Remediation of soil polluted with HMW-PAHs by alfalfa or brome in combination with fungi and starch

Insight into the effect of electric fields on bioremediation of petroleum-contaminated soil: A micro-ecological response

The voltage gradient plays a crucial role in the process of electro-bioremediation for petroleum-contaminated soil. However, the micro-ecological response mechanisms of relevance have been scarcely documented. This study compared petroleum degradation characteristics, soil physicochemical properties, and bacterial microbiome indicators under 0.5 V cm-1, 1 V cm-1, and 2 V cm-1 conditions to elucidate the interaction mechanism among soil micro-ecological factors. The findings indicated that the treatment at 1 V cm-1 resulted in the most effective synergistic enhancement of electrokinetics and bioremediation, yielding a peak petroleum degradation ratio of 43.54 ± 1.64% over 105 days. The improvement in biodegradation resulted from the direct stimulation of bio-metabolism by higher ratios of "window condition" (RWC, 0.5331) and the indirect sustenance of microbial physiological activity by favorable soil conditions. The 1 V cm-1 voltage gradient either maintained or fostered the soil microbiome's response to the remediation system. The structural equation models (SEMs) demonstrated that variations in microbiome properties across different voltage gradients resulted from the influences of effective current intensity, soil pH, redox potential (Eh), dissolved organic carbon (DOC), and electrical conductivity (EC). Optimizing voltage gradients is a practical approach for developing effective micro-ecosystems to efficiently remediate petroleum-contaminated soil and implement electro-bioremediation in various engineering applications.

Variations of microbiota and metabolites in rhizosphere soil of Carmona microphylla at the co-contaminated site with polycyclic aromatic hydrocarbons and heavy metals

Co-contamination with organic/inorganic compounds is common in industrial area and poses a great risk to local soil ecological environment. In this study, an operating ink factory site co-contaminated with polycyclic aromatic hydrocarbons (PAHs, mild to moderate pollution level) and heavy metals (HMs, heavy pollution level) was selected and screened for native vegetation, Carmona microphylla. High-throughput sequencing and metabolomics were mainly used to investigate the responses of soil bacteria and metabolites to the composite pollution and rhizosphere effect. As the results showed, among three pollution levels, a medium level of pollution was favorable to increase the richness and diversity of soil bacterial community, while high level of pollution greatly decreased special OTUs number. In addition, HMs were the most significant factors driving bacterial community structure, especially for Cd. The influence of medium molecular weight PAHs with 4 rings (MMW-PAHs) on dominant bacteria was greater than low molecular weight PAHs with 2-3 rings (LMW-PAHs) and high molecular weight PAHs with 5-6 rings (HMW-PAHs). Soil bacterial function was affected mainly by pollution level, but not rhizosphere effect, in which high pollution level changed α diversity and structure and composition of C- and N-cycling bacteria. Rhizosphere promoted network complexity by increasing the connection densities among bacterial communities, metabolites, soil properties and the involved number of metabolites. Compared to HMs, PAHs played a more important role in shaping bacterial community through affecting metabolites in non-rhizosphere soil, which was different from rhizosphere soil with a more significant effect of HMs than PAHs. Some key bacterial taxa have established resistance to HMs in rhizosphere soils, whereas they were sensitive to compound contamination in non-rhizosphere soils. Some key bacterial taxa are resistant to HMs in rhizosphere soils, whereas they are susceptible to complex contamination in non-rhizosphere soils, which could be a consequence of the rhizosphere by regulating soil metabolism. It also provides a valuable reference for how co-contaminants and rhizosphere effect shape together soil bacterial community through the changes of soil metabolites.

Polycyclic aromatic hydrocarbon: underpinning the contribution of specialist microbial species to contaminant mitigation in the soil

The persistence of PAHs poses a significant challenge for conventional remediation approaches, necessitating the exploration of alternative, sustainable strategies for their mitigation. This review underscores the vital role of specialized microbial species (nitrogen-fixing, phosphate-solubilizing, and biosurfactant-producing bacteria) in tackling the environmental impact of polycyclic aromatic hydrocarbons (PAHs). These resistant compounds demand innovative remediation strategies. The study explores microbial metabolic capabilities for converting complex PAHs into less harmful byproducts, ensuring sustainable mitigation. Synthesizing literature from 2016 to 2023, it covers PAH characteristics, sources, and associated risks. Degradation mechanisms by bacteria and fungi, key species, and enzymatic processes are examined. Nitrogen-fixing and phosphate-solubilizing bacteria contributions in symbiotic relationships with plants are highlighted. Biosurfactant-producing bacteria enhance PAH solubility, expanding microbial accessibility for degradation. Cutting-edge trends in omics technologies, synthetic biology, genetic engineering, and nano-remediation offer promising avenues. Recommendations emphasize genetic regulation, field-scale studies, sustainability assessments, interdisciplinary collaboration, and knowledge dissemination. These insights pave the way for innovative, sustainable PAH-contaminated environment restoration.

Anaerobic biodegradation of pyrene and benzo[a]pyrene by a new sulfate-reducing Desulforamulus aquiferis strain DSA

The study of anaerobic high molecular weight polycyclic aromatic hydrocarbons (HMW-PAHs) biodegradation under sulfate-reducing conditions by microorganisms, including microbial species responsible for biodegradation and relative metabolic processes, remains in its infancy. Here, we found that a new sulfate-reducer, designated as Desulforamulus aquiferis strain DSA, could biodegrade pyrene and benzo[a]pyrene (two kinds of HMW-PAHs) coupled with the reduction of sulfate to sulfide. Interestingly, strain DSA could simultaneously biodegrade pyrene and benzo[a]pyrene when they co-existed in culture. Additionally, the metabolic processes for anaerobic pyrene and benzo[a]pyrene biodegradation by strain DSA were newly proposed in this study based on the detection of intermediates, quantum chemical calculations and analyses of the genome and RTqPCR. The initial activation step for anaerobic pyrene and benzo[a]pyrene biodegradation by strain DSA was identified as the formation of pyrene-2-carboxylic acid and benzo[a]pyrene-11-carboxylic acid by carboxylation Thereafter, CoA ligase, ring reduction through hydrogenation, and ring cracking occurred, and short-chain fatty acids and carbon dioxide were identified as the final products. Additionally, DSA could also utilize benzene, naphthalene, anthracene, phenanthrene, and benz[a]anthracene as carbon sources. Our study can provide new guidance for the anaerobic HMW-PAHs biodegradation under sulfate-reducing conditions.

Degradation of benzo [a] pyrene in the soil enhanced by soapwort: The role of soapwort and functional microbial community

The limited bioavailability of polycyclic aromatic hydrocarbons (PAHs) in soils poses a challenge for their biodegradation. We hypotheses soapwort (Saponaria officinalis L.) as a factory in-situ providing biosurfactant, which could effectively promote the BaP removal by exogenous or native functional microbes. Rhizo-box and microcosm experiments were conducted to analyze the phyto-microbial remediation mechanism of soapwort, a plant that excretes biosurfactants known as saponins, and combined with two exogenous strains (P. chrysosporium and/or B. subtilis) for benzo[a]pyrene (BaP)-contaminated soils. The results revealed that the natural attenuation treatment (CK) BaP achieved only a 15.90% BaP removal rate after 100 days. In contrast, soapwort (SP), soapwort-bacteria (SPB), soapwort-fungus (SPF), soapwort- bacteria - fungus (SPM) mediated rhizosphere soils treatments yielded removal rates of 40.48%, 42.42%, 52.37%, and 62.57%, respectively. The analysis of the microbial community structure suggested that soapwort stimulated the introduction and native functional microorganisms, such as Rhizobiales, Micrococcales, and Clostridiales, which contributed to BaP removal via metabolic pathways. Furthermore, the efficient BaP removal was attributed to saponins, amino acids, and carbohydrates, which facilitated mobilization, solubilization of BaP, and microbial activity. In conclusion, our study highlights the potential of soapwort and specific microbial strains to effectively remediate PAH-contaminated soils.

The effect of alfalfa cultivation on improving physicochemical properties soil microorganisms community structure of grey desert soil

Planting alfalfa in grey desert soil can have significant effects on soil nutrient levels, microbial communities, and overall soil improvement. High-throughput sequencing technology was used to explore the relationship between the rhizosphere microbial community structure of grey desert soil planted with different alfalfa varieties (Aohan, WL525HQ, Knight2, Kangsai, Victoria, and WL712), alfalfa characteristics and rhizosphere soil physicochemical properties. Alfalfa planting increased the nitrogen and organic matter in the grey desert soil, and the effects in Victoria, Kangsai, and Aohan were relatively better than those in the unplanted areas and other alfalfa areas. The Chao1 and Shannon indexes showed that the diversity and relative abundance of bacteria and fungi in Kangsai were significantly higher than those in the unplanted areas and other alfalfa areas. Redundancy analysis showed that available nitrogen and phosphorus, as well as fresh weight, significantly affected the changes in fungal and bacterial communities. Variance partitioning analysis showed that soil and alfalfa growth characteristics explained 50.04% and 51.58% of the structural changes in the bacteria and fungi, respectively. Therefore, planting alfalfa changed the community structure of bacteria and fungi, as well as the content of soil nutrients, and different varieties of alfalfa had different effects on soil improvement.

Mechanisms of biostimulant-enhanced biodegradation of PAHs and BTEX mixed contaminants in soil by native microbial consortium

Despite the co-occurrence of polycyclic aromatic hydrocarbons (PAHs) and benzene, toluene, ethylbenzene, and xylene (BTEX) in the field, to date, knowledge on the bioremediation of benzene and benzo[a]pyrene (BaP) mixed contaminants is limited. In this study, the mechanisms underlying the biodegradation of benzene and BaP under individual and co-contaminated conditions followed by the enhanced biodegradation using methanol, ethanol, and vegetable oil as biostimulants were investigated. The results demonstrated that the benzene biodegradation was highly reduced under the co-contaminated condition compared to the individual benzene contamination, whereas the BaP biodegradation was slightly enhanced with the co-contamination of benzene. Moreover, biostimulation significantly improved the biodegradation of both contaminants under co-contaminated conditions. A trend of significant reduction in the bioavailable BaP contents was observed in all biostimulant-enhanced groups, implying that the bioavailable BaP was the preferred biodegradable BaP fraction. Furthermore, the enzymatic activity analysis revealed a significant increase in lipase and dehydrogenase (DHA) activities, as well as a reduction in the catalase and polyphenol oxidase, suggesting that the increased hydrolysis of fats and proton transfer, as well as the reduced oxidative stress, contributed to the enhanced benzene and BaP biodegradation in the vegetable oil treatment. In addition, the microbial composition analysis results demonstrated that the enriched functional genera contributed to the increased biodegradation efficiency, and the functional genera in the microbial consortium responded differently to different biostimulants, and competitive growth was observed in the biostimulant-enhanced treatments. In addition, the enrichment of Pseudomonas and Rhodococcus species was noticed during the biostimulation of benzene and BaP co-contamination soil, and was positively correlated with the DHA enzyme activities, indicating that these species encode DHA genes which contributed to the higher biodegradation. In conclusion, multiple lines of evidence were provided to shed light on the mechanisms of biostimulant-enhanced biodegradation of PAHs and BTEX co-contamination with native microbial consortiums.

Microbial degradation and transformation of benzo[a]pyrene by using a white-rot fungus Pleurotus eryngii F032

Polycyclic aromatic hydrocarbons (PAHs) are environmentally recalcitrant contaminants formed from naturally or incomplete combustion of organic materials and some of them are difficult to degrade due to their hydrophobicity and persistency. Benzo [a]pyrene (BaP), is one of PAHs that having five fused benzene and reported as mutagenic, carcinogenic and teratogenic compounds. Biodegradation is one of promising techniques due to its relatively low economic cost and microorganism is a natural capacity to consume hydrocarbons. In this investigation, Pleurotus eryngii F032 was grown in 20 mL of modified mineral salt broth (MSB) supplemented with BaP under static and agitated culture. Within 20 days, static culture removed 59% of BaP, whereas agitated culture removed the highest amount (73%). To expedite BaP elimination, the mechanism and behavior of BaP biosorption and biotransformation by Pleurotus eryngii F032 were additionally examined by gas chromatography-mass spectrometer (GC-MS). The optimal conditions for P. eryngii F032 to eliminate BaP were 25 °C, a C/N ratio of 8, pH 3 and 0.2% inoculum concentration. At an initial BaP content of 10 mg/L, more than 50% was effectively eliminated within 20 days under these conditions. Salinity, glucose, and rhamnolipids were the most important factors impacting BaP biodegradation. GC-MS found degradation products such as BaP-3,6-quinone, indicating plausible metabolic routes. Finally, it may be assumed that the primary mechanism by which white-rot fungi eliminate BaP is by the utilization of biotransformation enzymes such as laccase to mineralize the PAHs. Hence, Pleurotus eryngii F032 could be an ideal candidate to treat PAHs contaminated soils.

Biodegradation performance and diversity of enriched bacterial consortia capable of degrading high-molecular-weight polycyclic aromatic hydrocarbons

Polycyclic aromatic hydrocarbons (PAHs) are key organic pollutants in the environment that pose threats to the ecosystem and human health. The degradation of high molecular weight (HMW) PAHs by enriched bacterial consortia has been previously studied, while the involved metabolisms and microbial communities are still unclear and warrant further investigations. In this study, five bacterial consortia capable of utilizing different PAHs (naphthalene, anthracene, and pyrene) as the sole carbon and energy sources were enriched from PAH-contaminated soil samples. Among the five consortia, consortium TC exhibited the highest pyrene degradation efficiency (91%) after 19 d of incubation. The degradation efficiency was further enhanced up to 99% by supplementing yeast extract. Besides, consortium TC showed tolerances to high concentrations of pyrene (up to 1000 mg/L) and different heavy metal stresses (including Zn²⁺, Cd²⁺, and Pb²⁺). The dominant genus in consortium TC, GS, and PL showing relatively higher degradation efficiency for anthracene and pyrene was Pseudomonas, whereas consortium PG and GD were predominated by genus Achromobacter and class Enterobacteriaceae, respectively. Consortium TC, as a highly efficient HMW PAH-degrading consortium, could be applied for synergistic biodegradation of HMW PAHs and in situ bioremediation of the sites contaminated with both PAHs and heavy metals.

Lignin peroxidase-catalyzed direct oxidation of trace organic pollutants through a long-range electron transfer mechanism: Using propranolol as an example

In this work, lignin peroxidase (LiP) was extracted for the in vitro degradation of a persistent compound (propranolol, PPN). The results showed that 94.2% of PPN was degraded at 30 U L^-1 LiP activity and 10 mg L^-1 PPN. The PPN degradation rate increased from 33.5% to 94.2% when the veratryl alcohol (VA) concentration varied from 0 to 180 µM, but decreased to 73.1% with further VA addition. This phenomenon confirmed that VA was indispensable, however, it also acted as a competitive inhibitor of PPN oxidation. Computational analysis revealed that the Trp171…iron porphyrin (TRP-FeP) path was responsible for specific substrate (e.g., VA) transformation, and another long-range electron transfer (LRET) path through His-Asp…FeP (HSP-FeP) was discovered for non-specific substrate (e.g., PPN) degradation. These two electron-transfer routes shared one catalytic center, and VA protected the enzyme from H₂O₂-dependent inactivation. The HSP-FeP path transformed PPN through single electron transfer or H abstraction mechanisms. In addition, hydroxyl radicals generated in the LiP/H₂O₂ system were involved in the hydroxylation of the PPN intermediates. Possible degradation pathways were deduced using these degradation mechanisms and mass-spectrometry analysis. The multipath degradation mechanism endowed LiP with a remarkable capacity for removing various recalcitrant pollutants in environmental remediation.

Vertical profile and assessment of soil pollution from a typical coking plant by suspect screening and non-target screening using GC/QTOF-MS

A comprehensive workflow for suspect screening and non-target screening with gas chromatography coupled with quadrupole time-of-flight mass spectrometry (GC/QTOF-MS) was used to characterize the pollution characteristics of soil samples in a typical coking plant in China. Suspect screening confirmed 57 chemicals including PAHs, alkyl PAHs, and phthalates contained in high-resolution personal compound database and library (PCDL). Non-target screening detected 88 chemicals from soil samples in the NIST 17 library. A total of 122 chemicals were screened in soil samples, and many of them were of emerging concern. Their presence in the soil obtained from coking operations has been underestimated, such as the oxygenated PAHs (naphtho[2,1-b]furan and 9H-fluoren-9-one), and the alkyl biphenyls compounds (4,4'-dimethylbiphenyl, 3,3'-dimethylbiphenyl, 4-methyl-1,1'-biphenyl and 2,2',5,5'-tetramethyl-1,1'-biphenyl). Toxicity assays by luminescent bacteria proved that the extracts from soil samples at different depths showed varying toxicity to V. qinghaiensis sp.-Q67. Soil extracts from a depth of 20-40 cm exhibited the greatest toxicity to luminescent bacteria compared with the other six-layered soil samples, which was correlated with the number of detectable pollutants and total organic carbon content. This study provided a screening method for suspect and non-target contaminants in urban industrial soil sites, which was important in identifying localized contamination sources.

Biochar derived from chicken manure as a green adsorbent for naphthalene removal

In this study, biochar was generated from chicken manure by using a tube furnace under different temperatures (300, 500, and 700 °C), and the treatments were noted as J300, J500, and J700, respectively. In comparison, another type of biochar was prepared under 500 °C with a muffle furnace, and the treatment was noted as JM500. Biochar in treatment group J500 was subsequently modified with HNO₃ and NaOH, and the treatments were noted as J500-HNO₃ and J500-NaOH, respectively. The sorption efficiencies of naphthalene by the above six types of biochar were evaluated. Characteristic results showed that the surface pores of the biochar were improved with the increase of temperature, and biochar under the treatments J300, J500, J700, and JM500 experienced a high speed of adsorption within 1 h after the naphthalene adsorption started. The adsorption capacity of naphthalene increased with the increase of the initial concentration of naphthalene. Treatment J700 exhibited the largest adsorption capacity since its biochar surface pore structure was more fully developed with a crystal structure formed, and its specific surface area was increased by about 20 times compared to the original chicken manure. After biochar modification using HNO₃ and NaOH, the infrared spectrum changed, and the adsorption active sites were increased. The biochar modification by HNO₃ had a high naphthalene adsorption efficiency compared to NaOH. The order of adsorption capacity was as follows: J500 ≈ JM500 < J300 < J500-NaOH < J500-HNO₃ < J700.

Removal of high-molecular-weight polycyclic aromatic hydrocarbons by a microbial consortium immobilized in magnetic floating biochar gel beads

A bacterial consortium immobilized in magnetic floating biochar gel beads is proposed to remove high-molecular-weight polycyclic aromatic hydrocarbons. The microbial consortium performed better than single strains and consisted of four strains of marine bacteria for degrading pyrene (PYR), two strains for benzo(a)pyrene (BAP), and three strains for indeno(1,2,3-cd)pyrene (INP), which were isolated from oil-contaminated seawater. The immobilized cells could biodegrade 89.8%, 66.9% and 78.2% of PYR, BAP and INP, respectively, and had better tolerance to pH, temperature and salinity than free cells. The Andrews model was used to explore the biodegradation kinetics, and when the initial concentrations of PYR, BAP, and INP were 7.80, 3.05, and 3.41 mg/L, the specific biodegradation rates reached maximum values of 0.2507, 0.1286, and 0.1930 d^-1, respectively. The immobilized microbial consortium had a high HMW-PAH removal ability and good floatability and magnetic properties and could be collected by an external magnetic field.

Remediation of 1-Nitropyrene in Soil: A Comparative Study with Pyrene

Nitrated polycyclic aromatic hydrocarbons (nPAHs) are ubiquitous environmental pollutants, which exhibits higher toxicity than their corresponding parent PAHs (pPAHs). Recent studies demonstrated that the nPAHs could represent major soil pollution, however the remediation of nPAHs has been rarely reported. In this study, biological, physical, and chemical methods have been applied to remove 1-nitropyrene, the model nPAH, in contaminated soil. A comparative study with pyrene has also been investigated and evaluated. The results suggest that the physical method with activated carbon is an efficient and economical approach, removing 88.1% and 78.0% of 1-nitropyrene and pyrene respectively, within one day. The zero-valent ion has a similar removal performance on 1-nitropyrene (83.1%), converting 1-nitropyrene to 1-aminopyrene in soil via chemical reduction and decreasing the mutagenicity and carcinogenicity of 1-nitropyrene. Biological remediation that employs scallion as a plant model can reduce 55.0% of 1-nitropyrene in soil (from 39.6 to 17.8 μg/kg), while 77.9% of pyrene can be removed by plant. This indicates that nPAHs might be more persistent than corresponding pPAHs in soil. It is anticipated that this study could draw public awareness of nitro-derivatives of pPAHs and provide remediation technologies of carcinogenic nPAHs in soil.

Characterization and genomic function analysis of phenanthrene-degrading bacterium Pseudomonas sp. Lphe-2

A stain of Pseudomonas sp. Lphe-2, which could degrade phenanthrene as the main carbon and energy source, was isolated from the aerobic sludge of a coking plant. Then its biodegradation characteristics, whole genome sequence and biodegradation pathway were examined. The Lphe-2 strain exhibited broad-spectrum degradation activities for various polycyclic aromatic hydrocarbons (PAHs), including naphthalene (NAP), phenanthrene (PHE), and pyrene (PYR). Under the optimal conditions, the degradation efficiency of phenanthrene (100 mg/L) is 92.76% on the 7th day, and 2-carboxybenzaldehyde and 1-hydroxy-2-naphthoic acid are the major metabolites found in phenanthrene metabolism. Genomic analysis of Pseudomonas sp. Lphe-2 showed that a total of 3879 genes from the Lphe-2 strain were annotated based on the COG classification, and the genomic information was annotated to 185 metabolic pathways. Based on the intermediate metabolites detected by Gas Chromatography-Mass Spectrometer (GC-MS) and all potential phenanthrene-degrading genes identified by BLAST search, a phenanthrene biodegradation pathway of Lphe-2 strain was proposed. These results suggested that Lphe-2 strain has a good prospect in the bioremediation of PAHs pollution.