have emerged as promising materials in adsorption-based water remediation technologies, particularly for the removal of contaminants and deactivation of water-borne pathogens. Pathogenetic water contamination, which involves the presence of harmful bacteria, viruses, and other microorganisms, poses a significant threat to public health. This review aims to analyze the unique properties of various polymeric materials, including porous aromatic frameworks, biopolymers, and molecularly imprinted polymers, and their effectiveness in water remediation applications. Key findings reveal that these adsorbents demonstrate high surface areas, tunable surface chemistries, and mechanical stability, which enhance their performance in removing contaminants such as heavy metals, organic pollutants, and emerging contaminants from water sources. Furthermore, the review identifies gaps in current research and suggests future directions, including developing multifunctional polymeric materials and integrating adsorption techniques with advanced remediation technologies. This comprehensive analysis aims to contribute to advancing next-generation water purification technologies, ensuring access to clean and safe water for future generations.

Influence of natural organic matter on the aggregation dynamics of biochar colloids derived from various feedstocks

Abundant biochar colloids (BCs) produced from a wide range of feedstocks, resulting from forest fires, agricultural production, and environmental restoration, exhibit varying aggregation behaviors influenced by feedstock type and natural organic matter. However, the impact of natural organic matter on the colloidal stability of BCs derived from different feedstocks remains poorly understood. In this study, six selected biochars were derived from various feedstocks as follows: sewage sludge (SS), rice husk (RH), oil seed rape straw pellets (OSR), wheat straw pellets (WS), miscanthus straw pellets (MS) and softwood pellets (SW). The colloidal stability of BCs, with the exogenous addition of organic matter, was further determined. The order of critical coagulation concentrations (CCCs) of BCs with the presence of humic acid (HA) was as follows: RH (989.48 mM) < MS (1084.69 mM) < SS (1149.76 mM) < WS (1338.99 mM) < OSR (2402.98 mM) < SW (3151.32 mM). This order was significantly positively correlated with the specific surface area and negatively correlated with the ash content of the bulk biochar. Compared to HA, bovine serum albumin (BSA) more effectively inhibited the aggregation behavior of BCs due to steric hindrance. The initial aggregation rate constant (k) of BCs at 3000 mM NaCl was as follows: MS (0.238 nm/s) > OSR (0.142 nm/s) > WS (0.128 nm/s) > SS (0.126 nm/s) > RH (0.118 nm/s) > SW (0.112 nm/s). The stabilizing effects of BSA on biochar colloids were independent of the physicochemical properties of bulk biochar. In the presence of BSA, a thin layer of protein corona significantly enhanced the stability of biochar colloids, particularly the BCs derived from MS. Our results underscore the importance of considering feedstock resources and natural organic matter type when assessing the aggregation and potential risks of BCs in aquatic systems.

Bacterial surface properties and transport behavior actively respond to an extracellular polymeric substance gradient in saturated porous media

The transport and retention of bacteria in porous media, such as aquifer, are governed by the solid-liquid interface characteristics and bacterial mobility. The secretion of extracellular polymeric substance (EPS) by bacteria modifies their surface property, and thereby has effects on their adhesion to surface. The role of EPS in bacterial mobility within saturated quartz sand media is uncertain, as both promoting and inhibitory effects have been reported, and underlying mechanisms remain unclear. In this study, the effects of EPS on bacterial transport behavior and possible underlying mechanism were investigated at 4 concentrations (0 mg L-1, 50 mg L-1, 200 mg L-1 and 1000 mg L-1) using laboratory simulation experiments in conjunction with Extend Derjaguin-Landau-Verweu-Overbeek (XDLVO) modeling. The results showed that EPS facilitated bacterial mobility at all tested concentrations. It could be partially explained by the increased energy barrier between bacterial cells and quartz sand surface in the presence of EPS. The XDLVO sphere-plate model predicted that EPS induced a higher electrostatic double layer (EDL) repulsive force, Lewis acid-base (AB) and steric stabilization (ST), as well as a lower Lifshitz-van der Waals (LW) attractive force. However, at the highest EPS concentration (1000 mg L-1), the promotion of EPS on bacterial mobility weakened as a result of lower repulsive interactions between cells, which was supported by observed enhanced bacterial aggregation. Consequently, the increased aggregation led to greater bio-colloidal straining and ripening in the sand column, weakening the positive impact of EPS on bacterial transport. These findings suggested that EPS exhibited concentration-dependent effects on bacterial surface properties and transport behavior and revealed non-intuitive dual effects of EPS on those processes.

Integrated remediation and detoxification of triclocarban-contaminated water using waste-derived biochar-immobilized cells by long-term column experiments

Triclocarban (TCC), an antibacterial agent commonly used in personal care products, is one of the top ten contaminants of emerging concern in various environmental media, including soil and contaminated water in vadose zone. This study aimed to investigate TCC-contaminated water remediation using biochar-immobilized bacterial cells. Pseudomonas fluorescens strain MC46 (MC46), an efficient TCC-degrading isolate, was chosen, whereas agro-industrial carbonized waste as biochar was directly used as a sustainable cell immobilization carrier. According to the long-term TCC removal performance results (160 d), the biochar-immobilized cells consistently exhibited high TCC removal efficiencies (84-97%), whereas the free MC46 removed TCC for 76-94%. At 100 days, the detachment of the MC46 cells from the immobilized cell column was observed. The micro-Fourier-transform infrared spectroscopy results indicated that extracellular polymeric substance (EPS) was produced, but polysaccharide and protein fractions were washed out of the column. The lipid fraction of EPS adhered to the biochar, promoting TCC sorption for long-term treatment. The shortening of MC46 cells improved the tolerance of TCC toxicity. The TCC-contaminated water was successfully detoxified by the biochar-immobilized MC46 cells. Overall, the waste-derived biochar-immobilized cell system proposed in this study for the removal of emerging contaminants, including TCC, is efficient, economical, and aligned with the sustainable development concept of value-added utilization of waste.

Mechanistic insight into microbial interaction and metabolic pattern of anammox consortia on surface-modified biofilm carrier with extracellular polymeric substances

The extremely slow growth rate of anaerobic ammonia oxidation (anammox) bacteria limits full-scale application of anammox process worldwide. In this study, extracellular polymeric substances (EPS)-coated polypropylene (PP) carriers were prepared for biofilm formation. The biomass adhesion rate of EPS-PP carrier was 12 times that of PP carrier, and EPS-PP achieved significant enrichment of E. coli BY63. The 120-day continuous flow experiment showed that the EPS-PP carrier accelerated the formation of anammox biofilm, and the nitrogen removal efficiency increased by 10.5 %. In addition, the abundance of Candidatus Kuenenia in EPS-PP biofilm was 27.1%. Simultaneously, amino acids with high synthesis cost and the metabolites of glycerophospholipids related to biofilm formation on EPS-PP biofilm were significantly up-regulated. Therefore, EPS-PP carriers facilitated the rapid formation of anammox biofilm and promoted the metabolic activity of functional bacteria, which further contributed to the environmental and economic sustainability of anammox process.

Characterization of EPS subfractions from a mixed culture predominated by partial-denitrification functional bacteria

Extracellular polymeric substances (EPS) play a crucial role in the aggregation of partial denitrification (PD) consortia, as EPS is closely linked to bioreactor performance. However, the structural and compositional properties of EPS from PD consortia have not yet been investigated. In this study, photometric measurements indicated that PD consortia contained significantly more EPS (168.81 ± 2.10 mg/g VSS) compared to conventional activated sludge (79.79 mg/g VSS). The EPS of PD consortia exhibited a significant predominance of proteins over polysaccharides, with a protein/polysaccharide ratio of 1.43 ± 0.10. FTIR analysis revealed that the EPS of PD consortia contained fewer hydrophilic functional groups, particularly carboxyl and carbonyl groups, indicating a high aggregation potential. The content comparison of EPS and functional groups across three stratified EPS subfractions from PD consortia consistently followed the sequence: TB-EPS > LB-EPS > S-EPS. XPS results corroborated the FTIR findings and the protein/polysaccharide ratio determined by photometric measurements, all of which suggested that the EPS of PD consortia exhibited a higher abundance of hydrophobic functional groups. However, the higher α-helix/(β-sheet + random coil) ratio (0.99) suggested that the proteins in PD consortia had a compact structure, making inner hydrophobic groups difficult to expose. This compact protein structure could limit aggregation among bacterial cells, indicating the need for process optimization to enhance sludge aggregation in PD-related processes. Overall, understanding the aggregation characteristics of PD consortia could improve the application of PD-based processes.

Temperature-controlled microalgal biofilm detachment and harvesting assisted by ultrasonic from 3D porous substrates grafted with thermosensitive gels

Microalgae have been renowned as the most promising energy organism with significant potential in carbon fixation. In the large-scale cultivation of microalgae, the 3D porous substrate with higher specific surface area is favorable to microalgae adsorption and biofilm formation, whereas difficult for biofilm detachment and microalgae harvesting. To solve this contradiction, N-isopropylacrylamide, a temperature-responsive gels material, was grafted onto the inner surface of the 3D porous substrate to form temperature-controllable interface wettability. The interfacial free energy between microalgae biofilm and the substrates increased from -63.02 mJ/m2 to -31.89 mJ/m2 when temperature was lowered from 32 °C to 17 °C, weakening the adsorption capacity of cells to the surface, and making the biofilm detachment ratio increased to 50.8%. When further cooling the environmental temperature to 4 °C, the detachment capability of microalgae biofilm kept growing. 91.6% of the cells in the biofilm were harvesting from the 3D porous substrate. And the biofilm detached rate was up to 19.84 g/m2/h, realizing the temperature-controlled microalgae biofilm harvesting. But, microalgae growth results in the secretion of extracellular polymeric substances (EPS), which enhanced biofilm adhesion and made cell detachment more difficult. Thus, ultrasonic vibration was used to reinforce biofilm detachment. With the help of ultrasonic vibration, microalgae biofilm detached rate increased by 143.45% to 41.07 g/m2/h. These findings provide a solid foundation for further development of microalgae biofilm detachment and harvesting technology.

A comparison between constructed wetland substrates: Impacts on microbial community and wastewater treatment

Constructed wetlands (CWs) can play a crucial role in treating wastewater, and in the context of this study, the distillation byproduct of the whisky industry known as 'spent lees'. Here, we assess several different CW substrates (pea gravel, LECA and Alfagrog), with and without the addition of 20% biochar, in mesocosms set up to treat spent lees. Among the substrates tested, LECA + biochar and gravel + biochar showed promising results, with greater dissolved copper (dissCu) reduction, chemical oxygen demand (COD) removal, organic carbon (OC) reduction, and pH modulation. These findings indicate a potentially beneficial role for biochar in enhancing treatment efficacy, particularly in facilitating dissCu remediation and the removal of organic pollutants. In terms of microbial diversity, mesocosms including biochar generally had reduced bacterial alpha diversity, suggesting that 'fresh' (uncolonized) biochar may negatively affect microbial diversity in wetland ecosystems in the short term. After continuously supplying spent lees to mesocosms for 2-months, microbial diversity in each mesocosm dropped substantially, and moderate levels of bacterial community differentiation and high levels of fungal community differentiation were detected among mesocosms. The bacterial and fungal communities were also found to differ between the substrate and outlet water samples. Among the bacterial classes present in the mesocosms that may play a crucial role in water treatment performance, Gammaproteobacteria, Bacteroidia and Alphaproteobacteria should be further investigated. In terms of fungal classes, the role of Sordariomycetes should be explored in greater depth.

Ubiquitous nanocolloids suppress the conjugative transfer of plasmid-mediated antibiotic resistance in aqueous environment

Nanocolloids (Nc) are widespread in natural water environment, whereas the potential effects of Nc on dissemination of antibiotic resistance remain largely unknown. In this study, Nc collected from the Yellow River in Henan province was tested for its ability to influence the conjugative transfer of resistant plasmid in aqueous environment. The results revealed that the conjugative transfer of RP4 plasmid between Escherichia coli was down-regulated by 52%-91% upon exposure to 1-10 mg/L Nc and the reduction became constant when the dose became higher (20-200 mg/L). Despite the exposure of Nc activated the anti-oxidation and SOS response in bacteria through up-regulating genes involved in glutathione biosynthesis and DNA recombination, the inhibition on the synthesis and secretion of extracellular polysaccharide induced the prevention of cell-cell contact, leading to the reduction of plasmid transfer. This was evidenced by the decreased bacterial adhesion and lowered levels of genes and metabolites relevant to transmembrane transport and D-glucose phosphorylation, as clarified in phenotypic, transcriptomics and metabolomics analysis of E. coli. The significant down-regulation of glycolysis/gluconeogenesis and TCA cycle was associated with the shortage of ATP induced by Nc. The up-regulation of global regulatory genes (korA and trbA) and the reduction of plasmid genes (trfAp, trbBp, and traG) expression also contributed to the suppressed conjugation of RP4 plasmid. The obtained findings remind that the role of ubiquitous colloidal particles is nonnegligible when practically and comprehensively assessing the risk of antibiotic resistance in the environment.

Anti-Biofilm Effects of Z102-E of Lactiplantibacillus plantarum against Listeria monocytogenes and the Mechanism Revealed by Transcriptomic Analysis

Lactic acid bacteria (LAB) are the most common probiotics, and they present excellent inhibitory effects on pathogenic bacteria. This study aimed to explore the anti-biofilm potential of the purified active substance of Lactiplantibacillus plantarum, named Z102-E. The effects of Z102-E on Listeria monocytogenes were investigated in detail, and a transcriptomic analysis was conducted to reveal the anti-biofilm mechanism. The results indicated that the sub-MIC of Z102-E (3.2, 1.6, and 0.8 mg/mL) decreased the bacterial growth and effectively reduced the self-aggregation, surface hydrophobicity, sugar utilization, motility, biofilm formation, AI-2 signal molecule, contents of extracellular polysaccharides, and extracellular protein of L. monocytogenes. Moreover, the inverted fluorescence microscopy observation confirmed the anti-biofilm effect of Z102-E. The transcriptomic analysis indicated that 117 genes were up-regulated and 214 were down-regulated. Z102-E regulated the expressions of genes related to L. monocytogenes quorum sensing, biofilm formation, etc. These findings suggested that Z102-E has great application potential as a natural bacteriostatic agent.

Mechanisms of denitrifying granular sludge disintegration and calcium ion-enhanced re-granulation in acidic wastewater treatment

Granular sludge is an alternative technology for the direct treatment of acidic nitrate-containing wastewater. Rapid remediation of disintegrated granules is essential to achieve efficient nitrogen removal. In this study, denitrifying granules were inactivated and disintegrated when the influent nitrate-nitrogen concentration was elevated from 240 to 360 mg L-1 in acidic wastewater (pH = 4.1) in a sequencing batch reactor. Tightly bound extracellular polymeric substances (TB-EPS) decreased by 60%, and extracellular protein (PN) was the main component of the reduced EPS. The three-dimensional excitation emission matrices (3D-EEM) results confirmed that the PNs that decreased were mainly tryptophan-like, tyrosine-like, and aromatic. This study further confirmed that the decrease in PN was mainly from the destruction of C=O (amide I) and N-H functional groups. Overloading of nitrogen-inhibited denitrifying activity and the destruction and dissolution of TB-EPS by acidic pH were responsible for granule disintegration, with PNs playing a major role in maintaining granule stability. Based on this, new granules with an average particle size of 454.4 μm were formed after calcium chloride addition; EPS nearly doubled during granule formation with PN as the dominant component, accounting for 64.7-78.4% of the EPS. Atomic force microscopy (AFM) revealed that PN-PN adhesion increased by 1.6-4.9 times in the presence of calcium ions, accelerating the re-granulation of disintegrated particles. This study provides new insights into the disintegration and remediation of granular sludge under acidic conditions.

Potential for curdlan recovery from aerobic granular sludge wastewater treatment systems - A review

The aerobic granular sludge (AGS) biotechnology has been explored for wastewater treatment for over two decades. AGS is gaining increased interest due to its enhanced treatment performance ability and the potential for resource recovery from AGS-based wastewater treatment systems. Resource recovery from AGS is a promising approach to sustainable wastewater treatment and attaining a circular economy in the wastewater management industry. Currently, research is at an advanced stage on recovering value-added resources such as phosphorus, polyhydroxyalkanoates, alginate-like exopolysaccharides, and tryptophan from waste aerobic granules. Recently, other value-added resources, including curdlan, have been identified in the aerobic granule matrix, and this may increase the sustainability of biotechnology in the wastewater industry. This paper provides an overview of AGS resource recovery potential. In particular, the potential for enhanced curdlan biosynthesis in the granule matrix and its recovery from AGS wastewater treatment systems is outlined.

Novel biostimulant bacterial exopolysaccharides production via solid-state fermentation as a valorisation strategy for agri-food waste

Bacterial exopolysaccharides (EPS) are extracellular polymer-based substances recently defined as potential plant biostimulants, as they can increase nutrient uptake, water retention, and resistance to abiotic stress. As sugar-based substances, the bacteria producing them need to grow in a sugar-rich substrate. Hence, some agri-food by-products could be used as suitable carbon sources for EPS production as a cost-effective and more sustainable alternative to conventional substrates. Thus, this study aimed to produce EPS from specific bacterial strains through solid-state fermentation (SSF) using agri-food waste as a low-cost substrate. Six residues and five bacterial strains were tested in a lab-scale SSF system. From the assessed substrate-strain combinations, Burkholderia cepacia with ginger juice waste (GJW) resulted in the most promising considering several process parameters (EPS production, cumulative oxygen consumption, biomass growth, reducing sugars consumption). Also, dynamic monitoring of the system allowed for establishing 5 days as a suitable fermentation time. Then, using response surface methodology (Box-Behnken design), the process was optimised based on airflow rate (AF), inoculum size (IS), and micronutrient concentration (MN). In this stage, the best conditions found were at 0.049 (± 0.014) L h-1 per gram of dry matter (DM) for AF, 8.4 (± 0.9) E + 09 CFU g-1 DM for IS, and 0.07 (± 0.01) mL g-1 DM for MN, reaching up to 71.1 (± 3.2) mg crude EPS g-1 DM. Results show the potential of this approach to provide a new perspective on the value chain for the agri-food industry by introducing it to a circular economy framework.

Exogenous putrescine plays a switch-like influence on the pH stress adaptability of biofilm-based activated sludge

Microbial community adaptability to pH stress plays a crucial role in biofilm formation. This study aims to investigate the regulatory mechanisms of exogenous putrescine on pH stress, as well as enhance understanding and application for the technical measures and molecular mechanisms of biofilm regulation. Findings demonstrated that exogenous putrescine acted as a switch-like distributor affecting microorganism pH stress, thus promoting biofilm formation under acid conditions while inhibiting it under alkaline conditions. As pH decreases, the protonation degree of putrescine increases, making putrescine more readily adsorbed. Protonated exogenous putrescine could increase cell membrane permeability, facilitating its entry into the cell. Subsequently, putrescine consumed intracellular H+ by enhancing the glutamate-based acid resistance strategy and the γ-aminobutyric acid metabolic pathway to reduce acid stress on cells. Furthermore, putrescine stimulated ATPase expression, allowing for better utilization of energy in H+ transmembrane transport and enhancing oxidative phosphorylation activity. However, putrescine protonation was limited under alkaline conditions, and the intracellular H+ consumption further exacerbated alkali stress and inhibits cellular metabolic activity. Exogenous putrescine promoted the proportion of fungi and acidophilic bacteria under acidic stress and alkaliphilic bacteria under alkali stress while having a limited impact on fungi in alkaline biofilms. Increasing Bdellovibrio under alkali conditions with putrescine further aggravated the biofilm decomposition. This research shed light on the unclear relationship between exogenous putrescine, environmental pH, and pH stress adaptability of biofilm. By judiciously employing putrescine, biofilm formation could be controlled to meet the needs of engineering applications with different characteristics.IMPORTANCEThe objective of this study is to unravel the regulatory mechanism by which exogenous putrescine influences biofilm pH stress adaptability and understand the role of environmental pH in this intricate process. Our findings revealed that exogenous putrescine functioned as a switch-like distributor affecting the pH stress adaptability of biofilm-based activated sludge, which promoted energy utilization for growth and reproduction processes under acidic conditions while limiting biofilm development to conserve energy under alkaline conditions. This study not only clarified the previously ambiguous relationship between exogenous putrescine, environmental pH, and biofilm pH stress adaptability but also offered fresh insights into enhancing biofilm stability within extreme environments. Through the modulation of energy utilization, exerting control over biofilm growth and achieving more effective engineering goals could be possible.

Mechanisms of conjugative transfer of antibiotic resistance genes induced by extracellular polymeric substances: Insights into molecular diversities and electron transfer properties

Dissemination of antibiotic resistance genes (ARGs) has become a critical threat to public health. Activated sludge, rich in extracellular polymeric substances (EPS), is an important pool of ARGs. In this study, mechanisms of conjugation transfer of ARGs induced by EPS, including tightly bound EPS (TBEPS), soluble EPS (SEPS), and loosely bound EPS (LBEPS), were explored in terms of molecular diversities and electron transfer properties of EPS. Conjugation transfer frequency was increased by 9.98-folds (SEPS), 4.21-folds (LBEPS), and 15.75-folds (TBEPS) versus the control, respectively. Conjugation-related core genes involving SOS responses (9 genes), membrane permeability (18 genes), intercellular contact (17 genes), and energy metabolism pathways (13 genes) were all upregulated, especially in the presence of TBEPS. Carbohydrates and aliphatic substances in SEPS and LBEPS were contributors to ARG transfer, via influencing reactive oxygen species (ROS) formation (SEPS) and ROS and adenosine triphosphate (ATP) production (LBEPS). TBEPS had the highest redox potential and greatest lability and facilitated electron transfer and alternated respiration between cells, thus promoting ARG transfer by producing ATP. Generally, the chemical molecular characteristics and redox properties of EPS facilitated ARG transfer mainly by influencing lipid peroxidation and ATP, respectively.

Effect of magnetic field coupled magnetic biochar on membrane bioreactor efficiency, membrane fouling mitigation and microbial communities

The excitation by magnetic field was established to mitigate the membrane fouling of magnetic biochar (MB)-supplemented membrane bioreactor (MBR) in this study. The results showed that the transmembrane pressure (TMP) increase rates decreased by about 8 % after introducing the magnetic field compared with the magnetic biochar-MBR (MB-MBR). Membrane characterization suggested that the flocs in the magnetic field-magnetic biochar-MBR (MF-MB-MBR) formed a highly permeable developed cake layer, and a fluffier and more porous deposited layer on membrane surface, which minimized fouling clogging of the membrane pores. Further mechanistic investigation revealed that the decrease in contact angle of fouled membrane surface in MF-MB-MBR, i.e. an enhanced membrane hydrophilicity, is considered important for forming highly permeable layers. Additionally, the magnetic field was demonstrated to have a positive effect on the improvement of the magneto-biological effect, the enhancement of charge neutralization and adsorption bridging between sludge and magnetic biochar, and the reduction of formation of extracellular polymeric substances (EPSs), which all yielded sludge flocs with a large pore structure conducive to form a fluffy and porous deposited layer in the membrane surface. Furthermore, high-throughput sequencing analysis revealed that the magnetic field also led to a reduction in microbial diversity, and that it promoted the enrichment of specific functional microbial communities (e.g. Bacteroidetes and Firmicutes) playing an important role in mitigating membrane fouling. Taken together, this study of magnetic field-enhanced magnetic biochar for MBR membrane fouling mitigation provides insights important new ideas for more effective and sustainable operation strategies.

Effectiveness of biological drying for citric acid dewatered sludge: Evaluating the impact of energy-efficient ventilation strategies

The effectiveness of dehydration and utilization processes for citric acid dewatered sludge is hampered by its high concentrations of polysaccharides, proteins, and water-binding properties of microbial extracellular polymers (EPS). This research explores the efficacy and mechanisms involved in extracting water from this type of sludge using biological drying technology, with varying rates of ventilation. Especially pertinent was the use of low ventilation rates as control variables. Our results suggest that a scheduled intermittent ventilation at lower rates allows for the most efficient removal of water, achieving a rate of 41.71 % within eight days, according to the zero-order kinetic model. Remarkably, the peak temperature registered was 60 °C, reaching this threshold in just 0.1 days and maintaining high temperatures for approximately 5.9 days. Component analysis of organic matter illustrated a preferential degradation process for lipids under these ventilation conditions which is pivotal for releasing and transforming bound water for efficient extraction, as well as facilitating the breakdown of easily hydrolysable materials. Further, polysaccharide/protein (EPS) decomposition contributed to water removal, though less significantly. The periodic ventilation strategy allowed for the maximum cumulative temperature to be sustained, demonstrating superior efficiency in harnessing bio-generated heat (82.77 % for water evaporation), resulting in dry sludge suitable for self-sustained combustion at relatively low cost ($26.61/t). Highlighted by this study is the considerable potential of energy-efficient ventilation methods in the biological drying treatment of citric acid fermented sludge and similar industrial waste materials.

EDTA enables to alleviate impacts of metal ions on conjugative transfer of antibiotic resistance genes

Various heavy metals are reported to be able to accelerate horizontal transfer of antibiotic resistance genes (ARGs). In real water environmental settings, ubiquitous complexing agents would affect the environmental behaviors of heavy metal ions due to the formation of metal-organic complexes. However, little is known whether the presence of complexing agents would change horizontal gene transfer due to heavy metal exposure. This study aimed to fill this gap by investigating the impacts of a typical complexing agent ethylenediaminetetraacetic acid (EDTA) on the conjugative transfer of plasmid-mediated ARGs induced by a range of heavy metal ions. At the environmentally relevant concentration (0.64 mg L-1) of metal ions, all the tested metal ions (Mg2+, Ca2+, Co2+, Pb2+, Ni2+, Cu2+, and Fe3+) promoted conjugative transfer of ARGs, while an inhibitory effect was observed at a relatively higher concentration (3.20 mg L-1). In contrast, EDTA (0.64 mg L-1) alleviated the effects of metal ions on ARGs conjugation transfer, evidenced by 11 %-66 % reduction in the conjugate transfer frequency. Molecular docking and dynamics simulations disclosed that this is attributed to the stronger binding of metal ions with the lipids in cell membranes. Under metal-EDTA exposure, gene expressions related to oxidative stress response, cell membrane permeability, intercellular contact, energy driving force, mobilization, and channels of plasmid transfer were suppressed compared with the metal ions exposure. This study offers insights into the alleviation mechanisms of complexing agents on ARGs transfer induced by free metal ions.

EPS Production by Lacticaseibacillus casei Using Glycerol, Glucose, and Molasses as Carbon Sources

This study demonstrates that Lactobacillus can produce exopolysaccharides (EPSs) using alternative carbon sources, such as sugarcane molasses and glycerol. After screening 22 strains of Lactobacillus to determine which achieved the highest production of EPS based on dry weight at 37 °C, the strain Ke8 (L. casei) was selected for new experiments. The EPS obtained using glycerol and glucose as carbon sources was classified as a heteropolysaccharide composed of glucose and mannose, containing 1730 g.mol-1, consisting of 39.4% carbohydrates and 18% proteins. The EPS obtained using molasses as the carbon source was characterized as a heteropolysaccharide composed of glucose, galactose, and arabinose, containing 1182 g.mol-1, consisting of 52.9% carbohydrates and 11.69% proteins. This molecule was characterized using Size Exclusion Chromatography (HPLC), Gas chromatography-mass spectrometry (GC-MS), Fourier-transform infrared spectroscopy (FTIR), and proton nuclear magnetic resonance spectroscopy (1H-NMR). The existence of polysaccharides was confirmed via FT-IR and NMR analyses. The results obtained suggest that Lacticaseibacillus casei can grow in media that use alternative carbon sources such as glycerol and molasses. These agro-industry residues are inexpensive, and their use contributes to sustainability. The lack of studies regarding the use of Lacticaseibacillus casei for the production of EPS using renewable carbon sources from agroindustry should be noted.

Iron bioleaching and polymers accumulation by an extreme acidophilic bacterium

In many European regions, both local metallic and non-metallic raw materials are poorly exploited due to their low quality and the lack of technologies to increase their economic value. In this context, the development of low cost and eco-friendly approaches, such as bioleaching of metal impurities, is crucial. The acidophilic strain Acidiphilium sp. SJH reduces Fe(III) to Fe(II) by coupling the oxidation of an organic substrate to the reduction of Fe(III) and can therefore be applied in the bioleaching of iron impurities from non-metallic raw materials. In this work, the physiology of Acidiphilium sp. SJH and the reduction of iron impurities from quartz sand and its derivatives have been studied during growth on media supplemented with various carbon sources and under different oxygenation conditions, highlighting that cell physiology and iron reduction are tightly coupled. Although the organism is known to be aerobic, maximum bioleaching performance was obtained by cultures cultivated until the exponential phase of growth under oxygen limitation. Among carbon sources, glucose has been shown to support faster biomass growth, while galactose allowed highest bioleaching. Moreover, Acidiphilium sp. SJH cells can synthesise and accumulate Poly-β-hydroxybutyrate (PHB) during the process, a polymer with relevant application in biotechnology. In summary, this work gives an insight into the physiology of Acidiphilium sp. SJH, able to use different carbon sources and to synthesise a technologically relevant polymer (PHB), while removing metals from sand without the need to introduce modifications in the process set up.

Microbial Remediation of Crude Oil in Saline Conditions by Oil-Degrading Bacterium Priestia megaterium FDU301

Salinity greatly affects the microbial degradation process of crude oil; thus, the isolation and identification of halotolerant microbes is essential. Limited studies explored how microbes respond to increased salinity. In this study, an oil-degrading bacterium Priestia megaterium FDU301 was isolated from the Dagang oil field, which can tolerate a salinity of 6%. Compared to the non-saline condition, oil degradation ratios by P. megaterium FDU301 increased by 15.27% and 11.26% in 0.5% and 3.5% salinity media, respectively. Meanwhile, bacteria degraded various components of crude oil more thoroughly in saline environments, especially mid-chain hydrocarbons (C11-C18). Surface tension under salt stress was lower than that in the non-saline medium, indicating that the amount of biosurfactants produced by bacteria was increased. The microbial activity enhanced markedly in response to increased salinity, which was the main factor for the high degradation ability. As a vital component of biofilms, the production of polysaccharides was accelerated with P. megaterium FDU301 inoculation in saline environments. These results indicate that P. megaterium FDU301 has great potential application in oil bioremediation in saline environments.

Treatment of low-pH rubber wastewater using ureolytic bacteria and the production of calcium carbonate precipitate for soil stabilization

Rubber wastewater contains variable low pH with a high load of nutrients such as nitrogen, phosphorous, suspended solids, high biological oxygen demand (BOD), and chemical oxygen demand (COD). Ureolytic and biofilm-forming bacterial strains Bacillus sp. OS26, Bacillus cereus OS36, Lysinibacillus macroides ST13, and Burkholderia multivorans DF12 were isolated from rubber processing centres showed high urease activity. Microscopic analyses evaluated the structural organization of biofilm. Extracellular polymeric substances (EPS) matrix of the biofilm of the strains showed the higher abundance of polysaccharides and lipids which help in the attachment and absorption of nutrients. The functional groups of polysaccharides, proteins, and lipids present in EPS were revealed by ATR-FTIR and 1H NMR. A consortium composed of B. cereus OS36, L. macroides ST13, and B. multivorans DF12 showed the highest biofilm formation, and efficiently reduced 62% NH3, 72% total nitrogen, and 66% PO43-. This consortium also reduced 76% BOD, 61% COD, and 68% TDS. After bioremediation, the pH of the remediated wastewater increased to 11.19. To reduce the alkalinity of discharged wastewater, CaCl2 and urea were added for calcite reaction. The highest CaCO3 precipitate was obtained at 24.6 mM of CaCl2, 2% urea, and 0.0852 mM of nickel (Ni2+) as a co-factor which reduced the pH to 7.4. The elemental composition of CaCO3 precipitate was analyzed by SEM-EDX. XRD analysis of the bacterially-induced precipitate revealed a crystallinity index of 0.66. The resulting CaCO3 precipitate was used as soil stabilizer. The precipitate filled the void spaces of the treated soil, reduced the permeability by 80 times, and increased the compression by 8.56 times than untreated soil. Thus, CaCO3 precipitated by ureolytic and biofilm-forming bacterial consortium through ureolysis can be considered a promising approach for neutralization of rubber wastewater and soil stabilization.

Efficacy of exopolysaccharide in dye-laden wastewater treatment: A comprehensive review

The discharge of dye-laden wastewater into the water streams causes severe water and soil pollution, which poses a global threat to aquatic ecosystems and humans. A diverse array of microorganisms such as bacteria, fungi, and algae produce exopolysaccharides (EPS) of different compositions and exhibit great bioflocculation potency to sustainably eradicate dyes from water bodies. Nanomodified chemical composites of EPS enable their recyclability during dye-laden wastewater treatment. Nevertheless, the selection of potent EPS-producing strains and physiological parameters of microbial growth and the remediation process could influence the removal efficiency of EPS. This review will intrinsically discuss the fundamental importance of EPS from diverse microbial origins and their nanomodified chemical composites, the mechanisms in EPS-mediated bioremediation of dyes, and the parametric influences on EPS-mediated dye removal through sorption/bioflocculation. This review will pave the way for designing and adopting futuristic green and sustainable EPS-based bioremediation strategies for dye-laden wastewater in situ and ex situ.

Remediation of toxic metal and metalloid pollution with plant symbiotic fungi

Anthropogenic activities have dramatically accelerated the release of toxic metal(loid)s into soil and water, which can be subsequently accumulated in plants and animals, threatening biodiversity, human health, and food security. Compared to physical and chemical remediation, bioremediation of metal(loid)-polluted soil using plants and/or plant symbiotic fungi is usually low-cost and environmentally friendly. Mycorrhizal fungi and endophytic fungi are two major plant fungal symbionts. Mycorrhizal fungi can immobilize metal(loid)s via constitutive mechanisms, including intracellular sequestration with vacuoles and vesicles and extracellular immobilization by cell wall components and extracellular polymeric substances such as glomalin. Mycorrhizal fungi can improve the efficacy of phytoremediation by promoting plant symplast and apoplast pathways. Endophytic fungi also use constitutive cellular components to immobilize metal(loid)s and to reduce the accumulation of metal(loid)s in plants by modifying plant physiological status. However, a specific mechanism for the removal of methylmercury pollution was recently discovered in the endophytic fungi Metarhizium, which could be acquired from bacteria via horizontal gene transfer. In contrast to mycorrhizal fungi that are obligate biotrophs, some endophytic fungi, such as Metarhizium and Trichoderma, can be massively and cost-effectively produced, so they seem to be well-placed for remediation of metal(loid)-polluted soil on a large scale.

Tapping the biosynthetic potential of marine Bacillus licheniformis LHG166, a prolific sulphated exopolysaccharide producer: structural insights, bio-prospecting its antioxidant, antifungal, antibacterial and anti-biofilm potency as a novel anti-infective lead

The escalating global threat of antimicrobial resistance necessitates prospecting uncharted microbial biodiversity for novel therapeutic leads. This study mines the promising chemical richness of Bacillus licheniformis LHG166, a prolific exopolysaccharide (EPSR2-7.22 g/L). It comprised 5 different monosaccharides with 48.11% uronic acid, 17.40% sulfate groups, and 6.09% N-acetyl glucosamine residues. EPSR2 displayed potent antioxidant activity in DPPH and ABTS+, TAC and FRAP assays. Of all the fungi tested, the yeast Candida albicans displayed the highest susceptibility and antibiofilm inhibition. The fungi Aspergillus niger and Penicillium glabrum showed moderate EPSR2 susceptibility. In contrast, the fungi Mucor circinelloides and Trichoderma harzianum were resistant. Among G+ve tested bacteria, Enterococcus faecalis was the most susceptible, while Salmonella typhi was the most sensitive to G-ve pathogens. Encouragingly, EPSR2 predominantly demonstrated bactericidal effects against both bacterial classes based on MBC/MIC of either 1 or 2 superior Gentamicin. At 75% of MBC, EPSR2 displayed the highest anti-biofilm activity of 88.30% against B. subtilis, while for G-ve antibiofilm inhibition, At 75% of MBC, EPSR2 displayed the highest anti-biofilm activity of 96.63% against Escherichia coli, Even at the lowest dose of 25% MBC, EPSR2 reduced biofilm formation by 84.13% in E. coli, 61.46% in B. subtilis. The microbial metabolite EPSR2 from Bacillus licheniformis LHG166 shows promise as an eco-friendly natural antibiotic alternative for treating infections and oxidative stress.