Function of c-type cytochromes of Shewanella xiamenensis in enhanced anaerobic bioreduction of Cr(VI) by graphene oxide and graphene oxide/polyvinyl alcohol films

Enhanced Sb(V) removal of sulfate-rich wastewater by anaerobic granular sludge assisted with Fe/C amendment

Antimony (Sb) and sulfate are two common pollutants in Sb mine drainage and Sb-containing textile wastewater. In this paper, it was found that iron‑carbon (Fe/C) enhanced Sb(V) removal from sulfate-rich wastewater by anaerobic granular sludge (AnGS). Sulfate inhibited Sb(V) removal (S + Sb, k = 0.101), while Fe/C alleviated the inhibition and increased Sb(V) removal rate by 2.3 times (Fe/C + S + Sb, k = 0.236). Fe/C could promote the removal of Sb(III), and Sb(III) content decreased significantly after 8 h. Meanwhile, Fe/C enhanced the removal of sulfate. The 3D-EEM spectrum of supernatant in Fe/C + S + Sb group (at 24 h) showed that Fe/C stimulated the production of soluble microbial products (SMP) in wastewater. SMP alleviated the inhibition of sulfate, promoting AnGS to reduce Sb(V). Sb(V) could be reduced to Sb(III) both by AnGS and sulfides produced from sulfate reduction. Further analysis of extracellular polymeric substances (EPS) and AnGS showed that Fe/C increased the adsorbed Sb(V) in EPS and the c-type cytochrome content in AnGS, which may be beneficial for Sb(V) removal. Sb(V) reduction in Fe/C + S + Sb group may be related to the genus Acinetobacter, while in Sb group, several bacteria may be involved in Sb(V) reduction, such as Acinetobacter, Pseudomonas and Corynebacterium. This study provided insights into Fe/C-enhanced Sb(V) removal from sulfate-rich wastewater.

Metabolic engineering strategies to enable microbial electrosynthesis utilization of CO2: recent progress and challenges

Microbial electrosynthesis (MES) is a promising technology that mainly utilizes microbial cells to convert CO2 into value-added chemicals using electrons provided by the cathode. However, the low electron transfer rate is a solid bottleneck hindering the further application of MES. Thus, as an effective strategy, genetic tools play a key role in MES for enhancing the electron transfer rate and diversity of production. We describe a set of genetic strategies based on fundamental characteristics and current successes and discuss their functional mechanisms in driving microbial electrocatalytic reactions to fully comprehend the roles and uses of genetic tools in MES. This paper also analyzes the process of nanomaterial application in extracellular electron transfer (EET). It provides a technique that combines nanomaterials and genetic tools to increase MES efficiency, because nanoparticles have a role in the production of functional genes in EET although genetic tools can subvert MES, it still has issues with difficult transformation and low expression levels. Genetic tools remain one of the most promising future strategies for advancing the MES process despite these challenges.

Mechanism of Cr(VI) bioreduction by Clostridium sp. LQ25 under Fe(III) reducing conditions

The Cr(VI) bioreduction has attracted widespread attention in the field of Cr(VI) pollution remediation due to its environmental friendliness. Further in-depth research on the reduction mechanisms is necessary to enhance the efficiency of Cr(VI) bioreduction. However, the limited research on Cr(VI) bioreduction mechanisms remains a bottleneck for the practical application of Cr(VI) reduction. In this study, The Cr(VI) reduction of strain LQ25 was significantly improved when Fe(III) was used as an electron acceptor, which increased by 1.6-fold maximum within the set Cr(VI) concentration range. Based on this, the electron transfer process of Cr(VI) reduction was analyzed using strain LQ25. Based on genomic data, flavin proteins were found to interact closely with electron transfer-related proteins using protein-protein interaction (PPi) analysis. Transcriptome analysis revealed that flavin synthesis genes (ribE, ribBA, and ribH) and electron transfer flavoprotein genes (fixA, etfA, fixB, and etfB) were significantly upregulated when Fe(III) was used as the electron acceptor. These results indicate that the fermentative dissimilatory Fe(III)-reducing bacterial strain LQ25 mainly uses flavin as an electron shuttle for electron transfer, which differs from the common use of cytochrome c in respiratory bacteria. These findings on the mechanism of Cr(VI) bioreduction provide technical support for improving the efficiency of Cr(VI) reduction which promote the practical application of Cr(VI) bioreduction in the field of Cr(VI) pollution remediation.

Phosphomolybdic acid enhancing hexavalent chromium bio-reduction in long-term operation: Optimal dosage and mechanism analysis

The bio-reduction of Cr(VI) is regarded as a feasible and safe strategy to treat Cr pollution. The optimal concentration of phosphomolybdic acid (PMo12) for Cr(VI) reduction and the catalytic mechanism of electron behavior (electron production, electron transport and electron consumption) were revealed in denitrifying biofilm systems. The results showed that 0.1 mM PMo12 could achieve 92.5 % removal efficiency of 90 mg/L Cr(VI), which was 47.7 % higher than that of PMo12-free system, and improve the extracellular fixation capacity of Cr(III). The activity of peroxidase (POD) was significantly promoted by PMo12 to repair oxidative stress damage caused by Cr(VI) reduction. Additionally, analysis of electron behavior demonstrated that PMo12 could enhance key indicators of electron production, transport and consumption. This led to rapid activation of the electron pathway inhibited by Cr(VI), enabling simultaneous efficient nitrogen removal and Cr(VI) reduction in the biofilm system. This discovery will provide an efficient technique for Cr-containing wastewater treatment.

Nanoarmor: cytoprotection for single living cells

Single cell modification or hybridization technology has become a popular direction in bioengineering in recent years, with applications in clean energy, environmental stewardship, and sustainable human development. Here, we draw attention to nanoarmor, a representative achievement of cytoprotection and functionalization technology. The fundamental principles of nanoarmor need to be studied with input from multiple disciplines, including biology, chemistry, and material science. In this review, we explain the role of nanoarmor and review progress in its applications. We also discuss three main challenges associated with its development: self-driving ability, heterojunction characteristics, and mineralization formation. Finally, we propose a preliminary classification system for nanoarmor.

Mechanism of Cr(VI) removal by efficient Cr(VI)-resistant Bacillus mobilis CR3

Cr(VI) is a hazardous environmental pollutant that poses significant risks to ecosystems and human health. We successfully isolated a novel strain of Bacillus mobilis, strain CR3, from Cr(VI)-contaminated soil. Strain CR3 showed 86.70% removal capacity at 200 mg/L Cr(VI), and a good Cr(VI) removal capacity at different pH, temperature, coexisting ions, and electron donor conditions. Different concentrations of Cr(VI) affected the activity of CR3 cells and the removal rate of Cr(VI), and approximately 3.46% of total Cr was immobilized at the end of the reaction. The combination of SEM-EDS and TEM-EDS analysis showed that Cr accumulated both on the cell surface and inside the cells after treatment with Cr(VI). XPS analysis showed that both Cr(III) and Cr(VI) were present on the cell surface, and FTIR results indicated that the presence of Cr on the cell surface was mainly related to functional groups, such as O-H, phosphate, and -COOH. The removal of Cr(VI) was mainly achieved through bioreduction, which primarily occurred outside the cell. Metabolomics analysis revealed the upregulation of five metabolites, including phenol and L-carnosine, was closely associated with Cr(VI) reduction, heavy metal chelation, and detoxification mechanisms. In addition, numerous metabolites were linked to cellular homeostasis exhibited differential expression. Cr(VI) exerted inhibitory effects on the division rate and influenced critical pathways, including energy metabolism, nucleotide metabolism, and amino acid synthesis and catabolism. These findings reveal the molecular mechanism of Cr(VI) removal by strain CR3 and provide valuable insights to guide the remediation of Cr(VI)-contaminated sites.

Metabolic regulation of Shewanella oneidensis for microbial electrosynthesis: From extracellular to intracellular

Shewanella oneidensis MR-1 (S. oneidensis MR-1) has been shown to benefit from microbial electrosynthesis (MES) due to its exceptional electron transfer efficiency. In this study, genes involved in both extracellular electron uptake (EEU) and intracellular CO2 conversion processes were examined and regulated to enhance MES performance. The key genes identified for MES in the EEU process were mtrB, mtrC, mtrD, mtrE, omcA and cctA. Overexpression of these genes resulted in 1.5-2.1 times higher formate productivity than that of the wild-type strains (0.63 mmol/(L·μg protein)), as 0.94-1.61 mmol/(L·μg protein). In the intracellular CO2 conversion process, overexpression of the nadE, nadD, nadR, nadV, pncC and petC genes increased formate productivity 1.3-fold-3.4-fold. Moreover, overexpression of the formate dehydrogenase genes fdhA1, fdhB1 and fdhX1 in modified strains led to a 2.3-fold-3.1-fold increase in formate productivity compared to wild-type strains. The co-overexpression of cctA, fdhA1 and nadV in the mutant strain resulted in 5.59 times (3.50 mmol/(L·μg protein)) higher formate productivity than that of the wild-type strains. These findings revealed that electrons of MES derived from the electrode were utilized in the energy module for synthesizing ATP and NADH, followed by the synthesis of formate in formate dehydrogenase by the combinatorial effects of ATP, NADH, electrons and CO2. The results provide new insights into the mechanism of MES in S. oneidensis MR-1 and pave the way for genetic improvements that could facilitate the further application of MES.

Graphene hydrogel improves S. putrefaciens' biological treatment of dye wastewater: Impacts of extracellular electron transfer and function of c-type cytochromes

Biocompatible materials and biocarriers have attracted great attention in biological wastewater treatment owing to their excellent performance in improving pollutant removal. Graphene-based material, a biocarrier candidate, with excellent adsorbability and conductivity was increasingly applied in anaerobic digestion due to its exceptional potential in the adsorption and electron transfer process. Nevertheless, the green approach for the formation of bio-graphene complexes and their mechanism in dye removal is limited. The aim of this study is to investigate and assess the performance of biological graphene hydrogel (BGH) formed by Shewanella putrefaciens CN32 on the removal of methyl orange (MO) and methylene blue (MB). The results showed that the formation of BGH is determined by the physicochemical characteristics of graphene oxide, including sheet size, oxidation degree, and interlayer distance. BGHs significantly increased the removal efficiency of dyes in comparison to non-graphene samples, with a 24-h removal rate of MO and MB reaching 92.9% and 91%, respectively. The synergetic mechanism of BGH on the enhanced removal rate of organic dye can be ascribed to GO's ability in accelerating extracellular electron transfer and stimulating biodegradation pathways relating to c-type cytochromes, including MtrA and MtrC. These findings provided an understanding of the relationship between graphene-based nanomaterials and Shewanella, which facilitated their future application in environmental biotechnology.

Environmental biotechnology and the involving biological process using graphene-based biocompatible material

Biotechnology is a promising approach to environmental remediation but requires improvement in efficiency and convenience. The improvement of biotechnology has been illustrated with the help of biocompatible materials as biocarrier for environmental remediations. Recently, graphene-based materials (GBMs) have become promising materials in environmental biotechnology. To better illustrate the principle and mechanisms of GBM application in biotechnology, the comprehension of the biological response of microorganisms and enzymes when facing the GBMs is needed. The review illustrated distinct GBM-microbe/enzyme composites by providing the GBM-microbe/enzyme interaction and the determining factors. There are diverse GBM modifications for distinct biotechnology applications. Each of these methods and applications depends on the physicochemical properties of GBMs. The applications of these composites were mainly categorized as pollutant adsorption, anaerobic digestion, microbial fuel cells, and organics degradation. Where information was available, the strategies and mechanisms of GBMs in improving application efficacies were also demonstrated. In addition, the biological response, from microbial community changes, extracellular polymeric substances changes to biological pathway alteration, may become important in the application of these composites. Furthermore, we also discuss challenges facing the environmental application of GBMs, considering their fate and toxicity in the ecosystem, and offer potential solutions. This research significantly enhances our comprehension of the fundamental principles, underlying mechanisms, and biological pathways for the in-situ utilization of GBMs.

Biochar conductivity and electron donating capability control Cr(VI) bioreduction

Biochar can facilitate Cr(VI) bioreduction, but it is still undetermined which biochar property control this process. We observed that the apparent Cr(VI) bioreduction by Shewanella oneidensis MR-1 could be identified as a fast and a relatively slow processes. The fast-bioreduction rates (rf0) were 2-15 times higher than the slow-bioreduction rates (rs0). In this study, we investigated the kinetics and efficiency of biochar in promoting Cr(VI) reduction by S. oneidensis MR-1 in the neutral solution using a "dual-process model" (fast and slow processes), and analyzed the mechanisms of biochar concentration, conductivity, particle size and other properties on these two processes. The correlation analysis of these rate constants and biochar properties was carried out. The fast-bioreduction rates were associated with higher conductivity and smaller particle sizes of biochar, which facilitated the direct electron transfer from Shewanella oneidensis MR-1 to Cr(VI). The Cr(VI) slow-bioreduction rates (rs0) were mainly determined by the electron donating capability of biochar and independent of the cell concentration. Our results suggested that Cr(VI) bioreduction was mediated by both electron conductivity and redox potential of biochar. This result is instructive for biochar production. Manipulating biochar properties to control fast and slow Cr(VI) reduction may be helpful to effectively remove or detoxify Cr(VI) in the environment.

An Overview on Exploitation of Graphene-Based Membranes: From Water Treatment to Medical Industry, Including Recent Fighting against COVID-19

Graphene and its derivatives have lately been the subject of increased attention for different environmental applications of membrane technology such as water treatment and air filtration, exploiting their antimicrobial and antiviral activity. They are interesting candidates as membrane materials for their outstanding mechanical and chemical stability and for their thin two-dimensional (2D) nanostructure with potential pore engineering for advanced separation. All these applications have evolved and diversified from discovery to today, and now graphene and graphene derivatives also offer fascinating opportunities for the fight against infective diseases such as COVID-19 thanks to their antimicrobial and antiviral properties. This paper presents an overview of graphene-based 2D materials, their preparation and use as membrane material for applications in water treatment and in respiratory protection devices.

Detoxification mechanisms of electroactive microorganisms under toxicity stress: A review

Remediation of environmental toxic pollutants has attracted extensive attention in recent years. Microbial bioremediation has been an important technology for removing toxic pollutants. However, microbial activity is also susceptible to toxicity stress in the process of intracellular detoxification, which significantly reduces microbial activity. Electroactive microorganisms (EAMs) can detoxify toxic pollutants extracellularly to a certain extent, which is related to their unique extracellular electron transfer (EET) function. In this review, the extracellular and intracellular aspects of the EAMs’ detoxification mechanisms are explored separately. Additionally, various strategies for enhancing the effect of extracellular detoxification are discussed. Finally, future research directions are proposed based on the bottlenecks encountered in the current studies. This review can contribute to the development of toxic pollutants remediation technologies based on EAMs, and provide theoretical and technical support for future practical engineering applications.

Inward-to-outward assembly of amine-functionalized carbon dots and polydopamine to Shewanella oneidensis MR-1 for high-efficiency, microbial-photoreduction of Cr(VI)

A novel photosensitized living biohybrid was fabricated by inward-to-outward assembly of amine-functionalized carbon dots (NCDs) and polydopamine (PDA) to Shewanella oneidensis MR-1 and applied for high-efficiency, microbial-photoreduction of Cr(VI). Within a 72 h test period, biohybrids achieved a pronounced catalytic reduction capacity (100%) for 100 mg/L Cr(VI) under visible illumination, greatly surpassing the poor capacity (only 2.5%) displayed by the wild strain under dark conditions. Modular configurations of NCDs and PDA afforded biohybrids with a large electron flux by harvesting extracellular photoelectrons generated from illuminated NCDs and increasing reducing equivalents released from an enlarged intracellular NADH/NAD⁺ pool. Further, increased production of intracellular c-type cytochromes and extracellular flavins resulting from the modular configuration enhanced the biohybrid electron transport ability. The enhancement of electron transport was also attributed to more conductive conduits at NCDs-PDA junction interfaces. Moreover, because NCDs are highly reductive, the enhanced Cr(VI) reduction was also attributed to direct reduction by the NCDs and the direct Cr(VI) reduction by sterile NCDs-assembled biohybrid was up to 20% in the dark. Overall, a highly efficient strategy for removal/transformation of Cr(VI) by using NCD-assembled photosensitized biohybrids was proposed in this work, which greatly exceeded the performance of Cr(VI)-remediation strategies based on conventional microbial technologies.

Modular configurations of living biomaterials incorporating nano-based artificial mediators and synthetic biology to improve bioelectrocatalytic performance: A review

Currently, the industrial application of bioelectrochemical systems (BESs) that are incubated with natural electrochemically active microbes (EABs) is limited due to inefficient extracellular electron transfer (EET) by natural EABs. Notably, recent studies have identified several novel living biomaterials comprising highly efficient electron transfer systems allowing unparalleled proficiency of energy conversion. Introduction of these biomaterials into BESs could fundamentally increase their utilization for a wide range of applications. This review provides a comprehensive assessment of recent advancements in the design of living biomaterials that can be exploited to enhance bioelectrocatalytic performance. Further, modular configurations of abiotic and biotic components promise a powerful enhancement through integration of nano-based artificial mediators and synthetic biology. Herein, recent advancements in BESs are synthesized and assessed, including heterojunctions between conductive nanomaterials and EABs, in-situ hybrid self-assembly of EABs and nano-sized semiconductors, cytoprotection in biohybrids, synthetic biological modifications of EABs and electroactive biofilms. Since living biomaterials comprise a broad range of disciplines, such as molecular biology, electrochemistry and material sciences, full integration of technological advances applied in an interdisciplinary framework will greatly enhance/advance the utility and novelty of BESs. Overall, emerging fundamental knowledge concerning living biomaterials provides a powerful opportunity to markedly boost EET efficiency and facilitate the industrial application of BESs to meet global sustainability challenges/goals.

Enhanced microbial reduction of aqueous hexavalent chromium by Shewanella oneidensis MR-1 with biochar as electron shuttle

Biochar, carbonaceous material produced from biomass pyrolysis, has been demonstrated to have electron transfer property (associated with redox active groups and multi condensed aromatic moiety), and to be also involved in biogeochemical redox reactions. In this study, the enhanced removal of Cr(VI) by Shewanella oneidensis MR-1(MR-1) in the presence of biochars with different pyrolysis temperatures (300 to 800 °C) was investigated to understand how biochar interacts with Cr(VI) reducing bacteria under anaerobic condition. The promotion effects of biochar (as high as 1.07~1.47 fold) were discovered in this process, of which the synergistic effect of BMBC700(ball milled biochar) and BMBC800 with MR-1 was noticeable, in contrast, the synergistic effect of BMBCs (300-600 °C) with MR-1 was not recognized. The more enhanced removal effect was observed with the increase of BMBC dosage for BMBC700+MR-1 group. The conductivity and conjugated O-containing functional groups of BMBC700 particles themselves has been proposed to become a dominant factor for the synergistic action with this strain. And, the smallest negative Zeta potential of BMBC700 and BMBC800 is thought to favor decreasing the distance from microbe than other BMBCs. The results are expected to provide some technical considerations and scientific insight for the optimization of bioreduction by useful microbes combining with biochar composites to be newly developed.

Contribution of pristine and reduced microbial extracellular polymeric substances of different sources to Cu(II) reduction

Microbial extracellular polymeric substances (EPS) significantly influence metal behavior in the environment, but the electron transfer reaction between EPS and copper that determine the speciation and fate of copper is lacking. Here, we investigated the role of EPS from Shewanella oneidensis MR-1, Bacillus subtilis, and Saccharomyces cerevisiae and its redox state in the Cu(II) reduction under anoxic conditions. Both pristine and reduced EPS mediated copper transformation from Cu(II) to Cu(I) within 10 min. The Cu(II) reduction efficiency by the reduced EPS was ten times higher than that by the pristine EPS, which could be ascribed to the varied electron transfer ability of EPS. Multiple spectroscopic results indicated that c-type cytochromes and O-/N-containing groups were effective redox moieties responsible for copper transformation. The c-type cytochromes contributed for about 80% to the overall electron flux in S. oneidensis MR-1 EPS, which was significantly higher than in B. subtilis (27%) and S. cerevisiae EPS (22%). In contrast, functional groups such as phenolic and amide, dominated Cu(II) reduction for the B. subtilis and S. cerevisiae EPS. This study emphasizes the significant contribution of microbial EPS that serve as reducing agents and electron transfer mediators for cupric reduction and cuprous formation in the natural environments.

Highly efficient and ultrafast removal of Cr(VI)in aqueous solution to ppb level by poly(allylamine hydrochloride) covalently cross-linked amino-modified graphene oxide

We herein report a facile strategy to prepare poly(allylamine hydrochloride) cross-linked amino-modified graphene oxide (PAH-ASGO) by Schiff-base reactions. The resulting PAH-ASGO exhibited a maximum adsorption capacity of 373.1 mg/g for Cr(VI), which was nearly 9 times higher than that of pure graphene oxide, exceeding that of most GO-based materials previously reported. More significantly, PAH-ASGO can effectively diminish the Cr(VI) concentration from 9.9 mg/L to the extremely low level of 0.004 mg/L within 10 s, far below the maximum allowable level of Cr(VI) (0.05 mg/L) in drinking water. In addition, the adsorbents still displayed excellent removal efficiency of 91.8% after 10 cycles. Considering the broad diversity, we developed also a magnetic PAH-ASGO/Fe₃O₄ adsorbent by a simple cross-linking reaction to achieve rapid separation of PAH-ASGO from their aqueous solution. Finally, the PAH-ASGO was successfully utilized to treat the actual industrial effluent.

Cadmium sulfide nanoparticles-assisted intimate coupling of microbial and photoelectrochemical processes: Mechanisms and environmental applications

Intimate coupling of microbial extracellular electron transfer (EET) and photoelectrochemical processes is an emerging research area with great potential to circumvent many disadvantages associated with traditional techniques that depend on independent microbial or photocatalysis treatment. Microbial EET processes involve microorganism oxidation of extracellular electron donors for respiration and synchronous reduction of extracellular electron acceptors to form an integrated respiratory chain. Coupled microbial EET-photoelectrochemical technologies greatly improve energy conversion efficiency providing both economic and environmental benefits. Among substitutes for semiconductor photocatalysts, cadmium sulfide nanoparticles (CdS NPs) possess several attractive properties. Specifically, CdS NPs have suitable electrical conductivity, large specific surface area, visible light-driven photocatalysis capability and robust biocompatibility, enabling them to promote hybrid microbial-photoelectrochemical processes. This review highlights recent advances in intimately coupled CdS NPs-microbial extracellular electron transfer systems and examines the mechanistic pathways involved in photoelectrochemical transformations. Finally, the prospects for emerging applications utilizing hybrid CdS NPs-based microbial-photoelectrochemical technologies are assessed. As such, this review provides a rigorous fundamental analysis of electron transport dynamics for hybrid CdS NPs-microbial photoelectrochemical processes and explores the applicability of engineered CdS NPs-biohybrids for future applications, such as in environmental remediation and clean-energy production.