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Shin H, Ogando MB, Abdeladim L, Durand S, Belski H, Cabasco H, Loefler H, Bawany A, Hardcastle B, Wilkes J, Nguyen K, Suarez L, Johnson T, Han W, Ouellette B, Grasso C, Swapp J, Ha V, Young A, Caldejon S, Williford A, Groblewski P, Olsen S, Kiselycznyk C, Lecoq J, Adesnik H. Recurrent pattern completion drives the neocortical representation of sensory inference. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.06.05.543698. [PMID: 37333175 PMCID: PMC10274729 DOI: 10.1101/2023.06.05.543698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/20/2023]
Abstract
When sensory information is incomplete or ambiguous, the brain relies on prior expectations to infer perceptual objects. Despite the centrality of this process to perception, the neural mechanism of sensory inference is not known. Illusory contours (ICs) are key tools to study sensory inference because they contain edges or objects that are implied only by their spatial context. Using cellular resolution, mesoscale two-photon calcium imaging and multi-Neuropixels recordings in the mouse visual cortex, we identified a sparse subset of neurons in the primary visual cortex (V1) and higher visual areas that respond emergently to ICs. We found that these highly selective 'IC-encoders' mediate the neural representation of IC inference. Strikingly, selective activation of these neurons using two-photon holographic optogenetics was sufficient to recreate IC representation in the rest of the V1 network, in the absence of any visual stimulus. This outlines a model in which primary sensory cortex facilitates sensory inference by selectively strengthening input patterns that match prior expectations through local, recurrent circuitry. Our data thus suggest a clear computational purpose for recurrence in the generation of holistic percepts under sensory ambiguity. More generally, selective reinforcement of top-down predictions by pattern-completing recurrent circuits in lower sensory cortices may constitute a key step in sensory inference.
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Affiliation(s)
- Hyeyoung Shin
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA
- Present Address: School of Biological Sciences, Seoul National University, Seoul, Republic of Korea
| | - Mora B Ogando
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA
| | - Lamiae Abdeladim
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA
| | | | - Hannah Belski
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | | | - Henry Loefler
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | - Ahad Bawany
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | | | - Josh Wilkes
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | | | - Lucas Suarez
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | - Tye Johnson
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | - Warren Han
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | - Ben Ouellette
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | - Conor Grasso
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | - Jackie Swapp
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | - Vivian Ha
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | - Ahrial Young
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | | | - Ali Williford
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | | | - Shawn Olsen
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | | | - Jerome Lecoq
- Allen Institute, Mindscope Program, Seattle, WA, USA
| | - Hillel Adesnik
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA
- The Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
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2
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Christensen AJ, Ott T, Kepecs A. Cognition and the single neuron: How cell types construct the dynamic computations of frontal cortex. Curr Opin Neurobiol 2022; 77:102630. [PMID: 36209695 PMCID: PMC10375540 DOI: 10.1016/j.conb.2022.102630] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 08/18/2022] [Accepted: 08/23/2022] [Indexed: 01/10/2023]
Abstract
Frontal cortex is thought to underlie many advanced cognitive capacities, from self-control to long term planning. Reflecting these diverse demands, frontal neural activity is notoriously idiosyncratic, with tuning properties that are correlated with endless numbers of behavioral and task features. This menagerie of tuning has made it difficult to extract organizing principles that govern frontal neural activity. Here, we contrast two successful yet seemingly incompatible approaches that have begun to address this challenge. Inspired by the indecipherability of single-neuron tuning, the first approach casts frontal computations as dynamical trajectories traversed by arbitrary mixtures of neurons. The second approach, by contrast, attempts to explain the functional diversity of frontal activity with the biological diversity of cortical cell-types. Motivated by the recent discovery of functional clusters in frontal neurons, we propose a consilience between these population and cell-type-specific approaches to neural computations, advancing the conjecture that evolutionarily inherited cell-type constraints create the scaffold within which frontal population dynamics must operate.
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Affiliation(s)
- Amelia J Christensen
- Department of Neuroscience and Department of Psychiatry, Washington University in St. Louis, St. Louis, MO 63110, USA.
| | - Torben Ott
- Department of Neuroscience and Department of Psychiatry, Washington University in St. Louis, St. Louis, MO 63110, USA; Bernstein Center for Computational Neuroscience Berlin, Humboldt University of Berlin, Berlin, Germany.
| | - Adam Kepecs
- Department of Neuroscience and Department of Psychiatry, Washington University in St. Louis, St. Louis, MO 63110, USA.
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3
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Adámek P, Langová V, Horáček J. Early-stage visual perception impairment in schizophrenia, bottom-up and back again. SCHIZOPHRENIA (HEIDELBERG, GERMANY) 2022; 8:27. [PMID: 35314712 PMCID: PMC8938488 DOI: 10.1038/s41537-022-00237-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 02/17/2022] [Indexed: 01/01/2023]
Abstract
Visual perception is one of the basic tools for exploring the world. However, in schizophrenia, this modality is disrupted. So far, there has been no clear answer as to whether the disruption occurs primarily within the brain or in the precortical areas of visual perception (the retina, visual pathways, and lateral geniculate nucleus [LGN]). A web-based comprehensive search of peer-reviewed journals was conducted based on various keyword combinations including schizophrenia, saliency, visual cognition, visual pathways, retina, and LGN. Articles were chosen with respect to topic relevance. Searched databases included Google Scholar, PubMed, and Web of Science. This review describes the precortical circuit and the key changes in biochemistry and pathophysiology that affect the creation and characteristics of the retinal signal as well as its subsequent modulation and processing in other parts of this circuit. Changes in the characteristics of the signal and the misinterpretation of visual stimuli associated with them may, as a result, contribute to the development of schizophrenic disease.
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Affiliation(s)
- Petr Adámek
- Third Faculty of Medicine, Charles University, Prague, Czech Republic. .,Center for Advanced Studies of Brain and Consciousness, National Institute of Mental Health, Klecany, Czech Republic.
| | - Veronika Langová
- Third Faculty of Medicine, Charles University, Prague, Czech Republic.,Center for Advanced Studies of Brain and Consciousness, National Institute of Mental Health, Klecany, Czech Republic
| | - Jiří Horáček
- Third Faculty of Medicine, Charles University, Prague, Czech Republic.,Center for Advanced Studies of Brain and Consciousness, National Institute of Mental Health, Klecany, Czech Republic
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4
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Wu H, Zheng N, Chen B. Feature-specific denoising of neural activity for natural image identification. IEEE Trans Cogn Dev Syst 2021. [DOI: 10.1109/tcds.2021.3062067] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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5
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Ayzenberg V, Chen Y, Yousif SR, Lourenco SF. Skeletal representations of shape in human vision: Evidence for a pruned medial axis model. J Vis 2019; 19:6. [PMID: 31173631 PMCID: PMC6894409 DOI: 10.1167/19.6.6] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Abstract
A representation of shape that is low dimensional and stable across minor disruptions is critical for object recognition. Computer vision research suggests that such a representation can be supported by the medial axis-a computational model for extracting a shape's internal skeleton. However, few studies have shown evidence of medial axis processing in humans, and even fewer have examined how the medial axis is extracted in the presence of disruptive contours. Here, we tested whether human skeletal representations of shape reflect the medial axis transform (MAT), a computation sensitive to all available contours, or a pruned medial axis, which ignores contours that may be considered "noise." Across three experiments, participants (N = 2062) were shown complete, perturbed, or illusory two-dimensional shapes on a tablet computer and were asked to tap the shapes anywhere once. When directly compared with another viable model of shape perception (based on principal axes), participants' collective responses were better fit by the medial axis, and a direct test of boundary avoidance suggested that this result was not likely because of a task-specific cognitive strategy (Experiment 1). Moreover, participants' responses reflected a pruned computation in shapes with small or large internal or external perturbations (Experiment 2) and under conditions of illusory contours (Experiment 3). These findings extend previous work by suggesting that humans extract a relatively stable medial axis of shapes. A relatively stable skeletal representation, reflected by a pruned model, may be well equipped to support real-world shape perception and object recognition.
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Affiliation(s)
| | - Yunxiao Chen
- The London School of Economics and Political Science, London, UK
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Top-Down Feedback Controls the Cortical Representation of Illusory Contours in Mouse Primary Visual Cortex. J Neurosci 2019; 40:648-660. [PMID: 31792152 DOI: 10.1523/jneurosci.1998-19.2019] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Revised: 10/29/2019] [Accepted: 11/15/2019] [Indexed: 01/01/2023] Open
Abstract
Visual systems have evolved to recognize and extract features from complex scenes using limited sensory information. Contour perception is essential to this process and can occur despite breaks in the continuity of neighboring features. Such robustness of the animal visual system to degraded or occluded shapes may also give rise to an interesting phenomenon of optical illusions. These illusions provide a great opportunity to decipher neural computations underlying contour integration and object detection. Kanizsa illusory contours have been shown to evoke responses in the early visual cortex despite the lack of direct receptive field activation. Recurrent processing between visual areas has been proposed to be involved in this process. However, it is unclear whether higher visual areas directly contribute to the generation of illusory responses in the early visual cortex. Using behavior, in vivo electrophysiology, and optogenetics, we first show that the primary visual cortex (V1) of male mice responds to Kanizsa illusory contours. Responses to Kanizsa illusions emerge later than the responses to the contrast-defined real contours in V1. Second, we demonstrate that illusory responses are orientation-selective. Finally, we show that top-down feedback controls the neural correlates of illusory contour perception in V1. Our results suggest that higher-order visual areas may fill in the missing information in the early visual cortex necessary for illusory contour perception.SIGNIFICANCE STATEMENT Perception of the Kanizsa illusory contours is impaired in neurodevelopmental disorders such as schizophrenia, autism, and Williams syndrome. However, the mechanism of the illusory contour perception is poorly understood. Here we describe the behavioral and neural correlates of Kanizsa illusory contours perception in mice, a genetically tractable model system. We show that top-down feedback controls the neural responses to Kanizsa illusion in V1. To our knowledge, this is the first description of the neural correlates of the Kanizsa illusion in mice and the first causal demonstration of their regulation by top-down feedback.
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Tang Q, Sang N, Liu H. Learning Nonclassical Receptive Field Modulation for Contour Detection. IEEE TRANSACTIONS ON IMAGE PROCESSING : A PUBLICATION OF THE IEEE SIGNAL PROCESSING SOCIETY 2019; 29:1192-1203. [PMID: 31536000 DOI: 10.1109/tip.2019.2940690] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
This work develops a biologically inspired neural network for contour detection in natural images by combining the nonclassical receptive field modulation mechanism with a deep learning framework. The input image is first convolved with the local feature detectors to produce the classical receptive field responses, and then a corresponding modulatory kernel is constructed for each feature map to model the nonclassical receptive field modulation behaviors. The modulatory effects can activate a larger cortical area and thus allow cortical neurons to integrate a broader range of visual information to recognize complex cases. Additionally, to characterize spatial structures at various scales, a multiresolution technique is used to represent visual field information from fine to coarse. Different scale responses are combined to estimate the contour probability. Our method achieves state-of-the-art results among all biologically inspired contour detection models. This study provides a method for improving visual modeling of contour detection and inspires new ideas for integrating more brain cognitive mechanisms into deep neural networks.
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Croydon A, Karaminis T, Neil L, Burr D, Pellicano E. The light-from-above prior is intact in autistic children. J Exp Child Psychol 2017; 161:113-125. [PMID: 28521245 PMCID: PMC5472805 DOI: 10.1016/j.jecp.2017.04.005] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2016] [Revised: 04/10/2017] [Accepted: 04/13/2017] [Indexed: 11/24/2022]
Abstract
Sensory information is inherently ambiguous. The brain disambiguates this information by anticipating or predicting the sensory environment based on prior knowledge. Pellicano and Burr (2012) proposed that this process may be atypical in autism and that internal assumptions, or "priors," may be underweighted or less used than in typical individuals. A robust internal assumption used by adults is the "light-from-above" prior, a bias to interpret ambiguous shading patterns as if formed by a light source located above (and slightly to the left) of the scene. We investigated whether autistic children (n=18) use this prior to the same degree as typical children of similar age and intellectual ability (n=18). Children were asked to judge the shape (concave or convex) of a shaded hexagon stimulus presented in 24 rotations. We estimated the relation between the proportion of convex judgments and stimulus orientation for each child and calculated the light source location most consistent with those judgments. Children behaved similarly to adults in this task, preferring to assume that the light source was from above left, when other interpretations were compatible with the shading evidence. Autistic and typical children used prior assumptions to the same extent to make sense of shading patterns. Future research should examine whether this prior is as adaptable (i.e., modifiable with training) in autistic children as it is in typical adults.
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Affiliation(s)
- Abigail Croydon
- Centre for Research in Autism and Education (CRAE), Department of Psychology and Human Development, UCL Institute of Education, University College London, London WC1H 0NU, UK.
| | - Themelis Karaminis
- Centre for Research in Autism and Education (CRAE), Department of Psychology and Human Development, UCL Institute of Education, University College London, London WC1H 0NU, UK; Centre for Language Studies, Radboud University, Erasmusplein 1, 6525 HT Nijmegen, The Netherlands.
| | - Louise Neil
- Centre for Research in Autism and Education (CRAE), Department of Psychology and Human Development, UCL Institute of Education, University College London, London WC1H 0NU, UK
| | - David Burr
- Institute of Neuroscience, National Research Council (CNR), 56100 Pisa, Italy; School of Psychology, University of Western Australia, Crawley, Perth, Western Australia 6009, Australia
| | - Elizabeth Pellicano
- Centre for Research in Autism and Education (CRAE), Department of Psychology and Human Development, UCL Institute of Education, University College London, London WC1H 0NU, UK; School of Psychology, University of Western Australia, Crawley, Perth, Western Australia 6009, Australia
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9
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Sang Q, Cai B, Chen H. Contour detection improved by context-adaptive surround suppression. PLoS One 2017; 12:e0181792. [PMID: 28759589 PMCID: PMC5536361 DOI: 10.1371/journal.pone.0181792] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2017] [Accepted: 07/09/2017] [Indexed: 11/19/2022] Open
Abstract
Recently, many image processing applications have taken advantage of a psychophysical and neurophysiological mechanism, called “surround suppression” to extract object contour from a natural scene. However, these traditional methods often adopt a single suppression model and a fixed input parameter called “inhibition level”, which needs to be manually specified. To overcome these drawbacks, we propose a novel model, called “context-adaptive surround suppression”, which can automatically control the effect of surround suppression according to image local contextual features measured by a surface estimator based on a local linear kernel. Moreover, a dynamic suppression method and its stopping mechanism are introduced to avoid manual intervention. The proposed algorithm is demonstrated and validated by a broad range of experimental results.
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Affiliation(s)
- Qiang Sang
- College of Information Science & Technology, Chengdu University of Technology, Chengdu, Sichuan, P.R.China
| | - Biao Cai
- Department of Digital Media Technology, Chengdu University of Technology, Chengdu, Sichuan, China
- * E-mail:
| | - Hao Chen
- Department of Computer Science and Technology, Southwest University for Nationalities, Chengdu, Sichuan, China
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10
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Roland PE. Space-Time Dynamics of Membrane Currents Evolve to Shape Excitation, Spiking, and Inhibition in the Cortex at Small and Large Scales. Neuron 2017; 94:934-942. [PMID: 28595049 DOI: 10.1016/j.neuron.2017.04.038] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2016] [Revised: 03/29/2017] [Accepted: 04/27/2017] [Indexed: 12/14/2022]
Abstract
In the cerebral cortex, membrane currents, i.e., action potentials and other membrane currents, express many forms of space-time dynamics. In the spontaneous asynchronous irregular state, their space-time dynamics are local non-propagating fluctuations and sparse spiking appearing at unpredictable positions. After transition to active spiking states, larger structured zones with active spiking neurons appear, propagating through the cortical network, driving it into various forms of widespread excitation, and engaging the network from microscopic scales to whole cortical areas. At each engaged cortical site, the amount of excitation in the network, after a delay, becomes matched by an equal amount of space-time fine-tuned inhibition that might be instrumental in driving the dynamics toward perception and action.
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Affiliation(s)
- Per E Roland
- Center for Neuroscience, Faculty of Health Sciences, University of Copenhagen, DK 2200N Copenhagen, Denmark.
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11
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Wyatte D, Jilk DJ, O'Reilly RC. Early recurrent feedback facilitates visual object recognition under challenging conditions. Front Psychol 2014; 5:674. [PMID: 25071647 PMCID: PMC4077013 DOI: 10.3389/fpsyg.2014.00674] [Citation(s) in RCA: 54] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2014] [Accepted: 06/10/2014] [Indexed: 11/13/2022] Open
Abstract
Standard models of the visual object recognition pathway hold that a largely feedforward process from the retina through inferotemporal cortex leads to object identification. A subsequent feedback process originating in frontoparietal areas through reciprocal connections to striate cortex provides attentional support to salient or behaviorally-relevant features. Here, we review mounting evidence that feedback signals also originate within extrastriate regions and begin during the initial feedforward process. This feedback process is temporally dissociable from attention and provides important functions such as grouping, associational reinforcement, and filling-in of features. Local feedback signals operating concurrently with feedforward processing are important for object identification in noisy real-world situations, particularly when objects are partially occluded, unclear, or otherwise ambiguous. Altogether, the dissociation of early and late feedback processes presented here expands on current models of object identification, and suggests a dual role for descending feedback projections.
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Affiliation(s)
- Dean Wyatte
- Department of Psychology and Neuroscience, University of Colorado Boulder Boulder, CO, USA
| | | | - Randall C O'Reilly
- Department of Psychology and Neuroscience, University of Colorado Boulder Boulder, CO, USA
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12
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Spratling MW. Image segmentation using a sparse coding model of cortical area V1. IEEE TRANSACTIONS ON IMAGE PROCESSING : A PUBLICATION OF THE IEEE SIGNAL PROCESSING SOCIETY 2013; 22:1631-1643. [PMID: 23269754 DOI: 10.1109/tip.2012.2235850] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Algorithms that encode images using a sparse set of basis functions have previously been shown to explain aspects of the physiology of a primary visual cortex (V1), and have been used for applications, such as image compression, restoration, and classification. Here, a sparse coding algorithm, that has previously been used to account for the response properties of orientation tuned cells in primary visual cortex, is applied to the task of perceptually salient boundary detection. The proposed algorithm is currently limited to using only intensity information at a single scale. However, it is shown to out-perform the current state-of-the-art image segmentation method (Pb) when this method is also restricted to using the same information.
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13
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Dura-Bernal S, Wennekers T, Denham SL. Top-down feedback in an HMAX-like cortical model of object perception based on hierarchical Bayesian networks and belief propagation. PLoS One 2012; 7:e48216. [PMID: 23139765 PMCID: PMC3489785 DOI: 10.1371/journal.pone.0048216] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2012] [Accepted: 09/25/2012] [Indexed: 11/19/2022] Open
Abstract
Hierarchical generative models, such as Bayesian networks, and belief propagation have been shown to provide a theoretical framework that can account for perceptual processes, including feedforward recognition and feedback modulation. The framework explains both psychophysical and physiological experimental data and maps well onto the hierarchical distributed cortical anatomy. However, the complexity required to model cortical processes makes inference, even using approximate methods, very computationally expensive. Thus, existing object perception models based on this approach are typically limited to tree-structured networks with no loops, use small toy examples or fail to account for certain perceptual aspects such as invariance to transformations or feedback reconstruction. In this study we develop a Bayesian network with an architecture similar to that of HMAX, a biologically-inspired hierarchical model of object recognition, and use loopy belief propagation to approximate the model operations (selectivity and invariance). Crucially, the resulting Bayesian network extends the functionality of HMAX by including top-down recursive feedback. Thus, the proposed model not only achieves successful feedforward recognition invariant to noise, occlusions, and changes in position and size, but is also able to reproduce modulatory effects such as illusory contour completion and attention. Our novel and rigorous methodology covers key aspects such as learning using a layerwise greedy algorithm, combining feedback information from multiple parents and reducing the number of operations required. Overall, this work extends an established model of object recognition to include high-level feedback modulation, based on state-of-the-art probabilistic approaches. The methodology employed, consistent with evidence from the visual cortex, can be potentially generalized to build models of hierarchical perceptual organization that include top-down and bottom-up interactions, for example, in other sensory modalities.
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Affiliation(s)
- Salvador Dura-Bernal
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center, Brooklyn, New York, USA.
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14
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Gutiérrez R, Gómez F, Roa-Peña L, Romero E. A supervised visual model for finding regions of interest in basal cell carcinoma images. Diagn Pathol 2011; 6:26. [PMID: 21447178 PMCID: PMC3079595 DOI: 10.1186/1746-1596-6-26] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2010] [Accepted: 03/29/2011] [Indexed: 12/03/2022] Open
Abstract
This paper introduces a supervised learning method for finding diagnostic regions of interest in histopathological images. The method is based on the cognitive process of visual selection of relevant regions that arises during a pathologist's image examination. The proposed strategy emulates the interaction of the visual cortex areas V1, V2 and V4, being the V1 cortex responsible for assigning local levels of relevance to visual inputs while the V2 cortex gathers together these small regions according to some weights modulated by the V4 cortex, which stores some learned rules. This novel strategy can be considered as a complex mix of "bottom-up" and "top-down" mechanisms, integrated by calculating a unique index inside each region. The method was evaluated on a set of 338 images in which an expert pathologist had drawn the Regions of Interest. The proposed method outperforms two state-of-the-art methods devised to determine Regions of Interest (RoIs) in natural images. The quality gain with respect to an adaptated Itti's model which found RoIs was 3.6 dB in average, while with respect to the Achanta's proposal was 4.9 dB.
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Affiliation(s)
- Ricardo Gutiérrez
- Telemedicine Centre, National University of Colombia, Carrera 30 No, 45-03, Medicine Faculty, Building 471, Bogotá, Colombia
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15
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Daunizeau J, den Ouden HEM, Pessiglione M, Kiebel SJ, Stephan KE, Friston KJ. Observing the observer (I): meta-bayesian models of learning and decision-making. PLoS One 2010; 5:e15554. [PMID: 21179480 PMCID: PMC3001878 DOI: 10.1371/journal.pone.0015554] [Citation(s) in RCA: 99] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2010] [Accepted: 11/12/2010] [Indexed: 11/19/2022] Open
Abstract
In this paper, we present a generic approach that can be used to infer how subjects make optimal decisions under uncertainty. This approach induces a distinction between a subject's perceptual model, which underlies the representation of a hidden “state of affairs” and a response model, which predicts the ensuing behavioural (or neurophysiological) responses to those inputs. We start with the premise that subjects continuously update a probabilistic representation of the causes of their sensory inputs to optimise their behaviour. In addition, subjects have preferences or goals that guide decisions about actions given the above uncertain representation of these hidden causes or state of affairs. From a Bayesian decision theoretic perspective, uncertain representations are so-called “posterior” beliefs, which are influenced by subjective “prior” beliefs. Preferences and goals are encoded through a “loss” (or “utility”) function, which measures the cost incurred by making any admissible decision for any given (hidden) state of affair. By assuming that subjects make optimal decisions on the basis of updated (posterior) beliefs and utility (loss) functions, one can evaluate the likelihood of observed behaviour. Critically, this enables one to “observe the observer”, i.e. identify (context- or subject-dependent) prior beliefs and utility-functions using psychophysical or neurophysiological measures. In this paper, we describe the main theoretical components of this meta-Bayesian approach (i.e. a Bayesian treatment of Bayesian decision theoretic predictions). In a companion paper (‘Observing the observer (II): deciding when to decide’), we describe a concrete implementation of it and demonstrate its utility by applying it to simulated and real reaction time data from an associative learning task.
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Affiliation(s)
- Jean Daunizeau
- Wellcome Trust Centre for Neuroimaging, University College of London, London, United Kingdom.
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16
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Abstract
Distributed synchronization is known to occur at several scales in the brain, and has been suggested as playing a key functional role in perceptual grouping. State-of-the-art visual grouping algorithms, however, seem to give comparatively little attention to neural synchronization analogies. Based on the framework of concurrent synchronization of dynamical systems, simple networks of neural oscillators coupled with diffusive connections are proposed to solve visual grouping problems. The key idea is to embed the desired grouping properties in the choice of the diffusive couplings, so that synchronization of oscillators within each group indicates perceptual grouping of the underlying stimulative atoms, while desynchronization between groups corresponds to group segregation. Compared with state-of-the-art approaches, the same algorithm is shown to achieve promising results on several classical visual grouping problems, including point clustering, contour integration, and image segmentation.
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Affiliation(s)
- Guoshen Yu
- Electrical and Computer Engineering Department, University of Minnesota, Twin Cities, MN 55455 USA.
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Chinellato E, Del Pobil AP. The neuroscience of vision-based grasping: a functional review for computational modeling and bio-inspired robotics. J Integr Neurosci 2009; 8:223-54. [PMID: 19618488 DOI: 10.1142/s0219635209002137] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2009] [Revised: 05/12/2009] [Indexed: 11/18/2022] Open
Abstract
The topic of vision-based grasping is being widely studied in humans and in other primates using various techniques and with different goals. The fundamental related findings are reviewed in this paper, with the aim of providing researchers from different fields, including intelligent robotics and neural computation, a comprehensive but accessible view on the subject. A detailed description of the principal sensorimotor processes and the brain areas involved is provided following a functional perspective, in order to make this survey especially useful for computational modeling and bio-inspired robotic applications.
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Affiliation(s)
- Eris Chinellato
- Robotic Intelligence Lab, Jaume I University, Campus Riu Sec, 12071, Castellón de la Plana, Spain.
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Spratling MW. Reconciling predictive coding and biased competition models of cortical function. Front Comput Neurosci 2008; 2:4. [PMID: 18978957 PMCID: PMC2576514 DOI: 10.3389/neuro.10.004.2008] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2008] [Accepted: 10/09/2008] [Indexed: 11/13/2022] Open
Abstract
A simple variation of the standard biased competition model is shown, via some trivial mathematical manipulations, to be identical to predictive coding. Specifically, it is shown that a particular implementation of the biased competition model, in which nodes compete via inhibition that targets the inputs to a cortical region, is mathematically equivalent to the linear predictive coding model. This observation demonstrates that these two important and influential rival theories of cortical function are minor variations on the same underlying mathematical model.
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Tsanov M, Manahan-Vaughan D. Synaptic plasticity from visual cortex to hippocampus: systems integration in spatial information processing. Neuroscientist 2008; 14:584-97. [PMID: 18612086 DOI: 10.1177/1073858408315655] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The adult cerebral cortex possesses the remarkable ability to change its neuronal connectivity through experience, a phenomenon termed "synaptic plasticity." Synaptic plasticity constitutes a cellular mechanism that is thought to underlie information storage and memory formation in the brain, and represents a use-dependent long-lasting increase or decrease in synaptic strength. Recent findings, that the adult visual cortex undergoes dynamic synaptic plasticity that is driven by active visual experience, suggest that it may be involved in information processing that could contribute to memory formation. The visual cortex provides a crucial sensory input to the hippocampus, and is a key component for the creation of spatial memories. An understanding of how visual cortical neurons respond with synaptic plasticity to visual experience, and whether these responses influence the induction of hippocampal plasticity, is fundamental to our understanding of the neuronal mechanisms and functional consequences of visuospatial information processing. In this review, we summarize recent findings with regard to the expression of dynamic synaptic plasticity in the visual cortex and how this plasticity may influence information processing in the hippocampus.
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Affiliation(s)
- Marian Tsanov
- International Graduate School of Neuroscience and Medical Faculty, Department of Experimental Neurophysiology, Medical Faculty, Ruhr University Bochum, Germany
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20
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Abstract
Our visual percepts are not fully determined by the physical stimulus input. That is why we perceive crisp bounding contours even in the absence of luminance-defined borders in visual illusions such as the Kanizsa figure. It is important to understand which neural processes are involved in creating these artificial visual experiences because this might tell us how we perceive coherent objects in natural scenes, which are characterized by mutual overlap. We have already shown using functional magnetic resonance imaging [Maertens, M., & Pollmann, S. fMRI reveals a common neural substrate of illusory and real contours in v1 after perceptual learning. Journal of Cognitive Neuroscience, 17, 1553-1564, 2005] that neurons in the primary visual cortex (V1) respond to these stimuli. Here we provide support for the hypothesis that V1 is obligatory for the discrimination of the curvature of illusory contours. We presented illusory contours across the portion of the visual field corresponding to the physiological "blind spot." Four observers were extensively trained and asked to discriminate fine curvature differences in these illusory contours. A distinct performance drop (increased errors and response latencies) was observed when illusory contours traversed the blind spot compared to when they were presented in the "normal" contralateral visual field at the same eccentricity. We attribute this specific performance deficit to the failure to build up a representation of the illusory contour in the absence of a cortical representation of the "blind spot" within V1. The current results substantiate the assumption that neural activity in area V1 is closely related to our phenomenal experience of illusory contours in particular, and to the construction of our subjective percepts in general.
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Zhaoping L. Theoretical understanding of the early visual processes by data compression and data selection. NETWORK (BRISTOL, ENGLAND) 2006; 17:301-34. [PMID: 17283516 DOI: 10.1080/09548980600931995] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Early vision is best understood in terms of two key information bottlenecks along the visual pathway -- the optic nerve and, more severely, attention. Two effective strategies for sampling and representing visual inputs in the light of the bottlenecks are (1) data compression with minimum information loss and (2) data deletion. This paper reviews two lines of theoretical work which understand processes in retina and primary visual cortex (V1) in this framework. The first is an efficient coding principle which argues that early visual processes compress input into a more efficient form to transmit as much information as possible through channels of limited capacity. It can explain the properties of visual sampling and the nature of the receptive fields of retina and V1. It has also been argued to reveal the independent causes of the inputs. The second theoretical tack is the hypothesis that neural activities in V1 represent the bottom up saliencies of visual inputs, such that information can be selected for, or discarded from, detailed or attentive processing. This theory links V1 physiology with pre-attentive visual selection behavior. By making experimentally testable predictions, the potentials and limitations of both sets of theories can be explored.
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Affiliation(s)
- Li Zhaoping
- Department of Psychology, University College London. UK.
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23
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Abstract
Skeletal representations of shape have attracted enormous interest ever since their introduction by Blum [Blum H (1973) J Theor Biol 38:205-287], because of their potential to provide a compact, but meaningful, shape representation, suitable for both neural modeling and computational applications. But effective computation of the shape skeleton remains a notorious unsolved problem; existing approaches are extremely sensitive to noise and give counterintuitive results with simple shapes. In conventional approaches, the skeleton is defined by a geometric construction and computed by a deterministic procedure. We introduce a Bayesian probabilistic approach, in which a shape is assumed to have "grown" from a skeleton by a stochastic generative process. Bayesian estimation is used to identify the skeleton most likely to have produced the shape, i.e., that best "explains" it, called the maximum a posteriori skeleton. Even with natural shapes with substantial contour noise, this approach provides a robust skeletal representation whose branches correspond to the natural parts of the shape.
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Affiliation(s)
- Jacob Feldman
- Department of Psychology, Center for Cognitive Science, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.
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Sherwood CC, Raghanti MA, Stimpson CD, Bonar CJ, de Sousa AA, Preuss TM, Hof PR. Scaling of inhibitory interneurons in areas v1 and v2 of anthropoid primates as revealed by calcium-binding protein immunohistochemistry. BRAIN, BEHAVIOR AND EVOLUTION 2006; 69:176-95. [PMID: 17106195 DOI: 10.1159/000096986] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2006] [Accepted: 04/25/2006] [Indexed: 11/19/2022]
Abstract
Inhibitory GABAergic interneurons are important for shaping patterns of activity in neocortical networks. We examined the distributions of inhibitory interneuron subtypes in layer II/III of areas V1 and V2 in 18 genera of anthropoid primates including New World monkeys, Old World monkeys, and hominoids (apes and humans). Interneuron subtypes were identified by immunohistochemical staining for calbindin, calretinin, and parvalbumin and densities were quantified using the optical disector method. In both V1 and V2, calbindin-immunoreactive neuron density decreased disproportionately with decreasing total neuronal density. Thus, V1 and V2 of hominoids were occupied by a smaller percentage of calbindin-immunoreactive interneurons compared to monkeys who have greater overall neuronal densities. At the transition from V1 to V2 across all individuals, we found a tendency for increased percentages of calbindin-immunoreactive multipolar cells and calretinin-immunoreactive interneurons. In addition, parvalbumin-immunoreactive cell soma volumes increased from V1 to V2. These findings suggest that modifications of specific aspects of inhibition might be critical to establishing the receptive field properties that distinguish visual areas. Furthermore, these results show that phylogenetic variation exists in the microcircuitry of visual cortex that could have general implications for sensory processing.
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Affiliation(s)
- Chet C Sherwood
- Department of Anthropology, The George Washington University, Washington, DC 20052, USA.
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Yu S, Wang Y, Li X, Zhou Y, Leventhal AG. Functional degradation of extrastriate visual cortex in senescent rhesus monkeys. Neuroscience 2006; 140:1023-9. [PMID: 16678974 DOI: 10.1016/j.neuroscience.2006.01.015] [Citation(s) in RCA: 75] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2005] [Revised: 01/18/2006] [Accepted: 01/25/2006] [Indexed: 11/16/2022]
Abstract
The receptive field properties of striate cortical (V1) cells degrade in senescent macaque monkeys. We have now carried out extracellular single unit studies of the receptive field properties of cells in extrastriate visual cortex (area V2) in very old rhesus (Macaca mulatta) monkeys. This study provides evidence that both the orientation and direction selectivities of V2 cells in old monkeys degrade significantly. Decreased selectivity is accompanied by increased visually driven and spontaneous responses. As a result, V2 cells in old animals exhibit markedly decreased signal-to-noise ratios. A significant degradation of neural function in extrastriate cortex may underlie the declines in higher order visual function that accompany normal aging.
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Affiliation(s)
- S Yu
- Department of Neurobiology and Biophysics, University of Science and Technology of China, Hefei, Anhui 230027, PR China
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Guo K, Robertson R, Nevado A, Pulgarin M, Mahmoodi S, Young MP. Primary visual cortex neurons that contribute to resolve the aperture problem. Neuroscience 2006; 138:1397-406. [PMID: 16446037 DOI: 10.1016/j.neuroscience.2005.12.016] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2005] [Revised: 12/09/2005] [Accepted: 12/10/2005] [Indexed: 11/23/2022]
Abstract
It is traditional to believe that neurons in primary visual cortex are sensitive only or principally to stimulation within a spatially restricted receptive field (classical receptive field). It follows from this that they should only be capable of encoding the direction of stimulus movement orthogonal to the local contour, since this is the only information available in their classical receptive field "aperture." This direction is not necessarily the same as the motion of the entire object, as the direction cue within an aperture is ambiguous to the global direction of motion, which can only be derived by integrating with unambiguous components of the object. Recent results, however, show that primary visual cortex neurons can integrate spatially and temporally distributed cues outside the classical receptive field, and so we reexamined whether primary visual cortex neurons suffer the "aperture problem." With the stimulation of an optimally oriented bar drifting across the classical receptive field in different global directions, here we show that a subpopulation of primary visual cortex neurons (25/81) recorded from anesthetized and paralyzed marmosets is capable of integrating informative unambiguous direction cues presented by the bar ends, well outside their classical receptive fields, to encode global motion direction. Although the stimuli within the classical receptive field were identical, their directional responses were significantly modulated according to the global direction of stimulus movement. Hence, some primary visual cortex neurons are not local motion energy filters, but may encode signals that contribute directly to global motion processing.
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Affiliation(s)
- K Guo
- Institute for Neuroscience and Psychology, Brain and Behaviour Group, School of Biology, Henry Wellcome Building for Neuroecology, University of Newcastle, Newcastle upon Tyne NE2 4HH, UK.
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Maertens M, Pollmann S. fMRI Reveals a Common Neural Substrate of Illusory and Real Contours in V1 after Perceptual Learning. J Cogn Neurosci 2005; 17:1553-64. [PMID: 16269096 DOI: 10.1162/089892905774597209] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Abstract
Perceptual learning involves the specific and relatively permanent modification of perception following a sensory experience. In psychophysical experiments, the specificity of the learning effects to the trained stimulus attributes (e.g., visual field position or stimulus orientation) is often attributed to assumed neural modifications at an early cortical site within the visual processing hierarchy. We directly investigated a neural correlate of perceptual learning in the primary visual cortex using fMRI. Twenty volunteers practiced a curvature discrimination on Kanizsa-type illusory contours in the MR scanner. Practice-induced changes in the BOLD response to illusory contours were compared between the pretraining and the posttraining block in those areas of the primary visual cortex (V1) that, in the same session, had been identified to represent real contours at corresponding visual field locations. A retinotopically specific BOLD signal increase to illusory contours was observed as a consequence of the training, possibly signaling the formation of a contour representation, which is necessary for performing the curvature discrimination. The effects of perceptual training were maintained over a period of about 10 months, and they were specific to the trained visual field position. The behavioral specificity of the learning effects supports an involvement of V1 in perceptual learning, and not in unspecific attentional effects.
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Abstract
Visual object perception is usually studied by presenting one object at a time at the fovea. However, the world around us is composed of multiple objects. The way our visual system deals with this complexity has remained controversial in the literature. Some models claim that the ventral pathway, a set of visual cortical areas responsible for object recognition, can process only one or very few objects at a time without ambiguity. Other models argue in favor of a massively parallel processing of objects in a scene. Recent experiments in monkeys have provided important data about this issue. The ventral pathway seems to be able to perform complex analyses on several objects simultaneously, but only during a short time period. Subsequently only one or very few objects are explicitly selected and consciously perceived. Here, we survey the implications of these new findings for our understanding of object processing.
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Abstract
One of the most important goals of neuroscience is to establish precise structure-function relationships in the brain. Since the 19th century, a major scientific endeavour has been to associate structurally distinct cortical regions with specific cognitive functions. This was traditionally accomplished by correlating microstructurally defined areas with lesion sites found in patients with specific neuropsychological symptoms. Modern neuroimaging techniques with high spatial resolution have promised an alternative approach, enabling non-invasive measurements of regionally specific changes of brain activity that are correlated with certain components of a cognitive process. Reviewing classic approaches towards brain structure-function relationships that are based on correlational approaches, this article argues that these approaches are not sufficient to provide an understanding of the operational principles of a dynamic system such as the brain but must be complemented by models based on general system theory. These models reflect the connectional structure of the system under investigation and emphasize context-dependent couplings between the system elements in terms of effective connectivity. The usefulness of system models whose parameters are fitted to measured functional imaging data for testing hypotheses about structure-function relationships in the brain and their potential for clinical applications is demonstrated by several empirical examples.
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Affiliation(s)
- Klaas Enno Stephan
- The Wellcome Department of Imaging Neuroscience, Institute of Neurology, University College London, UK.
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Abstract
A recurrent network is proposed with the ability to bind image features into a unified surface representation within a single layer and without capacity limitations or border effects. A group of cells belonging to the same object or surface is labeled with the same activity amplitude, while cells in different groups are kept segregated due to lateral inhibition. Labeling is achieved by activity spreading through local excitatory connections. In order to prevent uncontrolled spreading, a separate network computes the intensity difference between neighboring locations and signals the presence of the surface boundary, which constrains local excitation. The quality of surface representation is not compromised due to the self-excitation. The model is also applied on gray-level images. In order to remove small, noisy regions, a feedforward network is proposed that computes the size of surfaces. Size estimation is based on the difference of dendritic inhibition in lateral excitatory and inhibitory pathways, which allows the network to selectively integrate signals only from cells with the same activity amplitude. When the output of the size estimation network is combined with the recurrent network, good segmentation results are obtained. Both networks are based on biophysically realistic mechanisms such as dendritic inhibition and multiplicative integration among different dendritic branches.
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Affiliation(s)
- Drazen Domijan
- Department of Psychology, Faculty of Philosophy, University of Rijeka, Trg Ivana Klobucarica 1, HR-51000 Rijeka, Croatia.
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