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Iotchev IB, Perevozniuk DA, Lazarenko I, Perescis MFJ, Sitnikova E, van Luijtelaar G. The "Twin Peaks" method of automated Spike-Wave detection: A two-step, two-criteria Matlab application. J Neurosci Methods 2024; 409:110199. [PMID: 38897420 DOI: 10.1016/j.jneumeth.2024.110199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 06/08/2024] [Accepted: 06/11/2024] [Indexed: 06/21/2024]
Abstract
BACKGROUND There are many automated spike-wave discharge detectors, but the known weaknesses of otherwise good methods and the varying working conditions of different research groups (mainly the access to hardware and software) invite further exploration into alternative approaches. NEW METHOD The algorithm combines two criteria, one in the time-domain and one in the frequency-domain, exploiting morphological asymmetry and the presence of harmonics, respectively. The time-domain criterion is additionally adjusted by normal modelling between the first and second iterations. RESULTS We report specificity, sensitivity and accuracy values for 20 recordings from 17 mature, male WAG/Rij rats. In addition, performance was preliminary tested with different hormones, pharmacological injections and species (mice) in a smaller sample. Accuracy and specificity were consistently above 91 %. The number of automatically detected spike-wave discharges was strongly correlated with the numbers derived from visual inspection. Sensitivity varied more strongly than specificity, but high values were observed in both rats and mice. COMPARISON WITH EXISTING METHODS The algorithm avoids low-voltage movement artifacts, displays a lower false positive rate than many predecessors and appears to work across species, i.e. while designed initially with data from the WAG/Rij rat, the algorithm can pick up seizure activity in the mouse of considerably lower inter-spike frequency. Weaknesses of the proposed method include a lower sensitivity than several predecessors. CONCLUSION The algorithm excels in being a selective and flexible (based on e.g. its performance across rats and mice) spike-wave discharge detector. Future work could attempt to increase the sensitivity of this approach.
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Affiliation(s)
- Ivaylo Borislavov Iotchev
- Department of Ethology, Eötvös Loránd University ELTE, Pázmány Péter sétány 1/c, Budapest 1117, Hungary.
| | - Dmitrii Andreevitch Perevozniuk
- Institute of the Higher Nervous Activity and Neurophysiology of Russian Academy of Sciences, Butlerova Str., 5A, Moscow 117485, Russian Federation
| | - Ivan Lazarenko
- Institute of the Higher Nervous Activity and Neurophysiology of Russian Academy of Sciences, Butlerova Str., 5A, Moscow 117485, Russian Federation
| | - Martin F J Perescis
- HAS Green Academy, Onderwijsboulevard 221, 's-Hertogenbosch 5223 DE, the Netherlands; Donders Institute for Brain, Cognition and Behaviour, Radboud University, Thomas van Aquinostraat 4, Nijmegen 6525 GD, the Netherlands
| | - Evgenia Sitnikova
- Institute of the Higher Nervous Activity and Neurophysiology of Russian Academy of Sciences, Butlerova Str., 5A, Moscow 117485, Russian Federation
| | - Gilles van Luijtelaar
- Donders Institute for Brain, Cognition and Behaviour, Radboud University, Thomas van Aquinostraat 4, Nijmegen 6525 GD, the Netherlands
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Cumming D, Kozhemiako N, Thurm AE, Farmer CA, Purcell S, Buckley AW. Spindle chirp and other sleep oscillatory features in young children with autism. Sleep Med 2024; 119:320-328. [PMID: 38733760 PMCID: PMC11348284 DOI: 10.1016/j.sleep.2024.05.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 05/01/2024] [Accepted: 05/02/2024] [Indexed: 05/13/2024]
Abstract
OBJECTIVES To determine whether spindle chirp and other sleep oscillatory features differ in young children with and without autism. METHODS Automated processing software was used to re-assess an extant set of polysomnograms representing 121 children (91 with autism [ASD], 30 typically-developing [TD]), with an age range of 1.35-8.23 years. Spindle metrics, including chirp, and slow oscillation (SO) characteristics were compared between groups. SO and fast and slow spindle (FS, SS) interactions were also investigated. Secondary analyses were performed assessing behavioural data associations, as well as exploratory cohort comparisons to children with non-autism developmental delay (DD). RESULTS Posterior FS and SS chirp was significantly more negative in ASD than TD. Both groups had comparable intra-spindle frequency range and variance. Frontal and central SO amplitude were decreased in ASD. In contrast to previous manual findings, no differences were detected in other spindle or SO metrics. The ASD group displayed a higher parietal coupling angle. No differences were observed in phase-frequency coupling. The DD group demonstrated lower FS chirp and higher coupling angle than TD. Parietal SS chirp was positively associated with full developmental quotient. CONCLUSIONS For the first time spindle chirp was investigated in autism and was found to be significantly more negative than in TD in this large cohort of young children. This finding strengthens previous reports of spindle and SO abnormalities in ASD. Further investigation of spindle chirp in healthy and clinical populations across development will help elucidate the significance of this difference and better understand this novel metric.
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Affiliation(s)
- Drew Cumming
- National Institute of Mental Health, NIH, Bethesda, MD, USA
| | | | - Audrey E Thurm
- National Institute of Mental Health, NIH, Bethesda, MD, USA
| | | | - Shaun Purcell
- Brigham and Women's Hospital & Harvard Medical School, Boston, MA, USA
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Cumming D, Kozhemiako N, Thurm AE, Farmer CA, Purcell SW, Buckley AW. Spindle Chirp and other Sleep Oscillatory Features in Young Children with Autism. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.06.15.545095. [PMID: 37398218 PMCID: PMC10312722 DOI: 10.1101/2023.06.15.545095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/04/2023]
Abstract
Objectives To determine whether spindle chirp and other sleep oscillatory features differ in young children with and without autism. Methods Automated processing software was used to re-assess an extant set of polysomnograms representing 121 children (91 with autism [ASD], 30 typically-developing [TD]), with an age range of 1.35-8.23 years. Spindle metrics, including chirp, and slow oscillation (SO) characteristics were compared between groups. SO and fast and slow spindle (FS, SS) interactions were also investigated. Secondary analyses were performed assessing behavioural data associations, as well as exploratory cohort comparisons to children with non-autism developmental delay (DD). Results Posterior FS and SS chirp was significantly more negative in ASD than TD. Both groups had comparable intra-spindle frequency range and variance. Frontal and central SO amplitude were decreased in ASD. In contrast to previous manual findings, no differences were detected in other spindle or SO metrics. The ASD group displayed a higher parietal coupling angle. No differences were observed in phase-frequency coupling. The DD group demonstrated lower FS chirp and higher coupling angle than TD. Parietal SS chirp was positively associated with full developmental quotient. Conclusions For the first time spindle chirp was investigated in autism and was found to be significantly more negative than in TD in this large cohort of young children. This finding strengthens previous reports of spindle and SO abnormalities in ASD. Further investigation of spindle chirp in healthy and clinical populations across development will help elucidate the significance of this difference and better understand this novel metric.
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Affiliation(s)
- D Cumming
- National Institute of Mental Health, NIH, Bethesda, MD, USA
| | - N Kozhemiako
- Brigham and Women’s Hospital & Harvard Medical School, Boston, MA, USA
| | - AE Thurm
- National Institute of Mental Health, NIH, Bethesda, MD, USA
| | - CA Farmer
- National Institute of Mental Health, NIH, Bethesda, MD, USA
| | - SW Purcell
- Brigham and Women’s Hospital & Harvard Medical School, Boston, MA, USA
| | - AW Buckley
- National Institute of Mental Health, NIH, Bethesda, MD, USA
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Glaba P, Latka M, Krause MJ, Kroczka S, Kuryło M, Kaczorowska-Frontczak M, Walas W, Jernajczyk W, Sebzda T, West BJ. EEG phase synchronization during absence seizures. Front Neuroinform 2023; 17:1169584. [PMID: 37404335 PMCID: PMC10317177 DOI: 10.3389/fninf.2023.1169584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2023] [Accepted: 05/25/2023] [Indexed: 07/06/2023] Open
Abstract
Absence seizures-generalized rhythmic spike-and-wave discharges (SWDs) are the defining property of childhood (CAE) and juvenile (JAE) absence epilepsies. Such seizures are the most compelling examples of pathological neuronal hypersynchrony. All the absence detection algorithms proposed so far have been derived from the properties of individual SWDs. In this work, we investigate EEG phase synchronization in patients with CAE/JAE and healthy subjects to explore the possibility of using the wavelet phase synchronization index to detect seizures and quantify their disorganization (fragmentation). The overlap of the ictal and interictal probability density functions was high enough to preclude effective seizure detection based solely on changes in EEG synchronization. We used a machine learning classifier with the phase synchronization index (calculated for 1 s data segments with 0.5 s overlap) and the normalized amplitude as features to detect generalized SWDs. Using 19 channels (10-20 setup), we identified 99.2% of absences. However, the overlap of the segments classified as ictal with seizures was only 83%. The analysis showed that seizures were disorganized in approximately half of the 65 subjects. On average, generalized SWDs lasted about 80% of the duration of abnormal EEG activity. The disruption of the ictal rhythm can manifest itself as the disappearance of epileptic spikes (with high-amplitude delta waves persisting), transient cessation of epileptic discharges, or loss of global synchronization. The detector can analyze a real-time data stream. Its performance is good for a six-channel setup (Fp1, Fp2, F7, F8, O1, O2), which can be implemented as an unobtrusive EEG headband. False detections are rare for controls and young adults (0.03% and 0.02%, respectively). In patients, they are more frequent (0.5%), but in approximately 82% cases, classification errors are caused by short epileptiform discharges. Most importantly, the proposed detector can be applied to parts of EEG with abnormal EEG activity to quantitatively determine seizure fragmentation. This property is important because a previous study reported that the probability of disorganized discharges is eight times higher in JAE than in CAE. Future research must establish whether seizure properties (frequency, length, fragmentation, etc.) and clinical characteristics can help distinguish CAE and JAE.
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Affiliation(s)
- Pawel Glaba
- Department of Biomedical Engineering, Wroclaw University of Science and Technology, Wrocław, Poland
| | - Miroslaw Latka
- Department of Biomedical Engineering, Wroclaw University of Science and Technology, Wrocław, Poland
| | | | - Sławomir Kroczka
- Department of Child Neurology, Jagiellonian University Medical College, Kraków, Poland
| | - Marta Kuryło
- Department of Pediatric Neurology, T. Marciniak Hospital, Wrocław, Poland
| | | | - Wojciech Walas
- Department of Anesthesiology, Intensive Care and Regional Extracorporeal Membrane Oxygenation (ECMO) Center, Institute of Medical Sciences, University of Opole, Opole, Poland
| | - Wojciech Jernajczyk
- Clinical Neurophysiology, Institute of Psychiatry and Neurology, Warszawa, Poland
| | - Tadeusz Sebzda
- Department of Physiology and Pathophysiology, Medical University of Wroclaw, Wrocław, Poland
| | - Bruce J. West
- Center for Nonlinear Science, University of North Texas, Denton, TX, United States
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Sitnikova E, Pupikina M, Rutskova E. Alpha2 Adrenergic Modulation of Spike-Wave Epilepsy: Experimental Study of Pro-Epileptic and Sedative Effects of Dexmedetomidine. Int J Mol Sci 2023; 24:9445. [PMID: 37298397 PMCID: PMC10254047 DOI: 10.3390/ijms24119445] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 05/20/2023] [Accepted: 05/26/2023] [Indexed: 06/12/2023] Open
Abstract
In the present report, we evaluated adrenergic mechanisms of generalized spike-wave epileptic discharges (SWDs), which are the encephalographic hallmarks of idiopathic generalized epilepsies. SWDs link to a hyper-synchronization in the thalamocortical neuronal activity. We unclosed some alpha2-adrenergic mechanisms of sedation and provocation of SWDs in rats with spontaneous spike-wave epilepsy (WAG/Rij and Wistar) and in control non-epileptic rats (NEW) of both sexes. Dexmedetomidine (Dex) was a highly selective alpha-2 agonist (0.003-0.049 mg/kg, i.p.). Injections of Dex did not elicit de novo SWDs in non-epileptic rats. Dex can be used to disclose the latent form of spike-wave epilepsy. Subjects with long-lasting SWDs at baseline were at high risk of absence status after activation of alpha2- adrenergic receptors. We create the concept of alpha1- and alpha2-ARs regulation of SWDs via modulation of thalamocortical network activity. Dex induced the specific abnormal state favorable for SWDs-"alpha2 wakefulness". Dex is regularly used in clinical practice. EEG examination in patients using low doses of Dex might help to diagnose the latent forms of absence epilepsy (or pathology of cortico-thalamo-cortical circuitry).
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Affiliation(s)
- Evgenia Sitnikova
- Institute of the Higher Nervous Activity and Neurophysiology of Russian Academy of Sciences, Butlerova Str., 5A, 117485 Moscow, Russia (E.R.)
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Zobaer MS, Domenico CM, Perotti L, Ji D, Dabaghian Y. Rapid Spectral Dynamics in Hippocampal Oscillons. Front Comput Neurosci 2022; 16:880742. [PMID: 35757231 PMCID: PMC9226310 DOI: 10.3389/fncom.2022.880742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 04/12/2022] [Indexed: 11/16/2022] Open
Abstract
Neurons in the brain are submerged into oscillating extracellular potential produced by synchronized synaptic currents. The dynamics of these oscillations is one of the principal characteristics of neurophysiological activity, broadly studied in basic neuroscience and used in applications. However, our interpretation of the brain waves' structure and hence our understanding of their functions depend on the mathematical and computational approaches used for data analysis. The oscillatory nature of the wave dynamics favors Fourier methods, which have dominated the field for several decades and currently constitute the only systematic approach to brain rhythms. In the following study, we outline an alternative framework for analyzing waves of local field potentials (LFPs) and discuss a set of new structures that it uncovers: a discrete set of frequency-modulated oscillatory processes—the brain wave oscillons and their transient spectral dynamics.
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Affiliation(s)
- M S Zobaer
- Department of Neurology, McGovern Medical Center at Houston, The University of Texas, Houston, TX, United States
| | - Carli M Domenico
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, United States
| | - Luca Perotti
- Department of Physics, Texas Southern University, Houston, TX, United States
| | - Daoyun Ji
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, United States
| | - Yuri Dabaghian
- Department of Neurology, McGovern Medical Center at Houston, The University of Texas, Houston, TX, United States
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Zhuravlev M, Runnova A, Smirnov K, Sitnikova E. Spike-Wave Seizures, NREM Sleep and Micro-Arousals in WAG/Rij Rats with Genetic Predisposition to Absence Epilepsy: Developmental Aspects. Life (Basel) 2022; 12:life12040576. [PMID: 35455067 PMCID: PMC9026846 DOI: 10.3390/life12040576] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2022] [Revised: 03/22/2022] [Accepted: 04/10/2022] [Indexed: 11/24/2022] Open
Abstract
The current study was done in Wistar Albino Glaxo Rijswijk (WAG/Rij) rats, which are genetically prone to develop spontaneous spike-wave discharges (SWDs) and are widely used as a genetic model of absence epilepsy. Here, we examined functional links between sleep and spike-wave epilepsy in aging WAG/Rij rats using advanced techniques of EEG analysis. SWDs, periods of NREM sleep and micro-arousals were automatically detected in three-channel epidural EEG recorded in freely moving WAG/Rij rats consequently at the age 5, 7 and 9 months. We characterized the developmental profile of spike-wave epilepsy in drug-naïve WAG/Rij rats and defined three epi-phenotypes—severe, mild and minor epilepsy. Age-related changes of SWDs were associated with changes in NREM sleep. Several signs of NREM sleep fragmentation were defined in epileptic WAG/Rij rats. It seems that spike-wave epilepsy per se promotes micro-arousals during NREM sleep. However, subjects with a higher number of micro-arousals (and NREM sleep episodes) at the age of 5 months were characterized by a reduction of SWDs between 5 and 7 months of age.
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Affiliation(s)
- Maxim Zhuravlev
- National Medical Research Center for Therapy and Preventive Medicine, Petroverigskiy Pereulok, 10(3), 101990 Moscow, Russia;
- Correspondence:
| | - Anastasiya Runnova
- National Medical Research Center for Therapy and Preventive Medicine, Petroverigskiy Pereulok, 10(3), 101990 Moscow, Russia;
| | - Kirill Smirnov
- Institute of the Higher Nervous Activity and Neurophysiology of Russian Academy of Sciences, Butlerova Str., 5A, 117485 Moscow, Russia; (K.S.); (E.S.)
| | - Evgenia Sitnikova
- Institute of the Higher Nervous Activity and Neurophysiology of Russian Academy of Sciences, Butlerova Str., 5A, 117485 Moscow, Russia; (K.S.); (E.S.)
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Golden subject is everyone: A subject transfer neural network for motor imagery-based brain computer interfaces. Neural Netw 2022; 151:111-120. [DOI: 10.1016/j.neunet.2022.03.025] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 02/09/2022] [Accepted: 03/22/2022] [Indexed: 12/24/2022]
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Merten JE, Villarrubia SA, Holly KS, Kemp AS, Kumler AC, Larson-Prior LJ, Murray TA. The use of rodent models to better characterize the relationship among epilepsy, sleep, and memory. Epilepsia 2022; 63:525-536. [PMID: 34985784 DOI: 10.1111/epi.17161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 12/20/2021] [Accepted: 12/21/2021] [Indexed: 11/28/2022]
Abstract
Epilepsy, a neurological disorder characterized by recurrent seizures, is known to be associated with impaired sleep and memory. Although the specific mechanisms underlying these impairments are uncertain, the known role of sleep in memory consolidation suggests a potential relationship may exist between seizure activity, disrupted sleep, and memory impairment. A possible mediator in this relationship is the sleep spindle, the characteristic electroencephalographic (EEG) feature of non-rapid-eye-movement (NREM) sleep in humans and other mammals. Growing evidence supports the idea that sleep spindles, having thalamic origin, may mediate the process of long-term memory storage and plasticity by generating neuronal conditions that favor these processes. To study this potential relationship, a single model in which memory, sleep, and epilepsy can be simultaneously observed is of necessity. Rodent models of epilepsy appear to fulfill this requirement. Not only do rodents express both sleep spindles and seizure-induced sleep disruptions, but they also allow researchers to invasively study neurobiological processes both pre- and post- epileptic onset via the artificial induction of epilepsy (a practice that cannot be carried out in human subjects). However, the degree to which sleep architecture differs between rodents and humans makes direct comparisons between the two challenging. This review addresses these challenges and concludes that rodent sleep studies are useful in observing the functional roles of sleep and how they are affected by epilepsy.
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Affiliation(s)
- John E Merten
- College of Medicine, University of Arkansas for Medical Sciences (UAMS), Little Rock, Arkansas, USA
| | | | - Kevin S Holly
- Biomedical Engineering, Louisiana Tech University, Ruston, Louisina, USA
| | - Aaron S Kemp
- Departments of Psychiatry and Biomedical Informatics, UAMS, Little Rock, Arkansas, USA
| | - Allison C Kumler
- Biomedical Engineering, Louisiana Tech University, Ruston, Louisina, USA
| | - Linda J Larson-Prior
- Departments of Psychiatry and Biomedical Informatics, UAMS, Little Rock, Arkansas, USA.,Departments of Neurology, Neurobiology & Developmental Sciences, Pediatrics, UAMS, Little Rock, Arkansas, USA
| | - Teresa A Murray
- Biomedical Engineering, Louisiana Tech University, Ruston, Louisina, USA
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Glaba P, Latka M, Krause MJ, Kroczka S, Kuryło M, Kaczorowska-Frontczak M, Walas W, Jernajczyk W, Sebzda T, West BJ. Absence Seizure Detection Algorithm for Portable EEG Devices. Front Neurol 2021; 12:685814. [PMID: 34267723 PMCID: PMC8275922 DOI: 10.3389/fneur.2021.685814] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 06/03/2021] [Indexed: 11/13/2022] Open
Abstract
Absence seizures are generalized nonmotor epileptic seizures with abrupt onset and termination. Transient impairment of consciousness and spike-slow wave discharges (SWDs) in EEG are their characteristic manifestations. This type of seizure is severe in two common pediatric syndromes: childhood (CAE) and juvenile (JAE) absence epilepsy. The appearance of low-cost, portable EEG devices has paved the way for long-term, remote monitoring of CAE and JAE patients. The potential benefits of this kind of monitoring include facilitating diagnosis, personalized drug titration, and determining the duration of pharmacotherapy. Herein, we present a novel absence detection algorithm based on the properties of the complex Morlet continuous wavelet transform of SWDs. We used a dataset containing EEGs from 64 patients (37 h of recordings with almost 400 seizures) and 30 age and sex-matched controls (9 h of recordings) for development and testing. For seizures lasting longer than 2 s, the detector, which analyzed two bipolar EEG channels (Fp1-T3 and Fp2-T4), achieved a sensitivity of 97.6% with 0.7/h detection rate. In the patients, all false detections were associated with epileptiform discharges, which did not yield clinical manifestations. When the duration threshold was raised to 3 s, the false detection rate fell to 0.5/h. The overlap of automatically detected seizures with the actual seizures was equal to ~96%. For EEG recordings sampled at 250 Hz, the one-channel processing speed for midrange smartphones running Android 10 (about 0.2 s per 1 min of EEG) was high enough for real-time seizure detection.
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Affiliation(s)
- Pawel Glaba
- Department of Biomedical Engineering, Wroclaw University of Science and Technology, Wroclaw, Poland
| | - Miroslaw Latka
- Department of Biomedical Engineering, Wroclaw University of Science and Technology, Wroclaw, Poland
| | | | - Sławomir Kroczka
- Department of Child Neurology, Jagiellonian University Medical College, Krakow, Poland
| | - Marta Kuryło
- Department of Pediatric Neurology, T. Marciniak Hospital, Wrocław, Poland
| | | | - Wojciech Walas
- Paediatric and Neonatal Intensive Care Unit, Institute of Medical Sciences, University of Opole, Opole, Poland
| | - Wojciech Jernajczyk
- Clinical Neurophysiology, Institute of Psychiatry and Neurology, Warszawa, Poland
| | - Tadeusz Sebzda
- Department of Pathophysiology, Wroclaw Medical University, Wroclaw, Poland
| | - Bruce J West
- Office of the Director, Army Research Office, Research Triangle Park, Durham, NC, United States
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Frolov N, Hramov A. Extreme synchronization events in a Kuramoto model: The interplay between resource constraints and explosive transitions. CHAOS (WOODBURY, N.Y.) 2021; 31:063103. [PMID: 34241300 DOI: 10.1063/5.0055156] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Accepted: 05/17/2021] [Indexed: 06/13/2023]
Abstract
Many living and artificial systems possess structural and dynamical properties of complex networks. One of the most exciting living networked systems is the brain, in which synchronization is an essential mechanism of its normal functioning. On the other hand, excessive synchronization in neural networks reflects undesired pathological activity, including various forms of epilepsy. In this context, network-theoretical approach and dynamical modeling may uncover deep insight into the origins of synchronization-related brain disorders. However, many models do not account for the resource consumption needed for the neural networks to synchronize. To fill this gap, we introduce a phenomenological Kuramoto model evolving under the excitability resource constraints. We demonstrate that the interplay between increased excitability and explosive synchronization induced by the hierarchical organization of the network forces the system to generate short-living extreme synchronization events, which are well-known signs of epileptic brain activity. Finally, we establish that the network units occupying the medium levels of hierarchy most strongly contribute to the birth of extreme events emphasizing the focal nature of their origin.
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Affiliation(s)
- Nikita Frolov
- Neuroscience and Cognitive Technology Laboratory, Center for Technologies in Robotics and Mechatronics Components, Innopolis University, 420500 Innopolis, The Republic of Tatarstan, Russia
| | - Alexander Hramov
- Neuroscience and Cognitive Technology Laboratory, Center for Technologies in Robotics and Mechatronics Components, Innopolis University, 420500 Innopolis, The Republic of Tatarstan, Russia
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Automatic wavelet-based assessment of behavioral sleep using multichannel electrocorticography in rats. Sleep Breath 2021; 25:2251-2258. [PMID: 33768413 DOI: 10.1007/s11325-021-02357-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Revised: 01/11/2021] [Accepted: 03/19/2021] [Indexed: 10/21/2022]
Abstract
PURPOSE During the last decade, the reported prevalence of sleep-disordered breathing in adults has been rapidly increasing. Therefore, automatic methods of sleep assessment are of particular interest. In a framework of translational neuroscience, this study introduces a reliable automatic detection system of behavioral sleep in laboratory rats based on the signal recorded at the cortical surface without requiring electromyography. METHODS Experimental data were obtained in 16 adult male WAG/Rij rats at the age of 9 months. Electrocorticographic signals (ECoG) were recorded in freely moving rats during the entire day (22.5 ± 2.2 h). Automatic wavelet-based assessment of behavioral sleep (BS) was proposed. The performance of this wavelet-based method was validated in a group of rats with genetic predisposition to absence epilepsy (n=16) based on visual analysis of their behavior in simultaneously recorded video. RESULTS The accuracy of automatic sleep detection was 98% over a 24-h period. An automatic BS assessment method can be adjusted for detecting short arousals during sleep (microarousals) with various duration. CONCLUSIONS These findings suggest that automatic wavelet-based assessment of behavioral sleep can be used for assessment of sleep quality. Current analysis indicates a temporal relationship between microarousals, sleep, and epileptic discharges in genetically prone subjects.
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Jiang D, Ma Y, Wang Y. A robust two-stage sleep spindle detection approach using single-channel EEG. J Neural Eng 2021; 18. [PMID: 33326950 DOI: 10.1088/1741-2552/abd463] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2020] [Accepted: 12/16/2020] [Indexed: 11/12/2022]
Abstract
Objective.Sleep spindles in the electroencephalogram (EEG) are significant in sleep analysis related to cognitive functions and neurological diseases, and thus are of great clinical interests. An automatic sleep spindle detection algorithm could help decrease the workload of visual inspection by sleep clinicians.Approach.We propose a robust two-stage approach for sleep spindle detection using single-channel EEG. In the pre-detection stage, a stable number of sleep spindle candidates are discovered using the Teager energy operator with adaptive parameters, where the number of true sleep spindles are ensured as many as possible to maximize the detection sensitivity. In the refinement stage, representative features are designed and a bagging classifier is exploited to further recognize the true spindles from all candidates, in order to remove the false detection in the first stage.Main results.Using the union of all experts' annotations as the ground truth, its performance outperforms state-of-the-art works in terms of F1-score (F1) on two public databases (F1: 0.814 for Montreal archive of sleep studies dataset and 0.690 for DREAMS dataset). The annotation consistency between the proposed method and certain selected expert as the trainer could exceed the consistency between two human experts.Significance.The proposed sleep spindle detection method is based on single-channel EEG thus introduces as less interference to the subjects as possible. It is robust to subject variations between databases and is capable of learning certain annotation rules, which is expected to help facilitate the manual labeling of certain experts. In addition, this method is fast enough for real-time applications.
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Affiliation(s)
- Dihong Jiang
- Department of Electronic Engineering, Fudan University, Shanghai, People's Republic of China
| | - Yu Ma
- Department of Electronic Engineering, Fudan University, Shanghai, People's Republic of China.,Key Laboratory of Medical Imaging Computing and Computer Assisted Intervention (MICCAI) of Shanghai, Shanghai, People's Republic of China
| | - Yuanyuan Wang
- Department of Electronic Engineering, Fudan University, Shanghai, People's Republic of China.,Key Laboratory of Medical Imaging Computing and Computer Assisted Intervention (MICCAI) of Shanghai, Shanghai, People's Republic of China
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14
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Statistical Model-Based Classification to Detect Patient-Specific Spike-and-Wave in EEG Signals. COMPUTERS 2020. [DOI: 10.3390/computers9040085] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Spike-and-wave discharge (SWD) pattern detection in electroencephalography (EEG) is a crucial signal processing problem in epilepsy applications. It is particularly important for overcoming time-consuming, difficult, and error-prone manual analysis of long-term EEG recordings. This paper presents a new method to detect SWD, with a low computational complexity making it easily trained with data from standard medical protocols. Precisely, EEG signals are divided into time segments for which the continuous Morlet 1-D wavelet decomposition is computed. The generalized Gaussian distribution (GGD) is fitted to the resulting coefficients and their variance and median are calculated. Next, a k-nearest neighbors (k-NN) classifier is trained to detect the spike-and-wave patterns, using the scale parameter of the GGD in addition to the variance and the median. Experiments were conducted using EEG signals from six human patients. Precisely, 106 spike-and-wave and 106 non-spike-and-wave signals were used for training, and 96 other segments for testing. The proposed SWD classification method achieved 95% sensitivity (True positive rate), 87% specificity (True Negative Rate), and 92% accuracy. These promising results set the path for new research to study the causes underlying the so-called absence epilepsy in long-term EEG recordings.
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15
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Bandarabadi M, Herrera CG, Gent TC, Bassetti C, Schindler K, Adamantidis AR. A role for spindles in the onset of rapid eye movement sleep. Nat Commun 2020; 11:5247. [PMID: 33067436 PMCID: PMC7567828 DOI: 10.1038/s41467-020-19076-2] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Accepted: 09/21/2020] [Indexed: 12/17/2022] Open
Abstract
Sleep spindle generation classically relies on an interplay between the thalamic reticular nucleus (TRN), thalamo-cortical (TC) relay cells and cortico-thalamic (CT) feedback during non-rapid eye movement (NREM) sleep. Spindles are hypothesized to stabilize sleep, gate sensory processing and consolidate memory. However, the contribution of non-sensory thalamic nuclei in spindle generation and the role of spindles in sleep-state regulation remain unclear. Using multisite thalamic and cortical LFP/unit recordings in freely behaving mice, we show that spike-field coupling within centromedial and anterodorsal (AD) thalamic nuclei is as strong as for TRN during detected spindles. We found that spindle rate significantly increases before the onset of rapid eye movement (REM) sleep, but not wakefulness. The latter observation is consistent with our finding that enhancing spontaneous activity of TRN cells or TRN-AD projections using optogenetics increase spindle rate and transitions to REM sleep. Together, our results extend the classical TRN-TC-CT spindle pathway to include non-sensory thalamic nuclei and implicate spindles in the onset of REM sleep. During NREM sleep, spindles emerge from thalamocortical interactions. Here the authors carry out multisite thalamic and cortical recordings in freely behaving mice, to investigate the role of other non-classical thalamic sites in sleep spindle generation.
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Affiliation(s)
- Mojtaba Bandarabadi
- Department of Neurology, Zentrum für Experimentelle Neurologie, Inselspital University Hospital Bern, Bern, Switzerland.,Department of Neurology, Sleep-Wake-Epilepsy Center, Inselspital University Hospital Bern, Bern, Switzerland.,Department of Biomedical Sciences, University of Lausanne, Lausanne, Switzerland
| | - Carolina Gutierrez Herrera
- Department of Neurology, Zentrum für Experimentelle Neurologie, Inselspital University Hospital Bern, Bern, Switzerland.,Department of Biomedical Research, University of Bern, Bern, Switzerland
| | - Thomas C Gent
- Department of Neurology, Zentrum für Experimentelle Neurologie, Inselspital University Hospital Bern, Bern, Switzerland.,Department of Biomedical Research, University of Bern, Bern, Switzerland
| | - Claudio Bassetti
- Department of Neurology, Zentrum für Experimentelle Neurologie, Inselspital University Hospital Bern, Bern, Switzerland.,Department of Neurology, Sleep-Wake-Epilepsy Center, Inselspital University Hospital Bern, Bern, Switzerland
| | - Kaspar Schindler
- Department of Neurology, Zentrum für Experimentelle Neurologie, Inselspital University Hospital Bern, Bern, Switzerland.,Department of Neurology, Sleep-Wake-Epilepsy Center, Inselspital University Hospital Bern, Bern, Switzerland
| | - Antoine R Adamantidis
- Department of Neurology, Zentrum für Experimentelle Neurologie, Inselspital University Hospital Bern, Bern, Switzerland. .,Department of Neurology, Sleep-Wake-Epilepsy Center, Inselspital University Hospital Bern, Bern, Switzerland. .,Department of Biomedical Research, University of Bern, Bern, Switzerland.
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16
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van Luijtelaar G, van Oijen G. Establishing Drug Effects on Electrocorticographic Activity in a Genetic Absence Epilepsy Model: Advances and Pitfalls. Front Pharmacol 2020; 11:395. [PMID: 32351383 PMCID: PMC7175742 DOI: 10.3389/fphar.2020.00395] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Accepted: 03/16/2020] [Indexed: 12/18/2022] Open
Abstract
The genetic rat models such as rats of the WAG/Rij strain and GAERS were developed as models for generalized genetic epilepsy and in particular for childhood absence epilepsy. These animal models were described in the eighties of the previous century and both models have, among others, face, construct and predictive validity. Both models were and are currently used as models to predict the action of antiepileptic medication and other experimental treatments, to elucidate neurobiological mechanisms of spike-wave discharges and epileptogenesis. Although the electroencephalagram (EEG)/electrocorticogram (ECoG) is imperative for establishing absence seizures and to quantify the for absence epilepsy typical spike-wave discharges, monitoring the animals behavior is equally necessary. Here an overview is given regarding the design of drug evaluation studies, which animals to use, classical and new EEG variables, the monitoring and quantification of the behavior of the rats, some pitfalls regarding the interpretation of the data, and some developments in EEG technology.
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Affiliation(s)
| | - Gerard van Oijen
- Donders Centre for Cognition, Radboud University, Nijmegen, Netherlands
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17
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Giannakos MN, Sharma K, Pappas IO, Kostakos V, Velloso E. Multimodal data as a means to understand the learning experience. INTERNATIONAL JOURNAL OF INFORMATION MANAGEMENT 2019. [DOI: 10.1016/j.ijinfomgt.2019.02.003] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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18
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Visual and kinesthetic modes affect motor imagery classification in untrained subjects. Sci Rep 2019; 9:9838. [PMID: 31285468 PMCID: PMC6614413 DOI: 10.1038/s41598-019-46310-9] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2018] [Accepted: 06/21/2019] [Indexed: 11/20/2022] Open
Abstract
The understanding of neurophysiological mechanisms responsible for motor imagery (MI) is essential for the development of brain-computer interfaces (BCI) and bioprosthetics. Our magnetoencephalographic (MEG) experiments with voluntary participants confirm the existence of two types of motor imagery, kinesthetic imagery (KI) and visual imagery (VI), distinguished by activation and inhibition of different brain areas in motor-related α- and β-frequency regions. Although the brain activity corresponding to MI is usually observed in specially trained subjects or athletes, we show that it is also possible to identify particular features of MI in untrained subjects. Similar to real movement, KI implies muscular sensation when performing an imaginary moving action that leads to event-related desynchronization (ERD) of motor-associated brain rhythms. By contrast, VI refers to visualization of the corresponding action that results in event-related synchronization (ERS) of α- and β-wave activity. A notable difference between KI and VI groups occurs in the frontal brain area. In particular, the analysis of evoked responses shows that in all KI subjects the activity in the frontal cortex is suppressed during MI, while in the VI subjects the frontal cortex is always active. The accuracy in classification of left-arm and right-arm MI using artificial intelligence is similar for KI and VI. Since untrained subjects usually demonstrate the VI imagery mode, the possibility to increase the accuracy for VI is in demand for BCIs. The application of artificial neural networks allows us to classify MI in raising right and left arms with average accuracy of 70% for both KI and VI using appropriate filtration of input signals. The same average accuracy is achieved by optimizing MEG channels and reducing their number to only 13.
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20
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Spontaneous Recurrent Absence Seizure-like Events in Wild-Caught Rats. J Neurosci 2019; 39:4829-4841. [PMID: 30971439 DOI: 10.1523/jneurosci.1167-18.2019] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2018] [Revised: 03/09/2019] [Accepted: 03/27/2019] [Indexed: 11/21/2022] Open
Abstract
Absence epilepsy is a heritable human neurological disorder characterized by brief nonconvulsive seizures with behavioral arrest, moderate-to-severe loss of consciousness (absence), and distinct spike-wave discharges (SWDs) in the EEG and electrocorticogram (ECoG). Genetic models of this disorder have been created by selectively inbreeding rats for absence seizure-like events with similar electrical and behavioral characteristics. However, these events are also common in outbred laboratory rats, raising concerns about whether SWD/immobility accurately reflects absence epilepsy as opposed to "normal" rodent behavior. We hypothesized that, if SWD/immobility models absence seizures, it would not exist in wild-caught rats due to the pressures of natural selection. To test this hypothesis, we compared chronic video/electrocorticogram recordings from male and female wild-caught (Brown-Norway [BN]) rats to recordings from laboratory outbred BN, outbred Long-Evans, and inbred WAG/Rij rats (i.e., a model of absence epilepsy). Wild-caught BN rats displayed absence-like SWD/immobility events that were highly similar to outbred BN rats in terms of spike-wave morphology, frequency, diurnal rhythmicity, associated immobility, and sensitivity to the anti-absence drug, ethosuximide; however, SWD bursts were less frequent and of shorter duration in wild-caught and outbred BN rats than the outbred Long-Evans and inbred WAG/Rij strains. We conclude that SWD/immobility in rats does not represent absence seizures, although they appear to have many similarities. In wild rats, SWD/immobility appears to represent normal brain activity that does not reduce survival in natural environments, a conclusion that logically extends to outbred laboratory rats and possibly to those that have been inbred to model absence epilepsy.SIGNIFICANCE STATEMENT Spike-wave discharges (SWDs), behavioral arrest, and diminished consciousness are cardinal signs of seizures in human absence epilepsy and are used to model this disorder in inbred rats. These characteristics, however, are routinely found in outbred laboratory rats, leading to debate on whether SWD/immobility is a valid model of absence seizures. The SWD/immobility events in wild-caught rats appear equivalent to those found in outbred and inbred rat strains, except for lower incidence and shorter durations. Our results indicate that the electrophysiological and behavioral characteristics of events underlying hypothetical absence epilepsy in rodent models are found in wild rats captured in their natural environment. Other criteria beyond observation of SWDs and associated immobility are required to objectively establish absence epilepsy in rat models.
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21
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Abstract
Neuronal activity in the brain generates synchronous oscillations of the Local Field Potential (LFP). The traditional analyses of the LFPs are based on decomposing the signal into simpler components, such as sinusoidal harmonics. However, a common drawback of such methods is that the decomposition primitives are usually presumed from the onset, which may bias our understanding of the signal’s structure. Here, we introduce an alternative approach that allows an impartial, high resolution, hands-off decomposition of the brain waves into a small number of discrete, frequency-modulated oscillatory processes, which we call oscillons. In particular, we demonstrate that mouse hippocampal LFP contain a single oscillon that occupies the θ-frequency band and a couple of γ-oscillons that correspond, respectively, to slow and fast γ-waves. Since the oscillons were identified empirically, they may represent the actual, physical structure of synchronous oscillations in neuronal ensembles, whereas Fourier-defined “brain waves” are nothing but poorly resolved oscillons.
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22
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Sahu S, Buhler E, Vermoyal JC, Watrin F, Represa A, Manent JB. Spontaneous epileptiform activity in a rat model of bilateral subcortical band heterotopia. Epilepsia 2018; 60:337-348. [PMID: 30597542 PMCID: PMC7027481 DOI: 10.1111/epi.14633] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Revised: 11/20/2018] [Accepted: 12/07/2018] [Indexed: 12/15/2022]
Abstract
OBJECTIVE Malformations of cortical development are common causes of intellectual disability and epilepsy, yet there is a crucial lack of relevant preclinical models associating seizures and cortical malformations. Here, we describe a novel rat model with bilateral subcortical band heterotopia (SBH) and examine whether this model develops spontaneous epileptic seizures. METHODS To generate bilateral SBH in rats, we combined RNAi-mediated knockdown of Dcx and in utero electroporation with a tripolar electrode configuration enabling simultaneous transfection of the two brain hemispheres. To determine whether bilateral SBH leads to epileptiform activity, rats of various ages were implanted for telemetric electrocorticographic recordings and histopathological examination was carried out at the end of the recording sessions. RESULTS By 2 months, rats with bilateral SBH showed nonconvulsive spontaneous seizures consisting of spike-and-wave discharges (SWDs) with dominant frequencies in the alpha and theta bands and secondarily in higher-frequency bands. SWDs occurred during both the dark and the light period, but were more frequent during quiet awake state than during sleep. Also, SWDs were more frequent and lasted longer at older ages. No sex differences were found. Although frequencies and durations of SWDs were found to be uncorrelated with the size of SBH, SWDs were initiated in some occasions from brain hemispheres comprising a larger SBH. Lastly, SWDs exhibited absence-like pharmacological properties, being temporarily alleviated by ethosuximide administration. SIGNIFICANCE This novel model of bilateral SBH with spontaneous epilepsy may potentially provide valuable new insights into causality between cortical malformations and seizures, and help translational research aiming at designing novel treatment strategies for epilepsy.
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Affiliation(s)
- Surajit Sahu
- Neurobiology Institute of the Mediterranean (INMED), Aix-Marseille University, French National Institute of Health and Medical Research (INSERM) UMR1249, Marseille, France
| | - Emmanuelle Buhler
- Neurobiology Institute of the Mediterranean (INMED), Aix-Marseille University, French National Institute of Health and Medical Research (INSERM) UMR1249, Marseille, France
| | - Jean-Christophe Vermoyal
- Neurobiology Institute of the Mediterranean (INMED), Aix-Marseille University, French National Institute of Health and Medical Research (INSERM) UMR1249, Marseille, France
| | - Françoise Watrin
- Neurobiology Institute of the Mediterranean (INMED), Aix-Marseille University, French National Institute of Health and Medical Research (INSERM) UMR1249, Marseille, France
| | - Alfonso Represa
- Neurobiology Institute of the Mediterranean (INMED), Aix-Marseille University, French National Institute of Health and Medical Research (INSERM) UMR1249, Marseille, France
| | - Jean-Bernard Manent
- Neurobiology Institute of the Mediterranean (INMED), Aix-Marseille University, French National Institute of Health and Medical Research (INSERM) UMR1249, Marseille, France
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23
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Smirnov K, Tsvetaeva D, Sitnikova E. Neonatal whisker trimming in WAG/Rij rat pups causes developmental delay, encourages maternal care and affects exploratory activity in adulthood. Brain Res Bull 2018; 140:120-131. [PMID: 29684552 DOI: 10.1016/j.brainresbull.2018.04.010] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2018] [Revised: 04/10/2018] [Accepted: 04/16/2018] [Indexed: 12/29/2022]
Abstract
WAG/Rij rats are genetically predisposed to absence epilepsy. Maternal behavior in WAG/Rij female rats is known to differ from that in non-epileptic females. We hypothesize that (1) mother's behavior may be changed as response to changes in pup's conditions; (2) sensory deprivation at the neonatal age affect learning and behavior in adulthood. All whiskers in WAG/Rij rat pups were trimmed daily during PN1-PN8. Maternal behavior was examined during the same period. It was found that in the control group, WAG/Rij females often demonstrated abnormally long (>1 min) repetitive purposeless stereotypical actions that were roughly classified as compulsive-like behavior. Mothers of the trimmed pups showed less compulsive-like behavior and more intensively interacted with pups and built better nests. Rat pups in the trimmed group had lower body weight on PN7-PN19 as compared to the control. In the trimmed group, maturation of motor skills and early behavioral patterns (i.e. walking, grooming, vertical activity, motor functions of forelimbs) showed 1-2 days delay in comparison to the control. At the age of 2-2.5 months, the locomotor activity in the trimmed rats differed from the control, but the level of anxiety was the same (the open field and the elevated plus maze). At the age of 6 months, the trimmed and control rats showed no differences in conditioned avoidance learning test, therefore, neonatal whisker trimming did not influence fear-based learning abilities in adulthood. It is hypothesized that an enhanced maternal care is capable to modulate development of brain functions in sensory deprived progeny.
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Affiliation(s)
- Kirill Smirnov
- Institute of Higher Nervous Activity and Neurophysiology of Russian Academy of Sciences, Butlerova str., 5A, Moscow, 117485, Russia.
| | - Daria Tsvetaeva
- Institute of Higher Nervous Activity and Neurophysiology of Russian Academy of Sciences, Butlerova str., 5A, Moscow, 117485, Russia
| | - Evgenia Sitnikova
- Institute of Higher Nervous Activity and Neurophysiology of Russian Academy of Sciences, Butlerova str., 5A, Moscow, 117485, Russia
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24
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Hramov AE, Maksimenko VA, Pchelintseva SV, Runnova AE, Grubov VV, Musatov VY, Zhuravlev MO, Koronovskii AA, Pisarchik AN. Classifying the Perceptual Interpretations of a Bistable Image Using EEG and Artificial Neural Networks. Front Neurosci 2017; 11:674. [PMID: 29255403 PMCID: PMC5722852 DOI: 10.3389/fnins.2017.00674] [Citation(s) in RCA: 68] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2017] [Accepted: 11/20/2017] [Indexed: 01/04/2023] Open
Abstract
In order to classify different human brain states related to visual perception of ambiguous images, we use an artificial neural network (ANN) to analyze multichannel EEG. The classifier built on the basis of a multilayer perceptron achieves up to 95% accuracy in classifying EEG patterns corresponding to two different interpretations of the Necker cube. The important feature of our classifier is that trained on one subject it can be used for the classification of EEG traces of other subjects. This result suggests the existence of common features in the EEG structure associated with distinct interpretations of bistable objects. We firmly believe that the significance of our results is not limited to visual perception of the Necker cube images; the proposed experimental approach and developed computational technique based on ANN can also be applied to study and classify different brain states using neurophysiological data recordings. This may give new directions for future research in the field of cognitive and pathological brain activity, and for the development of brain-computer interfaces.
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Affiliation(s)
- Alexander E Hramov
- REC "Artificial Intelligence Systems and Neurotechnology", Yuri Gagarin State Technical University of Saratov, Saratov, Russia.,Faculty of Nonlinear Processes, Saratov State University, Saratov, Russia
| | - Vladimir A Maksimenko
- REC "Artificial Intelligence Systems and Neurotechnology", Yuri Gagarin State Technical University of Saratov, Saratov, Russia
| | - Svetlana V Pchelintseva
- REC "Artificial Intelligence Systems and Neurotechnology", Yuri Gagarin State Technical University of Saratov, Saratov, Russia
| | - Anastasiya E Runnova
- REC "Artificial Intelligence Systems and Neurotechnology", Yuri Gagarin State Technical University of Saratov, Saratov, Russia
| | - Vadim V Grubov
- REC "Artificial Intelligence Systems and Neurotechnology", Yuri Gagarin State Technical University of Saratov, Saratov, Russia
| | - Vyacheslav Yu Musatov
- REC "Artificial Intelligence Systems and Neurotechnology", Yuri Gagarin State Technical University of Saratov, Saratov, Russia
| | - Maksim O Zhuravlev
- REC "Artificial Intelligence Systems and Neurotechnology", Yuri Gagarin State Technical University of Saratov, Saratov, Russia.,Faculty of Nonlinear Processes, Saratov State University, Saratov, Russia
| | - Alexey A Koronovskii
- REC "Artificial Intelligence Systems and Neurotechnology", Yuri Gagarin State Technical University of Saratov, Saratov, Russia.,Faculty of Nonlinear Processes, Saratov State University, Saratov, Russia
| | - Alexander N Pisarchik
- REC "Artificial Intelligence Systems and Neurotechnology", Yuri Gagarin State Technical University of Saratov, Saratov, Russia.,Center for Biomedical Technology, Technical University of Madrid, Madrid, Spain
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25
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Maksimenko VA, Lüttjohann A, Makarov VV, Goremyko MV, Koronovskii AA, Nedaivozov V, Runnova AE, van Luijtelaar G, Hramov AE, Boccaletti S. Macroscopic and microscopic spectral properties of brain networks during local and global synchronization. Phys Rev E 2017; 96:012316. [PMID: 29347072 DOI: 10.1103/physreve.96.012316] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2017] [Indexed: 11/07/2022]
Abstract
We introduce a practical and computationally not demanding technique for inferring interactions at various microscopic levels between the units of a network from the measurements and the processing of macroscopic signals. Starting from a network model of Kuramoto phase oscillators, which evolve adaptively according to homophilic and homeostatic adaptive principles, we give evidence that the increase of synchronization within groups of nodes (and the corresponding formation of synchronous clusters) causes also the defragmentation of the wavelet energy spectrum of the macroscopic signal. Our methodology is then applied to getting a glance into the microscopic interactions occurring in a neurophysiological system, namely, in the thalamocortical neural network of an epileptic brain of a rat, where the group electrical activity is registered by means of multichannel EEG. We demonstrate that it is possible to infer the degree of interaction between the interconnected regions of the brain during different types of brain activities and to estimate the regions' participation in the generation of the different levels of consciousness.
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Affiliation(s)
- Vladimir A Maksimenko
- Yuri Gagarin State Technical University of Saratov, REC "Nonlinear Dynamics of Complex Systems," Saratov 410054, Russia
| | - Annika Lüttjohann
- University of Münster, Institute of Physiology I, Münster 48149, Germany
| | - Vladimir V Makarov
- Yuri Gagarin State Technical University of Saratov, REC "Nonlinear Dynamics of Complex Systems," Saratov 410054, Russia
| | - Mikhail V Goremyko
- Yuri Gagarin State Technical University of Saratov, REC "Nonlinear Dynamics of Complex Systems," Saratov 410054, Russia
| | - Alexey A Koronovskii
- Saratov State University, Faculty of Nonlinear Processes, Saratov 410012, Russia
| | - Vladimir Nedaivozov
- Yuri Gagarin State Technical University of Saratov, REC "Nonlinear Dynamics of Complex Systems," Saratov 410054, Russia
| | - Anastasia E Runnova
- Yuri Gagarin State Technical University of Saratov, REC "Nonlinear Dynamics of Complex Systems," Saratov 410054, Russia
| | | | - Alexander E Hramov
- Yuri Gagarin State Technical University of Saratov, REC "Nonlinear Dynamics of Complex Systems," Saratov 410054, Russia
| | - Stefano Boccaletti
- CNR-Institute for complex systems, Sesto Fiorentino 50019, Italy.,The Italian Embassy in Tel Aviv, Tel Aviv 68125, Israel
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Liu MY, Huang A, Huang NE. Evaluating and Improving Automatic Sleep Spindle Detection by Using Multi-Objective Evolutionary Algorithms. Front Hum Neurosci 2017; 11:261. [PMID: 28572762 PMCID: PMC5435763 DOI: 10.3389/fnhum.2017.00261] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Accepted: 05/02/2017] [Indexed: 11/13/2022] Open
Abstract
Sleep spindles are brief bursts of brain activity in the sigma frequency range (11–16 Hz) measured by electroencephalography (EEG) mostly during non-rapid eye movement (NREM) stage 2 sleep. These oscillations are of great biological and clinical interests because they potentially play an important role in identifying and characterizing the processes of various neurological disorders. Conventionally, sleep spindles are identified by expert sleep clinicians via visual inspection of EEG signals. The process is laborious and the results are inconsistent among different experts. To resolve the problem, numerous computerized methods have been developed to automate the process of sleep spindle identification. Still, the performance of these automated sleep spindle detection methods varies inconsistently from study to study. There are two reasons: (1) the lack of common benchmark databases, and (2) the lack of commonly accepted evaluation metrics. In this study, we focus on tackling the second problem by proposing to evaluate the performance of a spindle detector in a multi-objective optimization context and hypothesize that using the resultant Pareto fronts for deriving evaluation metrics will improve automatic sleep spindle detection. We use a popular multi-objective evolutionary algorithm (MOEA), the Strength Pareto Evolutionary Algorithm (SPEA2), to optimize six existing frequency-based sleep spindle detection algorithms. They include three Fourier, one continuous wavelet transform (CWT), and two Hilbert-Huang transform (HHT) based algorithms. We also explore three hybrid approaches. Trained and tested on open-access DREAMS and MASS databases, two new hybrid methods of combining Fourier with HHT algorithms show significant performance improvement with F1-scores of 0.726–0.737.
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Affiliation(s)
- Min-Yin Liu
- Department of Biomedical Sciences and Engineering, Institute of Systems Biology and Bioinformatics, National Central UniversityTaoyuan, Taiwan
| | - Adam Huang
- Research Center for Adaptive Data Analysis, National Central UniversityTaoyuan, Taiwan
| | - Norden E Huang
- Department of Biomedical Sciences and Engineering, Institute of Systems Biology and Bioinformatics, National Central UniversityTaoyuan, Taiwan.,Research Center for Adaptive Data Analysis, National Central UniversityTaoyuan, Taiwan
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Sleep spindle detection based on non-experts: A validation study. PLoS One 2017; 12:e0177437. [PMID: 28493938 PMCID: PMC5426701 DOI: 10.1371/journal.pone.0177437] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2016] [Accepted: 04/27/2017] [Indexed: 11/30/2022] Open
Abstract
Accurate and efficient detection of sleep spindles is a methodological challenge. The present study describes a method of using non-experts for manual detection of sleep spindles. We recruited five experts and 168 non-experts to manually identify spindles in stage N2 and stage N3 sleep data using a MATLAB interface. Scorers classified each spindle into definite and indefinite spindle (with weights of 1 and 0.5, respectively). First, a method of optimizing the thresholds of the expert/non-expert group consensus according to the results of experts and non-experts themselves is described. Using this method, we established expert and non-expert group standards from expert and non-expert scorers, respectively, and evaluated the performance of the non-expert group standards by compared with the expert group standard (termed EGS). The results indicated that the highest performance was the non-expert group standard when definite spindles were only considered (termed nEGS-1; F1 score = 0.78 for N2; 0.68 for N3). Second, four automatic spindle detection methods were compared with the EGS. We found that the performance of nEGS-1 versus EGS was higher than that of the four automated methods. Our results also showed positive correlation between the mean F1 score of individual expert in EGS and the F1 score of nEGS-1 versus EGS across 30 segments of stage N2 data (r = 0.61, P < 0.001). Further, we found that six and nine non-experts were needed to manually identify spindles in stages N2 and N3, respectively, while maintaining acceptable performance of nEGS-1 versus EGS (F1 score = 0.79 for N2; 0.64 for N3). In conclusion, this study establishes a detailed process for detection of sleep spindles by non-experts in a crowdsourcing scheme.
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28
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Bhattacharyya A, Pachori RB. A Multivariate Approach for Patient-Specific EEG Seizure Detection Using Empirical Wavelet Transform. IEEE Trans Biomed Eng 2017; 64:2003-2015. [PMID: 28092514 DOI: 10.1109/tbme.2017.2650259] [Citation(s) in RCA: 154] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
OBJECTIVE This paper investigates the multivariate oscillatory nature of electroencephalogram (EEG) signals in adaptive frequency scales for epileptic seizure detection. METHODS The empirical wavelet transform (EWT) has been explored for the multivariate signals in order to determine the joint instantaneous amplitudes and frequencies in signal adaptive frequency scales. The proposed multivariate extension of EWT has been studied on multivariate multicomponent synthetic signal, as well as on multivariate EEG signals of Children's Hospital Boston-Massachusetts Institute of Technology (CHB-MIT) scalp EEG database. In a moving-window-based analysis, 2-s-duration multivariate EEG signal epochs containing five automatically selected channels have been decomposed and three features have been extracted from each 1-s part of the 2-s-duration joint instantaneous amplitudes of multivariate EEG signals. The extracted features from each oscillatory level have been processed using a proposed feature processing step and joint features have been computed in order to achieve better discrimination of seizure and seizure-free EEG signal epochs. RESULTS The proposed detection method has been evaluated over 177 h of EEG records using six classifiers. We have achieved average sensitivity, specificity, and accuracy values as 97.91%, 99.57%, and 99.41%, respectively, using tenfold cross-validation method, which are higher than the compared state of art methods studied on this database. CONCLUSION Efficient detection of epileptic seizure is achieved when seizure events appear for long duration in hours long EEG recordings. SIGNIFICANCE The proposed method develops time-frequency plane for multivariate signals and builds patient-specific models for EEG seizure detection.
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Abbasi H, Bennet L, Gunn AJ, Unsworth CP. Identifying stereotypic evolving micro-scale seizures (SEMS) in the hypoxic-ischemic EEG of the pre-term fetal sheep with a wavelet type-II fuzzy classifier. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2016; 2016:973-976. [PMID: 28268486 DOI: 10.1109/embc.2016.7590864] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Perinatal hypoxic-ischemic encephalopathy (HIE) around the time of birth due to lack of oxygen can lead to debilitating neurological conditions such as epilepsy and cerebral palsy. Experimental data have shown that brain injury evolves over time, but during the first 6-8 hours after HIE the brain has recovered oxidative metabolism in a latent phase, and brain injury is reversible. Treatments such as therapeutic cerebral hypothermia (brain cooling) are effective when started during the latent phase, and continued for several days. Effectiveness of hypothermia is lost if started after the latent phase. Post occlusion monitoring of particular micro-scale transients in the hypoxic-ischemic (HI) Electroencephalogram (EEG), from an asphyxiated fetal sheep model in utero, could provide precursory evidence to identify potential biomarkers of injury when brain damage is still treatable. In our studies, we have reported how it is possible to automatically detect HI EEG transients in the form of spikes and sharp waves during the latent phase of the HI EEG of the preterm fetal sheep. This paper describes how to identify stereotypic evolving micro-scale seizures (SEMS) which have a relatively abrupt onset and termination in a frequency range of 1.8-3Hz (Delta waves) superimposed on a suppressed EEG amplitude background post occlusion. This research demonstrates how a Wavelet Type-II Fuzzy Logic System (WT-Type-II-FLS) can be used to automatically identify subtle abnormal SEMS that occur during the latent phase with a preliminary average validation overall performance of 78.71%±6.63 over the 390 minutes of the latent phase, post insult, using in utero pre-term hypoxic fetal sheep models.
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Automatic Identification of Interictal Epileptiform Discharges in Secondary Generalized Epilepsy. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2016; 2016:8701973. [PMID: 27379172 PMCID: PMC4917751 DOI: 10.1155/2016/8701973] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/10/2016] [Revised: 04/30/2016] [Accepted: 05/11/2016] [Indexed: 11/26/2022]
Abstract
Ictal epileptiform discharges (EDs) are characteristic signal patterns of scalp electroencephalogram (EEG) or intracranial EEG (iEEG) recorded from patients with epilepsy, which assist with the diagnosis and characterization of various types of epilepsy. The EEG signal, however, is often recorded from patients with epilepsy for a long period of time, and thus detection and identification of EDs have been a burden on medical doctors. This paper proposes a new method for automatic identification of two types of EDs, repeated sharp-waves (sharps), and runs of sharp-and-slow-waves (SSWs), which helps to pinpoint epileptogenic foci in secondary generalized epilepsy such as Lennox-Gastaut syndrome (LGS). In the experiments with iEEG data acquired from a patient with LGS, our proposed method detected EDs with an accuracy of 93.76% and classified three different signal patterns with a mean classification accuracy of 87.69%, which was significantly higher than that of a conventional wavelet-based method. Our study shows that it is possible to successfully detect and discriminate sharps and SSWs from background EEG activity using our proposed method.
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Koronovskii AA, Hramov AE, Grubov VV, Moskalenko OI, Sitnikova E, Pavlov AN. Coexistence of intermittencies in the neuronal network of the epileptic brain. Phys Rev E 2016; 93:032220. [PMID: 27078357 DOI: 10.1103/physreve.93.032220] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Indexed: 11/07/2022]
Abstract
Intermittent behavior occurs widely in nature. At present, several types of intermittencies are known and well-studied. However, consideration of intermittency has usually been limited to the analysis of cases when only one certain type of intermittency takes place. In this paper, we report on the temporal behavior of the complex neuronal network in the epileptic brain, when two types of intermittent behavior coexist and alternate with each other. We prove the presence of this phenomenon in physiological experiments with WAG/Rij rats being the model living system of absence epilepsy. In our paper, the deduced theoretical law for distributions of the lengths of laminar phases prescribing the power law with a degree of -2 agrees well with the experimental neurophysiological data.
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Affiliation(s)
- Alexey A Koronovskii
- Saratov State University, Astrakhanskaya 83, Saratov 410012, Russia.,Saratov State Technical University, Politehnicheskaja 77, Saratov 410056, Russia
| | - Alexander E Hramov
- Saratov State University, Astrakhanskaya 83, Saratov 410012, Russia.,Saratov State Technical University, Politehnicheskaja 77, Saratov 410056, Russia
| | - Vadim V Grubov
- Saratov State University, Astrakhanskaya 83, Saratov 410012, Russia.,Saratov State Technical University, Politehnicheskaja 77, Saratov 410056, Russia
| | - Olga I Moskalenko
- Saratov State University, Astrakhanskaya 83, Saratov 410012, Russia.,Saratov State Technical University, Politehnicheskaja 77, Saratov 410056, Russia
| | - Evgenia Sitnikova
- Saratov State University, Astrakhanskaya 83, Saratov 410012, Russia.,Institute of Higher Nervous Activity and Neurophysiology of Russian Academy of Science, Moscow, Russia
| | - Alexey N Pavlov
- Saratov State University, Astrakhanskaya 83, Saratov 410012, Russia.,Saratov State Technical University, Politehnicheskaja 77, Saratov 410056, Russia
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Enshaeifar S, Kouchaki S, Took CC, Sanei S. Quaternion Singular Spectrum Analysis of Electroencephalogram With Application in Sleep Analysis. IEEE Trans Neural Syst Rehabil Eng 2016; 24:57-67. [PMID: 26276995 DOI: 10.1109/tnsre.2015.2465177] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Handojoseno AMA, Shine JM, Nguyen TN, Tran Y, Lewis SJG, Nguyen HT. Analysis and Prediction of the Freezing of Gait Using EEG Brain Dynamics. IEEE Trans Neural Syst Rehabil Eng 2015; 23:887-96. [DOI: 10.1109/tnsre.2014.2381254] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Evaluation of an automated spike-and-wave complex detection algorithm in the EEG from a rat model of absence epilepsy. Neurosci Bull 2015; 31:601-10. [PMID: 26242485 DOI: 10.1007/s12264-015-1553-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2015] [Accepted: 05/19/2015] [Indexed: 10/23/2022] Open
Abstract
The aim of this prospective blinded study was to evaluate an automated algorithm for spike-and-wave discharge (SWD) detection applied to EEGs from genetic absence epilepsy rats from Strasbourg (GAERS). Five GAERS underwent four sessions of 20-min EEG recording. Each EEG was manually analyzed for SWDs longer than one second by two investigators and automatically using an algorithm developed in MATLAB®. The sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) were calculated for the manual (reference) versus the automatic (test) methods. The results showed that the algorithm had specificity, sensitivity, PPV and NPV >94%, comparable to published methods that are based on analyzing EEG changes in the frequency domain. This provides a good alternative as a method designed to mimic human manual marking in the time domain.
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van Luijtelaar G, Lüttjohann A, Makarov VV, Maksimenko VA, Koronovskii AA, Hramov AE. Methods of automated absence seizure detection, interference by stimulation, and possibilities for prediction in genetic absence models. J Neurosci Methods 2015. [PMID: 26213219 DOI: 10.1016/j.jneumeth.2015.07.010] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
BACKGROUND Genetic rat models for childhood absence epilepsy have become instrumental in developing theories on the origin of absence epilepsy, the evaluation of new and experimental treatments, as well as in developing new methods for automatic seizure detection, prediction, and/or interference of seizures. METHOD Various methods for automated off and on-line analyses of ECoG in rodent models are reviewed, as well as data on how to interfere with the spike-wave discharges by different types of invasive and non-invasive electrical, magnetic, and optical brain stimulation. Also a new method for seizure prediction is proposed. RESULTS Many selective and specific methods for off- and on-line spike-wave discharge detection seem excellent, with possibilities to overcome the issue of individual differences. Moreover, electrical deep brain stimulation is rather effective in interrupting ongoing spike-wave discharges with low stimulation intensity. A network based method is proposed for absence seizures prediction with a high sensitivity but a low selectivity. Solutions that prevent false alarms, integrated in a closed loop brain stimulation system open the ways for experimental seizure control. CONCLUSIONS The presence of preictal cursor activity detected with state of the art time frequency and network analyses shows that spike-wave discharges are not caused by sudden and abrupt transitions but that there are detectable dynamic events. Their changes in time-space-frequency characteristics might yield new options for seizure prediction and seizure control.
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Affiliation(s)
- Gilles van Luijtelaar
- Donders Centre for Cognition, Donders Institute for Brain Cognition and Behaviour, Radboud University, Nijmegen, The Netherlands.
| | - Annika Lüttjohann
- Donders Centre for Cognition, Donders Institute for Brain Cognition and Behaviour, Radboud University, Nijmegen, The Netherlands; Institute of Physiology I, Westfälische Wilhelms University Münster, Münster, Germany
| | - Vladimir V Makarov
- REC "Nonlinear Dynamics of Complex Systems", Saratov State Technical University, Politechnicheskaja 77, Saratov, 410028, Russia; Faculty of Nonlinear Processes, Saratov State University, Astrakhanskaya 83, Saratov, 410012, Russia
| | - Vladimir A Maksimenko
- REC "Nonlinear Dynamics of Complex Systems", Saratov State Technical University, Politechnicheskaja 77, Saratov, 410028, Russia; Faculty of Nonlinear Processes, Saratov State University, Astrakhanskaya 83, Saratov, 410012, Russia
| | - Alexei A Koronovskii
- REC "Nonlinear Dynamics of Complex Systems", Saratov State Technical University, Politechnicheskaja 77, Saratov, 410028, Russia; Faculty of Nonlinear Processes, Saratov State University, Astrakhanskaya 83, Saratov, 410012, Russia
| | - Alexander E Hramov
- REC "Nonlinear Dynamics of Complex Systems", Saratov State Technical University, Politechnicheskaja 77, Saratov, 410028, Russia; Faculty of Nonlinear Processes, Saratov State University, Astrakhanskaya 83, Saratov, 410012, Russia
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Tsanas A, Clifford GD. Stage-independent, single lead EEG sleep spindle detection using the continuous wavelet transform and local weighted smoothing. Front Hum Neurosci 2015; 9:181. [PMID: 25926784 PMCID: PMC4396195 DOI: 10.3389/fnhum.2015.00181] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2014] [Accepted: 03/17/2015] [Indexed: 12/05/2022] Open
Abstract
Sleep spindles are critical in characterizing sleep and have been associated with cognitive function and pathophysiological assessment. Typically, their detection relies on the subjective and time-consuming visual examination of electroencephalogram (EEG) signal(s) by experts, and has led to large inter-rater variability as a result of poor definition of sleep spindle characteristics. Hitherto, many algorithmic spindle detectors inherently make signal stationarity assumptions (e.g., Fourier transform-based approaches) which are inappropriate for EEG signals, and frequently rely on additional information which may not be readily available in many practical settings (e.g., more than one EEG channels, or prior hypnogram assessment). This study proposes a novel signal processing methodology relying solely on a single EEG channel, and provides objective, accurate means toward probabilistically assessing the presence of sleep spindles in EEG signals. We use the intuitively appealing continuous wavelet transform (CWT) with a Morlet basis function, identifying regions of interest where the power of the CWT coefficients corresponding to the frequencies of spindles (11-16 Hz) is large. The potential for assessing the signal segment as a spindle is refined using local weighted smoothing techniques. We evaluate our findings on two databases: the MASS database comprising 19 healthy controls and the DREAMS sleep spindle database comprising eight participants diagnosed with various sleep pathologies. We demonstrate that we can replicate the experts' sleep spindles assessment accurately in both databases (MASS database: sensitivity: 84%, specificity: 90%, false discovery rate 83%, DREAMS database: sensitivity: 76%, specificity: 92%, false discovery rate: 67%), outperforming six competing automatic sleep spindle detection algorithms in terms of correctly replicating the experts' assessment of detected spindles.
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Affiliation(s)
- Athanasios Tsanas
- Department of Engineering Science, Institute of Biomedical Engineering, University of OxfordOxford, UK
- Wolfson Centre for Mathematical Biology, Mathematical Institute, University of OxfordOxford, UK
- Nuffield Department of Medicine, Sleep and Circadian Neuroscience Institute, University of OxfordUK
| | - Gari D. Clifford
- Nuffield Department of Medicine, Sleep and Circadian Neuroscience Institute, University of OxfordUK
- Department of Biomedical Informatics, Emory UniversityAtlanta, GA, USA
- Department of Biomedical Engineering, Georgia Institute of TechnologyAtlanta, GA, USA
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Kouchaki S, Sanei S, Arbon EL, Dijk DJ. Tensor Based Singular Spectrum Analysis for Automatic Scoring of Sleep EEG. IEEE Trans Neural Syst Rehabil Eng 2015; 23:1-9. [DOI: 10.1109/tnsre.2014.2329557] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Richard CD, Tanenbaum A, Audit B, Arneodo A, Khalil A, Frankel WN. SWDreader: a wavelet-based algorithm using spectral phase to characterize spike-wave morphological variation in genetic models of absence epilepsy. J Neurosci Methods 2014; 242:127-40. [PMID: 25549550 DOI: 10.1016/j.jneumeth.2014.12.016] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2014] [Revised: 12/17/2014] [Accepted: 12/19/2014] [Indexed: 12/12/2022]
Abstract
BACKGROUND Spike-wave discharges (SWD) found in neuroelectrical recordings are pathognomonic to absence epilepsy. The characteristic spike-wave morphology of the spike-wave complex (SWC) constituents of SWDs can be mathematically described by a subset of possible spectral power and phase values. Morlet wavelet transform (MWT) generates time-frequency representations well-suited to identifying this SWC-associated subset. NEW METHOD MWT decompositions of SWDs reveal spectral power concentrated at harmonic frequencies. The phase relationships underlying SWC morphology were identified by calculating the differences between phase values at SWD fundamental frequency from the 2nd, 3rd, and 4th harmonics, then using the three phase differences as coordinates to generate a density distribution in a {360°×360°×360°} phase difference space. Strain-specific density distributions were generated from SWDs of mice carrying the Gria4, Gabrg2, or Scn8a mutations to determine whether SWC morphological variants reliably mapped to the same regions of the distribution, and if distribution values could be used to detect SWD. COMPARISON WITH EXISTING METHODS To the best of our knowledge, this algorithm is the first to employ spectral phase to quantify SWC morphology, making it possible to computationally distinguish SWC morphological subtypes and detect SWDs. RESULTS/CONCLUSIONS Proof-of-concept testing of the SWDfinder algorithm shows: (1) a major pattern of variation in SWC morphology maps to one axis of the phase difference distribution, (2) variability between the strain-specific distributions reflects differences in the proportions of SWC subtypes generated during SWD, and (3) regularities in the spectral power and phase profiles of SWCs can be used to detect waveforms possessing SWC-like morphology.
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Affiliation(s)
- C D Richard
- The Jackson Laboratory, Bar Harbor, ME 04609 USA; Graduate School for Biomedical Sciences and Engineering, University of Maine, Orono, ME 04469 USA.
| | - A Tanenbaum
- Department of Neurology, School of Medicine, Washington University, St. Louis, MO 63130 USA; CompuMAINE Lab, Department of Mathematics, University of Maine, Orono, ME 04469 USA
| | - B Audit
- Laboratoire de Physique, CNRS UMR 5672, Université de Lyon, École Normale Supérieure de Lyon, F-69007 Lyon, France
| | - A Arneodo
- Laboratoire de Physique, CNRS UMR 5672, Université de Lyon, École Normale Supérieure de Lyon, F-69007 Lyon, France
| | - A Khalil
- The Jackson Laboratory, Bar Harbor, ME 04609 USA; Graduate School for Biomedical Sciences and Engineering, University of Maine, Orono, ME 04469 USA; CompuMAINE Lab, Department of Mathematics, University of Maine, Orono, ME 04469 USA
| | - W N Frankel
- The Jackson Laboratory, Bar Harbor, ME 04609 USA; Graduate School for Biomedical Sciences and Engineering, University of Maine, Orono, ME 04469 USA; Tufts University School of Medicine, Sackler School, Boston, MA 02111 USA
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Guo Y, Tan J. Fourier transform of delayed fluorescence as an indicator of herbicide concentration. J Theor Biol 2014; 363:271-6. [PMID: 25152216 DOI: 10.1016/j.jtbi.2014.08.023] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2014] [Revised: 08/11/2014] [Accepted: 08/13/2014] [Indexed: 11/19/2022]
Abstract
It is well known that delayed fluorescence (DF) from Photosystem II (PSII) of plant leaves can be potentially used to sense herbicide pollution and evaluate the effect of herbicides on plant leaves. The research of using DF as a measure of herbicides in the literature was mainly conducted in time domain and qualitative correlation was often obtained. Fourier transform is often used to analyze signals. Viewing DF signal in frequency domain through Fourier transform may allow separation of signal components and provide a quantitative method for sensing herbicides. However, there is a lack of an attempt to use Fourier transform of DF as an indicator of herbicide. In this work, the relationship between the Fourier transform of DF and herbicide concentration was theoretically modelled and analyzed, which immediately yielded a quantitative method to measure herbicide concentration in frequency domain. Experiments were performed to validate the developed method.
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Affiliation(s)
- Ya Guo
- Department of Bioengineering, University of Missouri, Columbia, MO 65211, USA.
| | - Jinglu Tan
- Department of Bioengineering, University of Missouri, Columbia, MO 65211, USA
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On the potential usefulness of Fourier spectra of delayed fluorescence from plants. SENSORS 2014; 14:23620-9. [PMID: 25502123 PMCID: PMC4299079 DOI: 10.3390/s141223620] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/25/2014] [Revised: 11/27/2014] [Accepted: 12/02/2014] [Indexed: 11/17/2022]
Abstract
Delayed fluorescence (DF) from photosystem II (PSII) of plants can be potentially used as a biosensor for the detection of plant physiological status and environmental changes. It has been analyzed mainly in the time domain. Frequency-domain analysis through Fourier transform allows viewing a signal from another angle, but the usefulness of DF spectra has not been well studied. In this work, experiments were conducted to show the differences and similarities in DF spectra of different plants with short pulse excitation. The DF spectra show low-pass characteristics with first-order attenuation of high frequencies. The results also show that the low-frequency components differ while the high-frequency components are similar. These may imply the potential usefulness of Fourier spectra of DF to analyze photoelectron transport in plants and classify samples.
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Age-Dependent Increase of Absence Seizures and Intrinsic Frequency Dynamics of Sleep Spindles in Rats. NEUROSCIENCE JOURNAL 2014; 2014:370764. [PMID: 26317108 PMCID: PMC4437255 DOI: 10.1155/2014/370764] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2014] [Revised: 06/01/2014] [Accepted: 06/02/2014] [Indexed: 11/18/2022]
Abstract
The risk of neurological diseases increases with age. In WAG/Rij rat model of absence epilepsy, the incidence of epileptic spike-wave discharges is known to be elevated with age. Considering close relationship between epileptic spike-wave discharges and physiologic sleep spindles, it was assumed that age-dependent increase of epileptic activity may affect time-frequency characteristics of sleep spindles. In order to examine this hypothesis, electroencephalograms (EEG) were recorded in WAG/Rij rats successively at the ages 5, 7, and 9 months. Spike-wave discharges and sleep spindles were detected in frontal EEG channel. Sleep spindles were identified automatically using wavelet-based algorithm. Instantaneous (localized in time) frequency of sleep spindles was determined using continuous wavelet transform of EEG signal, and intraspindle frequency dynamics were further examined. It was found that in 5-months-old rats epileptic activity has not fully developed (preclinical stage) and sleep spindles demonstrated an increase of instantaneous frequency from beginning to the end. At the age of 7 and 9 months, when animals developed matured and longer epileptic discharges (symptomatic stage), their sleep spindles did not display changes of intrinsic frequency. The present data suggest that age-dependent increase of epileptic activity in WAG/Rij rats affects intrinsic dynamics of sleep spindle frequency.
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Sitnikova EY, Grubov VV, Khramov AE, Koronovskii AA. Developmental Changes in the Frequency-Time Structure of Sleep Spindles on the EEG in Rats with a Genetic Predisposition to Absence Epilepsy (WAG/Rij). ACTA ACUST UNITED AC 2014. [DOI: 10.1007/s11055-014-9910-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Sleep-spindle detection: crowdsourcing and evaluating performance of experts, non-experts and automated methods. Nat Methods 2014; 11:385-92. [PMID: 24562424 PMCID: PMC3972193 DOI: 10.1038/nmeth.2855] [Citation(s) in RCA: 224] [Impact Index Per Article: 22.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2013] [Accepted: 01/31/2014] [Indexed: 11/19/2022]
Abstract
Sleep spindles are discrete, intermittent patterns of brain activity that arise as a result of interactions of several circuits in the brain. Increasingly, these oscillations are of biological and clinical interest because of their role in development, learning, and neurological disorders. We used an internet interface to ‘crowdsource’ spindle identification from human experts and non-experts, and compared performance with 6 automated detection algorithms in middle-to-older aged subjects from the general population. We also developed a method for forming group consensus, and refined methods of evaluating the performance of event detectors in physiological data such as polysomnography. Compared to the gold standard, the highest performance was by individual experts and the non-expert group consensus, followed by automated spindle detectors. Crowdsourcing the scoring of sleep data is an efficient method to collect large datasets, even for difficult tasks such as spindle identification. Further refinements to automated sleep spindle algorithms are needed for middle-to-older aged subjects.
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Loss of sleep spindle frequency deceleration in Obstructive Sleep Apnea. Clin Neurophysiol 2014; 125:306-12. [DOI: 10.1016/j.clinph.2013.07.005] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2013] [Revised: 06/30/2013] [Accepted: 07/05/2013] [Indexed: 11/24/2022]
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Sitnikova E, Hramov AE, Grubov V, Koronovsky AA. Time-frequency characteristics and dynamics of sleep spindles in WAG/Rij rats with absence epilepsy. Brain Res 2013; 1543:290-9. [PMID: 24231550 DOI: 10.1016/j.brainres.2013.11.001] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2013] [Revised: 10/25/2013] [Accepted: 11/03/2013] [Indexed: 11/29/2022]
Abstract
In rat models of absence epilepsy, epileptic spike-wave discharges appeared in EEG spontaneously, and the incidence of epileptic activity increases with age. Spike-wave discharges and sleep spindles are known to share common thalamo-cortical mechanism, suggesting that absence seizures might affect some intrinsic properties of sleep spindles. This paper examines time-frequency EEG characteristics of anterior sleep spindles in non-epileptic Wistar and epileptic WAG/Rij rats at the age of 7 and 9 months. Considering non-stationary features of sleep spindles, EEG analysis was performed using Morlet-based continuous wavelet transform. It was found, first, that the average frequency of sleep spindles in non-epileptic Wistar rats was higher than in WAG/Rij (13.2 vs 11.2 Hz). Second, the instantaneous frequency ascended during a spindle event in Wistar rats, but it was constant in WAG/Rij. Third, in WAG/Rij rats, the number and duration of epileptic discharges increased in a period between 7 and 9 months of age, but duration and mean value of intra-spindle frequency did not change. In general, age-dependent aggravation of absence seizures in WAG/Rij rats did not affect EEG properties of sleep spindles; it was suggested that pro-epileptic changes in thalamo-cortical network in WAG/Rij rats might prevent dynamic changes of sleep spindles that were detected in Wistar.
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Affiliation(s)
- Evgenia Sitnikova
- Institute of the Higher Nervous Activity and Neurophysiology of Russian Academy of Sciences, Butlerova str., 5A, Moscow 117485, Russia.
| | - Alexander E Hramov
- Faculty of Nonlinear Processes, Saratov State University, Saratov, Astrakhanskaya str., 83, Saratov 410012, Russia; Research-Educational Center 'Nonlinear Dynamics of Complex Systems', Saratov State Technical University, Saratov, Polytechnicheskaya str., 77, Saratov 410054, Russia.
| | - Vadim Grubov
- Faculty of Nonlinear Processes, Saratov State University, Saratov, Astrakhanskaya str., 83, Saratov 410012, Russia; Research-Educational Center 'Nonlinear Dynamics of Complex Systems', Saratov State Technical University, Saratov, Polytechnicheskaya str., 77, Saratov 410054, Russia.
| | - Alexey A Koronovsky
- Faculty of Nonlinear Processes, Saratov State University, Saratov, Astrakhanskaya str., 83, Saratov 410012, Russia; Research-Educational Center 'Nonlinear Dynamics of Complex Systems', Saratov State Technical University, Saratov, Polytechnicheskaya str., 77, Saratov 410054, Russia.
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Local properties of vigilance states: EMD analysis of EEG signals during sleep-waking states of freely moving rats. PLoS One 2013; 8:e78174. [PMID: 24167606 PMCID: PMC3805530 DOI: 10.1371/journal.pone.0078174] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2013] [Accepted: 09/17/2013] [Indexed: 11/19/2022] Open
Abstract
Understanding the inherent dynamics of the EEG associated to sleep-waking can provide insights into its basic neural regulation. By characterizing the local properties of the EEG using power spectrum, empirical mode decomposition (EMD) and Hilbert-spectral analysis, we can examine the dynamics over a range of time-scales. We analyzed rat EEG during wake, NREMS and REMS using these methods. The average instantaneous phase, power spectral density (PSD) of intrinsic mode functions (IMFs) and the energy content in various frequency bands show characteristic changes in each of the vigilance states. The 2nd and 7th IMFs show changes in PSD for wake and REMS, suggesting that those modes may carry wake- and REMS-associated cognitive, conscious and behavior-specific information of an individual even though the EEG may appear similar. The energy content in θ2 (6Hz-9Hz) band of the 1st IMF for REMS is larger than that of wake. The decrease in the phase function of IMFs from wake to REMS to NREMS indicates decrease of the mean frequency in these states, respectively. The rate of information processing in waking state is more in the time scale described by the first three IMFs than in REMS state. However, for IMF5-IMF7, the rate is more for REMS than that for wake. We obtained Hilbert-Huang spectral entropy, which is a suitable measure of information processing in each of these state-specific EEG. It is possible to evaluate the complex dynamics of the EEG in each of the vigilance states by applying measures based on EMD and Hilbert-transform. Our results suggest that the EMD based nonlinear measures of the EEG can provide useful estimates of the information possessed by various oscillations associated with the vigilance states. Further, the EMD-based spectral measures may have implications in understanding anatamo-physiological correlates of sleep-waking behavior and clinical diagnosis of sleep-pathology.
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Schönwald SV, Carvalho DZ, de Santa-Helena EL, Lemke N, Gerhardt GJL. Topography-specific spindle frequency changes in obstructive sleep apnea. BMC Neurosci 2012; 13:89. [PMID: 22985414 PMCID: PMC3496607 DOI: 10.1186/1471-2202-13-89] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2012] [Accepted: 06/28/2012] [Indexed: 11/25/2022] Open
Abstract
Background Sleep spindles, as detected on scalp electroencephalography (EEG), are considered to be markers of thalamo-cortical network integrity. Since obstructive sleep apnea (OSA) is a known cause of brain dysfunction, the aim of this study was to investigate sleep spindle frequency distribution in OSA. Seven non-OSA subjects and 21 patients with OSA (11 mild and 10 moderate) were studied. A matching pursuit procedure was used for automatic detection of fast (≥13Hz) and slow (<13Hz) spindles obtained from 30min samples of NREM sleep stage 2 taken from initial, middle and final night thirds (sections I, II and III) of frontal, central and parietal scalp regions. Results Compared to non-OSA subjects, Moderate OSA patients had higher central and parietal slow spindle percentage (SSP) in all night sections studied, and higher frontal SSP in sections II and III. As the night progressed, there was a reduction in central and parietal SSP, while frontal SSP remained high. Frontal slow spindle percentage in night section III predicted OSA with good accuracy, with OSA likelihood increased by 12.1%for every SSP unit increase (OR 1.121, 95% CI 1.013 - 1.239, p=0.027). Conclusions These results are consistent with diffuse, predominantly frontal thalamo-cortical dysfunction during sleep in OSA, as more posterior brain regions appear to maintain some physiological spindle frequency modulation across the night. Displaying changes in an opposite direction to what is expected from the aging process itself, spindle frequency appears to be informative in OSA even with small sample sizes, and to represent a sensitive electrophysiological marker of brain dysfunction in OSA.
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Affiliation(s)
- Suzana V Schönwald
- Sleep Laboratory, Division of Pulmonary Medicine, Hospital de Clínicas de Porto Alegre, Rua Ramiro Barcelos 2350/sala 2050, Porto Alegre, RS, 90035-003, Brazil
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Lüttjohann A, van Luijtelaar G. The dynamics of cortico-thalamo-cortical interactions at the transition from pre-ictal to ictal LFPs in absence epilepsy. Neurobiol Dis 2012; 47:49-60. [PMID: 22465080 DOI: 10.1016/j.nbd.2012.03.023] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2011] [Revised: 03/12/2012] [Accepted: 03/14/2012] [Indexed: 11/16/2022] Open
Abstract
PURPOSE Generalized spike and wave discharges (SWD) are generated within the cortico-thalamo-cortical system. However the exact interactions between cortex and different thalamic nuclei needed for the generation and maintenance of SWD are still to be elucidated. This study aims to shed more light on these interactions via multisite cortical and thalamic local-field-potential recordings. METHODS WAG/Rij rats were equipped with multiple electrodes targeting layers 4 to 6 of the somatosensory-cortex, rostral and caudal RTN, VPM, anterior (ATN)- and posterior (Po) thalamic nucleus. The maximal-association-strength between signals was calculated for pre-ictal→ictal transition periods and in control periods using non-linear-association-analysis. Dynamics of changes in coupling-direction and time-delays between channels were analyzed. RESULTS Earliest and strongest increases in coupling-strength were seen between cortical layers 5/6 and Po. Other thalamic nuclei became later involved in SWD activity. During the first 500ms of SWDs the cortex guided most thalamic nuclei while cortex and Po kept a bidirectional crosstalk. Most thalamic nuclei started to guide the Po until the end of the SWD. While the rostral RTN showed increased coupling with Po, the caudal RTN decoupled. Instead, it directed its activity to the rostral RTN. CONCLUSIONS Next to the focal cortical instigator zone of SWDs, the Po seems crucial for their occurrence. This nucleus shows early increases in coupling and is the only nucleus which keeps a bidirectional crosstalk to the cortex within the first 500ms of SWDs. Other thalamic nuclei seem to have only a function in SWD maintenance. Rostral and caudal-RTN have opposite roles in SWD occurrence.
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Affiliation(s)
- Annika Lüttjohann
- Donders Institute for Brain, Cognition and Behaviour, Donders Centre for Cognition, Radboud University Nijmegen, Nijmegen, The Netherlands.
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Pavlov A, Hramov A, Koronovskii A, Sitnikova EY, Makarov VA, Ovchinnikov AA. Wavelet analysis in neurodynamics. ACTA ACUST UNITED AC 2012. [DOI: 10.3367/ufnr.0182.201209a.0905] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
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