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Ahmad J, Grunden A, Kuzma J. Biotechnology executive order opens door for regulatory reform and social acceptance of genetically engineered microbes in agriculture. GM CROPS & FOOD 2024; 15:248-261. [PMID: 39066641 DOI: 10.1080/21645698.2024.2381294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 06/04/2024] [Accepted: 07/14/2024] [Indexed: 07/30/2024]
Abstract
In the United States, regulatory review of genetically engineered microbes for agriculture falls under the Coordinated Framework for the Regulation of Biotechnology (CFRB). However, the lack of a centralized regulatory pathway and multiple oversight authorities can lead to uncertainty in regulatory review. Using three microbial-based technologies for agriculture as illustrative examples, this commentary identifies the weaknesses and challenges associated with the CFRB by assessing the current system and proposed changes to the system under a multi criteria decision analysis framework. In addition, it discusses opportunities for regulatory reform to improve clarity, efficiency, and public acceptance of genetically engineered microbes in agriculture under the CHIPS and Science Act and the 2022 Executive Order on the Bioeconomy.
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Affiliation(s)
- Jabeen Ahmad
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, USA
- Genetic Engineering and Society Center, North Carolina State University, Raleigh, NC, USA
| | - Amy Grunden
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, USA
- Genetic Engineering and Society Center, North Carolina State University, Raleigh, NC, USA
| | - Jennifer Kuzma
- Genetic Engineering and Society Center, North Carolina State University, Raleigh, NC, USA
- School of Public and International Affairs, North Carolina State University, Raleigh, NC, USA
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2
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Zhang F, Fu H, Zhang D, Lou H, Sun X, Sun P, Wang X, Bao M. Co-pollution risk of petroleum hydrocarbons and heavy metals in typically polluted estuarine wetlands: Insights from the Xiaoqing River. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 948:174694. [PMID: 38997022 DOI: 10.1016/j.scitotenv.2024.174694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 07/08/2024] [Accepted: 07/09/2024] [Indexed: 07/14/2024]
Abstract
Excessive accumulation of total petroleum hydrocarbons (TPH) and heavy metals (HMs) in sediments poses a significant threat to the estuarine ecosystem. In this study, the spatial and temporal distribution, ecological risks, sources, and their impacts on the microbial communities of TPH and nine HMs in the estuarine sediments of the Xiaoqing River were determined. Results showed that the spatial distribution of TPH and HMs were similar but opposite in temporal. Ni, Cr, Pb, and Co concentrations were similar to the reference values (RVs). However, the other five HMs (Cu, Zn, Cd, As, and Hg) and TPH concentrations were 2.00-763.44 times higher than RVs; hence, this deserves attention, particularly for Hg. Owing to the water content of the sediments, Hg was mainly concentrated on the surface during the wet season and on the bottom during the dry season. Moreover, because of weak hydrodynamics and upstream pollutant sinks, TPH-HMs in the river were higher than those in the estuary. TPH and HM concentrations were negatively correlated with microbial diversity. Structural equation modeling showed that HMs (path coefficient = -0.50, p < 0.001) had a negative direct effect on microbial community structure and a positive indirect effect on TPH. The microbial community (path coefficient = 0.31, 0.01 < p < 0.05) was significantly correlated with TPH. In summary, this study explores both the chemical analysis of pollutants and their interaction with microbial communities, providing a better understanding of the co-pollution of TPH and HMs in estuarine sediments.
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Affiliation(s)
- Feifei Zhang
- Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education/Institute for Advanced Ocean Study, Ocean University of China, Qingdao 266100, China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, China
| | - Hongrui Fu
- Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education/Institute for Advanced Ocean Study, Ocean University of China, Qingdao 266100, China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, China
| | - Dong Zhang
- Shouguang Marine Fishery Development Center, Weifang 262700, China
| | - Huawei Lou
- Shouguang Marine Fishery Development Center, Weifang 262700, China
| | - Xiaojun Sun
- Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education/Institute for Advanced Ocean Study, Ocean University of China, Qingdao 266100, China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, China.
| | - Peiyan Sun
- Key Laboratory of Ecological Warning, Protection & Restoration for Bohai Sea, Ministry of Natural Resources, Qingdao 266100, China
| | - Xinping Wang
- Key Laboratory of Ecological Warning, Protection & Restoration for Bohai Sea, Ministry of Natural Resources, Qingdao 266100, China
| | - Mutai Bao
- Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education/Institute for Advanced Ocean Study, Ocean University of China, Qingdao 266100, China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, China.
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3
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Ma X. Heavy metals remediation through lactic acid bacteria: Current status and future prospects. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174455. [PMID: 38964392 DOI: 10.1016/j.scitotenv.2024.174455] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 06/14/2024] [Accepted: 07/01/2024] [Indexed: 07/06/2024]
Abstract
With the development of industrialization and urbanization, heavy metal (HM) pollution has become an urgent problem in many countries. The use of microorganisms to control HM pollution has attracted the attention of many scholars due to its advantages of mild conditions, low process cost, and no secondary pollution. In this context, this review aimed to compile recent advances on the potential of lactic acid bacteria (LAB) as HMs biosorbents. As a food-safe class of probiotic, LAB can not only be used for HM remediation in soil and wastewater, but most importantly, can be used for metal removal in food. The extracellular adsorption and intracellular accumulation are the main mechanisms of HM removal by LAB. Lactic acid (LA) fermentation is also one of the removal mechanisms, especially in the food industry. The pH, temperature, biomass, ion concentration and adsorption time are the essential parameters to be considered during the bioremediation. Although the LAB remediation is feasible in theory and lab-scale experiments, it is limited in practical applications due to its low efficiency. Therefore, the commonly used methods to improve the adsorption efficiency of LAB, including pretreatment and mixed-cultivation, are also summarized in this review. Finally, based on the review of literature, this paper presents the emerging strategies to overcome the low adsorption capacity of LAB. This review proposes the future investigations required for this field, and provides theoretical support for the practical application of LAB bioremediation of HMs.
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Affiliation(s)
- Xiaoyu Ma
- China Institute of Geo-Environment Monitoring, China Geological Survey, Beijing 100081, China.
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Wu C, Huang F, Wei L, Yi S, Wu Y, Huang Z, Yi M, Li F. Do the residual metals in multiple environmental media surrounding mines pose ecological and health risks? A case of an abandoned mining area in central south China. ENVIRONMENTAL RESEARCH 2024; 257:119279. [PMID: 38821461 DOI: 10.1016/j.envres.2024.119279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Revised: 05/27/2024] [Accepted: 05/29/2024] [Indexed: 06/02/2024]
Abstract
Despite effective mining environmental regulations, residual metal pollution persists, leading to significant ecological harm and posing substantial risks to human well-being. This study employed multiple-criteria methods to investigate the ecological and health risks caused by metals in multiple environmental media (e.g., arable soil, indoor dust, PM10, homegrown vegetables, and rice) around abandoned mine areas (MA) in central south China. The study also aimed to identify predominant risk factors and the main exposure pathway. The findings revealed that metal levels and risks in the environmental media surrounding the MA were significantly higher than those in the control areas (away from abandoned mines, CA). This indicates that the accumulation of metals in the environmental media surrounding the MA was attributed to the previous mining activities. Variations in metal content were observed among different environmental media in MA, with Cd from mining source being the primary pollutant in arable soil, indoor dust, PM10, and vegetables, while As from agricultural source was the main pollutant in rice. Additionally, the consumption of Cd-contaminated vegetables and As-contaminated rice emerged as the primary routes of health hazards for the local population, leading to significant non-carcinogenic and carcinogenic risks. Consequently, it is imperative for the government and mining companies to promptly establish risk control and remedial strategies for mitigating residual metal levels in multiple environmental media surrounding the MA.
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Affiliation(s)
- Chen Wu
- College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China; Hunan Provincial University Key Laboratory for Environmental and Ecological Health, Xiangtan, 411105, China; The Experimental Teaching Center in College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China
| | - Fenglian Huang
- State Environmental Protection Key Laboratory of Monitoring for Heavy Metal Pollutants, Changsha, 410014, China; Changsha Environmental Protection Vocational College, Changsha, 410004, China
| | - Lanlan Wei
- College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China; Hunan Provincial University Key Laboratory for Environmental and Ecological Health, Xiangtan, 411105, China; The Experimental Teaching Center in College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China
| | - Shengwei Yi
- College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China; Hunan Provincial University Key Laboratory for Environmental and Ecological Health, Xiangtan, 411105, China; The Experimental Teaching Center in College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China
| | - Yujun Wu
- College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China; Hunan Provincial University Key Laboratory for Environmental and Ecological Health, Xiangtan, 411105, China; The Experimental Teaching Center in College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China
| | - Zhongting Huang
- Changsha Environmental Protection Vocational College, Changsha, 410004, China
| | - Min Yi
- Hunan Ecological and Environmental Monitoring Center, Changsha, 410014, China
| | - Feng Li
- College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China; Hunan Provincial University Key Laboratory for Environmental and Ecological Health, Xiangtan, 411105, China; The Experimental Teaching Center in College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China.
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5
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Shahzad A, Zahra A, Li HY, Qin M, Wu H, Wen MQ, Ali M, Iqbal Y, Xie SH, Sattar S, Zafar S. Modern perspectives of heavy metals alleviation from oil contaminated soil: A review. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024; 282:116698. [PMID: 38991309 DOI: 10.1016/j.ecoenv.2024.116698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 07/02/2024] [Accepted: 07/04/2024] [Indexed: 07/13/2024]
Abstract
Heavy metal poisoning of soil from oil spills causes serious environmental problems worldwide. Various causes and effects of heavy metal pollution in the soil environment are discussed in this article. In addition, this study explores new approaches to cleaning up soil that has been contaminated with heavy metals as a result of oil spills. Furthermore, it provides a thorough analysis of recent developments in remediation methods, such as novel nano-based approaches, chemical amendments, bioremediation, and phytoremediation. The objective of this review is to provide a comprehensive overview of the removal of heavy metals from oil-contaminated soils. This review emphasizes on the integration of various approaches and the development of hybrid approaches that combine various remediation techniques in a synergistic way to improve sustainability and efficacy. The study places a strong emphasis on each remediation strategy that can be applied in the real-world circumstances while critically evaluating its effectiveness, drawbacks, and environmental repercussions. Additionally, it discusses the processes that reduce heavy metal toxicity and improve soil health, taking into account elements like interactions between plants and microbes, bioavailability, and pollutant uptake pathways. Furthermore, the current study suggests that more research and development is needed in this area, particularly to overcome current barriers, improve our understanding of underlying mechanisms, and investigate cutting-edge ideas that have the potential to completely transform the heavy metal clean up industry.
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Affiliation(s)
- Asim Shahzad
- College of Geography and Environmental Sciences, Henan University Kaifeng, China.
| | - Atiqa Zahra
- Department of Botany, Mohi-ud-Din Islamic University, Nerian Sharif, AJK, Pakistan.
| | - Hao Yang Li
- College of Geography and Environmental Sciences, Henan University Kaifeng, China.
| | - Mingzhou Qin
- College of Geography and Environmental Sciences, Henan University Kaifeng, China.
| | - Hao Wu
- College of Geography and Environmental Sciences, Henan University Kaifeng, China.
| | - Mei Qi Wen
- College of Geography and Environmental Sciences, Henan University Kaifeng, China.
| | - Mushtaque Ali
- State Key Laboratory of Crop Stress Adaptation and Improvement, State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, Kaifeng, China.
| | - Younas Iqbal
- National Demonstration Centre for Environmental and Planning, College of Geography and Environmental Sciences, Henan University, Kaifeng, China.
| | - Shao Hua Xie
- College of Geography and Environmental Sciences, Henan University Kaifeng, China.
| | - Shehla Sattar
- Department of environmental sciences, University of Swabi, Pakistan.
| | - Sadia Zafar
- Department of Botany, Division of Science and Technology, University of Education, Lahore, Punjab 54770, Pakistan.
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6
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Duan Z, Wang Q, Wang T, Kong X, Zhu G, Qiu G, Yu H. Application of microbial agents in organic solid waste composting: a review. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2024; 104:5647-5659. [PMID: 38318758 DOI: 10.1002/jsfa.13323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 01/16/2024] [Accepted: 01/17/2024] [Indexed: 02/07/2024]
Abstract
The rapid growth of organic solid waste has recently exacerbated environmental pollution problems, and its improper treatment has led to the loss of a large number of biomass resources. Here, we expound the advantages of microbial agents composting compared with conventional organic solid waste treatment technology, and review the important role of microbial agents composting in organic solid waste composting from the aspects of screening and identification, optimization of conditions, mechanism of action, combination with other technologies and ultra-high-temperature and ultra-low-temperature microbial composting. We discuss the value of microorganisms with different growth conditions in organic solid waste composting, and put forward a seasonal multi-temperature composite microbial composting technology. Provide new ideas for the all-round treatment of microbial agents in organic solid waste in the future. © 2024 Society of Chemical Industry.
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Affiliation(s)
- Zhongxu Duan
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
| | - Quanying Wang
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
| | - Tianye Wang
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
| | - Xiangfen Kong
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
| | - Guopeng Zhu
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
| | - Guankai Qiu
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Hongwen Yu
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
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Hemati S, Heidari M, Momenbeik F, Khodabakhshi A, Fadaei A, Farhadkhani M, Mohammadi-Moghadam F. Co-occurrence of polycyclic aromatic hydrocarbons and heavy metals in various environmental matrices of a chronic petroleum polluted region in Iran; Pollution characterization, and assessment of ecological and human health risks. JOURNAL OF HAZARDOUS MATERIALS 2024; 478:135504. [PMID: 39154473 DOI: 10.1016/j.jhazmat.2024.135504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2024] [Revised: 08/05/2024] [Accepted: 08/12/2024] [Indexed: 08/20/2024]
Abstract
Oil spills from pipeline accidents can result in long-lasting health effect in the people living in a polluted region. In this study, the level of the 16 US EPA priority polycyclic aromatic hydrocarbons (PAHs) and heavy metals (HMs) have been analyzed in environmental matrices of a region with frequent oil pipeline accidents in Iran. The results showed that the mean concentration of ΣPAHs and ΣHMs decreased from the upstream to the downstream and also the levels were higher in the wet season than those in the dry season. The average concentration of HMs in sediments was higher than that in other environments. The 3-ring and 4-ring PAHs were dominant in all of the studied matrices with the average values of 32.61 % and 45.85 %, respectively. The ecological risks of PAHs and HMs were medium and high in all matrices, respectively. In wet season, the total cancer risk (TCR) related to PAHs in agricultural soil was greater than 10-4, whereas it's very close to the threshold for HMs in water. This study offers a reference for assessing the long-term impact of oil spills in contaminated environmental matrices. The results are crucial for developing effective strategies to mitigate oil pollution impacts and protect environmental and public health.
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Affiliation(s)
- Sara Hemati
- Department of Environmental Health Engineering, School of Health, Shahrekord University of Medical Sciences, Shahrekord, Iran.
| | - Mohsen Heidari
- Department of Environmental Health Engineering, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran.
| | | | - Abbas Khodabakhshi
- Department of Environmental Health Engineering, School of Health, Shahrekord University of Medical Sciences, Shahrekord, Iran.
| | - Abdolmajid Fadaei
- Department of Environmental Health Engineering, School of Health, Shahrekord University of Medical Sciences, Shahrekord, Iran.
| | - Marzieh Farhadkhani
- Assistant Professor of Environmental Health, Educational Development Center, Shahrekord University of Medical Sciences, Shahrekord, Iran.
| | - Fazel Mohammadi-Moghadam
- Department of Environmental Health Engineering, School of Health, Shahrekord University of Medical Sciences, Shahrekord, Iran.
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Deng YD, Zhang WH, Zuo ZH, Zhang H, Xu J, Gao JJ, Wang B, Li ZJ, Fu XY, Wang LJ, Wang Y, Tian YS, Peng RH, Yao QH. The complete degradation of 1,2-dichloroethane in Escherichia coli by metabolic engineering. JOURNAL OF HAZARDOUS MATERIALS 2024; 472:134476. [PMID: 38691996 DOI: 10.1016/j.jhazmat.2024.134476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Revised: 04/01/2024] [Accepted: 04/27/2024] [Indexed: 05/03/2024]
Abstract
1,2-Dichloroethane (1,2-DCA), a widely utilized chemical intermediate and organic solvent in industry, frequently enters the environment due to accidental leaks and mishandling during application processes. Thus, the in-situ remediation of contaminated sites has become increasingly urgent. However, traditional remediation methods are inefficient and costly, while bioremediation presents a green, efficient, and non-secondary polluting alternative. In this study, an engineered strain capable of completely degrading 1,2-DCA was constructed. We introduced six exogenous genes of the 1,2-DCA degradation pathway into E. coli and confirmed their normal transcription and efficient expression in this engineered strain through qRT-PCR and proteomics. The degradation experiments showed that the strain completely degraded 2 mM 1,2-DCA within 12 h. Furthermore, the results of isotope tracing verified that the final degradation product, malic acid, entered the tricarboxylic acid cycle (TCA) of E. coli and was ultimately fully metabolized. Also, morphological changes in the engineered strain and control strain exposed to 1,2-DCA were observed under SEM, and the results revealed that the engineered strain is more tolerant to 1,2-DCA than the control strain. In conclusion, this study paved a new way for humanity to deal with the increasingly complex environmental challenges.
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Affiliation(s)
- Yong-Dong Deng
- Biotechnology Research Institute of Shanghai Academy of Agricultural Sciences, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Shanghai 201106, China; Key Laboratory for Safety Assessment (Enviornment) of Agricultural Genetically Modified Organisms, Ministry of Agriculture and Rural Affairs, P.R. China
| | - Wen-Hui Zhang
- Biotechnology Research Institute of Shanghai Academy of Agricultural Sciences, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Shanghai 201106, China; Key Laboratory for Safety Assessment (Enviornment) of Agricultural Genetically Modified Organisms, Ministry of Agriculture and Rural Affairs, P.R. China
| | - Zhi-Hao Zuo
- Biotechnology Research Institute of Shanghai Academy of Agricultural Sciences, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Shanghai 201106, China; Key Laboratory for Safety Assessment (Enviornment) of Agricultural Genetically Modified Organisms, Ministry of Agriculture and Rural Affairs, P.R. China
| | - Hao Zhang
- Biotechnology Research Institute of Shanghai Academy of Agricultural Sciences, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Shanghai 201106, China; Key Laboratory for Safety Assessment (Enviornment) of Agricultural Genetically Modified Organisms, Ministry of Agriculture and Rural Affairs, P.R. China
| | - Jing Xu
- Biotechnology Research Institute of Shanghai Academy of Agricultural Sciences, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Shanghai 201106, China; Key Laboratory for Safety Assessment (Enviornment) of Agricultural Genetically Modified Organisms, Ministry of Agriculture and Rural Affairs, P.R. China
| | - Jian-Jie Gao
- Biotechnology Research Institute of Shanghai Academy of Agricultural Sciences, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Shanghai 201106, China; Key Laboratory for Safety Assessment (Enviornment) of Agricultural Genetically Modified Organisms, Ministry of Agriculture and Rural Affairs, P.R. China
| | - Bo Wang
- Biotechnology Research Institute of Shanghai Academy of Agricultural Sciences, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Shanghai 201106, China; Key Laboratory for Safety Assessment (Enviornment) of Agricultural Genetically Modified Organisms, Ministry of Agriculture and Rural Affairs, P.R. China
| | - Zhen-Jun Li
- Biotechnology Research Institute of Shanghai Academy of Agricultural Sciences, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Shanghai 201106, China; Key Laboratory for Safety Assessment (Enviornment) of Agricultural Genetically Modified Organisms, Ministry of Agriculture and Rural Affairs, P.R. China
| | - Xiao-Yan Fu
- Biotechnology Research Institute of Shanghai Academy of Agricultural Sciences, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Shanghai 201106, China; Key Laboratory for Safety Assessment (Enviornment) of Agricultural Genetically Modified Organisms, Ministry of Agriculture and Rural Affairs, P.R. China
| | - Li-Juan Wang
- Biotechnology Research Institute of Shanghai Academy of Agricultural Sciences, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Shanghai 201106, China; Key Laboratory for Safety Assessment (Enviornment) of Agricultural Genetically Modified Organisms, Ministry of Agriculture and Rural Affairs, P.R. China
| | - Yu Wang
- Biotechnology Research Institute of Shanghai Academy of Agricultural Sciences, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Shanghai 201106, China; Key Laboratory for Safety Assessment (Enviornment) of Agricultural Genetically Modified Organisms, Ministry of Agriculture and Rural Affairs, P.R. China
| | - Yong-Sheng Tian
- Biotechnology Research Institute of Shanghai Academy of Agricultural Sciences, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Shanghai 201106, China; Key Laboratory for Safety Assessment (Enviornment) of Agricultural Genetically Modified Organisms, Ministry of Agriculture and Rural Affairs, P.R. China.
| | - Ri-He Peng
- Biotechnology Research Institute of Shanghai Academy of Agricultural Sciences, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Shanghai 201106, China; Key Laboratory for Safety Assessment (Enviornment) of Agricultural Genetically Modified Organisms, Ministry of Agriculture and Rural Affairs, P.R. China.
| | - Quan-Hong Yao
- Biotechnology Research Institute of Shanghai Academy of Agricultural Sciences, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Shanghai 201106, China; Key Laboratory for Safety Assessment (Enviornment) of Agricultural Genetically Modified Organisms, Ministry of Agriculture and Rural Affairs, P.R. China.
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9
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Hou R, Zhang J, Fu Q, Li T, Gao S, Wang R, Zhao S, Zhu B. The boom era of emerging contaminants: A review of remediating agricultural soils by biochar. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 931:172899. [PMID: 38692328 DOI: 10.1016/j.scitotenv.2024.172899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2023] [Revised: 12/03/2023] [Accepted: 04/28/2024] [Indexed: 05/03/2024]
Abstract
Emerging contaminants (ECs) are widely sourced persistent pollutants that pose a significant threat to the environment and human health. Their footprint spans global ecosystems, making their remediation highly challenging. In recent years, a significant amount of literature has focused on the use of biochar for remediation of heavy metals and organic pollutants in soil and water environments. However, the use of biochar for the remediation of ECs in agricultural soils has not received as much attention, and as a result, there are limited reviews available on this topic. Thus, this review aims to provide an overview of the primary types, sources, and hazards of ECs in farmland, as well as the structure, functions, and preparation types of biochar. Furthermore, this paper emphasizes the importance and prospects of three remediation strategies for ECs in cropland: (i) employing activated, modified, and composite biochar for remediation, which exhibit superior pollutant removal compared to pure biochar; (ii) exploring the potential synergistic efficiency between biochar and compost, enhancing their effectiveness in soil improvement and pollution remediation; (iii) utilizing biochar as a shelter and nutrient source for microorganisms in biochar-mediated microbial remediation, positively impacting soil properties and microbial community structure. Given the increasing global prevalence of ECs, the remediation strategies provided in this paper aim to serve as a valuable reference for future remediation of ECs-contaminated agricultural lands.
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Affiliation(s)
- Renjie Hou
- School of Water Conservancy and Civil Engineering, Northeast Agricultural University, Harbin, Heilongjiang 150030, China; Key Laboratory of Effective Utilization of Agricultural Water Resources of Ministry of Agriculture, Northeast Agricultural University, Harbin, Heilongjiang 150030, China
| | - Jian Zhang
- School of Water Conservancy and Civil Engineering, Northeast Agricultural University, Harbin, Heilongjiang 150030, China; Key Laboratory of Effective Utilization of Agricultural Water Resources of Ministry of Agriculture, Northeast Agricultural University, Harbin, Heilongjiang 150030, China
| | - Qiang Fu
- School of Water Conservancy and Civil Engineering, Northeast Agricultural University, Harbin, Heilongjiang 150030, China; Key Laboratory of Effective Utilization of Agricultural Water Resources of Ministry of Agriculture, Northeast Agricultural University, Harbin, Heilongjiang 150030, China.
| | - Tianxiao Li
- School of Water Conservancy and Civil Engineering, Northeast Agricultural University, Harbin, Heilongjiang 150030, China; Key Laboratory of Effective Utilization of Agricultural Water Resources of Ministry of Agriculture, Northeast Agricultural University, Harbin, Heilongjiang 150030, China.
| | - Shijun Gao
- Heilongjiang Water Conservancy Research Institute, Harbin, Heilongjiang 150080, China
| | - Rui Wang
- Heilongjiang Province Five building Construction Engineering Co., LTD, Harbin, Heilongjiang 150090, China
| | - Shan Zhao
- College of Ocean Science and Engineering, Shanghai Maritime University, Shanghai 201306, China
| | - Bingyu Zhu
- School of Water Conservancy and Civil Engineering, Northeast Agricultural University, Harbin, Heilongjiang 150030, China; Key Laboratory of Effective Utilization of Agricultural Water Resources of Ministry of Agriculture, Northeast Agricultural University, Harbin, Heilongjiang 150030, China
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10
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Wu C, Wu Y, Li F, Ding X, Yi S, Hang S, Ge F, Zhang M. Reducing the accumulation of cadmium and phenanthrene in rice by optimizing planting spacing: Role of low-abundance but core rhizobacterial communities. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 926:171856. [PMID: 38522531 DOI: 10.1016/j.scitotenv.2024.171856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 03/18/2024] [Accepted: 03/19/2024] [Indexed: 03/26/2024]
Abstract
Optimizing planting spacing is a common agricultural practice for enhancing rice growth. However, its effect on the accumulation of cadmium (Cd) and phenanthrene (Phen) in soil-rice systems and the response mechanisms of rhizobacteria to co-contaminants remain unclear. This study found that reducing rice planting spacing to 5 cm and 10 cm significantly decreased the bioavailability of Cd (by 7.9 %-29.5 %) and Phen (by 12.9 %-47.6 %) in the rhizosphere soil by converting them into insoluble forms. The increased accumulation of Cd and Phen in roots and iron plaques (IPs) ultimately led to decreased Cd (by 32.2 %-39.9 %) and Phen (by 4.2 %-17.3 %) levels in brown rice, and also significantly affected the composition of rhizobacteria. Specifically, reducing rice planting spacing increased the abundance of low-abundance but core rhizobacteria in the rhizosphere soil and IPs, including Bacillus, Clostridium, Sphingomonas, Paenibacillus, and Leifsonia. These low-abundance but core rhizobacteria exhibited enhanced metabolic capacities for Cd and Phen, accompanied by increased abundances of Cd-resistance genes (e.g., czcC and czcB) and Phen-degradation genes (e.g., pahE4 and pahE1) within the rhizosphere soil and IPs. Reduced planting spacing had no noticeable impact on rice biomass. These findings provide new insights into the role of low-abundance but core rhizobacterial communities in Cd and Phen uptake by rice, highlighting the potential of reduced planting spacing as an eco-friendly strategy for ensuring the safety of rice production on contaminated paddy soils.
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Affiliation(s)
- Chen Wu
- College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China; Hunan Provincial University Key Laboratory for Environmental and Ecological Health, Xiangtan 411105, China; Hunan Provincial University Key Laboratory for Environmental Behavior and Control Principle of New Pollutants, Xiangtan 411105, China; The Experimental Teaching Center in College of Environment and Resources, Xiangtan University, Xiangtan 411105, China
| | - Yujun Wu
- College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China; Hunan Provincial University Key Laboratory for Environmental and Ecological Health, Xiangtan 411105, China; Hunan Provincial University Key Laboratory for Environmental Behavior and Control Principle of New Pollutants, Xiangtan 411105, China; The Experimental Teaching Center in College of Environment and Resources, Xiangtan University, Xiangtan 411105, China
| | - Feng Li
- College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China; Hunan Provincial University Key Laboratory for Environmental and Ecological Health, Xiangtan 411105, China; Hunan Provincial University Key Laboratory for Environmental Behavior and Control Principle of New Pollutants, Xiangtan 411105, China; The Experimental Teaching Center in College of Environment and Resources, Xiangtan University, Xiangtan 411105, China.
| | - Xiangxi Ding
- College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China; Hunan Provincial University Key Laboratory for Environmental and Ecological Health, Xiangtan 411105, China; Hunan Provincial University Key Laboratory for Environmental Behavior and Control Principle of New Pollutants, Xiangtan 411105, China; The Experimental Teaching Center in College of Environment and Resources, Xiangtan University, Xiangtan 411105, China
| | - Shengwei Yi
- College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China; Hunan Provincial University Key Laboratory for Environmental and Ecological Health, Xiangtan 411105, China; Hunan Provincial University Key Laboratory for Environmental Behavior and Control Principle of New Pollutants, Xiangtan 411105, China; The Experimental Teaching Center in College of Environment and Resources, Xiangtan University, Xiangtan 411105, China
| | - Sicheng Hang
- College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China; Hunan Provincial University Key Laboratory for Environmental and Ecological Health, Xiangtan 411105, China; Hunan Provincial University Key Laboratory for Environmental Behavior and Control Principle of New Pollutants, Xiangtan 411105, China; The Experimental Teaching Center in College of Environment and Resources, Xiangtan University, Xiangtan 411105, China
| | - Fei Ge
- College of Environment and Resources, Xiangtan University, Xiangtan, 411105, China; Hunan Provincial University Key Laboratory for Environmental and Ecological Health, Xiangtan 411105, China; Hunan Provincial University Key Laboratory for Environmental Behavior and Control Principle of New Pollutants, Xiangtan 411105, China; The Experimental Teaching Center in College of Environment and Resources, Xiangtan University, Xiangtan 411105, China
| | - Ming Zhang
- Department of Environmental Engineering, China Jiliang University, Hangzhou 310018, China
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11
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Agrawal K, Ruhil T, Gupta VK, Verma P. Microbial assisted multifaceted amelioration processes of heavy-metal remediation: a clean perspective toward sustainable and greener future. Crit Rev Biotechnol 2024; 44:429-447. [PMID: 36851851 DOI: 10.1080/07388551.2023.2170862] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Revised: 12/18/2022] [Accepted: 01/03/2023] [Indexed: 03/01/2023]
Abstract
Rapidly increasing heavy metal waste has adversely affected the environment and the Earth's health. The lack of appropriate remediation technologies has worsened the issue globally, especially in developing countries. Heavy-metals contaminants have severely impacted the environment and led to devastating conditions owing to their abundance and reactivity. As they are nondegradable, the potential risk increases even at a low concentration. However, heavy-metal remediation has increased with the up-gradation of technologies and integration of new approaches. Also, of all the treatment methodologies, microbial-assisted multifaceted approach for ameliorating heavy metals is a promising strategy for propagating the idea of a green and sustainable environment with minimal waste aggregation. Microbial remediation combined with different biotechniques could aid in unraveling new methods for eradicating heavy metals. Thus, the present review focuses on various microbial remediation approaches and their affecting factors, enabling recapitulation of the interplay between heavy-metals ions and microorganisms. Additionally, heavy-metals remediation mechanisms adapted by microorganisms, the role of genetically modified (GM) microorganisms, life cycle assessment (LCA), techno-economic assessment (TEA) limitations, and prospects of microbial-assisted amelioration of heavy-metals have been elaborated in the current review with focus toward "sustainable and greener future."
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Affiliation(s)
- Komal Agrawal
- Bioprocess and Bioenergy Laboratory, Department of Microbiology, Central University of Rajasthan, Ajmer, India
- Department of Microbiology, School of Bio Engineering and Biosciences, Lovely Professional University, Phagwara, India
| | - Tannu Ruhil
- Bioprocess and Bioenergy Laboratory, Department of Microbiology, Central University of Rajasthan, Ajmer, India
| | - Vijai Kumar Gupta
- Center for Safe and Improved Food, SRUC, Edinburgh, UK
- Biorefining and Advanced Materials Research Center, SRUC, Edinburgh, UK
| | - Pradeep Verma
- Bioprocess and Bioenergy Laboratory, Department of Microbiology, Central University of Rajasthan, Ajmer, India
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12
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Kou B, Yuan Y, Zhu X, Ke Y, Wang H, Yu T, Tan W. Effect of soil organic matter-mediated electron transfer on heavy metal remediation: Current status and perspectives. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 917:170451. [PMID: 38296063 DOI: 10.1016/j.scitotenv.2024.170451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Revised: 01/18/2024] [Accepted: 01/24/2024] [Indexed: 02/05/2024]
Abstract
Soil contamination by heavy metals poses major risks to human health and the environment. Given the current status of heavy metal pollution, many remediation techniques have been tested at laboratory and contaminated sites. The effects of soil organic matter-mediated electron transfer on heavy metal remediation have not been adequately studied, and the key mechanisms underlying this process have not yet been elucidated. In this review, microbial extracellular electron transfer pathways, organic matter electron transfer for heavy metal reduction, and the factors affecting these processes were discussed to enhance our understanding of heavy metal pollution. It was found that microbial extracellular electrons delivered by electron shuttles have the longest distance among the three electron transfer pathways, and the application of exogenous electron shuttles lays the foundation for efficient and persistent remediation of heavy metals. The organic matter-mediated electron transfer process, wherein organic matter acts as an electron shuttle, promotes the conversion of high valence state metal ions, such as Cr(VI), Hg(II), and U(VI), into less toxic and morphologically stable forms, which inhibits their mobility and bioavailability. Soil type, organic matter structural and content, heavy metal concentrations, and environmental factors (e.g., pH, redox potential, oxygen conditions, and temperature) all influence organic matter-mediated electron transfer processes and bioremediation of heavy metals. Organic matter can more effectively mediate electron transfer for heavy metal remediation under anaerobic conditions, as well as when the heavy metal content is low and the redox potential is suitable under fluvo-aquic/paddy soil conditions. Organic matter with high aromaticity, quinone groups, and phenol groups has a stronger electron transfer ability. This review provides new insights into the control and management of soil contamination and heavy metal remediation technologies.
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Affiliation(s)
- Bing Kou
- College of Urban and Environmental Science, Northwest University, Xi'an 710127, China; State Environmental Protection Key Laboratory of Simulation and Control of Groundwater Pollution, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Ying Yuan
- State Environmental Protection Key Laboratory of Simulation and Control of Groundwater Pollution, Chinese Research Academy of Environmental Sciences, Beijing 100012, China.
| | - Xiaoli Zhu
- College of Urban and Environmental Science, Northwest University, Xi'an 710127, China.
| | - Yuxin Ke
- College of Urban and Environmental Science, Northwest University, Xi'an 710127, China
| | - Hui Wang
- State Environmental Protection Key Laboratory of Simulation and Control of Groundwater Pollution, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Tingqiao Yu
- International Education College, Beijing Vocational College of Agriculture, Beijing 102442, China
| | - Wenbing Tan
- State Environmental Protection Key Laboratory of Simulation and Control of Groundwater Pollution, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
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13
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Su Y, Zhu M, Zhang H, Chen H, Wang J, Zhao C, Liu Q, Gu Y. Application of bacterial agent YH for remediation of pyrene-heavy metal co-pollution system: Efficiency, mechanism, and microbial response. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 351:119841. [PMID: 38109828 DOI: 10.1016/j.jenvman.2023.119841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 11/22/2023] [Accepted: 12/03/2023] [Indexed: 12/20/2023]
Abstract
The combination of organic and heavy metal pollutants can be effectively and sustainably remediated using bioremediation, which is acknowledged as an environmentally friendly and economical approach. In this study, bacterial agent YH was used as the research object to explore its potential and mechanism for bioremediation of pyrene-heavy metal co-contaminated system. Under the optimal conditions (pH 7.0, temperature 35°C), it was observed that pyrene (PYR), Pb(II), and Cu(II) were effectively eliminated in liquid medium, with removal rates of 43.46%, 97.73% and 81.60%, respectively. The microscopic characterization (SEM/TEM-EDS, XPS, XRD and FTIR) results showed that Pb(II) and Cu(II) were eliminated by extracellular adsorption and intracellular accumulation of YH. Furthermore, the presence of resistance gene clusters (cop, pco, cus and pbr) plays an important role in the detoxification of Pb(II) and Cu(II) by strains YH. The degradation rate of PYR reached 72.51% in composite contaminated soil, which was 4.33 times that of the control group, suggesting that YH promoted the dissipation of pyrene. Simultaneously, the content of Cu, Pb and Cr in the form of F4 (residual state) increased by 25.17%, 6.34% and 36.88%, respectively, indicating a decrease in the bioavailability of heavy metals. Furthermore, YH reorganized the microbial community structure and enriched the abundance of hydrocarbon degradation pathways and enzyme-related functions. This study would provide an effective microbial agent and new insights for the remediation of soil and water contaminated with organic pollutants and heavy metals.
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Affiliation(s)
- Yuhua Su
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Mingjun Zhu
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Hang Zhang
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Hongxu Chen
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Jiguo Wang
- Toroivd Technology Company Limited, Shanghai, 200439, China
| | - Chaocheng Zhao
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China; State Key Laboratory of Petroleum Pollution Control, Qingdao, 266580, China
| | - Qiyou Liu
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China; State Key Laboratory of Petroleum Pollution Control, Qingdao, 266580, China.
| | - Yingying Gu
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China; State Key Laboratory of Petroleum Pollution Control, Qingdao, 266580, China
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14
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Banerjee S, Gupta N, Pramanik K, Gope M, GhoshThakur R, Karmakar A, Gogoi N, Hoque RR, Mandal NC, Balachandran S. Microbes and microbial strategies in carcinogenic polycyclic aromatic hydrocarbons remediation: a systematic review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:1811-1840. [PMID: 38063960 DOI: 10.1007/s11356-023-31140-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Accepted: 11/16/2023] [Indexed: 01/18/2024]
Abstract
Degradation, detoxification, or removal of the omnipresent polycyclic aromatic hydrocarbons (PAHs) from the ecosphere as well as their prevention from entering into food chain has never appeared simple. In this context, cost-effective, eco-friendly, and sustainable solutions like microbe-mediated strategies have been adopted worldwide. With this connection, measures have been taken by multifarious modes of microbial remedial strategies, i.e., enzymatic degradation, biofilm and biosurfactant production, application of biochar-immobilized microbes, lactic acid bacteria, rhizospheric-phyllospheric-endophytic microorganisms, genetically engineered microorganisms, and bioelectrochemical techniques like microbial fuel cell. In this review, a nine-way directional approach which is based on the microbial resources reported over the last couple of decades has been described. Fungi were found to be the most dominant taxa among the CPAH-degrading microbial community constituting 52.2%, while bacteria, algae, and yeasts occupied 37.4%, 9.1%, and 1.3%, respectively. In addition to these, category-wise CPAH degrading efficiencies of each microbial taxon, consortium-based applications, CPAH degradation-related molecular tools, and factors affecting CPAH degradation are the other important aspects of this review in light of their appropriate selection and application in the PAH-contaminated environment for better human-health management in order to achieve a sustainable ecosystem.
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Affiliation(s)
- Sandipan Banerjee
- Mycology and Plant Pathology Laboratory, Department of Botany, Visva-Bharati, Santiniketan, 731235, West Bengal, India
| | - Nitu Gupta
- Department of Environmental Science, Tezpur University, Napaam, Tezpur, Assam, 784028, India
| | - Krishnendu Pramanik
- Microbiology and Microbial Bioinformatics Laboratory, Department of Botany, Cooch Behar Panchanan Barma University, Panchanan Nagar, Vivekananda Street, Cooch Behar, 736101, West Bengal, India
| | - Manash Gope
- Department of Environmental Science, The University of Burdwan, Golapbag, 713104, West Bengal, India
| | - Richik GhoshThakur
- Department of Environmental Studies, Visva-Bharati, Santiniketan, 731235, West Bengal, India
| | - Animesh Karmakar
- Department of Chemistry, Visva-Bharati, Santiniketan, 731235, West Bengal, India
| | - Nayanmoni Gogoi
- Department of Environmental Science, Tezpur University, Napaam, Tezpur, Assam, 784028, India
| | - Raza Rafiqul Hoque
- Department of Environmental Science, Tezpur University, Napaam, Tezpur, Assam, 784028, India
| | - Narayan Chandra Mandal
- Mycology and Plant Pathology Laboratory, Department of Botany, Visva-Bharati, Santiniketan, 731235, West Bengal, India
| | - Srinivasan Balachandran
- Department of Environmental Studies, Visva-Bharati, Santiniketan, 731235, West Bengal, India.
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15
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Wu J, Lv J, Zhao L, Zhao R, Gao T, Xu Q, Liu D, Yu Q, Ma F. Exploring the role of microbial proteins in controlling environmental pollutants based on molecular simulation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 905:167028. [PMID: 37704131 DOI: 10.1016/j.scitotenv.2023.167028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2023] [Revised: 09/03/2023] [Accepted: 09/10/2023] [Indexed: 09/15/2023]
Abstract
Molecular simulation has been widely used to study microbial proteins' structural composition and dynamic properties, such as volatility, flexibility, and stability at the microscopic scale. Herein, this review describes the key elements of molecular docking and molecular dynamics (MD) simulations in molecular simulation; reviews the techniques combined with molecular simulation, such as crystallography, spectroscopy, molecular biology, and machine learning, to validate simulation results and bridge information gaps in the structure, microenvironmental changes, expression mechanisms, and intensity quantification; illustrates the application of molecular simulation, in characterizing the molecular mechanisms of interaction of microbial proteins with four different types of contaminants, namely heavy metals (HMs), pesticides, dyes and emerging contaminants (ECs). Finally, the review outlines the important role of molecular simulations in the study of microbial proteins for controlling environmental contamination and provides ideas for the application of molecular simulation in screening microbial proteins and incorporating targeted mutagenesis to obtain more effective contaminant control proteins.
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Affiliation(s)
- Jieting Wu
- School of Environmental Science, Liaoning University, Shenyang 110036, China
| | - Jin Lv
- School of Environmental Science, Liaoning University, Shenyang 110036, China
| | - Lei Zhao
- State Key Laboratory of Urban Water Resources & Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Ruofan Zhao
- School of Environment, Beijing Normal University, Beijing 100875, China
| | - Tian Gao
- Key Laboratory of Integrated Regulation and Resource Development of Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Xikang Road #1, Nanjing 210098, China
| | - Qi Xu
- PetroChina Fushun Petrochemical Company, Fushun 113000, China
| | - Dongbo Liu
- School of Environmental Science, Liaoning University, Shenyang 110036, China
| | - Qiqi Yu
- School of Environmental Science, Liaoning University, Shenyang 110036, China
| | - Fang Ma
- State Key Laboratory of Urban Water Resources & Environment, Harbin Institute of Technology, Harbin 150090, China.
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16
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Fooladi S, Rabiee N, Iravani S. Genetically engineered bacteria: a new frontier in targeted drug delivery. J Mater Chem B 2023; 11:10072-10087. [PMID: 37873584 DOI: 10.1039/d3tb01805a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2023]
Abstract
Genetically engineered bacteria (GEB) have shown significant promise to revolutionize modern medicine. These engineered bacteria with unique properties such as enhanced targeting, versatility, biofilm disruption, reduced drug resistance, self-amplification capabilities, and biodegradability represent a highly promising approach for targeted drug delivery and cancer theranostics. This innovative approach involves modifying bacterial strains to function as drug carriers, capable of delivering therapeutic agents directly to specific cells or tissues. Unlike synthetic drug delivery systems, GEB are inherently biodegradable and can be naturally eliminated from the body, reducing potential long-term side effects or complications associated with residual foreign constituents. However, several pivotal challenges such as safety and controllability need to be addressed. Researchers have explored novel tactics to improve their capabilities and overcome existing challenges, including synthetic biology tools (e.g., clustered regularly interspaced short palindromic repeats (CRISPR) and bioinformatics-driven design), microbiome engineering, combination therapies, immune system interaction, and biocontainment strategies. Because of the remarkable advantages and tangible progress in this field, GEB may emerge as vital tools in personalized medicine, providing precise and controlled drug delivery for various diseases (especially cancer). In this context, future directions include the integration of nanotechnology with GEB, the focus on microbiota-targeted therapies, the incorporation of programmable behaviors, the enhancement in immunotherapy treatments, and the discovery of non-medical applications. In this way, careful ethical considerations and regulatory frameworks are necessary for developing GEB-based systems for targeted drug delivery. By addressing safety concerns, ensuring informed consent, promoting equitable access, understanding long-term effects, mitigating dual-use risks, and fostering public engagement, these engineered bacteria can be employed as promising delivery vehicles in bio- and nanomedicine. In this review, recent advances related to the application of GEB in targeted drug delivery and cancer therapy are discussed, covering crucial challenging issues and future perspectives.
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Affiliation(s)
- Saba Fooladi
- Yale Cardiovascular Research Center, Section of Cardiovascular Medicine, Department of Internal Medicine, Yale School of Medicine, New Haven, CT 06511, USA
| | - Navid Rabiee
- Centre for Molecular Medicine and Innovative Therapeutics, Murdoch University, Perth, WA 6150, Australia.
- School of Engineering, Macquarie University, Sydney, New South Wales, 2109, Australia
| | - Siavash Iravani
- Independent Researcher, W Nazar ST, Boostan Ave, Isfahan, Iran.
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17
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Zhao Z, Sun Y, Wang H, Yu Q. Regulation of cadmium-induced biofilm formation by artificial polysaccharide-binding proteins for enhanced phytoremediation. CHEMOSPHERE 2023; 342:140156. [PMID: 37714481 DOI: 10.1016/j.chemosphere.2023.140156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Revised: 08/28/2023] [Accepted: 09/11/2023] [Indexed: 09/17/2023]
Abstract
Phytoremediation is an economic way to attenuate soil heavy metal pollution, but is frequently limited by its low pollutant-removing efficiency. Recently, we revealed the close relation between polysaccharide-based biofilm formation and cadmium removal. In this study, for improving the phytoremediation efficiency, an artificial polysaccharide-binding protein was designed by synthetic biology techniques to regulate biofilm formation. The artificial protein Syn contained two polysaccharide-binding domains from the Ruminococcus flavefaciens CttA and the Clostridium cellulolyticum CipC, preferentially binding polysaccharides exposed on both cadmium-treated bacteria and plant roots. Under cadmium stress, Syn remarkably promoted bacterial polysaccharide production from 99 mg/L to 237 mg/L, leading to 1.23-fold higher biofilm biomass. During treatment of the remediation plants with exogenous cadmium-capturing bacteria, Syn improved root biofilm formation, with the root surface polysaccharide contents increasing by 79%, and the Log10 CFU/g root increasing from 7.01 to 7.80. Meanwhile, Syn remodeled the rhizosphere microbiome, especially increasing the abundance of the bacterial groups involved in biofilm formation and stress tolerance, e.g., Pseudomonas, Enterobacter, etc. Consequently, Syn promoted plant cadmium adsorption, with the cadmium-removing efficiency increasing from 17.2% to 33.8%. This study sheds light on synthetic biology-based regulation of biofilm formation for enhanced phytoremediation.
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Affiliation(s)
- Zirun Zhao
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, Department of Microbiology, College of Life Sciences, Nankai University, Tianjin, 300071, PR China.
| | - Ying Sun
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, Department of Microbiology, College of Life Sciences, Nankai University, Tianjin, 300071, PR China
| | - Hairong Wang
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, Department of Microbiology, College of Life Sciences, Nankai University, Tianjin, 300071, PR China
| | - Qilin Yu
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, Department of Microbiology, College of Life Sciences, Nankai University, Tianjin, 300071, PR China.
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18
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Zheng X, Zhong Z, Xu Y, Lin X, Cao Z, Yan Q. Response of heavy-metal and antibiotic resistance genes and their related microbe in rice paddy irrigated with treated municipal wastewaters. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 896:165249. [PMID: 37406708 DOI: 10.1016/j.scitotenv.2023.165249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Revised: 06/27/2023] [Accepted: 06/29/2023] [Indexed: 07/07/2023]
Abstract
Paddy irrigation with secondary effluents from municipal wastewater treatment plants (MWTPs) is a well-established practice to alleviate water scarcity. However, the reuse might lead to more complicated contamination caused by interactions between residual antibiotics in effluents and heavy metals in paddy soil. To date, no information is available for the potential effects of dual stress of heavy metals and antibiotics on heavy-metal resistance genes (MRGs) and antibiotic resistance genes (ARGs). Here, this study investigated the response of heavy metal and antibiotic resistance genes, and related microorganisms to the dual threat of antibiotics and heavy metals under the long-term MWTP effluent irrigation for rice paddy using metagenome. The results showed that there was not a negative effect on rice consumption if MWTP effluent was used to irrigate rice for a long time. The concentration of antibiotics could reshape the ARGs and MRG profiles in rice paddy soil. The findings revealed the co-occurrence of ARGs and MRGs in rice paddy soils, thus highlighting the need for simultaneous elimination of antibiotics and heavy metals to effectively reduce ARGs and MRGs. Acn and sul1 genes encoding Iron and sulfonamides resistance mechanisms are the most abundant MRG and ARG, respectively. Network analysis revealed the possibility that IntI1 plays a role in the co-transmission of MRG and ARG to host microbes, and that Proteobacteria are the most dominant hosts for MRG, ARG, and integrons. The presence of antibiotics in irrigated MWTP effluents has been found to stimulate the proliferation of heavy metal and antibiotic resistances by altering soil microbial communities. This study will enhance our comprehension of the co-selection between ARGs and MRGs, as well as reveal the concealed environmental impacts of combined pollution. The obtained results have important implications for food safety and human health in rice.
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Affiliation(s)
- Xiaolong Zheng
- China National Rice Research Institute, Hangzhou 310006, PR China; Rice Product Quality Inspection and Supervision Testing Center of Ministry of Agriculture and Rural Affairs, China National Rice Research Institute, Hangzhou 310006, PR China
| | - Zhengzheng Zhong
- China National Rice Research Institute, Hangzhou 310006, PR China
| | - Yuan Xu
- China National Rice Research Institute, Hangzhou 310006, PR China; Rice Product Quality Inspection and Supervision Testing Center of Ministry of Agriculture and Rural Affairs, China National Rice Research Institute, Hangzhou 310006, PR China
| | - Xiaoyan Lin
- China National Rice Research Institute, Hangzhou 310006, PR China; Rice Product Quality Inspection and Supervision Testing Center of Ministry of Agriculture and Rural Affairs, China National Rice Research Institute, Hangzhou 310006, PR China
| | - Zhaoyun Cao
- China National Rice Research Institute, Hangzhou 310006, PR China; Rice Product Quality Inspection and Supervision Testing Center of Ministry of Agriculture and Rural Affairs, China National Rice Research Institute, Hangzhou 310006, PR China
| | - Qing Yan
- China National Rice Research Institute, Hangzhou 310006, PR China; Rice Product Quality Inspection and Supervision Testing Center of Ministry of Agriculture and Rural Affairs, China National Rice Research Institute, Hangzhou 310006, PR China.
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19
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Wu C, Yang Y, Zhong Y, Guan Y, Chen Q, Du W, Liu G. Biological calcium carbonate enhanced the ability of biochar to passivate antimony and lead in soil. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2023; 25:1365-1373. [PMID: 37405368 DOI: 10.1039/d3em00117b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/06/2023]
Abstract
The mechanism of immobilization of heavy metals in the soil using biochar has been studied extensively. However, the decomposition of biochar by biological and abiotic factors can reactivate the immobilized heavy metals in soil. Previous research showed that the addition of biological calcium carbonate (bio-CaCO3) can significantly increase the stability of biochar. However, the influence of bio-CaCO3 on the ability of biochar to immobilize heavy metals remains unclear. Therefore, this study evaluated the effect of bio-CaCO3 on the use of biochar to immobilize the cationic heavy metal lead and the anionic heavy metal antimony. The addition of bio-CaCO3 not only significantly improved the passivation ability of Pb and Sb but also reduced their migration in the soil. Mechanistic studies have shown that the reasons for the enhanced ability of biochar to immobilize heavy metals can be summarized in three aspects. First, the introduced inorganic component CaCO3 can precipitate and exchange ions with lead and antimony. Second, the N element in the organic component of bio-CaCO3 underwent polycondensation with the organic carbon in biochar to form pyridine N and pyrrole N structures, which can form a strong complex with lead and antimony. Pyridine N complexes more strongly than pyrrole N. Third, bio-CaCO3 increased the degree of aromatization and the surface π-electron density of biochar, which enhanced the ability of biochar to adsorb heavy metals. This study will provide a new concept for the application of biochar as an amendment to remediate heavy metals in the soil.
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Affiliation(s)
- Can Wu
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, College of Ecology and Environment, Chengdu University of Technology, Chengdu 610059, China.
- State Environmental Protection Key Laboratory of Synergetic Control and Joint Remediation for Soil & Water Pollution, Chengdu University of Technology, Chengdu 610059, China
| | - Yi Yang
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, College of Ecology and Environment, Chengdu University of Technology, Chengdu 610059, China.
| | - Yaping Zhong
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, College of Ecology and Environment, Chengdu University of Technology, Chengdu 610059, China.
| | - Yan Guan
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, College of Ecology and Environment, Chengdu University of Technology, Chengdu 610059, China.
| | - Qingqing Chen
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, College of Ecology and Environment, Chengdu University of Technology, Chengdu 610059, China.
| | - Wenping Du
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, College of Ecology and Environment, Chengdu University of Technology, Chengdu 610059, China.
| | - Guo Liu
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, College of Ecology and Environment, Chengdu University of Technology, Chengdu 610059, China.
- State Environmental Protection Key Laboratory of Synergetic Control and Joint Remediation for Soil & Water Pollution, Chengdu University of Technology, Chengdu 610059, China
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20
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Abd Elnabi MK, Elkaliny NE, Elyazied MM, Azab SH, Elkhalifa SA, Elmasry S, Mouhamed MS, Shalamesh EM, Alhorieny NA, Abd Elaty AE, Elgendy IM, Etman AE, Saad KE, Tsigkou K, Ali SS, Kornaros M, Mahmoud YAG. Toxicity of Heavy Metals and Recent Advances in Their Removal: A Review. TOXICS 2023; 11:580. [PMID: 37505546 PMCID: PMC10384455 DOI: 10.3390/toxics11070580] [Citation(s) in RCA: 37] [Impact Index Per Article: 37.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2023] [Revised: 06/14/2023] [Accepted: 06/24/2023] [Indexed: 07/29/2023]
Abstract
Natural and anthropogenic sources of metals in the ecosystem are perpetually increasing; consequently, heavy metal (HM) accumulation has become a major environmental concern. Human exposure to HMs has increased dramatically due to the industrial activities of the 20th century. Mercury, arsenic lead, chrome, and cadmium have been the most prevalent HMs that have caused human toxicity. Poisonings can be acute or chronic following exposure via water, air, or food. The bioaccumulation of these HMs results in a variety of toxic effects on various tissues and organs. Comparing the mechanisms of action reveals that these metals induce toxicity via similar pathways, including the production of reactive oxygen species, the inactivation of enzymes, and oxidative stress. The conventional techniques employed for the elimination of HMs are deemed inadequate when the HM concentration is less than 100 mg/L. In addition, these methods exhibit certain limitations, including the production of secondary pollutants, a high demand for energy and chemicals, and reduced cost-effectiveness. As a result, the employment of microbial bioremediation for the purpose of HM detoxification has emerged as a viable solution, given that microorganisms, including fungi and bacteria, exhibit superior biosorption and bio-accumulation capabilities. This review deals with HM uptake and toxicity mechanisms associated with HMs, and will increase our knowledge on their toxic effects on the body organs, leading to better management of metal poisoning. This review aims to enhance comprehension and offer sources for the judicious selection of microbial remediation technology for the detoxification of HMs. Microbial-based solutions that are sustainable could potentially offer crucial and cost-effective methods for reducing the toxicity of HMs.
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Affiliation(s)
- Manar K. Abd Elnabi
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt; (M.K.A.E.); (N.E.E.); (M.M.E.); (S.H.A.); (S.A.E.); (M.S.M.); (E.M.S.); (N.A.A.); (A.E.A.E.); (I.M.E.); (A.E.E.); (K.E.S.); (Y.A.-G.M.)
- Biotechnology Program, Institute of Basic and Applied Science (BAS), Egypt-Japan University of Science and Technology, New Borg El-Arab City 21934, Egypt
| | - Nehal E. Elkaliny
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt; (M.K.A.E.); (N.E.E.); (M.M.E.); (S.H.A.); (S.A.E.); (M.S.M.); (E.M.S.); (N.A.A.); (A.E.A.E.); (I.M.E.); (A.E.E.); (K.E.S.); (Y.A.-G.M.)
| | - Maha M. Elyazied
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt; (M.K.A.E.); (N.E.E.); (M.M.E.); (S.H.A.); (S.A.E.); (M.S.M.); (E.M.S.); (N.A.A.); (A.E.A.E.); (I.M.E.); (A.E.E.); (K.E.S.); (Y.A.-G.M.)
| | - Shimaa H. Azab
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt; (M.K.A.E.); (N.E.E.); (M.M.E.); (S.H.A.); (S.A.E.); (M.S.M.); (E.M.S.); (N.A.A.); (A.E.A.E.); (I.M.E.); (A.E.E.); (K.E.S.); (Y.A.-G.M.)
| | - Shawky A. Elkhalifa
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt; (M.K.A.E.); (N.E.E.); (M.M.E.); (S.H.A.); (S.A.E.); (M.S.M.); (E.M.S.); (N.A.A.); (A.E.A.E.); (I.M.E.); (A.E.E.); (K.E.S.); (Y.A.-G.M.)
| | - Sohaila Elmasry
- Microbiology Department, Faculty of science, Damanhour University, Behaira 22514, Egypt;
| | - Moustafa S. Mouhamed
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt; (M.K.A.E.); (N.E.E.); (M.M.E.); (S.H.A.); (S.A.E.); (M.S.M.); (E.M.S.); (N.A.A.); (A.E.A.E.); (I.M.E.); (A.E.E.); (K.E.S.); (Y.A.-G.M.)
| | - Ebrahim M. Shalamesh
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt; (M.K.A.E.); (N.E.E.); (M.M.E.); (S.H.A.); (S.A.E.); (M.S.M.); (E.M.S.); (N.A.A.); (A.E.A.E.); (I.M.E.); (A.E.E.); (K.E.S.); (Y.A.-G.M.)
| | - Naira A. Alhorieny
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt; (M.K.A.E.); (N.E.E.); (M.M.E.); (S.H.A.); (S.A.E.); (M.S.M.); (E.M.S.); (N.A.A.); (A.E.A.E.); (I.M.E.); (A.E.E.); (K.E.S.); (Y.A.-G.M.)
| | - Abeer E. Abd Elaty
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt; (M.K.A.E.); (N.E.E.); (M.M.E.); (S.H.A.); (S.A.E.); (M.S.M.); (E.M.S.); (N.A.A.); (A.E.A.E.); (I.M.E.); (A.E.E.); (K.E.S.); (Y.A.-G.M.)
| | - Ibrahim M. Elgendy
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt; (M.K.A.E.); (N.E.E.); (M.M.E.); (S.H.A.); (S.A.E.); (M.S.M.); (E.M.S.); (N.A.A.); (A.E.A.E.); (I.M.E.); (A.E.E.); (K.E.S.); (Y.A.-G.M.)
| | - Alaa E. Etman
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt; (M.K.A.E.); (N.E.E.); (M.M.E.); (S.H.A.); (S.A.E.); (M.S.M.); (E.M.S.); (N.A.A.); (A.E.A.E.); (I.M.E.); (A.E.E.); (K.E.S.); (Y.A.-G.M.)
| | - Kholod E. Saad
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt; (M.K.A.E.); (N.E.E.); (M.M.E.); (S.H.A.); (S.A.E.); (M.S.M.); (E.M.S.); (N.A.A.); (A.E.A.E.); (I.M.E.); (A.E.E.); (K.E.S.); (Y.A.-G.M.)
| | - Konstantina Tsigkou
- Department of Chemical Engineering, University of Patras, 1 Karatheodori str, 26504 Patras, Greece;
| | - Sameh S. Ali
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt; (M.K.A.E.); (N.E.E.); (M.M.E.); (S.H.A.); (S.A.E.); (M.S.M.); (E.M.S.); (N.A.A.); (A.E.A.E.); (I.M.E.); (A.E.E.); (K.E.S.); (Y.A.-G.M.)
- Biofuels Institute, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Michael Kornaros
- Department of Chemical Engineering, University of Patras, 1 Karatheodori str, 26504 Patras, Greece;
| | - Yehia A.-G. Mahmoud
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt; (M.K.A.E.); (N.E.E.); (M.M.E.); (S.H.A.); (S.A.E.); (M.S.M.); (E.M.S.); (N.A.A.); (A.E.A.E.); (I.M.E.); (A.E.E.); (K.E.S.); (Y.A.-G.M.)
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21
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Thacharodi A, Hassan S, Singh T, Mandal R, Chinnadurai J, Khan HA, Hussain MA, Brindhadevi K, Pugazhendhi A. Bioremediation of polycyclic aromatic hydrocarbons: An updated microbiological review. CHEMOSPHERE 2023; 328:138498. [PMID: 36996919 DOI: 10.1016/j.chemosphere.2023.138498] [Citation(s) in RCA: 17] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2023] [Revised: 03/08/2023] [Accepted: 03/21/2023] [Indexed: 06/19/2023]
Abstract
A class of organic priority pollutants known as PAHs is of critical public health and environmental concern due to its carcinogenic properties as well as its genotoxic, mutagenic, and cytotoxic properties. Research to eliminate PAHs from the environment has increased significantly due to awareness about their negative effects on the environment and human health. Various environmental factors, including nutrients, microorganisms present and their abundance, and the nature and chemical properties of the PAH affect the biodegradation of PAHs. A large spectrum of bacteria, fungi, and algae have ability to degrade PAHs with the biodegradation capacity of bacteria and fungi receiving the most attention. A considerable amount of research has been conducted in the last few decades on analyzing microbial communities for their genomic organization, enzymatic and biochemical properties capable of degrading PAH. While it is true that PAH degrading microorganisms offer potential for recovering damaged ecosystems in a cost-efficient way, new advances are needed to make these microbes more robust and successful at eliminating toxic chemicals. By optimizing some factors like adsorption, bioavailability and mass transfer of PAHs, microorganisms in their natural habitat could be greatly improved to biodegrade PAHs. This review aims to comprehensively discuss the latest findings and address the current wealth of knowledge in the microbial bioremediation of PAHs. Additionally, recent breakthroughs in PAH degradation are discussed in order to facilitate a broader understanding of the bioremediation of PAHs in the environment.
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Affiliation(s)
- Aswin Thacharodi
- Department of Biochemistry, University of Otago, Dunedin, 9054, New Zealand
| | - Saqib Hassan
- Division of Non-Communicable Diseases, Indian Council of Medical Research (ICMR), New Delhi, 110029, India; Department of Microbiology, School of Life Sciences, Pondicherry University, Puducherry, 605014, India
| | - Tripti Singh
- Department of Biotechnology, Jaypee Institute of Information Technology, Noida, Uttar Pradesh, 201309, India
| | - Ramkrishna Mandal
- Department of Chemistry, University of Otago, Dunedin, 9054, New Zealand
| | - Jeganathan Chinnadurai
- Department of Research and Development, Dr. Thacharodi's Laboratories, No. 24, 5th Cross, Thanthaiperiyar Nagar, Ellapillaichavadi, Puducherry, 605005, India
| | - Hilal Ahmad Khan
- Department of Chemistry, Pondicherry University, Puducherry, 605014, India
| | - Mir Ashiq Hussain
- Department of Chemistry, Pondicherry University, Puducherry, 605014, India
| | - Kathirvel Brindhadevi
- Center for Transdisciplinary Research (CFTR), Department of Pharmacology, Saveetha Dental College, Saveetha Institute of Medical and Technical Sciences, Saveetha University, Chennai, India
| | - Arivalagan Pugazhendhi
- School of Engineering, Lebanese American University, Byblos, Lebanon; University Centre for Research & Development, Department of Civil Engineering, Chandigarh University, Mohali,140103, India.
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22
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Meyer L, Guyot S, Chalot M, Capelli N. The potential of microorganisms as biomonitoring and bioremediation tools for mercury-contaminated soils. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 262:115185. [PMID: 37385017 DOI: 10.1016/j.ecoenv.2023.115185] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 06/20/2023] [Accepted: 06/24/2023] [Indexed: 07/01/2023]
Abstract
Mercury (Hg) pollution is a global issue due to the high toxicity and wide dispersion of Hg around the world. Whether due to anthropogenic activities or natural processes, Hg emissions are steadily increasing, with very high levels in some regions, directly threatening human and ecosystem health. However, bacteria and fungi have evolved and adapted in response to Hg-induced stress and have developed tolerance mechanisms, notably based on the mer operon system that is involved in Hg uptake and biovolatilization via Hg reduction reactions. Other processes, such as bioaccumulation or extracellular sequestration, are involved in Hg resistance, and the study of contaminated soils has allowed the isolation of a number of microorganisms capable of these mechanisms, with strong potential for the implementation of bioremediation approaches. In addition to playing an important role in determining the fate of Hg in the biogeochemical cycle, these microorganisms can indeed be applied to reduce Hg concentrations or at least stabilize Hg for the remediation of polluted soils. Moreover, thanks to the development of biotechnological tools, bioremediation based on Hg-tolerant microorganisms can be optimized. Finally, these microorganisms are relevant candidates for biomonitoring, for example, through the engineering of biosensors, because the detection of Hg is a major issue in preserving the health of living beings.
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Affiliation(s)
- Lorraine Meyer
- Chrono-environnement UMR 6249, Université de Franche-Comté CNRS, F-25000 Besançon, France
| | - Stéphane Guyot
- Université de Bourgogne, Institut Agro, PAM UMR A 02.102, F-21000 Dijon, France
| | - Michel Chalot
- Chrono-environnement UMR 6249, Université de Franche-Comté CNRS, F-25000 Besançon, France; Université de Lorraine, F-54000 Nancy, France
| | - Nicolas Capelli
- Chrono-environnement UMR 6249, Université de Franche-Comté CNRS, F-25000 Besançon, France.
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23
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Udom GJ, Frazzoli C, Ekhator OC, Onyena AP, Bocca B, Orisakwe OE. Pervasiveness, bioaccumulation and subduing environmental health challenges posed by polycyclic aromatic hydrocarbons (PAHs): A systematic review to settle a one health strategy in Niger Delta, Nigeria. ENVIRONMENTAL RESEARCH 2023; 226:115620. [PMID: 36931380 DOI: 10.1016/j.envres.2023.115620] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Revised: 03/01/2023] [Accepted: 03/03/2023] [Indexed: 06/18/2023]
Abstract
The crude oil-rich Niger Delta region of Nigeria is under threat due to anthropogenic activities that include mainly PAH contamination. Following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA), multiple online searches were conducted using several databases (e.g. Cochrane Library, Scopus, Embase, National Library of Medicine, PubMed etc.) between October and November 2022 to collect evidence on pervasiveness, bioaccumulation and health challenges posed by PAH in Nigeria Niger Delta. Included studies were appraised for quality using the Standard for Quality Improvement Reporting Excellence (SQUIRE 2.0) framework and the Joanna Briggs (JB) checklist and retrieved data were analysed using the narrative synthesis method. With the indiscriminate exposure of the local inhabitants to PAH and a lack of public health policies that efficiently prevent exposure-associated adverse health events, there is a need for a collaborative and multi-disciplinary approach, cutting across boundaries of animal, human, and environmental health to undertake risk assessments, develop plans for response and control in an attempt to protect public health. The complex and wide distribution of PAHs within the Niger Delta region would benefit of the One Health strategy. Such systemic approach would help managing the harmful effects of PAHs on ecosystems, from environmental remedial approaches to measures to mitigate exposure-associated risks. One health, including environmental health and food safety, would help risk assessors and risk managers in prioritising actions for the prevention and mitigation of PAHs pollution and its spread and accumulation.
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Affiliation(s)
- Godswill J Udom
- Department of Pharmacology and Toxicology, Federal University Oye-Ekiti, Nigeria
| | - Chiara Frazzoli
- Department of Environment and Health, Istituto Superiore di Sanità, Rome, Italy
| | | | - Amarachi Paschaline Onyena
- Department of Marine Environment and Pollution Control, Nigeria Maritime University Okerenkoko, Warri, Delta State, Nigeria
| | - Beatrice Bocca
- Department of Cardiovascular and Endocrine-Metabolic Diseases and Ageing, Istituto Superiore di Sanità, Rome, Italy
| | - Orish Ebere Orisakwe
- African Centre of Excellence for Public Health and Toxicological Research (ACE-PUTOR), University of Port Harcourt, PMB, 5323, Port Harcourt, Choba, Nigeria; Provictorie Research Institute Port Harcourt, Rivers State, Nigeria.
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24
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Huang C, Guo Z, Peng C, Anaman R, Zhang P. Immobilization of Cd in the soil of mining areas by FeMn oxidizing bacteria. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 873:162306. [PMID: 36801403 DOI: 10.1016/j.scitotenv.2023.162306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Revised: 01/13/2023] [Accepted: 02/13/2023] [Indexed: 06/18/2023]
Abstract
Microorganisms are widely used in large-scale pollution remediation due to their rapid reproduction and low cost. In this study, bioremediation batch experiments and characterization methods were adopted to investigate the mechanism of FeMn oxidizing bacteria on the immobilization of Cd in mining soil. The results showed that the FeMn oxidizing bacteria successfully reduced 36.84 % of the extractable Cd in the soil. The exchangeable forms, carbonate-bound forms, and organic-bound forms of Cd in the soil decreased by 11.4 %, 8 %, and 7.4 %, respectively, due to the addition of FeMn oxidizing bacteria, while FeMn oxides-bound and residual forms of Cd increased by 19.3 % and 7.5 %, as compared to the control treatments. The bacteria promotes the formation of amorphous FeMn precipitates such as lepidocrocite and goethite, which have high adsorption capacity on soil Cd. The oxidation rates of Fe and Mn in the soil treated with the oxidizing bacteria reached 70.32 % and 63.15 %, respectively. Meanwhile, the FeMn oxidizing bacteria increased soil pH and decreased soil organic matter content, further decreasing the extractable Cd in the soil. The FeMn oxidizing bacteria have the potential to be used in large mining areas to assist in the immobilization of heavy metals.
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Affiliation(s)
- Chiyue Huang
- Institute of Environmental Engineering, School of Metallurgy and Environment, Central South University, Changsha 410083, China
| | - Zhaohui Guo
- Institute of Environmental Engineering, School of Metallurgy and Environment, Central South University, Changsha 410083, China
| | - Chi Peng
- Institute of Environmental Engineering, School of Metallurgy and Environment, Central South University, Changsha 410083, China.
| | - Richmond Anaman
- Institute of Environmental Engineering, School of Metallurgy and Environment, Central South University, Changsha 410083, China
| | - Pan Zhang
- Department of Environment Ecology, School of Hunan Agricultural University, Changsha 410128, China
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25
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Ahmad A, Mustafa G, Rana A, Zia AR. Improvements in Bioremediation Agents and Their Modified Strains in Mediating Environmental Pollution. Curr Microbiol 2023; 80:208. [PMID: 37169903 DOI: 10.1007/s00284-023-03316-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Accepted: 04/30/2023] [Indexed: 05/13/2023]
Abstract
Environmental pollution has been a significant concern around the globe as the release of toxic pollutants is associated with carcinogenic, mutagenic, and teratogenic impacts on living organisms. Since microorganisms have the natural potential to degrade toxic metabolites into nontoxic forms, an eco-friendly approach known as bioremediation has been used to tackle toxic-induced pollution. Bioremediation has three fundamental levels, i.e., natural attenuation, bio-augmentation, and biostimulation in which the synthetic biology approach has been lately utilized to enhance the conventional bioremediation techniques. Recently, a more advanced approach of programmable nucleases such as zinc finger nucleases, tale-like effector nucleases, and clustered regularly interspaced short palindromic repeats Cas is being employed to engineer several bacterial, fungal, and algal strains for targeted mutagenesis by knocking in and out specific genes which are involved in reconstructing the metabolic pathways of native microbes. These genetically engineered microorganisms possess heavy metal resistance, greater substrate range, enhanced enzymatic activity, and binding affinity which accelerate the biodegradation of toxic pollutants to environmentally safe levels. This review provides a comprehensive understanding of how we can correlate the novel genetics-based approaches employed to produce genetically engineered microorganisms to enhance the biodegradation of hazardous pollutants, hence, developing a clean and sustainable ecosystem.
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Affiliation(s)
- Asmara Ahmad
- Department of Biochemistry, Government College University Faisalabad, Faisalabad, 38000, Pakistan
| | - Ghulam Mustafa
- Department of Biochemistry, Government College University Faisalabad, Faisalabad, 38000, Pakistan.
| | - Amna Rana
- Department of Biochemistry, Government College University Faisalabad, Faisalabad, 38000, Pakistan
| | - Abdur Rehman Zia
- Department of Biochemistry, Government College University Faisalabad, Faisalabad, 38000, Pakistan
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26
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Wang Z, Teng Y, Wang X, Xu Y, Li R, Hu W, Li X, Zhao L, Luo Y. Removal of cadmium and polychlorinated biphenyls by clover and the associated microbial community in a long-term co-contaminated soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 871:161983. [PMID: 36740062 DOI: 10.1016/j.scitotenv.2023.161983] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 01/29/2023] [Accepted: 01/29/2023] [Indexed: 06/18/2023]
Abstract
Legumes such as clover are cost-effective and environmentally friendly components of strategies for remediating soils contaminated with heavy metals or organic pollutants. However, the mechanisms by which clover remediates co-contaminated soils are unclear. The present study explored the effects of phytoremediation by clover on pollutant removal and the microbial community in soil co-contaminated with cadmium (Cd) and polychlorinated biphenyls (PCBs). After 18 months of phytoremediation, Cd removal increased from 20.25 % in the control to 40.65 % in soil planted with clover, while PCB removal increased from 29.81 % to 60.02 %. High-throughput sequencing analysis showed that the relative abundances of the bacterial phylum Proteobacteria and the diazotrophic genus Rhizobium increased significantly after phytoremediation. Random forest analysis showed that bacterial and diazotrophic diversity significantly influenced Cd and PCB removal. Furthermore, co-occurrence network and correlation analyses revealed that Rhizobiales and Micromonosporales were the main bacteria associated with Cd removal, while Rhizobiales, Burkholderiales, and Xanthomonadales were identified as the main degraders of PCBs. PICRUSt functional prediction demonstrated that the gene bphC, which is related to PCB degradation, was significantly increased in the rhizosphere soil in the presence of clover. These results provide a better understanding for further studies of remediation efficiency by clover, rhizosphere microbial response and remediation mechanisms of co-contaminated soils under in situ conditions in the field.
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Affiliation(s)
- Zuopeng Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Ying Teng
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China.
| | - Xia Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Yongfeng Xu
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Ran Li
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Wenbo Hu
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Xiuhua Li
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Ling Zhao
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Yongming Luo
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
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Tripathi M, Singh P, Singh R, Bala S, Pathak N, Singh S, Chauhan RS, Singh PK. Microbial biosorbent for remediation of dyes and heavy metals pollution: A green strategy for sustainable environment. Front Microbiol 2023; 14:1168954. [PMID: 37077243 PMCID: PMC10109241 DOI: 10.3389/fmicb.2023.1168954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2023] [Accepted: 03/10/2023] [Indexed: 04/05/2023] Open
Abstract
Toxic wastes like heavy metals and dyes are released into the environment as a direct result of industrialization and technological progress. The biosorption of contaminants utilizes a variety of biomaterials. Biosorbents can adsorb toxic pollutants on their surface through various mechanisms like complexation, precipitation, etc. The quantity of sorption sites that are accessible on the surface of the biosorbent affects its effectiveness. Biosorption’s low cost, high efficiency, lack of nutrient requirements, and ability to regenerate the biosorbent are its main advantages over other treatment methods. Optimization of environmental conditions like temperature, pH, nutrient availability, and other factors is a prerequisite to achieving optimal biosorbent performance. Recent strategies include nanomaterials, genetic engineering, and biofilm-based remediation for various types of pollutants. The removal of hazardous dyes and heavy metals from wastewater using biosorbents is a strategy that is both efficient and sustainable. This review provides a perspective on the existing literature and brings it up-to-date by including the latest research and findings in the field.
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Affiliation(s)
- Manikant Tripathi
- Biotechnology Program, Dr. Rammanohar Lohia Avadh University, Ayodhya, Uttar Pradesh, India
- *Correspondence: Manikant Tripathi,
| | - Pankaj Singh
- Biotechnology Program, Dr. Rammanohar Lohia Avadh University, Ayodhya, Uttar Pradesh, India
| | - Ranjan Singh
- Department of Microbiology, Dr. Rammanohar Lohia Avadh University, Ayodhya, Uttar Pradesh, India
| | - Saroj Bala
- Department of Microbiology, Punjab Agricultural University, Ludhiana, Punjab, India
| | - Neelam Pathak
- Department of Biochemistry, Dr. Rammanohar Lohia Avadh University, Ayodhya, Uttar Pradesh, India
| | - Sangram Singh
- Department of Biochemistry, Dr. Rammanohar Lohia Avadh University, Ayodhya, Uttar Pradesh, India
| | - Rajveer Singh Chauhan
- Department of Botany, Deen Dayal Upadhyaya Gorakhpur University, Gorakhpur, Uttar Pradesh, India
| | - Pradeep Kumar Singh
- Department of Biochemistry, Dr. Rammanohar Lohia Avadh University, Ayodhya, Uttar Pradesh, India
- Pradeep Kumar Singh,
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Borrego BB, Gracioso LH, Karolski B, Cardoso LOB, Melo LBU, Castro ÍB, Perpetuo EA. Tributyltin degrading microbial enzymes: A promising remediation approach. MARINE POLLUTION BULLETIN 2023; 189:114725. [PMID: 36805770 DOI: 10.1016/j.marpolbul.2023.114725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 02/06/2023] [Accepted: 02/09/2023] [Indexed: 06/18/2023]
Abstract
Brazil is one of the countries most impacted along the entire coastline by the presence of tributyltin (TBT), a biocide used in antifouling paints. Despite being banned since 2008, its use is still registered in the country, and it is possible to find recent inputs of this substance in places under the influence of shipyards, marinas, and fishing ports. In this study, a bacterium isolated from TBT-contaminated sediment from Santos and São Vicente Estuarine System (SESS) in Brazil, identified as Achromobacter sp., proved to be resistant to this compound. Furthermore, its crude enzymatic extract presented the ability to reduce up to 25 % of the initial TBT concentration in the liquid phase in 1 h, demonstrating to be a simple, fast, effective procedure and a potential tool for the environmental attenuation of TBT.
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Affiliation(s)
- Bruna Bacaro Borrego
- The Interunits Postgraduate Program in Biotechnology, University of São Paulo, PPIB-USP, Lineu Prestes Ave, 2415, São Paulo, SP, Brazil; Bio4Tec Lab, Environmental Research and Education Center, University of São Paulo, CEPEMA-POLI-USP, Cônego Domênico Rangoni Rd, 270 km, Cubatão, SP, Brazil.
| | - Louise Hase Gracioso
- Bio4Tec Lab, Environmental Research and Education Center, University of São Paulo, CEPEMA-POLI-USP, Cônego Domênico Rangoni Rd, 270 km, Cubatão, SP, Brazil; School of Arts, Science and Humanities of University of São Paulo, EACH-USP, Arlindo Bettio Ave, 1000, São Paulo, SP, Brazil
| | - Bruno Karolski
- Bio4Tec Lab, Environmental Research and Education Center, University of São Paulo, CEPEMA-POLI-USP, Cônego Domênico Rangoni Rd, 270 km, Cubatão, SP, Brazil
| | - Letícia Oliveira Bispo Cardoso
- Bio4Tec Lab, Environmental Research and Education Center, University of São Paulo, CEPEMA-POLI-USP, Cônego Domênico Rangoni Rd, 270 km, Cubatão, SP, Brazil; Chemical Engineering Department, Escola Politécnica, University of São Paulo, POLI-USP, Prof. Luciano Gualberto Ave, 380, São Paulo, SP, Brazil
| | - Letícia Beatriz Ueda Melo
- Bio4Tec Lab, Environmental Research and Education Center, University of São Paulo, CEPEMA-POLI-USP, Cônego Domênico Rangoni Rd, 270 km, Cubatão, SP, Brazil; Graduate Interdisciplinary Program in Marine Science and Technology, PPG-ICTMar-UNIFESP, Carvalho de Mendonça Ave, 144, Santos, SP, Brazil
| | - Ítalo Braga Castro
- Institute of Marine Sciences, Federal University of São Paulo, IMar-UNIFESP, Carvalho de Mendonça Ave, 144, Santos, SP, Brazil
| | - Elen Aquino Perpetuo
- Bio4Tec Lab, Environmental Research and Education Center, University of São Paulo, CEPEMA-POLI-USP, Cônego Domênico Rangoni Rd, 270 km, Cubatão, SP, Brazil; Graduate Interdisciplinary Program in Marine Science and Technology, PPG-ICTMar-UNIFESP, Carvalho de Mendonça Ave, 144, Santos, SP, Brazil; Institute of Marine Sciences, Federal University of São Paulo, IMar-UNIFESP, Carvalho de Mendonça Ave, 144, Santos, SP, Brazil
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Spiniello I, De Carluccio M, Castiglione S, Amineva E, Kostryukova N, Cicatelli A, Rizzo L, Guarino F. Landfill leachate treatment by a combination of a multiple plant hybrid constructed wetland system with a solar photoFenton process in a raceway pond reactor. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 331:117211. [PMID: 36657206 DOI: 10.1016/j.jenvman.2022.117211] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Revised: 12/21/2022] [Accepted: 12/31/2022] [Indexed: 06/17/2023]
Abstract
The sustainable and green treatment of landfill leachate (LL), produced by municipal solid waste, represents one of the most relevant challenges in the integrated waste management systems. Accordingly, in this work a green solution was investigated by coupling an innovative hybrid constructed wetland (HCW) to a solar photo-Fenton (SPF) process. A multiple layers HCW pilot plant including different medium substrates (sand, solid compost and carriers) and plant species (Phragmites australis, Arundo donax and A. plinii) was designed. The HCW was functionalised with compost tea solution to simultaneously provide high nutrient content for plants and increase the microorganism biodiversity. Process efficiency was investigated using different real LLs (young and mature) in terms of chemical oxygen demand (COD), nitrogen compounds, chlorides and metals. Removals in the range 75-95% were observed for all the parameters after ten days of leachate recirculation in the pilot plant. Subsequently, the SPF process was carried out in a raceway pond reactor (RPR) as polishing step, significantly improving COD removal (further 49%). HCW combined with SPF in RPR would allow to meet the corresponding limits according to the final use/fate of the effluent by modulating the main parameters of the process.
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Affiliation(s)
- Ivano Spiniello
- Department of Chemistry and Biology "A. Zambelli", University of Salerno, Via Giovanni Paolo II 132, 84084, Fisciano, SA, Italy
| | - Marco De Carluccio
- Water Science and Technology (WaSTe) Group, Department of Civil Engineering, University of Salerno, Via Giovanni Paolo II 132, 84084, Fisciano, SA, Italy
| | - Stefano Castiglione
- Department of Chemistry and Biology "A. Zambelli", University of Salerno, Via Giovanni Paolo II 132, 84084, Fisciano, SA, Italy
| | - Enzhe Amineva
- Department of Environmental Health & Safety, Ufa State Aviation Technical University, Marks 12, 450077, Ufa, Republic of Bashkortostan, Russian Federation
| | - Natalia Kostryukova
- Department of Environmental Health & Safety, Ufa State Aviation Technical University, Marks 12, 450077, Ufa, Republic of Bashkortostan, Russian Federation
| | - Angela Cicatelli
- Department of Chemistry and Biology "A. Zambelli", University of Salerno, Via Giovanni Paolo II 132, 84084, Fisciano, SA, Italy.
| | - Luigi Rizzo
- Water Science and Technology (WaSTe) Group, Department of Civil Engineering, University of Salerno, Via Giovanni Paolo II 132, 84084, Fisciano, SA, Italy.
| | - Francesco Guarino
- Department of Chemistry and Biology "A. Zambelli", University of Salerno, Via Giovanni Paolo II 132, 84084, Fisciano, SA, Italy
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Petroleum Hydrocarbon Catabolic Pathways as Targets for Metabolic Engineering Strategies for Enhanced Bioremediation of Crude-Oil-Contaminated Environments. FERMENTATION-BASEL 2023. [DOI: 10.3390/fermentation9020196] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
Abstract
Anthropogenic activities and industrial effluents are the major sources of petroleum hydrocarbon contamination in different environments. Microbe-based remediation techniques are known to be effective, inexpensive, and environmentally safe. In this review, the metabolic-target-specific pathway engineering processes used for improving the bioremediation of hydrocarbon-contaminated environments have been described. The microbiomes are characterised using environmental genomics approaches that can provide a means to determine the unique structural, functional, and metabolic pathways used by the microbial community for the degradation of contaminants. The bacterial metabolism of aromatic hydrocarbons has been explained via peripheral pathways by the catabolic actions of enzymes, such as dehydrogenases, hydrolases, oxygenases, and isomerases. We proposed that by using microbiome engineering techniques, specific pathways in an environment can be detected and manipulated as targets. Using the combination of metabolic engineering with synthetic biology, systemic biology, and evolutionary engineering approaches, highly efficient microbial strains may be utilised to facilitate the target-dependent bioprocessing and degradation of petroleum hydrocarbons. Moreover, the use of CRISPR-cas and genetic engineering methods for editing metabolic genes and modifying degradation pathways leads to the selection of recombinants that have improved degradation abilities. The idea of growing metabolically engineered microbial communities, which play a crucial role in breaking down a range of pollutants, has also been explained. However, the limitations of the in-situ implementation of genetically modified organisms pose a challenge that needs to be addressed in future research.
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Saravanan A, Kumar PS, Duc PA, Rangasamy G. Strategies for microbial bioremediation of environmental pollutants from industrial wastewater: A sustainable approach. CHEMOSPHERE 2023; 313:137323. [PMID: 36410512 DOI: 10.1016/j.chemosphere.2022.137323] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 10/28/2022] [Accepted: 11/17/2022] [Indexed: 06/16/2023]
Abstract
Heavy metals are hazardous and bring about critical exposure risks to humans and animals, even at low concentrations. An assortment of approaches has been attempted to remove the water contaminants and keep up with water quality, for that microbial bioremediation is a promising way to mitigate these pollutants from the contaminated water. The flexibility of microorganisms to eliminate a toxic pollutant creates bioremediation an innovation that can be applied in various water and soil conditions. This review insight into the sources, occurrence of toxic heavy metals, and their hazardous human exposure risk. In this review, significant attention to microbial bioremediation for pollutant mitigation from various ecological lattices has been addressed. Mechanism of microbial bioremediation in the aspect of factors affecting, the role of microbes and interaction between the microbes and pollutants are the focal topics of this review. In addition, emerging strategies and technologies developed in the field of genetically engineered micro-organism and micro-organism-aided nanotechnology has shown up as powerful bioremediation tool with critical possibilities to eliminate water pollutants.
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Affiliation(s)
- A Saravanan
- Department of Sustainable Engineering, Institute of Biotechnology, Saveetha School of Engineering, SIMATS, Chennai, 602105, India
| | - Ponnusamy Senthil Kumar
- Green Technology and Sustainable Development in Construction Research Group, School of Engineering and Technology, Van Lang University, Ho Chi Minh City, Vietnam.
| | - Pham Anh Duc
- Faculty of Safety Engineering, School of Engineering and Technology, Van Lang University, Ho Chi Minh City, Vietnam
| | - Gayathri Rangasamy
- University Centre for Research and Development & Department of Civil Engineering, Chandigarh University, Gharuan, Mohali, Punjab, 140413, India
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Yan X, Gao B, Wang J, Zhu X, Zhang M. Insights into remediation effects and bacterial diversity of different remediation measures in rare earth mine soil with SO 4 2- and heavy metals. Front Microbiol 2023; 14:1050635. [PMID: 37032866 PMCID: PMC10079077 DOI: 10.3389/fmicb.2023.1050635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Accepted: 02/15/2023] [Indexed: 04/11/2023] Open
Abstract
The increased demand for rare earth resources has led to an increase in the development of rare earth mines (REMs). However, the production of high-concentration leaching agents (SO4 2-) and heavy metals as a result of rare earth mining has increased, necessitating the removal of contaminants. Here, a series of experiments with different remediation measures, including control (CK), sulfate-reducing bacteria (SRB) alone (M), chemicals (Ca(OH)2, 1.5 g/kg) plus SRB (CM-L), chemicals (Ca(OH)2, 3.0 g/kg) plus SRB (CM-M), and chemicals (Ca(OH)2, 4.5 g/kg) plus SRB (CM-H), were conducted to investigate the removal effect of SO4 2-, Pb, Zn, and Mn from the REM soil. Then, a high-throughput sequencing technology was applied to explore the response of bacterial community diversity and functions with different remediation measures. The results indicated that CM-M treatment had a more efficient removal effect for SO4 2-, Pb, Zn, and Mn than the others, up to 94.6, 88.3, 98.7, and 91%, respectively. Soil bacterial abundance and diversity were significantly affected by treatments with the inoculation of SRB in comparison with CK. The relative abundance of Desulfobacterota with the ability to transform SO4 2- into S2- increased significantly in all treatments, except for CK. There was a strong correlation between environmental factors (pH, Eh, SO4 2-, Pb, and Zn) and bacterial community structure. Furthermore, functional prediction analysis revealed that the SRB inoculation treatments significantly increased the abundance of sulfate respiration, sulfite respiration, and nitrogen fixation, while decreasing the abundance of manganese oxidation, dark hydrogen oxidation, and denitrification. This provides good evidence for us to understand the difference in removal efficiency, bacterial community structure, and function by different remediation measures that help select a more efficient and sustainable method to remediate contaminants in the REM soil.
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Affiliation(s)
- Xiao Yan
- GRINM Resources and Environment Tech. Co., Ltd., Beijing, China
- National Engineering Research Center for Environment-Friendly Metallurgy in Producing Premium Non-Ferrous Metals, GRINM Group Co., Ltd., Beijing, China
| | - Bowen Gao
- GRINM Resources and Environment Tech. Co., Ltd., Beijing, China
- National Engineering Research Center for Environment-Friendly Metallurgy in Producing Premium Non-Ferrous Metals, GRINM Group Co., Ltd., Beijing, China
| | - Jianlei Wang
- GRINM Resources and Environment Tech. Co., Ltd., Beijing, China
- National Engineering Research Center for Environment-Friendly Metallurgy in Producing Premium Non-Ferrous Metals, GRINM Group Co., Ltd., Beijing, China
| | - Xuezhe Zhu
- GRINM Resources and Environment Tech. Co., Ltd., Beijing, China
- National Engineering Research Center for Environment-Friendly Metallurgy in Producing Premium Non-Ferrous Metals, GRINM Group Co., Ltd., Beijing, China
- School of Metallurgy, Northeastern University, Shenyang, China
- GRIMAT Engineering Institute Co., Ltd., Beijing, China
| | - Mingjiang Zhang
- GRINM Resources and Environment Tech. Co., Ltd., Beijing, China
- National Engineering Research Center for Environment-Friendly Metallurgy in Producing Premium Non-Ferrous Metals, GRINM Group Co., Ltd., Beijing, China
- *Correspondence: Mingjiang Zhang,
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Jiang Z, An N, Chu Y, Cao B, Wu F, Zhang Y, Zhang Y, Li Y, Zhang Y. Growth, biofilm formation and atrazine degrading gene (trzN) expression of Arthrobacter sp. DNS10 cultured with montmorillonite, kaolinite and goethite. CHEMOSPHERE 2022; 307:135904. [PMID: 35940415 DOI: 10.1016/j.chemosphere.2022.135904] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 07/26/2022] [Accepted: 07/30/2022] [Indexed: 06/15/2023]
Abstract
The viable and degradation potential of the strains which adhered to soil minerals are essential for eliminating organic pollutants from soil. Herein, the interaction (growth, biofilm formation and survive) of Arthrobacter sp. DNS10, an atrazine degrading strain, with three kinds of typical soil minerals, such as montmorillonite, kaolinite and goethite, as well as the atrazine degradation gene (trzN) expression of the strain in the minerals system were studied. The results showed that montmorillonite had significant promotion effect on the growth of strain DNS10, followed by kaolinite, but goethite significantly inhibited the growth of strain DNS10. In contrast, goethite notably promoted the biofilm formation and there was less biofilm detected in montmorillonite containing system. The percentage of the survival bacteria in the biofilm that formed on montmorillonite, kaolinite and goethite was 53.8%, 40.8% and 28.2%. In addition, there were more reactive oxygen species (ROS) were detected in the cells that exposed to goethite than those of the cells exposed to kaolinite and montmorillonite. These results suggest that the electrostatic repulsion between kaolinite/montmorillonite and strain DNS10 prevents them from contacting each other and facilitates bacterial growth by allowing the strain to obtain more nutrients. Oppositely, the needle-like morphology of goethite might damage the strain DNS10 cell when they were combined by electrostatic attraction, and the goethite induced ROS also aggravate the cytotoxicity of goethite on strain DNS10. In addition, the relative transcription of trzN in the cells contacted with montmorillonite, kaolinite and goethite was 0.94-, 0.27- and 0.20- fold of the no mineral exposure treatment. Briefly, this research suggests that the minerals with different structure and/or physicochemical characteristics might cause various trend for the biofilm formation and degradation potential of the bacteria.
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Affiliation(s)
- Zhao Jiang
- School of Resources &; Environment, Northeast Agricultural University, Harbin, 150030, PR China
| | - Ning An
- School of Resources &; Environment, Northeast Agricultural University, Harbin, 150030, PR China
| | - Yuxin Chu
- School of Resources &; Environment, Northeast Agricultural University, Harbin, 150030, PR China
| | - Bo Cao
- School of Resources &; Environment, Northeast Agricultural University, Harbin, 150030, PR China
| | - Fengxue Wu
- School of Resources &; Environment, Northeast Agricultural University, Harbin, 150030, PR China
| | - Yue Zhang
- School of Resources &; Environment, Northeast Agricultural University, Harbin, 150030, PR China
| | - Yuxin Zhang
- School of Resources &; Environment, Northeast Agricultural University, Harbin, 150030, PR China
| | - Yu Li
- School of Resources &; Environment, Northeast Agricultural University, Harbin, 150030, PR China
| | - Ying Zhang
- School of Resources &; Environment, Northeast Agricultural University, Harbin, 150030, PR China; Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130132, PR China.
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Sharma P, Bano A, Singh SP, Sharma S, Xia C, Nadda AK, Lam SS, Tong YW. Engineered microbes as effective tools for the remediation of polyaromatic aromatic hydrocarbons and heavy metals. CHEMOSPHERE 2022; 306:135538. [PMID: 35792210 DOI: 10.1016/j.chemosphere.2022.135538] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Revised: 06/04/2022] [Accepted: 06/26/2022] [Indexed: 06/15/2023]
Abstract
Heavy metals (HMs) and polycyclic aromatic hydrocarbons (PAHs) have become a major concern to human health and the environment due to rapid industrialization and urbanization. Traditional treatment measures for removing toxic substances from the environment have largely failed, and thus development and advancement in newer remediation techniques are of utmost importance. Rising environmental pollution with HMs and PAHs prompted the research on microbes and the development of genetically engineered microbes (GEMs) for reducing pollution via the bioremediation process. The enzymes produced from a variety of microbes can effectively treat a range of pollutants, but evolutionary trends revealed that various emerging pollutants are resistant to microbial or enzymatic degradation. Naturally, existing microbes can be engineered using various techniques including, gene engineering, directed evolution, protein engineering, media engineering, strain engineering, cell wall modifications, rationale hybrid design, and encapsulation or immobilization process. The immobilization of microbes and enzymes using a variety of nanomaterials, membranes, and supports with high specificity toward the emerging pollutants is also an effective strategy to capture and treat the pollutants. The current review focuses on successful bioremediation techniques and approaches that make use of GEMs or engineered enzymes. Such engineered microbes are more potent than natural strains and have greater degradative capacities, as well as rapid adaptation to various pollutants as substrates or co-metabolizers. The future for the implementation of genetic engineering to produce such organisms for the benefit of the environment andpublic health is indeed long and valuable.
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Affiliation(s)
- Pooja Sharma
- Environmental Research Institute, National University of Singapore, 1 Create Way, 138602, Singapore; Energy and Environmental Sustainability for Megacities (E2S2) Phase II, Campus for Research Excellence and Technological Enterprise (CREATE), 1 CREATE Way, Singapore, 138602, Singapore
| | - Ambreen Bano
- IIRC-3, Plant-Microbe Interaction and Molecular Immunology Laboratory, Department of Biosciences, Faculty of Sciences, Integral University, Lucknow, UP, India
| | - Surendra Pratap Singh
- Plant Molecular Biology Laboratory, Department of Botany, Dayanand Anglo-Vedic (PG) College, Chhatrapati Shahu Ji Maharaj University, Kanpur, 208001, India
| | - Swati Sharma
- University Institute of Biotechnology, Chandigarh University, Gharuan, Mohali, Punjab, 140413, India
| | - Changlei Xia
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, International Innovation Center for Forest Chemicals and Materials, College of Materials Science and Engineering, Nanjing Forestry University, Nanjing, Jiangsu 210037, China; Dehua Tubao New Decoration Material Co., Ltd., Huzhou, Zhejiang 313200, China
| | - Ashok Kumar Nadda
- Department of Biotechnology and Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, 173 234, India.
| | - Su Shiung Lam
- Higher Institution Centre of Excellence (HICoE), Institute of Tropical Aquaculture and Fisheries (AKUATROP), Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia; Sustainability Cluster, School of Engineering, University of Petroleum & Energy Studies, Dehradun, Uttarakhand 248007, India.
| | - Yen Wah Tong
- Environmental Research Institute, National University of Singapore, 1 Create Way, 138602, Singapore; Energy and Environmental Sustainability for Megacities (E2S2) Phase II, Campus for Research Excellence and Technological Enterprise (CREATE), 1 CREATE Way, Singapore, 138602, Singapore; Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive, 117585, Singapore.
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Yaashikaa PR, Kumar PS. Bioremediation of hazardous pollutants from agricultural soils: A sustainable approach for waste management towards urban sustainability. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 312:120031. [PMID: 36041569 DOI: 10.1016/j.envpol.2022.120031] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2022] [Revised: 08/08/2022] [Accepted: 08/20/2022] [Indexed: 06/15/2023]
Abstract
Soil contamination is perhaps the most hazardous issue all over the world; these emerging pollutants ought to be treated to confirm the safety of our living environment. Fast industrialization and anthropogenic exercises have resulted in different ecological contamination and caused serious dangerous health effects to humans and animals. Agro wastes are exceptionally directed because of their high biodegradability. Effluents from the agro-industry are a possibly high environmental risk that requires suitable, low-cost, and extensive treatment. Soil treatment using a bioremediation method is considered an eco-accommodating and reasonable strategy for removing toxic pollutants from agricultural fields. The present review was led to survey bioremediation treatability of agro soil by microbes, decide functional consequences for microbial performance and assess potential systems to diminish over potentials. The presence of hazardous pollutants in agricultural soil and sources, and toxic health effects on humans has been addressed in this review. The present review emphasizes an outline of bioremediation for the effective removal of toxic contaminants in the agro field. In addition, factors influencing recent advancements in the bioremediation process have been discussed. The review further highlights the roles and mechanisms of micro-organisms in the bioremediation of agricultural fields.
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Affiliation(s)
- P R Yaashikaa
- Department of Biotechnology, Saveetha School of Engineering, SIMATS, Chennai - 602105, India
| | - P Senthil Kumar
- Department of Chemical Engineering, Sri Sivasubramaniya Nadar College of Engineering, Chennai - 603110, India; Centre of Excellence in Water Research (CEWAR), Sri Sivasubramaniya Nadar College of Engineering, Chennai - 603110, India.
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36
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Chen J, Liu Y, Diep P, Mahadevan R. Genetic engineering of extremely acidophilic Acidithiobacillus species for biomining: Progress and perspectives. JOURNAL OF HAZARDOUS MATERIALS 2022; 438:129456. [PMID: 35777147 DOI: 10.1016/j.jhazmat.2022.129456] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 06/19/2022] [Accepted: 06/22/2022] [Indexed: 06/15/2023]
Abstract
With global demands for mineral resources increasing and ore grades decreasing, microorganisms have been increasingly deployed in biomining applications to recover valuable metals particularly from normally considered waste, such as low-grade ores and used consumer electronics. Acidithiobacillus are a genus of chemolithoautotrophic extreme acidophiles that are commonly found in mining process waters and acid mine drainage, which have been reported in several studies to aid in metal recovery from bioremediation of metal-contaminated sites. Compared to conventional mineral processing technologies, biomining is often cited as a more sustainable and environmentally friendly process, but long leaching cycles and low extraction efficiency are main disadvantages that have hampered its industrial applications. Genetic engineering is a powerful technology that can be used to enhance the performance of microorganisms, such as Acidithiobacillus species. In this review, we compile existing data on Acidithiobacillus species' physiological traits and genomic characteristics, progresses in developing genetic tools to engineer them: plasmids, shutter vectors, transformation methods, selection markers, promoters and reporter systems developed, and genome editing techniques. We further propose genetic engineering strategies for enhancing biomining efficiency of Acidithiobacillus species and provide our perspectives on their future applications.
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Affiliation(s)
- Jinjin Chen
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Canada
| | - Yilan Liu
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Canada
| | - Patrick Diep
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Canada
| | - Radhakrishnan Mahadevan
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Canada; Institute of Biomedical Engineering, University of Toronto, Toronto, Canada.
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Wang N, Lu H, Xu X, Liu Y, Li Y, Yuan F, Yang Q. Enhanced oil removal from oily sand by injecting micro-macrobubbles in swirl elution. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 316:115175. [PMID: 35658268 DOI: 10.1016/j.jenvman.2022.115175] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2021] [Revised: 04/21/2022] [Accepted: 04/24/2022] [Indexed: 06/15/2023]
Abstract
Environmental contamination by petroleum hydrocarbons was exacerbated by oil pipeline breaks, marine oil spills and discharges from industrial production. To further improve the removal performance of petroleum hydrocarbons in solid particles, the deoiling experiments of swirl elution with micro-macrobubbles on oily sands were carried out in this paper. Experiment results indicated that when particles fell from the center of the bubble, the collision efficiency was 99.3%. The instantaneous contact angle (ICA) between the macrobubbles and the oil layer was improved in the presence of microbubbles. Furthermore, the maximum ICA of bubbles attaching to the oil layer was found to occur at pH 9 in the system of oily sand mixtures ranging from pH 5 to pH 14. This finding indicated that the slightly alkaline solution was more advantageous for bubbles to attach to the oil layer than the highly alkaline solution. The optimum condition for the elution of oily sand in the mixture of pH 7-14 was pH 12, and the oil removal efficiency was 85.4% for 10 min. The oil removal efficiency of swirl elution (SE) with bubbles on oily sand at pH 12 for 10 min was superior to either SE without bubbles or air flotation (AF). The results show that the swirl elution with bubbles can effectively enhance the oil removal efficiency of oily sands and provide guidance for controlling the environmental petroleum hydrocarbon contamination and reducing the usage of surfactants.
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Affiliation(s)
- Ning Wang
- School of Mechanical and Power Engineering, East China University of Science and Technology, Shanghai, 200237, PR China
| | - Hao Lu
- School of Mechanical and Power Engineering, East China University of Science and Technology, Shanghai, 200237, PR China
| | - Xiao Xu
- School of Mechanical and Power Engineering, East China University of Science and Technology, Shanghai, 200237, PR China
| | - Yiqian Liu
- School of Mechanical and Power Engineering, East China University of Science and Technology, Shanghai, 200237, PR China
| | - Yudong Li
- School of Mechanical and Power Engineering, East China University of Science and Technology, Shanghai, 200237, PR China
| | - Fang Yuan
- School of Mechanical and Power Engineering, East China University of Science and Technology, Shanghai, 200237, PR China
| | - Qiang Yang
- School of Mechanical and Power Engineering, East China University of Science and Technology, Shanghai, 200237, PR China; State Key Laboratory of Chemical Engineering, East China University of Science and Technology, Shanghai, 200237, PR China.
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Wang Y, Narayanan M, Shi X, Chen X, Li Z, Natarajan D, Ma Y. Plant growth-promoting bacteria in metal-contaminated soil: Current perspectives on remediation mechanisms. Front Microbiol 2022; 13:966226. [PMID: 36033871 PMCID: PMC9404692 DOI: 10.3389/fmicb.2022.966226] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Accepted: 07/13/2022] [Indexed: 11/18/2022] Open
Abstract
Heavy metal contamination in soils endangers humans and the biosphere by reducing agricultural yield and negatively impacting ecosystem health. In recent decades, this issue has been addressed and partially remedied through the use of “green technology,” which employs metal-tolerant plants to clean up polluted soils. Furthermore, the global climate change enhances the negative effects of climatic stressors (particularly drought, salinity, and extreme temperatures), thus reducing the growth and metal accumulation capacity of remediating plants. Plant growth-promoting bacteria (PGPB) have been widely introduced into plants to improve agricultural productivity or the efficiency of phytoremediation of metal-contaminated soils via various mechanisms, including nitrogen fixation, phosphate solubilization, phytohormone production, and biological control. The use of metal-tolerant plants, as well as PGPB inoculants, should hasten the process of moving this technology from the laboratory to the field. Hence, it is critical to understand how PGPB ameliorate environmental stress and metal toxicity while also inducing plant tolerance, as well as the mechanisms involved in such actions. This review attempts to compile the scientific evidence on this topic, with a special emphasis on the mechanism of PGPB involved in the metal bioremediation process [plant growth promotion and metal detoxification/(im)mobilization/bioaccumulation/transformation/translocation] and deciphering combined stress (metal and climatic stresses) tolerance.
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Affiliation(s)
- Yue Wang
- College of Resources and Environment, Southwest University, Chongqing, China
| | - Mathiyazhagan Narayanan
- Division of Research and Innovation, Department of Biotechnology, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Science, Chennai, Tamil Nadu, India
| | - Xiaojun Shi
- College of Resources and Environment, Southwest University, Chongqing, China
| | - Xinping Chen
- College of Resources and Environment, Southwest University, Chongqing, China
| | - Zhenlun Li
- College of Resources and Environment, Southwest University, Chongqing, China
| | | | - Ying Ma
- College of Resources and Environment, Southwest University, Chongqing, China
- *Correspondence: Ying Ma,
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Feng LA, Liang B, Zeng X, Shi C, Yin H, Feng Y, Chen Y, Yu Q. Engineered bacterium-binding protein promotes root recruitment of functional bacteria for enhanced cadmium removal from wastewater by phytoremediation. WATER RESEARCH 2022; 221:118746. [PMID: 35738062 DOI: 10.1016/j.watres.2022.118746] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Revised: 05/31/2022] [Accepted: 06/13/2022] [Indexed: 06/15/2023]
Abstract
Functional bacteria promote the efficiency of phytoremediation by enhancing plant growth and participating in decontamination. However, their activity is frequently compromised by the weakness of their interaction with plant roots. In this study, we designed the artificial protein LcGC composed of a bacterium-binding domain, a GFP fluorescence reporter, and a carbohydrate-binding domain to function as a physical contact between functional bacteria and plant roots. This protein was then expressed in an engineered yeast cell factory and extracted to assess its effect on rhizosphere microbiome composition, plant growth, and cadmium removal in a simulated phytoremediation system containing the remediation plant Lemna minor and the functional heavy metal-capturing bacteria Cupriavidus taiwanensis and Pseudomonas putida. LcGC efficiently bound bacterial cell wall components and glucan, endowing it high efficiency to bind both functional bacteria and plant roots. Scanning microscopy and microbiome analysis revealed that LcGC enhanced root recruitment and colonization of functional bacteria on the root surfaces. Furthermore, LcGC with the aid of single C. taiwanensis or of C. taiwanensis and P. putida in combination promoted plant growth, enhanced tolerance to cadmium-induced oxidative stress, and consequently improved cadmium-removing capacity of the plants, with the percent of cadmium removal reaching up to 91% for LcGC plus C. taiwanensis, and to 96% for LcGC plus C. taiwanensis and P. putida on day 7. This study provided a physical contact-based strategy to enhance the interaction between functional microbes and plant roots for efficient phytoremediation.
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Affiliation(s)
- Li-An Feng
- Department of Microbiology, Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin 300071, PR China
| | - Boyuan Liang
- Department of Microbiology, Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin 300071, PR China
| | - Xinlin Zeng
- Department of Microbiology, Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin 300071, PR China
| | - Cong Shi
- School of Environmental Science and Engineering, Tiangong University, Tianjin 300387, PR China
| | - Hongda Yin
- Department of Microbiology, Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin 300071, PR China
| | - Yuming Feng
- Department of Microbiology, Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin 300071, PR China
| | - Yuqiao Chen
- Department of Microbiology, Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin 300071, PR China
| | - Qilin Yu
- Department of Microbiology, Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin 300071, PR China.
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Maqsood Q, Hussain N, Mumtaz M, Bilal M, Iqbal HMN. Novel strategies and advancement in reducing heavy metals from the contaminated environment. Arch Microbiol 2022; 204:478. [PMID: 35831495 DOI: 10.1007/s00203-022-03087-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Accepted: 06/20/2022] [Indexed: 11/27/2022]
Abstract
The most contemporary ecological issues are the dumping of unprocessed factories' effluent. As a result, there is an increasing demand for creative, practical, environmentally acceptable, and inexpensive methodologies to remediate inorganic metals (Hg, Cr, Pb, and Cd) liquidated into the atmosphere, protecting ecosystems. Latest innovations in biological metals have driven natural treatment as a viable substitute for traditional approaches in this area. To eliminate pesticide remains from soil/water sites, technologies such as oxidation, burning, adsorption, and microbial degradation have been established. Bioremediation is a more cost-effective and ecologically responsible means of removing heavy metals than conventional alternatives. As a result, microorganisms have emerged as a necessary component of methyl breakdown and detoxification via metabolic reactions and hereditary characteristics. The utmost operative variant for confiscating substantial metals commencing contaminated soil was A. niger, which had a maximum bioaccumulation efficiency of 98% (Cd) and 43% (Cr). Biosensor bacteria are both environmentally sustainable and cost-effective. As a result, microbes have a range of metal absorption processes that allow them to have higher metal biosorption capabilities. Additionally, the biosorption potential of bacterium, fungus, biofilm, and algae, inherently handled microorganisms that immobilized microbial cells for the elimination of heavy metals, was reviewed in this study. Furthermore, we discuss some of the challenges and opportunities associated with producing effective heavy metal removal techniques, such as those that employ different types of nanoparticles.
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Affiliation(s)
- Quratulain Maqsood
- Centre for Applied Molecular Biology, University of the Punjab, Lahore, Pakistan
| | - Nazim Hussain
- Centre for Applied Molecular Biology, University of the Punjab, Lahore, Pakistan
| | - Mehvish Mumtaz
- Centre for Applied Molecular Biology, University of the Punjab, Lahore, Pakistan
| | - Muhammad Bilal
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huai'an, 223003, China.
| | - Hafiz M N Iqbal
- Tecnologico de Monterrey, School of Engineering and Sciences, 64849, Monterrey, Mexico.
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41
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Saravanan A, Kumar PS, Ramesh B, Srinivasan S. Removal of toxic heavy metals using genetically engineered microbes: Molecular tools, risk assessment and management strategies. CHEMOSPHERE 2022; 298:134341. [PMID: 35307383 DOI: 10.1016/j.chemosphere.2022.134341] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Revised: 03/03/2022] [Accepted: 03/14/2022] [Indexed: 06/14/2023]
Abstract
The direct release of industrial effluent into the water and other anthropogenic activities causes water pollution. Heavy metal ions are the primary contaminant in the industrial effluents which are exceptionally toxic at low concentrations, terribly disturb the endurance equilibrium of activities in the eco-system and be remarkably hazardous to human health. Different conventional treatment methodologies were utilized for the removal of toxic pollutants from the contaminated water which has several drawbacks such as cost-ineffective and lower efficiency. Recently, genetically modified micro-organisms (GMMs) stand-out for the removal of toxic heavy metals are viewed as an economically plausible and environmentally safe technique. GMMs are microorganisms whose genetic material has been changed utilizing genetic engineering techniques that exhibit enhanced removal efficiency in comparison with the other treatment methodologies. The present review comments the GMMs such as bacteria, algae and fungi and their potential for the removal of toxic heavy metals. This review provides current aspects of different advanced molecular tools which have been used to manipulate micro-organisms through genetic expression for the breakdown of metal compounds in polluted areas. The strategies, major limitations and challenges for genetic engineering of micro-organisms have been reviewed. The current review investigates the approaches working on utilizing genetically modified micro-organisms and effective removal techniques.
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Affiliation(s)
- A Saravanan
- Department of Sustainable Engineering, Saveetha School of Engineering, SIMATS, Chennai, 602105, India
| | - P Senthil Kumar
- Department of Chemical Engineering, Sri Sivasubramaniya Nadar College of Engineering, Chennai, 603110, India; Centre of Excellence in Water Research (CEWAR), Sri Sivasubramaniya Nadar College of Engineering, Chennai, 603110, India.
| | - B Ramesh
- Department of Sustainable Engineering, Saveetha School of Engineering, SIMATS, Chennai, 602105, India
| | - S Srinivasan
- Department of Sustainable Engineering, Saveetha School of Engineering, SIMATS, Chennai, 602105, India
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Gong H, Zhao L, Rui X, Hu J, Zhu N. A review of pristine and modified biochar immobilizing typical heavy metals in soil: Applications and challenges. JOURNAL OF HAZARDOUS MATERIALS 2022; 432:128668. [PMID: 35325861 DOI: 10.1016/j.jhazmat.2022.128668] [Citation(s) in RCA: 58] [Impact Index Per Article: 29.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Revised: 03/01/2022] [Accepted: 03/08/2022] [Indexed: 05/28/2023]
Abstract
In recent years, the application of biochar in the remediation of heavy metals (HMs) contaminated soil has received tremendous attention globally. We reviewed the latest research on the immobilization of soil HMs by biochar almost in the last 5 years (until 2021). The methods, effects and mechanisms of biochar and modified biochar on the immobilization of typical HMs in soil have been systematically summarized. In general, the HMs contaminating the soil can be categorized into two groups, the oxy-anionic HMs (As and Cr) and the cationic HMs (Pb, Cd, etc.). Reduction and precipitation of oxy-anionic HMs by biochar/modified biochar are the dominant mechanism for reducing HMs toxicity. Pristine biochar can effectively immobilize cationic HMs. The commonly applied modification method is to add substances that can precipitate HMs to the biochar. In addition, we assessed the risks of biochar applications. For instance, biochar may cause the leaching of certain HMs; biochar aging; co-transportation of biochar nanoparticles with HMs. Future work should focus on the artificial/intelligent design of biochar to make it suitable for remediation of multiple HMs contaminated soil.
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Affiliation(s)
- Huabo Gong
- School of Environmental Science & Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Ling Zhao
- School of Environmental Science & Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Xuan Rui
- School of Environmental Science & Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Jinwen Hu
- School of Environmental Science & Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Nanwen Zhu
- School of Environmental Science & Engineering, Shanghai Jiao Tong University, Shanghai 200240, China.
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Daâssi D, Qabil Almaghribi F. Petroleum-contaminated soil: environmental occurrence and remediation strategies. 3 Biotech 2022; 12:139. [PMID: 35646506 DOI: 10.1007/s13205-022-03198-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Accepted: 05/04/2022] [Indexed: 11/24/2022] Open
Abstract
Soil is an environmental matrix that carries life for all living things. With the rise of human activities and the acceleration of population, the soil has been exposed in part to pollution by the discharge of various xenobiotics and persistent pollutants into it. The disposal of toxic substances such as polycyclic aromatic hydrocarbons (PAHs) alters soil properties, affects microbial biodiversity, and damages objects. Considering the mutagenicity, carcinogenicity, and toxicity of petroleum hydrocarbons, the restoration and clean-up of PAH-polluted sites represents an important technological and environmental challenge for sustainable growth and development. Though several treatment methods to remediate PAH-polluted soils exist, interesting bacteria, fungi, and their enzymes receive considerable attention. The aim of the present review is to discuss PAHs' impact on soil properties. Also, this review illustrates physicochemical and biological remediation strategies for treating PAH-contaminated soil. The degradation pathways and contributing factors of microbial PAH-degradation are elucidated. This review also assesses the use of conventional microbial remediation compared to the application of genetically engineered microorganisms (GEM) that can provide a cost-effective and eco-friendly PAH-bioremediation strategy.
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Affiliation(s)
- Dalel Daâssi
- Department of Biology, College of Sciences and Arts, Khulais, University of Jeddah, Jeddah, Saudi Arabia
| | - Fatimah Qabil Almaghribi
- Department of Biology, College of Sciences and Arts, Khulais, University of Jeddah, Jeddah, Saudi Arabia
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Genetically Engineered Organisms: Possibilities and Challenges of Heavy Metal Removal and Nanoparticle Synthesis. CLEAN TECHNOLOGIES 2022. [DOI: 10.3390/cleantechnol4020030] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Heavy metal removal using genetically engineered organisms (GEOs) offer more cost and energy-efficient, safer, greener, and environmentally-friendly opportunities as opposed to conventional strategies requiring hazardous or toxic chemicals, complex processes, and high pressure/temperature. Additionally, GEOs exhibited superior potentials for biosynthesis of nanoparticles with significant capabilities in bioreduction of heavy metal ions that get accumulated as nanocrystals of various shapes/dimensions. In this context, GEO-aided nanoparticle assembly and the related reaction conditions should be optimized. Such strategies encompassing biosynthesized nanoparticle conforming to the green chemistry precepts help minimize the deployment of toxic precursors and capitalize on the safety and sustainability of the ensuing nanoparticle. Different GEOs with improved uptake and appropriation of heavy metal ions potentials have been examined for bioreduction and biorecovery appliances, but effective implementation to industrial-scale practices is nearly absent. In this perspective, the recent developments in heavy metal removal and nanoparticle biosynthesis using GEOs are deliberated, focusing on important challenges and future directions.
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Abstract
Crude oil is a viscous dark liquid resource composed by a mix of hydrocarbons which, after refining, is used for the elaboration of distinct products. A major concern is that many petroleum components are highly toxic due to their teratogenic, hemotoxic, and carcinogenic effects, becoming an environmental concern on a global scale, which must be solved through innovative, efficient, and sustainable techniques. One of the most widely used procedures to totally degrade contaminants are biological methods such as bioremediation. Synthetic biology is a scientific field based on biology and engineering principles, with the purpose of redesigning and restructuring microorganisms to optimize or create new biological systems with enhanced features. The use of this discipline offers improvement of bioremediation processes. This article will review some of the techniques that use synthetic biology as a platform to be used in the area of hydrocarbon bioremediation.
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Bacterial Biosorbents, an Efficient Heavy Metals Green Clean-Up Strategy: Prospects, Challenges, and Opportunities. Microorganisms 2022; 10:microorganisms10030610. [PMID: 35336185 PMCID: PMC8953973 DOI: 10.3390/microorganisms10030610] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Revised: 03/09/2022] [Accepted: 03/10/2022] [Indexed: 12/17/2022] Open
Abstract
Rapid industrialization has led to the pollution of soil and water by various types of contaminants. Heavy metals (HMs) are considered the most reactive toxic contaminants, even at low concentrations, which cause health problems through accumulation in the food chain and water. Remediation using conventional methods, including physical and chemical techniques, is a costly treatment process and generates toxic by-products, which may negatively affect the surrounding environment. Therefore, biosorption has attracted significant research interest in the recent decades. In contrast to existing methods, bacterial biomass offers a potential alternative for recovering toxic/persistent HMs from the environment through different mechanisms for metal ion uptake. This review provides an outlook of the advantages and disadvantages of the current bioremediation technologies and describes bacterial groups, especially extremophiles with biosorbent potential for heavy metal removal with relevant examples and perspectives.
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Wang Y, Lu Y, Lu J, Yang ZN, Yang Z. Research Progress on the Biosynthesis and Bioproduction of the Biodegradable Chelating Agent (S,S)-EDDS. Process Biochem 2022. [DOI: 10.1016/j.procbio.2022.02.025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Yi S, Li F, Wu C, Wei M, Tian J, Ge F. Synergistic leaching of heavy metal-polycyclic aromatic hydrocarbon in co-contaminated soil by hydroxamate siderophore: Role of cation-π and chelation. JOURNAL OF HAZARDOUS MATERIALS 2022; 424:127514. [PMID: 34879514 DOI: 10.1016/j.jhazmat.2021.127514] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Revised: 10/05/2021] [Accepted: 10/13/2021] [Indexed: 06/13/2023]
Abstract
Exploring a novel green efficient bioeluant is a golden key to unlock the ex-situ scale remediation of soil contaminated with heavy metals (HMs) and polycyclic aromatic hydrocarbons (PAHs). Hydroxamate siderophore (HDS) produced by Pseudomonas fluorescens HMP01, with certain hydrophobicity and strong coordination because of its special chemical structure (e.g., hydroxamic acid and dihydroxy quinoline chromophore), was used to investigate the bioleaching efficiency of HMs and PAHs from actual contaminated soils and underlying mechanisms. Results showed that leaching efficiency for HMs and PAHs from the co-contaminated soil was higher than that of single contaminated soil due to the cation-π interaction and coordination, which was closely related to the spacial configuration changes of the complex. HDS not only increased the bioleaching efficiency of cationic HMs by chelation (the leaching amount of Cd2+, Pb2+, Hg2+, Cu2+, Zn2+, and Ni2+ achieved 27.5, 110.4, 6.9, 477.7, 10,606.9, and 137.4 mg/kg HDS, respectively) but also enhanced the bioleaching amount of PAHs by solubilization (the leaching amount of phenanthrene reached 90.2 mg/kg HDS. Also, the residual HDS in soils caused no significant ecological risk. As expected, HDS is a desirable bioeluant to promote the scale application of the ex-situ remediation of soil contaminated with HMs and PAHs.
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Affiliation(s)
- Shengwei Yi
- College of Environment Science and Resources, Xiangtan University, Xiangtan 411105, PR China; Hunan Engineering Laboratory for High-Efficiency Purification Technology and its Application on Complex Heavy Metal Wastewater Treatment, Xiangtan 411105, PR China; Scientific Research Innovation Platform of Environmental Behavior and Control Principle about Novel Pollutants in Hunan Provincial Universities, Xiangtan 411105, PR China
| | - Feng Li
- College of Environment Science and Resources, Xiangtan University, Xiangtan 411105, PR China; Hunan Engineering Laboratory for High-Efficiency Purification Technology and its Application on Complex Heavy Metal Wastewater Treatment, Xiangtan 411105, PR China; Scientific Research Innovation Platform of Environmental Behavior and Control Principle about Novel Pollutants in Hunan Provincial Universities, Xiangtan 411105, PR China.
| | - Chen Wu
- College of Environment Science and Resources, Xiangtan University, Xiangtan 411105, PR China; Hunan Engineering Laboratory for High-Efficiency Purification Technology and its Application on Complex Heavy Metal Wastewater Treatment, Xiangtan 411105, PR China; Scientific Research Innovation Platform of Environmental Behavior and Control Principle about Novel Pollutants in Hunan Provincial Universities, Xiangtan 411105, PR China
| | - Ming Wei
- College of Environment Science and Resources, Xiangtan University, Xiangtan 411105, PR China; Hunan Engineering Laboratory for High-Efficiency Purification Technology and its Application on Complex Heavy Metal Wastewater Treatment, Xiangtan 411105, PR China; Scientific Research Innovation Platform of Environmental Behavior and Control Principle about Novel Pollutants in Hunan Provincial Universities, Xiangtan 411105, PR China
| | - Jiang Tian
- College of Environment Science and Resources, Xiangtan University, Xiangtan 411105, PR China; Hunan Engineering Laboratory for High-Efficiency Purification Technology and its Application on Complex Heavy Metal Wastewater Treatment, Xiangtan 411105, PR China; Scientific Research Innovation Platform of Environmental Behavior and Control Principle about Novel Pollutants in Hunan Provincial Universities, Xiangtan 411105, PR China
| | - Fei Ge
- College of Environment Science and Resources, Xiangtan University, Xiangtan 411105, PR China; Hunan Engineering Laboratory for High-Efficiency Purification Technology and its Application on Complex Heavy Metal Wastewater Treatment, Xiangtan 411105, PR China; Scientific Research Innovation Platform of Environmental Behavior and Control Principle about Novel Pollutants in Hunan Provincial Universities, Xiangtan 411105, PR China
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