Effects of biochars on the bioaccessibility of phenanthrene/pyrene/zinc/lead and microbial community structure in a soil under aerobic and anaerobic conditions

Remediation options to reduce bioaccessible and bioavailable lead and arsenic at a smelter impacted site - consideration of treatment efficacy

In this study, smelter contaminated soil was treated with various soil amendments (ferric sulfate [Fe2(SO4)3], triple superphosphate [TSP] and biochar) to determine their efficacy in immobilizing soil lead (Pb) and arsenic (As). In soils incubated with ferric sulfate (0.6M), gastric phase Pb bioaccessibility was reduced from 1939 ± 17 mg kg-1 to 245 ± 4.7 mg kg-1, while intestinal phase bioaccessibility was reduced from 194 ± 25 mg kg-1 to 11.9 ± 3.5 mg kg-1, driven by the formation of plumbojarosite. In TSP treated soils, there were minor reductions in gastric phase Pb bioaccessibility (to 1631 ± 14 mg kg-1) at the highest TSP concentration (6000 mg kg-1) although greater reductions were observed in the intestinal phase, with bioaccessibility reduced to 9.3 ± 2.2 mg kg-1. Speciation analysis showed that this was primarily driven by the formation of chloropyromorphite in the intestinal phase following Pb and phosphate solubilization in the low pH gastric fluid. At the highest concentration (10% w/w), biochar treated soils showed negligible decreases in Pb bioaccessibility in both gastric and intestinal phases. Validation of bioaccessibility outcomes using an in vivo mouse assay led to similar results, with treatment effect ratios (TER) of 0.20 ± 0.01, 0.76 ± 0.11 and 1.03 ± 0.10 for ferric sulfate (0.6M), TSP (6000 mg kg-1) and biochar (10% w/w) treatments. Results of in vitro and in vivo assays showed that only ferric sulfate treatments were able to significantly reduce As bioaccessibility and bioavailability with TER at the highest application of 0.06 ± 0.00 and 0.14 ± 0.04 respectively. This study highlights the potential application of ferric sulfate treatment for the immobilization of Pb and As in co-contaminated soils.

Biochar inoculated with Pseudomonas putida alleviates its inhibitory effect on biodegradation pathways in phenanthrene-contaminated soil

Controversial results are reported whereby biodegradation of polycyclic aromatic hydrocarbons (PAHs) can be promoted or inhibited by biochar amendment of soil. Metabolomics was applied to analyze the metabolic profiles of amendment with biochar (BB) and biochar inoculated with functional bacteria (Pseudomonas putida) (BP) involved in phenanthrene (PHE) degradation. Additionally, metagenomic analysis was utilized to assess the impact of different treatments on PHE degradation by soil microorganisms. Results indicated that BB treatment decreased the PHE biodegradation of the soil indigenous bacterial consortium, but BP treatment alleviated this inhibitory effect. Metabolomics revealed the differential metabolite 9-phenanthrol was absent in the BB treatment, but was found in the control group (CK), and in the treatment inoculated with the Pseudomonas putida (Ps) and the BP treatment. Metagenomic analysis showed that biochar decreased the abundance of the cytochrome P450 monooxygenase (CYP116), which was detected in the Pseudomonas putida, thus alleviating the inhibitory effect of biochar on PHE degradation. Moreover, a noticeable delayed increase of functional gene abundance and enzymes abundance in the BB treatment was observed in the PHE degradation pathway. Our findings elucidate the mechanism of inhibition with biochar amendment and the alleviating effect of biochar inoculated with degrading bacteria.

Effects of biochar on soil microbial communities: A meta-analysis

Changes in soil microbial communities may impact soil fertility and stability because microbial communities are key to soil functioning by supporting soil ecological quality and agricultural production. The effects of soil amendment with biochar on soil microbial communities are widely documented but studies highlighted a high degree of variability in their responses following biochar application. The multiple conditions under which they were conducted (experimental designs, application rates, soil types, biochar properties) make it difficult to identify general trends. This supports the need to better determine the conditions of biochar production and application that promote soil microbial communities. In this context, we performed the first ever meta-analysis of the biochar effects on soil microbial biomass and diversity (prokaryotes and fungi) based on high-throughput sequencing data. The majority of the 181 selected publications were conducted in China and evaluated the short-term impact (<3 months) of biochar. We demonstrated that a large panel of variables corresponding to biochar properties, soil characteristics, farming practices or experimental conditions, can affect the effects of biochar on soil microbial characteristics. Using a variance partitioning approach, we showed that responses of soil microbial biomass and prokaryotic diversity were highly dependent on biochar properties. They were influenced by pyrolysis temperature, biochar pH, application rate and feedstock type, as wood-derived biochars have particular physico-chemical properties (high C:N ratio, low nutrient content, large pores size) compared to non-wood-derived biochars. Fungal community data was more heterogenous and scarcer than prokaryote data (30 publications). Fungal diversity indices were rather dependent on soil properties: they were higher in medium-textured soils, with low pH but high soil organic carbon. Altogether, this meta-analysis illustrates the need for long-term field studies in European agricultural context for documenting responses of soil microbial communities to biochar application under diverse conditions combining biochar types, soil properties and conditions of use.

Biochar alters the persistence of PAHs in soils by affecting soil physicochemical properties and microbial diversity: A meta-analysis

Polycyclic aromatic hydrocarbons (PAHs) pollution in soil is a pervasive environmental issue worldwide. Although biochar has the potential to immobilize PAHs in soils, there remains a study gap in the use of systematic analyses to assess the effectiveness of biochar for PAH removal and the factors that affect biochar. Hence, a meta-analysis utilizing 56 published studies was aimed to assess the impact of biochar on the PAH content, soil physicochemical properties, and microbial diversity in PAH-contaminated soils and to elucidate what factors impact the capability of biochar to alter PAH persistence. With biochar application, soil Ctot PAH concentrations were significantly reduced (15.4%), while the levels of Cfree PAHs and Cbioacc PAHs were reduced by 55.6% and 46.5%, respectively. Additionally, biochar improved the physicochemical properties of PAH-contaminated soil and increased the diversity of microorganisms. Particularly, the relative abundance of PAH degraders increased significantly (43.7%), which indicated that PAH biodegradation was significantly enhanced. Soil physicochemical properties and biochar production conditions are indispensable for the study of the PAH persistence. The overall findings revealed that the pyrolysis of woody biochar at 300-500 °C was beneficial for reducing the PAH persistence in acidic, coarse, or fine and high soil organic matter content (>20 g/kg) soils.

Occurrence and spatiotemporal distribution of PAHs and OPAHs in urban agricultural soils from Guangzhou City, China

The occurrence of polycyclic aromatic hydrocarbon (PAH) derivatives in the environment is of growing concern because they exhibit higher toxicity than their parent PAHs. This study evaluated the large-scale occurrence and spatiotemporal distribution of 16 PAHs and 14 oxygenated PAHs (OPAHs) in urban agricultural soils from seven districts of Guangzhou City, China. Linear correlation analysis was conducted to explore the relationship between PAH and OPAH occurrence and a series of parameters. The compositional analysis, principal component analysis, diagnostic ratios, and principal component analysis coupled with a multiple linear regression model were used to identify the sources of PAHs and OPAHs in the soils. The average concentrations of ΣPAHs and ΣOPAHs (59.6 ± 31.1-213 ± 115.5 μg/kg) during the flood season were significantly higher than those during the dry season (42.1 ± 13.3-157.2 ± 98.2 μg/kg), which were due to relatively strong wet deposition during the flood season and weak secondary reactions during the dry season. Linear correlation analysis showed that soil properties, industrial activities, and agricultural activities (r = 0.27-0.96, p < 0.05) were responsible for the spatial distribution of PAHs during the dry season. The PAH distribution was mainly affected by precipitation during the flood season. The concentrations of ΣOPAHs were only related to the soil properties during the dry season because their occurrence was sensitive to secondary reactions, climate and meteorological conditions, and their water solubility. Our results further showed that coal combustion and traffic emissions were the dominant origins of PAHs and OPAHs during both the seasons. Wet deposition and runoff-induced transport also contributed to PAH and OPAH occurrence during the flood season. The results of this study can improve our understanding of the environmental risks posed by PAHs and OPAHs.

Bioaccessibility and Toxicity Assessment of Polycyclic Aromatic Hydrocarbons in Two Contaminated Sites

Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous soil contaminants, and their bioaccessibility determines their environmental risks in contaminated land. In the present study, the residual concentrations of PAHs in the soils of two industrial sites were determined, and their bioaccessibility was estimated by the hydroxypropyl-β-cyclodextrin extraction (HPCD) extraction method. The results showed heavy PAH contamination at both site S1 (0.38-3342.5 mg kg^-1) and site S2 (0.2-138.18 mg kg^-1), of which high molecular weight (HMW) PAHs (4-, 5-, and 6-ring compounds) accounted for approximately 80%. The average bioaccessibility of PAHs at sites S1 and S2 was 52.02% and 29.28%, respectively. The bioaccessibility of certain PAH compounds decreased with increasing ring number of the molecule. Lower PAH bioaccessibility was detected in loamy and silty soil textures than in sandy soil. Moreover, among the soil properties, the dissolved organic matter, total organic carbon, total potassium, and total manganese concentrations had significant effects on the bioaccessibility of PAHs. The toxicity analysis showed that the composition and bioaccessibility of PAHs could affect their potential toxicity in soil. We suggest that bioaccessibility should be taken into consideration when assessing the toxicity of PAHs in soil, and more attention should be given to low-ring PAHs with high bioaccessibility.

Biochar application strategies for polycyclic aromatic hydrocarbons removal from soils

Polycyclic aromatic hydrocarbons (PAHs) are known as a hazardous group of pollutants in the soil which causes many challenges to the environment. In this study, the potential of biochar (BC), as a carbonaceous material, is evaluated for the immobilization of PAHs in soils. For this purpose, various bonding mechanisms of BC and PAHs, and the strength of bonds are firstly described. Also, the effect of impressive criteria including BC physicochemical properties (such as surface area, porosity, particle size, polarity, aromaticity, functional group, etc., which are mostly the function of pyrolysis temperature), number of rings in PAHs, incubation time, and soil properties, on the extent and rate of PAHs immobilization by BC are explained. Then, the utilization of BC in collaboration with biological tools which simplifies further dissipation of PAHs in the soil is described considering detailed interactions among BC, microbes, and plants in the soil matrix. The co-effect of BC and biological remediation has been authenticated by previous studies. Moreover, recent technologies and challenges related to the application of BC in soil remediation are explained. The implementation of a combined BC-biological remediation method would provide excellent prospects for PAHs-contaminated soils.

Ball-milled biochar can act as a preferable biocompatibility material to enhance phenanthrene degradation by stimulating bacterial metabolism

The aim of this study was to evaluate the impact of different concentrations of ball-milled biochar pyrolyzed at 300-700 °C on the lethality, growth, metabolism, and degradability of gram-negative petroleum-degrading bacteria. BM-biochar was not toxic to Acinetobacter venetianus, only slowing the growth rate and extending the logarithmic phase. The ability of A. venetianus to produce extracellular polymeric substances (EPS) and biosurfactants was positive with ROS level. The highest degradation efficiency of phenanthrene (PHE) was 2.84-fold that of the control. Mechanism analysis revealed that increased EPS stimulated the adsorption of PHE and biosurfactant enhanced PHE solubility. The improved PHE biodegradability of A. venetianus through phthalic acid pathway is mainly owing to the intensify of PHE bioavailability and accessibility. These findings provide new insights into effects of BM-biochar on cellular responses and indicate that BM-biochar can act as a biocompatible material to enhance the degradation of organic pollutants.

Response of soil characteristics to biochar and Fe-Mn oxide-modified biochar application in phthalate-contaminated fluvo-aquic soils

Biochar (BC) derived from agricultural biomass is effective at immobilizing phthalate in the agricultural soil environment. In this study, we assessed the effects of 0.5%, 1%, and 2% BC and Fe-Mn oxide-modified biochar (FMBC) addition on dibutyl phthalate (DBP) and di-(2-ethylhexyl) phthalate (DEHP) residues and biochemical characteristics in the rhizosphere soil of mature wheat polluted with DBP and DEHP using a pot experiment. Scanning electron microscopy showed that the surfaces and pores of BC and FMBC adhered soil mineral particles after remediation. Therefore, DBP and DEHP residues were increased in BC- and FMBC-treated soils. Illumina HiSeq sequencing showed that, compared with the control, BC and FMBC addition significantly enhanced the relative abundance of Firmicutes and reduced Proteobacteria. The abundance of Sphenodons and Pseudomonas, which degrade phthalates, tended to be higher in FMBC-amended soils than in BC-amended and control soils. This result may be related to an increase in available nutrients and organic matter following BC and FMBC application. Subsequently, the changes in soil bacterial abundance and community structure induced an increase in polyphenol oxidase, β-glucosidase, neutral phosphatase, and protease activity in BC and FMBC remediation. In comparison with the BC treatment, FMBC addition had a significantly positive effect on enzyme activity, and the microbial structure and was therefore more effective at immobilizing DBP and DEHP in the soil. Thus, our findings strongly suggest that FMBC is a reliable remediation material for phthalate-contaminated soil.

Active iron species driven hydroxyl radicals formation in oxygenation of different paddy soils: Implications to polycyclic aromatic hydrocarbons degradation

The frequently occurring redox fluctuations in paddy soil are critical to the cycling of redox-sensitive elements (e.g., iron (Fe) and carbon) due to the driving of microbial processes. However, the associated abiotic process, such as hydroxyl radical (^•OH) formation, was rarely investigated. Hence, we examined the under-appreciated role of ^•OH formation in driving polycyclic aromatic hydrocarbons (PAHs) degradation upon oxygenation of anoxic paddy slurries. Results showed that ^•OH production largely differed in different paddy slurries, in the range of 271.5-581.2 μmol kg^-1 soil after 12 h reaction. The ^•OH production was highly hinged on the contents of active Fe species, i.e., exchangeable, surface-bound Fe and Fe in low-crystalline phases rather than Fe in high-crystalline minerals or silicates. Besides, ^•OH production significantly decreased with increasing soil depth due to the declined active Fe species and abundance of functional microbes. Oxygenation also induced the transformation of these active Fe species into the low- and high-crystalline phases, which might affect the following redox process. The produced ^•OH can efficiently degrade PAHs with degradation extents depending on their physiochemical properties. Our findings highlight the key roles of active Fe species in driving ^•OH formation and organic contaminants degradation during redox fluctuations of paddy soils.

Responses of phenanthrene degradation to the changes in bioavailability and microbial community structure in soils amended with biochars pyrolyzed at low and high temperatures

This study investigated the impact of wheat straw biochars pyrolyzed at temperatures of 100-700 ℃ (BC100-BC700) on biodegradation of phenanthrene in soils. During a 42-day experiment, biochar amendment reduced the biodegradation ratio of phenanthrene in soils by no change-77.0%. The biodegradation ratio decreased with the increase of pyrolysis temperature from 100 to 400 ℃ and then increased with the increase of pyrolysis temperature from 400 to 700 ℃, exhibiting a U-shape. Meanwhile, desorbing fraction of phenanthrene extracted by n-butanol declined with increasing pyrolysis temperature. Biochar-derived dissolved organic carbon (DOC) obviously influenced the soil DOC contents which were negatively correlated with the total relative abundances of dominant polycyclic aromatic hydrocarbon (PAH)-degraders. These results indicated that in soils amended with biochars pyrolyzed at low temperatures (i.e. 100-400 ℃), both the reduced bioavailability of phenanthrene and the reduced PAH-degrader abundance resulted in decreasing phenanthrene degradation with pyrolysis temperature. In soils amended with biochars pyrolyzed at high temperatures (i.e. 500-700 ℃; HT-biochars), two possible reasons contribute to increasing phenanthrene degradation with pyrolysis temperature: (1) high sorbed-phenanthrene concentration due to large specific surface area and high aromaticity of the biochars, and (2) the increased dominant PAH-degrader abundance for the removal of sorbed-phenanthrene due to the impact of HT-biochars on soil properties (mainly on DOC content).

Biochar applications combined with paddy-upland rotation cropping systems benefit the safe use of PAH-contaminated soils: From risk assessment to microbial ecology

This study aimed to establish a method allowing the safe use of polycyclic aromatic hydrocarbon (PAH)-contaminated soils through the combination of biochar applications and different cropping systems. The impact of biochar applications under different cropping systems on the human health risks of PAHs and soil microbiology was elucidated. The residual PAHs were the lowest in rhizosphere soils amended with 2% corn straw-derived biochar pyrolyzed at 300 °C (CB300) under the paddy-upland rotation cropping (PURC) system. Human health risks resulting from the ingestion of PAH-contaminated carrot roots / rice grains under the PURC system were significantly lower than those under continuous upland cropping systems. The greatest diversity, richness and network complexity of soil microbial communities occurred under the PURC system combined with the 2% CB300 treatment. Soil microbial functions associated with soil health and PAH biodegradation were enhanced under this strategy, while the pathogen group was inhibited. Primarily owing to its high sorption capacity, bamboo-derived biochar pyrolyzed at 700 °C realized in the reduction of PAHs, but weakly influenced shifts in soil microbial communities. Overall, the combination of PURC systems and low-temperature-pyrolyzed nutrient-rich biochar could efficiently reduce the human health risks of PAHs and improve soil microbial ecology in agricultural fields.

Contribution of phenanthrene in different binding sites to its biodegradation in biochar-amended soils

Biochars can strongly sorb hydrophobic organic contaminants in soils. However, contribution of contaminants in different binding sites to their biodegradation in biochar-amended soils is not clear. In this work, wheat straw biochars were prepared at pyrolysis temperatures of 400 °C (BC400) and 700 °C (BC700). During a 42-day experiment, degradation rate constant of phenanthrene in soils was in the order of treatment without biochar (1.64 × 10-2 d-1) > treatment with BC700 (0.96 × 10-2 d-1) > treatment with BC400 (0.30 × 10-2 d-1). At the beginning, amendment of BC400 and BC700 reduced the rapidly desorbing fraction of phenanthrene in soils by 44.8% and 92.5%, respectively. At the end, both phenanthrene and microbial biomass highly concentrated on the biochar separated from soils. The results of a coupled model of desorption and biodegradation revealed that only phenanthrene in rapidly desorbing sites was degraded in BC400-amended soils, whereas degradation of phenanthrene in both rapidly and slowly desorbing sites occurred in BC700-amended soils, contributing 24.4% and 75.6% of the degradation, respectively. High fraction (>95%) of biodegradable phenanthrene in slowly desorbing sites was the key reason for higher biodegradation rate of phenanthrene in soils with BC700 than in soils with BC400.

Ex situ evaluation of the effects of biochars on environmental and toxicological availabilities of metals and polycyclic aromatic hydrocarbons

The present study experimented five biochars, one made from wood (400 °C, 12 h) and four made from miscanthus cultivated on contaminated soils (temperature 400/600 °C, duration 45/90 min). They were used as amendments at a 2% application rate on soil, cultivated or not cultivated with ryegrass, contaminated with (i) metals (Cd, Pb, and Zn), (ii) eight polycyclic aromatic hydrocarbons (PAHs), and (iii) a mix of metals and PAHs. The objectives were (i) to compare the effectiveness of the five biochars on soil parameters and pollutant availability and (ii) to determine the influence of soil multicontamination and ryegrass cultivation on biochar effectiveness. The results showed that biochar application did not necessarily lead to lower pollutant extractability and metal bioaccessibility. However, differences were highlighted between the biochars. The miscanthus biochars produced at 600 °C (BM600) showed higher effectiveness at decreasing metal extractability than the miscanthus biochars produced at 400 °C (BM400) due to its better sorption characteristics. In addition, ryegrass cultivation did not impact pollutant availability but modified metal bioaccessibility, especially for the soil amended with the BM600 and the woody biochar. Moreover, the presence of PAHs also negatively impacted the metal bioaccessibility in the soil amended with the BM600, and, on the contrary, positively impacted it in the soil amended with the BM400. Complementary studies are therefore necessary to understand the mechanisms involved, particularly in a context where soils requiring remediation operations are often multicontaminated and vegetated.

Biodegradation of Phenanthrene and Heavy Metal Removal by Acid-Tolerant Burkholderia fungorum FM-2

Phenanthrene (PHE) is a common pollutant of acidic and non-acidic environments that is recalcitrant to biodegradation. Herein, Burkholderia fungorum FM-2 (GenBank accession no. KM263605) was isolated from oil-contaminated soil in Xinjiang and characterized morphologically, physiologically, and phylogenetically. Environmental parameters including PHE concentration, pH, temperature, and salinity were optimized, and heavy metal tolerance was investigated. The MIC of strain FM-2 tolerant to Pb(II) and Cd(II) was 50 and 400 mg L⁻¹, respectively, while the MIC of Zn(II) was >1,200 mg L⁻¹. Atypically for a B. fungorum strain, FM-2 utilized PHE (300 mg L⁻¹) as a sole carbon source over a wide pH range (between pH 3 and 9). PHE and heavy metal metabolism were assessed using gas chromatography (GC), inductively coupled plasma optical emission spectroscopy (ICP-OES), scanning electron microscopy-energy dispersive X-ray spectroscopy (SEM-EDS), Fourier-transform infrared (FTIR) spectroscopy and ultraviolet (UV) absorption spectrometry. The effects of heavy metals on the bioremediation of PHE in soil were investigated, and the findings suggest that FM-2 has potential for combined bioremediation of soils co-contaminated with PHE and heavy metals.