Transcriptome profiling of genes differentially modulated by sulfur and chromium identifies potential targets for phytoremediation and reveals a complex S-Cr interplay on sulfate transport regulation in B. juncea

Phytoremediation: a transgenic perspective in omics era

Phytoremediation is an environmental safety strategy that might serve as a viable preventative approach to reduce soil contamination in a cost-effective manner. Using plants to remediate pollution from the environment is referred to as phytoremediation. In the past few decades, plants have undergone genetic manipulation to overcome inherent limitations by using genetically modified plants. This review illustrates the eco-friendly process of cleaning the environment using transgenic strategies combined with omics technologies. Herbicides tolerance and phytoremediation abilities have been established in genetically modified plants. Transgenic plants have eliminated the pesticides atrazine and metolachlor from the soil. To expand the application of genetically engineered plants for phytoremediation process, it is essential to test strategies in the field and have contingency planning. Omics techniques were used for understanding various genetic, hormonal, and metabolic pathways responsible for phytoremediation in soil. Transcriptomics and metabolomics provide useful information as resources to understand the mechanisms behind phytoremediation. This review aims to highlight the integration of transgenic strategies and omics technologies to enhance phytoremediation efficiency, emphasizing the need for field testing and comprehensive planning for successful implementation.

Brassica juncea and the Se-hyperaccumulator Stanleya pinnata exhibit a different pattern of chromium and selenium accumulation and distribution while activating distinct oxidative stress-response signatures

Soils high in chromium and selenium exist in some countries, like China, India and the US. In the forms of chromate and selenate, these elements can compete during uptake by plants and lead to secondary effects on the absorption of the essential nutrient sulfur. In this study, we evaluated the potential of Brassica juncea and the Se-hyperaccumulator Stanleya pinnata to take-up and store chromium and selenium when applied individually or jointly, the effect on sulfur content, and the plant antioxidant responses. The aim is to advise the best use of these species in phytotechnologies. Plants were grown hydroponically with 50 μM chromate, 50 μM selenate and equimolar concentrations of both elements (50 μM chromate + 50 μM selenate). Our results suggest that B. juncea and S. pinnata possess transport systems with different affinity for chromate and selenate. The joint application of chromate and selenate restricted the accumulation of both elements, but the reduction of selenate uptake by chromate was more evident in B. juncea. On the other hand, selenate decreased chromium accumulation in B. juncea, whereas in S. pinnata such effect was evident only in roots. B. juncea plants stored more chromium and selenium than S. pinnata due to the higher biomass produced, but less selenium when treated with both elements. Chromate and selenate decreased sulfur accumulation in both species, but B. juncea was more sensitive to their toxicity when applied individually, as revealed by increased lipid peroxidation, hydrogen peroxide content in roots and antioxidant enzyme activity. This species can still be efficient for chromium and selenium phytoextraction as these elements in soil are less available than in hydroponics. In soils high in both elements, or low in selenium, S. pinnata is preferred for selenium phytoextraction and the biomass could be used for crop biofortification due its negligible chromium content.

Biomass production and uptake of sulfur, chromium and micronutrients by Tanzania guinea grass grown with sulfur and chromium

Soil contamination caused by improper waste disposal can affect plant growth. Tropical forage plants have rapid growth, high biomass production and vigorous regrowth. Chromium (Cr) is one of the most common contaminants in the environment. Sulfur (S) is a nutrient involved in various cell detoxification processes. The objective was to assess the effects of excess Cr on biomass production and concentrations of this metal, S and cationic micronutrients, under conditions of varying supply of S for Tanzania guinea grass. The experiment was conducted in randomized complete blocks in a 3 × 4 factorial scheme, corresponding to three levels of S (0.1, 1.9 and 3.7 mmol L^-1) and four levels of Cr (0.0, 0.5, 1.0 and 2.0 mmol L^-1) in three replicates. Root surface area, shoot and root biomass production, concentrations of total S, sulfate-S, Cr and cationic micronutrients, and Cr transport factor were determined. S level of 1.9 mmol L^-1 reduced the toxicity by Cr in Tanzania guinea grass, expressed by the higher shoot and root dry weight production, greater stability in the cellular concentration of sulfate-S and higher concentrations of micronutrients. It was concluded that the high availability of S reduced the toxicity by Cr(VI) in Tanzania guinea grass, expressed by the higher shoot and root dry weight production, greater stability in the cellular concentration of sulfate-S and higher concentration of micronutrients in the grass shoots.

Ethylene needs endogenous hydrogen sulfide for alleviating hexavalent chromium stress in Vigna mungo L. and Vigna radiata L

Chromium toxicity to crops is a big scientific issue of the present time. Thus, continuous scientific attempts have been taken for reducing chromium toxicity in crop plants. In this study, we have tested potential of ethylene (ET) and hydrogen sulfide (H₂S) in alleviating hexavalent chromium [(Cr(VI)] stress in two pulse crops i.e. black bean and mung bean. Cr(VI) declined growth (by 21 % and 27 % in black and mung bean, respectively) and also negatively affected photosynthesis in both pulse crops due to accumulation of Cr(VI) and cell death in roots. Under similar conditions, levels of reactive oxygen species (ROS) were enhanced but antioxidant defense system showed differential responses. The addition of AVG (an inhibitor of ethylene biosynthesis) and PAG (an inhibitor of H₂S biosynthesis) with Cr(VI) further increased toxicity of Cr(VI) suggesting that endogenous H₂S and ET are important for tolerating Cr(VI) toxicity. But supplementation of either ET or H₂S alleviated Cr(VI) toxicity. Interestingly, ET did not rescue negative effects of PAG under Cr(VI) stress but NaHS rescued negative effect of AVG. Overall, results indicate that though both ET and H₂S are able in alleviating Cr(VI) stress but endogenous H₂S is crucial in ET-mediated mitigation of Cr(VI) stress. Furthermore, H₂S appears to be a downstream signal of ET in alleviating Cr(VI) stress in two pulse crops.

Enhancing phytoremediation of hazardous metal(loid)s using genome engineering CRISPR-Cas9 technology

Rapid and drastic changes in the global climate today have given a strong impetus to developing newer climate-resilient phytoremediation approaches. These methods are of great public and scientific importance given the urgency of this environmental crisis. Climate change has adverse effects on the growth, outputs, phenology, and overall productivity of plants. Contamination of soil with metal(loid)s is a major worldwide problem. Some metal(loids) are carcinogenic pollutants that have a long half-life and are non-degradable in the environment. There are many instances of the potential link between chronic heavy metal exposure and human disease. The adaptation of plants in the changing environment is, however, a major concern in phytoremediation practice. The creation of climate-resistant metal hyperaccumulation plants using molecular techniques could provide new opportunities to mitigate these problems. Consequently, advancements in molecular science would accelerate our knowledge of adaptive plant remediation/resistance and plant production in the context of global warming. Genome modification using artificial nucleases has the potential to enhance phytoremediation by modifying genomes for a sustainable future. This review focuses on biotechnology to boost climate change tolerant metallicolous plants and the future prospects of such technology, particularly the CRISPR-Cas9 genome editing system, for enhancing phytoremediation of hazardous pollutants.

Selenium(Ⅳ) alleviates chromium(Ⅵ)-induced toxicity in the green alga Chlamydomonas reinhardtii

The wide range of industrial applications of chromium (Cr) has led to an increasing risk of water contamination by Cr(Ⅵ). However, efficient methods to remove or decrease the toxicity of Cr(Ⅵ) in situ are lacking. The main aim of this study was to investigate the mechanisms by which selenite alleviates chromium(Ⅵ)-induced toxicity in Chlamydomonas reinhardtii. Our results showed that K₂Cr₂O₇ had toxic effects on both the structure and physiology of C. reinhardtii in a dose-dependent manner. Adding selenite significantly alleviated chromium accumulation and toxicity in cells. RNA-seq data showed that the expression level of selenoproteins such as SELENOH was significantly increased. Both SELENOH-amiRNA knockdown mutants and selenoh insertional mutant produced more reactive oxygen species (ROS) and grew slower than the wild type, suggesting that SELENOH can reduce chromium toxicity by decreasing the levels of ROS produced by Cr(Ⅵ). We also demonstrated that selenite can reduce the absorption of Cr(Ⅵ) by cells but does not affect the process of Cr(Ⅵ) adsorption and efflux. This information on the molecular mechanism by which selenite alleviates Cr(Ⅵ) toxicity can be used to increase the bioremediation capacity of algae and reduce the human health risks associated with Cr(Ⅵ) toxicity.

Sulfur mediated improved thiol metabolism, antioxidant enzymes system and reduced chromium accumulation in oilseed rape (Brassica napus L.) shoots

Chromium (Cr) pollution is at a worrying level in a region of oilseed rape production in China. Sulfur (S) is an indispensable element for plants that has been confirmed to play an important role in regulating plant response to heavy metal stress. The present study was conducted to examine the role of S in alleviating Cr toxicity in oilseed rape. Cr stress strongly induced oxidative stress and inhibited plant growth. Application of S significantly enhanced the tolerance of oilseed rape exposed to Cr stress by activating several detoxification mechanisms including the ascorbate-glutathione (AsA-GSH) enzyme defense system and GSH production. The Cr and phytochelatins (PC) contents in the root under S treatment were markedly higher than those under Cr stress. The transcript abundances of the heavy metal transporters HMA2 and HMA4 were lower under S treatment than under Cr treatment. Most Cr was restricted to roots, and the translocation factor (TF) of Cr was markedly decreased in oilseed rape. In conclusion, our study revealed that S application is advantageous to oilseed rape defense against Cr toxicity and inhibits Cr translocation from roots to shoots.

Chromium tolerance, bioaccumulation and localization in plants: An overview

In the current industrial scenario, chromium (Cr) as a metal is of great importance, but poses a major threat to the environment. Phytoremediation provides an environmentally sustainable, ecofriendly, cost effective approach for environmental cleanup of Cr. This review presents the current status of phytoremediation research with particular emphasis on cleanup of Cr contaminated soil and water systems. It gives a detailed account of the work done by different authors on the Cr bioavailability, uptake pathway, toxicity and storage in plants following the phytoextraction mechanism. This paper also describes recent findings related to Cr localization in hyperaccumulator plants. It gives an insight into the processes and mechanisms that allow plants to remove Cr from contaminated sites under varying conditions. These detailed knowledge of changes in plant metabolic pool in response to Cr stress would immensely help understand and improve the phytoextraction process. Further, this review provides a detailed understanding of Cr uptake and detoxification mechanism by plants that can be applied in developing a suitable approach for a better applicability of the process.

Kinetics, biochemical and factorial analysis of chromium uptake in a multi-ion system by Tradescantia pallida (Rose) D. R. Hunt

Discharge of wastewater from electroplating and leather industries is a major concern for the environment due to the presence of toxic Cr⁶⁺ and other ions, such as sulfate, nitrate, phosphate, etc. This study evaluated the potential of Tradescantia pallida, a plant species known for its Cr bioaccumulation, for the simultaneous removal of Cr⁶⁺, SO₄^2-, NO₃^-, and PO₄^3-. The effect of different co-ions on Cr⁶⁺ removal by T. pallida was examined following the Plackett-Burman design of experiments carried out under batch hydroponics conditions. The results revealed a maximum removal of 84% Cr⁶⁺, 87% SO₄^2-, 94% NO₃^- and 100% PO₄^3- without any phytotoxic effect on the plant for an initial Cr⁶⁺ concentration in the range 5-20 mg L^-1. SO₄^2- and NO₃^- enhanced Cr uptake at a high initial Cr concentration (20 mg L^-1), whereas PO₄^3- did not affect Cr uptake both at high and low initial Cr concentrations. The Cr⁶⁺ removal kinetics in the presence of different ions was well described by the pseudo-second-order kinetic model which revealed that both biosorption and bioaccumulation of the metal played an important role in Cr⁶⁺ removal. Increase in the total carbohydrate and protein content of the plant following Cr⁶⁺ and co-ions exposure indicated a good tolerance of the plant toward Cr⁶⁺ toxicity. Furthermore, enhancement in the lipid peroxidation and catalase activity in T. pallida upon Cr⁶⁺ exposure revealed a maximum stress-induced condition in the plant. Overall, this study demonstrated a very good potential of the plant T. pallida for Cr⁶⁺ removal from wastewater even in the presence of co-ions.

Differential physiological responses of two Salvinia species to hexavalent chromium at a glance

In plants of Salvinia rotundifolia and Salvinia minima the effect of two Cr(VI) concentrations (5 and 20mgL(-1)) applied for 7days was assessed by measuring changes in biomass, photosynthetic pigments, Cr accumulation, malondialdehyde (MDA), membrane stability index (MSI), thiols (TT, NPT and PBT), and phenolics (SP and IP). Biomass in S. minima was decreased at highest Cr(VI) concentration, but there were no changes in S. rotundifolia. Metal accumulation was different in both species. S. minima accumulates more metal in fronds, but S. rotundifolia accumulates more metal in lacinias. Results also showed that S. minima translocates more Cr to fronds than S. rotundifolia, but at the whole plant level higher accumulation occurred in this last. Tolerance index (Ti) was higher in S. rotundifolia. Chl b and carotenoids were decreased only upon exposure to high Cr(VI) concentration in both species. Cr(VI) treatment did not enhance MDA accumulation. Cr exposure had no impact on MSI values when comparing with Cr-untreated values. Thiols in fronds and lacinias showed different distribution patterns between species. IP and NPT were higher in S. rotundifolia lacinias that accumulate more Cr than S. minima lacinias. Whilst SP and NPT were higher in S. minima fronds compared with S. rotundifolia ones. This may indicate that these species can cope with Cr(VI) toxicity, either through metal complexation and/or metal reduction or by the scavenging of ROS derived from Cr-induced oxidative stress. Based on Cr accumulation and biomass production, S. rotundifolia seems more suitable to remove Cr(VI) from polluted waters.

Sulfate and chromate increased each other's uptake and translocation in As-hyperaccumulator Pteris vittata

We investigated the effects of chromate (CrVI) and sulfate on their uptake and translocation in As-hyperaccumulator Pteris vittata. Plants were exposed to 1) 0.1 mM CrVI and 0, 0.25, 1.25 or 2.5 mM sulfate or 2) 0.25 mM sulfate and 0, 0.5, 2.5 or 5.0 mM CrVI for 1 d in hydroponics. P. vittata accumulated 26 and 1261 mg kg(-1) Cr in the fronds and roots at CrVI0.1, and 2197 and 1589 mg kg(-1) S in the fronds and roots at S0.25. Increasing sulfate concentrations increased Cr root concentrations by 16-66% and helped CrVI reduction to CrIII whereas increasing CrVI concentrations increased frond sulfate concentrations by 3-27%. Increasing sulfate concentrations enhanced TBARS concentrations in the biomass, indicating oxidative stress caused lipid peroxidation in plant cell membranes. However, addition of 0.25-2.5 mM sulfate alleviated CrVI's toxic effects and decreased TBARS from 23.5 to 9.46-12.3 μmol g(-1) FW. Though CrVI was supplied, 78-96% of CrIII was in the biomass, indicating efficient CrVI reduction to CrIII by P. vittata. The data indicated the amazing ability of P. vittata in Cr uptake at 289 mg kg(-1) h(-1) with little translocation to the fronds. These results indicated that P. vittata had potential in Cr phytoremediation in contaminated sites but further studies are needed to evaluate this potential. The facts that CrVI and sulfate helped each other in uptake by P. vittata suggest that CrVI was not competing with sulfate uptake in P. vittata. However, the mechanisms of how sulfate and CrVI enhance each other's accumulation in P. vittata need further investigation.

Proteomic analysis of chromium stress and sulfur deficiency responses in leaves of two canola (Brassica napus L.) cultivars differing in Cr(VI) tolerance

Sulfur (S) is an essential macronutrient for plant growth and development, and it plays an essential role in response to environmental stresses. Plants suffer with combined stress of S deficiency and hexavalent chromium [Cr(VI)] in the rhizosphere. Little is known about the impact of S deficiency on leaf metabolism of canola (Brassica napus L.) under Cr(VI) stress. Therefore, this study is the first to examine the effects of Cr(VI) stress and S deficiency in canola at a molecular level. A comparative proteomic approach was used to investigate the differences in protein abundance between Cr-tolerant NK Petrol and Cr-sensitive Sary cultivars. The germinated seeds were grown hydroponically in S-sufficient (+S) nutrient solution for 7 days and then subjected to S-deficiency (-S) for 7 days. S-deficient and +S seedlings were then exposed to 100μM Cr(VI) for 3 days. Protein patterns analyzed by two-dimensional electrophoresis (2-DE) revealed that 58 protein spots were differentially regulated by Cr(VI) stress (+S/+Cr), S-deficiency (-S/-Cr) and combined stress (-S/+Cr). Of these, 39 protein spots were identified by MALDI-TOF/TOF mass spectrometry. Differentially regulated proteins predominantly had functions not only in photosynthesis, but also in energy metabolism, stress defense, protein folding and stabilization, signal transduction, redox regulation and sulfur metabolism. Six stress defense related proteins including 2-Cys peroxiredoxin BAS1, glutathione S-transferase, ferritin-1, l-ascorbate peroxidase, thiazole biosynthetic enzyme and myrosinase-binding protein-like At3g16470 exhibited a greater increase in NK Petrol. The stress-related proteins play an important role in the detoxification of Cr(VI) and maintaining cellular homeostasis under variable S nutrition.

Characterization of long non-coding RNAs involved in cadmium toxic response in Brassica napus

There is increasing evidence of long non-coding RNA (lncRNA) involvement in a variety of biological responses to environmental stresses.

Citric acid enhances the phytoextraction of chromium, plant growth, and photosynthesis by alleviating the oxidative damages in Brassica napus L

Chromium (Cr) toxicity is widespread in crops grown on Cr-contaminated soils and has become a serious environmental issue which requires affordable strategies for the remediation of such soils. This study was performed to assess the performance of citric acid (CA) through growing Brassica napus in the phytoextraction of Cr from contaminated soil. Different Cr (0, 100, and 500 μM) and citric acid (0, 2.5, and 5.0 mM) treatments were applied alone and in combinations to 4-week-old seedlings of B. napus plants in soil under wire house condition. Plants were harvested after 12 weeks of sowing, and the data was recorded regarding growth characteristics, biomass, photosynthetic pigments, malondialdehyde (MDA), electrolytic leakage (EL), antioxidant enzymes, and Cr uptake and accumulation. The results showed that the plant growth, biomass, chlorophyll contents, and carotenoid as well as soluble protein concentrations significantly decreased under Cr stress alone while these adverse effects were alleviated by application of CA. Cr concentration in roots, stem, and leaves of CA-supplied plant was significantly reduced while total uptake of Cr increased in all plant parts with CA application. Furthermore, in comparison with Cr treatments alone, CA supply reduced the MDA and EL values in both shoots and roots. Moreover, the activity of superoxide dismutase (SOD), guaiacol peroxidase (POD), catalase (CAT), and ascorbate peroxidase (APX) in shoots and roots markedly increased by 100 μM Cr exposure, while decreased at 500 μM Cr stress. CA application enhanced the activities of antioxidant enzymes compared to the same Cr treatment alone. Thus, the data indicate that exogenous CA application can increase Cr uptake and can minimize Cr stress in plants and may be beneficial in accelerating the phytoextraction of Cr through hyper-accumulating plants such as B. napus.

Interactive effects of sulfur and chromium on antioxidative defense systems and BnMP1 gene expression in canola (Brassica napus L.) cultivars differing in Cr(VI) tolerance

Plants suffer with combined stress of sulfur (S) deficiency and hexavalent chromium [Cr(VI)] in soils. There are a few reports on the interactive effects of S-deficiency and Cr(VI) stress. Therefore, the interactions between S nutrition and Cr(VI) stress were investigated in hydroponically grown canola (Brassica napus L.) cultivars differing in Cr(VI) tolerance. The relatively Cr(VI)-tolerant (NK Petrol) and Cr(VI)-susceptible (Sary) cultivars were grown in S-sufficient nutrient solution and then exposed to variable S concentrations [deficient (0 mM S, -S) and sufficient (1 mM S, +S)]. The seedlings were then exposed to 100 μM Cr(VI) for 3 days. S-deficiency (-S/-Cr) and combined stress (-S/+Cr) caused a significant decrease in growth parameters of Sary than NK Petrol (P < 0.05). In -S/+Cr treatment, Cr accumulation in Sary was significantly higher than NK Petrol. The higher level of Cr in Sary increased lipid peroxidation and decreased chlorophyll content. The activities of antioxidant enzymes and cysteine content were significantly higher in NK Petrol than in Sary under combined stress. The levels of ascorbate (AsA) and glutathione (GSH) were significantly decreased by S deficiency. The expression level of metallothionein gene (BnMP1) in the tolerant NK Petrol was increased by -S/+Cr treatment. However, expression level of BnMP1 gene in the susceptible Sary was enhanced by +S/+Cr treatment. This result suggests metallothionein (MT) may be involved in Cr(VI) tolerance under S-deficient condition. In conclusion, S nutrition influenced Cr accumulation and enhanced tolerance caused by a positive effect on defense systems and gene expression.

Effects of phosphate and thiosulphate on arsenic accumulation in the species Brassica juncea

Arsenic (As) is recognized as a toxic pollutant in soils of many countries. Since phosphorus (P) and sulphur (S) can influence arsenic mobility and bioavailability, as well as the plant tolerance to As, phytoremediation techniques employed to clean-up As-contaminated areas should consider the interaction between As and these two nutrients. In this study, the bioavailability and accumulation of arsenate in the species Brassica juncea were compared between soil system and hydroponics in relation to P and S concentration of the growth substrate. In one case, plants were grown in pots filled with soil containing 878 mg As kg(-1). The addition of P to soil resulted in increased As desorption and significantly higher As accumulation in plants, with no effect on growth. The absence of toxic effects on plants was likely due to high S in soil, which could efficiently mitigate metal toxicity. In the hydroponic experiment, plants were grown with different combinations of As (0 or 100 μM) and P (56 or 112 μM). S at 400 μM was also added to the nutrient solution of control (-As) and As-treated plants, either individually or in combination with P. The addition of P reduced As uptake by plants, while high S resulted in higher As accumulation and lower P content. These results suggest that S can influence the interaction between P and As for the uptake by plants. The combined increase of P and S in the nutrient solution did not lead to higher accumulation of As, but enhanced As translocation from the root to the shoot. This aspect is of relevance for the phytoremediation of As-contaminated sites.

Chromate and phosphate inhibited each other's uptake and translocation in arsenic hyperaccumulator Pteris vittata L

We investigated the effects of chromate (CrVI) and phosphate (P) on their uptake and translocation in As-hyperaccumulator Pteris vittata (PV). Plants were exposed to 1) 0.10 mM CrVI and 0, 0.25, 1.25, or 2.50 mM P or 2) 0.25 mM P and 0, 0.50, 2.5 or 5.0 mM CrVI for 24 h in hydroponics. PV accumulated 2919 mg/kg Cr in the roots at CrVI₀.₁₀, and 5100 and 3500 mg/kg P in the fronds and roots at P₀.₂₅. When co-present, CrVI and P inhibited each other's uptake in PV. Increasing P concentrations reduced Cr root concentrations by 62-82% whereas increasing CrVI concentrations reduced frond P concentrations by 52-59% but increased root P concentrations by 11-15%. Chromate reduced P transport, with more P being accumulated in PV roots. Though CrVI was supplied, 64-78% and 92-93% CrIII were in PV fronds and roots. Based on X-ray diffraction, Cr₂O₃ was detected in the roots confirming CrVI reduction to CrIII by PV. In short, CrVI and P inhibited each other in uptake and translocation by PV, and CrVI reduction to CrIII in PV roots served as its detoxification mechanism. The finding helps to understand the interactions of P and Cr during their uptake in PV.