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Hurali DT, Banerjee M, Ballal A. Unravelling the involvement of protein disorder in cyanobacterial stress responses. Int J Biol Macromol 2024; 277:133934. [PMID: 39025183 DOI: 10.1016/j.ijbiomac.2024.133934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Revised: 07/09/2024] [Accepted: 07/15/2024] [Indexed: 07/20/2024]
Abstract
This study has explored the involvement of Intrinsically Disordered Proteins (IDPs) in cyanobacterial stress response. IDPs possess distinct physicochemical properties, which allow them to execute diverse functions. Anabaena PCC 7120, the model photosynthetic, nitrogen-fixing cyanobacterium encodes 688 proteins (11 % of the total proteome) with at least one intrinsically disordered region (IDR). Of these, 130 proteins that showed >30 % overall disorder were designated as IDPs. Physico-chemical analysis, showed these IDPs to adopt shapes ranging from 'globular' to 'tadpole-like'. Upon exposure to NaCl, 41 IDP-encoding genes were found to be differentially expressed. Surprisingly, most of these were induced, indicating the importance of IDP-accumulation in overcoming salt stress. Subsequently, six IDPs were identified to be induced by multiple stresses (salt, ammonium and selenite). Interestingly, the presence of these 6-multiple stress-induced IDPs was conserved in filamentous cyanobacteria. Utilizing the experimental proteomic data of Anabaena, these 6 IDPs were found to interact with many proteins involved in diverse pathways, underscoring their physiological importance as protein hubs. This study lays the framework for IDP-related research in Anabaena by (a) identifying, as well as physiochemically characterizing, all the disordered proteins and (b) uncovering a subset of IDPs that are likely to be critical in adaptation to environmental stresses.
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Affiliation(s)
- Deepak T Hurali
- Molecular Biology Division, Bhabha Atomic Research Centre, Mumbai 400085, India; Homi Bhabha National Institute, Anushakti Nagar, Mumbai 400094, India
| | - Manisha Banerjee
- Molecular Biology Division, Bhabha Atomic Research Centre, Mumbai 400085, India; Homi Bhabha National Institute, Anushakti Nagar, Mumbai 400094, India.
| | - Anand Ballal
- Molecular Biology Division, Bhabha Atomic Research Centre, Mumbai 400085, India; Homi Bhabha National Institute, Anushakti Nagar, Mumbai 400094, India.
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2
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Anand V, Pandey A. Unlocking the potential of SiO 2 and CeO 2 nanoparticles for arsenic mitigation in Vigna mungo L. Hepper (Blackgram). ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:34473-34491. [PMID: 38704781 DOI: 10.1007/s11356-024-33531-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Accepted: 04/27/2024] [Indexed: 05/07/2024]
Abstract
In this study, the interaction effects of NaAsO2 (1 and 5 μM), SiO2 NPs (10 and 100 mg/L) and CeO2 NPs (10 and 100 mg/L) were assessed in Vigna mungo (Blackgram). The treatment of NaAsO2, SiO2, CeO2-NPs and combinations of NPs & As were applied to blackgram plants under hydroponic conditions. After its application, the morpho-physiological, antioxidant activity, and phytochemical study were evaluated. At 10 and 100 mg/L of SiO2 and CeO2-NPs, there was an increase in antioxidative enzymatic activity (p < 0.05) and reactive oxygen species (ROS). However, substantial ROS accumulation was observed at 1 and 5 μM NaAsO2 and 100 mg/L SiO2 NPs (p < 0.05). Additionally, at such concentrations, there is a substantial reduction in photosynthetic pigments, nitrogen fixation, chlorosis, and plant development when compared to controls (p < 0.05). The combination of SiO2 and CeO2 NPs (10 and 100 mg/L) with NaAsO2 decreased superoxide radical and hydrogen peroxide and improved SOD, CAT, APX, GR, and chlorophyll pigments (p < 0.05). Further FTIR results were evaluated for documenting elemental and phytochemical analysis.
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Affiliation(s)
- Vandita Anand
- Department of Biotechnology, Motilal Nehru National Institute of Technology (MNNIT) Allahabad, Prayagraj, 211004, India
| | - Anjana Pandey
- Department of Biotechnology, Motilal Nehru National Institute of Technology (MNNIT) Allahabad, Prayagraj, 211004, India.
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Al-Khiat SH, Bukhari NA, Ameen F, Abdel-Raouf N. Comparison of the microalgae Phormidium tenue and Chlorella vulgaris as biosorbents of Cd and Zn from aqueous environments. ENVIRONMENTAL RESEARCH 2023; 235:116675. [PMID: 37453511 DOI: 10.1016/j.envres.2023.116675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2023] [Revised: 06/26/2023] [Accepted: 07/13/2023] [Indexed: 07/18/2023]
Abstract
Heavy metals are accumulating into sediments and enriching in aquatic food chains. The efficiency of two microalgae, Phormidium tenue and Chlorella vulgaris, to remove zinc and cadmium from aqueous solutions was studied. The microalgae were incubated in different heavy metal concentrations for 18 days. Morphological and anatomical changes in microalgae were investigated using a scanning electron microscope (SEM) and a transmission electron microscope (TEM). Both algae removed both Zn2+ and Cd2+in vitro. C. vulgaris removed Zn2+ almost totally (99%) and Cd2+ slightly less (87%). The concentration factors were 2210 and 1117, respectively. SEM and TEM figures showed some alterations in the form and cellular components of both algae. C. vulgaris appeared to be more tolerant to both Cd and Zn than P. tenue. C. vulgaris is a promising microalgal species used to remove heavy metals from aqueous environments.
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Affiliation(s)
- Soad H Al-Khiat
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia
| | - Najat A Bukhari
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia
| | - Fuad Ameen
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia.
| | - Neveen Abdel-Raouf
- Department of Biology, College of Science and Humanities in Al-Kharj, Prince Sattam Bin Abdulaziz University, Al-Kharj, 11942, Saudi Arabia; Botany and Microbiology Department, Faculty of Science, Beni-Suef University, Beni-Suef, 65211, Egypt
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4
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Fernandez-Lopez L, Roda S, Robles-Martín A, Muñoz-Tafalla R, Almendral D, Ferrer M, Guallar V. Enhancing the Hydrolytic Activity of a Lipase towards Larger Triglycerides through Lid Domain Engineering. Int J Mol Sci 2023; 24:13768. [PMID: 37762071 PMCID: PMC10530837 DOI: 10.3390/ijms241813768] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 08/23/2023] [Accepted: 09/01/2023] [Indexed: 09/29/2023] Open
Abstract
Lipases have valuable potential for industrial use, particularly those mostly active against water-insoluble substrates, such as triglycerides composed of long-carbon chain fatty acids. However, in most cases, engineered variants often need to be constructed to achieve optimal performance for such substrates. Protein engineering techniques have been reported as strategies for improving lipase characteristics by introducing specific mutations in the cap domain of esterases or in the lid domain of lipases or through lid domain swapping. Here, we improved the lipase activity of a lipase (WP_075743487.1, or LipMRD) retrieved from the Marine Metagenomics MarRef Database and assigned to the Actinoalloteichus genus. The improvement was achieved through site-directed mutagenesis and by substituting its lid domain (FRGTEITQIKDWLTDA) with that of Rhizopus delemar lipase (previously R. oryzae; UniProt accession number, I1BGQ3) (FRGTNSFRSAITDIVF). The results demonstrated that the redesigned mutants gain activity against bulkier triglycerides, such as glyceryl tridecanoate and tridodecanoate, olive oil, coconut oil, and palm oil. Residue W89 (LipMRD numbering) appears to be key to the increase in lipase activity, an increase that was also achieved with lid swapping. This study reinforces the importance of the lid domains and their amino acid compositions in determining the substrate specificity of lipases, but the generalization of the lid domain swapping between lipases or the introduction of specific mutations in the lid domain to improve lipase activity may require further investigation.
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Affiliation(s)
- Laura Fernandez-Lopez
- Instituto de Catalisis y Petroleoquimica (ICP), CSIC, 28049 Madrid, Spain; (L.F.-L.); (D.A.)
| | - Sergi Roda
- Department of Life Sciences, Barcelona Supercomputing Center (BSC), 08034 Barcelona, Spain; (S.R.); (A.R.-M.); (R.M.-T.)
| | - Ana Robles-Martín
- Department of Life Sciences, Barcelona Supercomputing Center (BSC), 08034 Barcelona, Spain; (S.R.); (A.R.-M.); (R.M.-T.)
- PhD Programme, Faculty of Pharmacy and Food Science, Universitat de Barcelona (UB), 08007 Barcelona, Spain
| | - Rubén Muñoz-Tafalla
- Department of Life Sciences, Barcelona Supercomputing Center (BSC), 08034 Barcelona, Spain; (S.R.); (A.R.-M.); (R.M.-T.)
- PhD Programme, Faculty of Pharmacy and Food Science, Universitat de Barcelona (UB), 08007 Barcelona, Spain
| | - David Almendral
- Instituto de Catalisis y Petroleoquimica (ICP), CSIC, 28049 Madrid, Spain; (L.F.-L.); (D.A.)
| | - Manuel Ferrer
- Instituto de Catalisis y Petroleoquimica (ICP), CSIC, 28049 Madrid, Spain; (L.F.-L.); (D.A.)
| | - Víctor Guallar
- Department of Life Sciences, Barcelona Supercomputing Center (BSC), 08034 Barcelona, Spain; (S.R.); (A.R.-M.); (R.M.-T.)
- Institution for Research and Advanced Studies (ICREA), 08010 Barcelona, Spain
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5
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Cassier-Chauvat C, Marceau F, Farci S, Ouchane S, Chauvat F. The Glutathione System: A Journey from Cyanobacteria to Higher Eukaryotes. Antioxidants (Basel) 2023; 12:1199. [PMID: 37371929 DOI: 10.3390/antiox12061199] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Revised: 05/25/2023] [Accepted: 05/29/2023] [Indexed: 06/29/2023] Open
Abstract
From bacteria to plants and humans, the glutathione system plays a pleiotropic role in cell defense against metabolic, oxidative and metal stresses. Glutathione (GSH), the γ-L-glutamyl-L-cysteinyl-glycine nucleophile tri-peptide, is the central player of this system that acts in redox homeostasis, detoxification and iron metabolism in most living organisms. GSH directly scavenges diverse reactive oxygen species (ROS), such as singlet oxygen, superoxide anion, hydrogen peroxide, hydroxyl radical, nitric oxide and carbon radicals. It also serves as a cofactor for various enzymes, such as glutaredoxins (Grxs), glutathione peroxidases (Gpxs), glutathione reductase (GR) and glutathione-S-transferases (GSTs), which play crucial roles in cell detoxication. This review summarizes what is known concerning the GSH-system (GSH, GSH-derived metabolites and GSH-dependent enzymes) in selected model organisms (Escherichia coli, Saccharomyces cerevisiae, Arabidopsis thaliana and human), emphasizing cyanobacteria for the following reasons. Cyanobacteria are environmentally crucial and biotechnologically important organisms that are regarded as having evolved photosynthesis and the GSH system to protect themselves against the ROS produced by their active photoautotrophic metabolism. Furthermore, cyanobacteria synthesize the GSH-derived metabolites, ergothioneine and phytochelatin, that play crucial roles in cell detoxication in humans and plants, respectively. Cyanobacteria also synthesize the thiol-less GSH homologs ophthalmate and norophthalmate that serve as biomarkers of various diseases in humans. Hence, cyanobacteria are well-suited to thoroughly analyze the role/specificity/redundancy of the players of the GSH-system using a genetic approach (deletion/overproduction) that is hardly feasible with other model organisms (E. coli and S. cerevisiae do not synthesize ergothioneine, while plants and humans acquire it from their soil and their diet, respectively).
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Affiliation(s)
- Corinne Cassier-Chauvat
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), F-91190 Gif-sur-Yvette, France
| | - Fanny Marceau
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), F-91190 Gif-sur-Yvette, France
| | - Sandrine Farci
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), F-91190 Gif-sur-Yvette, France
| | - Soufian Ouchane
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), F-91190 Gif-sur-Yvette, France
| | - Franck Chauvat
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), F-91190 Gif-sur-Yvette, France
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Sriwastaw S, Rai R, Raj A, Kesari V, Rai LC. All3048, a DnaJ III homolog of Anabaena sp. PCC7120 mediates heat shock response in E. coli and its N-terminus J-domain stimulates DnaK ATPase activity. Int J Biol Macromol 2023; 233:123563. [PMID: 36746302 DOI: 10.1016/j.ijbiomac.2023.123563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 01/31/2023] [Accepted: 02/01/2023] [Indexed: 02/05/2023]
Abstract
Cyanobacterial DnaJ offers thermo-tolerance and effectively prevents aggregation of denatured protein in coordination with DnaK. The hypothetical protein All3048 of Anabaena sp. PCC7120 was found to be a 24 kDa DnaJ III protein with a putative J-domain at the extreme N-terminus. This paper decodes the role of All3048 in thermo-tolerance and as a co-chaperon of DnaK. Semi-quantitative and RT-PCR results showed up-accumulation of all3048 in heat, UV-B, cadmium, arsenic and salt. BL21/pET-28a-all3048, all3048(1-95) and all3048(31-128) reduced the heat stress-induced ROS generation by 40 %, 21 % and 24 % as compared to BL21/pET-28-a. Conformational properties of All3048 and its truncated variants were assessed using bis ANS, guanidine hydrochloride and acrylamide quenching. All3048(1-95), All3048 and All3048(31-128) increased DnaK ATPase activity by 8.6, 8.2, and 2.5 fold, respectively. The thermostability investigated using DSC and DSF methods affirmed the relative stability of All3048 and All3048 (31-128), whereas All3048 (1-95) was the least stable. All3048 is a novel cyanobacterial DnaJ III that imparts heat stress tolerance in E. coli; however, only the J-domain present at N-terminus was sufficient for stimulating DnaK's ATPase activity.
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Affiliation(s)
- Sonam Sriwastaw
- Molecular Biology Section, Department of Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Ruchi Rai
- Molecular Biology Section, Department of Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Alka Raj
- Molecular Biology Section, Department of Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Vigya Kesari
- Molecular Biology Section, Department of Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - L C Rai
- Molecular Biology Section, Department of Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India.
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Li Y, Guo L, Yang R, Yang Z, Zhang H, Li Q, Cao Z, Zhang X, Gao P, Gao W, Yan G, Huang D, Sun W. Thiobacillus spp. and Anaeromyxobacter spp. mediate arsenite oxidation-dependent biological nitrogen fixation in two contrasting types of arsenic-contaminated soils. JOURNAL OF HAZARDOUS MATERIALS 2023; 443:130220. [PMID: 36308931 DOI: 10.1016/j.jhazmat.2022.130220] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Revised: 10/14/2022] [Accepted: 10/18/2022] [Indexed: 06/16/2023]
Abstract
As(III) oxidation-dependent biological nitrogen fixing (As-dependent BNF) bacteria use a novel biogeochemical process observed in tailings recently. However, our understanding of microorganisms responsible for As-dependent BNF is limited and whether such a process occurs in As-contaminated soils is still unknown. In this study, two contrasting types of soils (surface soils versus river sediments) heavily contaminated by As were selected to study the occurrence of As-dependent BNF. BNF was observed in sediments and soils amended with As(III), whereas no apparent BNF was found in the cultures without As(III). The increased abundances of the nitrogenase gene (nifH) and As(III) oxidation gene (aioA) suggest that an As-dependent BNF process was catalyzed by microorganisms harboring nifH and aioA. In addition, DNA-SIP demonstrated that Thiobacillus spp. and Anaeromyxobacter spp. were putative As-dependent BNF bacteria in As-contaminated soils and sediments, respectively. Metagenomic analysis further suggested that these taxa contained genes responsible for BNF, As(III) oxidation, and CO2 fixation, demonstrating their capability for serving as As-dependent BNF. These results indicated the occurrence of As-dependent BNF in various As-contaminated habitats. The contrasting geochemical conditions in different types of soil suggested that these conditions may enrich different As-dependent BNF bacteria (Thiobacillus spp. for soils and Anaeromyxobacter spp. for sediments).
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Affiliation(s)
- Yongbin Li
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Lifang Guo
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Rui Yang
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Zhaohui Yang
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, China
| | - Haihan Zhang
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Qiqian Li
- College of Chemical and Biological Engineering, Hechi University, Yizhou 546300, China
| | - Zhiguo Cao
- School of Environment, Key Laboratory for Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Henan Normal University, Xinxiang 453007, China
| | - Xin Zhang
- School of Environment, Key Laboratory for Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Henan Normal University, Xinxiang 453007, China
| | - Pin Gao
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Wenlong Gao
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Geng Yan
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Duanyi Huang
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Weimin Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China.
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Srivastava R, Kanda T, Yadav S, Singh N, Yadav S, Prajapati R, Kesari V, Atri N. Salinity pretreatment synergies heat shock toxicity in cyanobacterium Anabaena PCC7120. Front Microbiol 2023; 14:1061927. [PMID: 36876104 PMCID: PMC9983364 DOI: 10.3389/fmicb.2023.1061927] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Accepted: 01/16/2023] [Indexed: 02/18/2023] Open
Abstract
This study was undertaken to bridge the knowledge gap pertaining to cyanobacteria's response to pretreatment. The result elucidates the synergistic effect of pretreatment toxicity in cyanobacterium Anabaena PCC7120 on morphological and biochemical attributes. Chemical (salt) and physical (heat) stress-pretreated cells exhibited significant and reproducible changes in terms of growth pattern, morphology, pigments, lipid peroxidation, and antioxidant activity. Salinity pretreatment showed more than a five-fold decrease in the phycocyanin content but a six-fold and five-fold increase in carotenoid, lipid peroxidation (MDA content), and antioxidant activity (SOD and CAT) at 1 h and on 3rd day of treatment, respectively, giving the impression of stress-induced free radicals that are scavenged by antioxidants when compared to heat shock pretreatment. Furthermore, quantitative analysis of transcript (qRT-PCR) for FeSOD and MnSOD displayed a 3.6- and 1.8-fold increase in salt-pretreated (S-H) samples. The upregulation of transcript corresponding to salt pretreatment suggests a toxic role of salinity in synergizing heat shock. However, heat pretreatment suggests a protective role in mitigating salt toxicity. It could be inferred that pretreatment enhances the deleterious effect. However, it further showed that salinity (chemical stress) augments the damaging effect of heat shock (physical stress) more profoundly than physical stress on chemical stress possibly by modulating redox balance via activation of antioxidant responses. Our study reveals that upon pretreatment of heat, the negative effect of salt can be mitigated in filamentous cyanobacteria, thus providing a foundation for improved cyanobacterial tolerance to salt stress.
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Affiliation(s)
- Rupanshee Srivastava
- Department of Botany, Institute of Sciences, Banaras Hindu University, Varanasi, India
| | - Tripti Kanda
- Department of Botany, Institute of Sciences, Banaras Hindu University, Varanasi, India
| | - Sadhana Yadav
- Department of Botany, Institute of Sciences, Banaras Hindu University, Varanasi, India
| | - Nidhi Singh
- Department of Botany, Institute of Sciences, Banaras Hindu University, Varanasi, India
| | - Shivam Yadav
- Department of Botany, Thakur Prasad Singh (T.P.S.) College, Patna, Bihar, India
| | - Rajesh Prajapati
- Department of Botany, Institute of Sciences, Banaras Hindu University, Varanasi, India
| | - Vigya Kesari
- Department of Botany, Institute of Sciences, Banaras Hindu University, Varanasi, India
| | - Neelam Atri
- Department of Botany, Mahila Mahavidyalaya (M.M.V.), Banaras Hindu University, Varanasi, India
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9
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Mechanisms of Stress Tolerance in Cyanobacteria under Extreme Conditions. STRESSES 2022. [DOI: 10.3390/stresses2040036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Cyanobacteria are oxygen-evolving photoautotrophs with worldwide distribution in every possible habitat, and they account for half of the global primary productivity. Because of their ability to thrive in a hostile environment, cyanobacteria are categorized as “extremophiles”. They have evolved a fascinating repository of distinct secondary metabolites and biomolecules to promote their development and survival in various habitats, including severe conditions. However, developing new proteins/enzymes and metabolites is mostly directed by an appropriate gene regulation system that results in stress adaptations. However, only few proteins have been characterized to date that have the potential to improve resistance against abiotic stresses. As a result, studying environmental stress responses to post-genomic analysis, such as proteome changes using latest structural proteomics and synthetic biology techniques, is critical. In this regard, scientists working on these topics will benefit greatly from the stress of proteomics research. Progress in these disciplines will aid in understanding cyanobacteria’s physiology, biochemical, and metabolic systems. This review summarizes the most recent key findings of cyanobacterial proteome study under various abiotic stresses and the application of secondary metabolites formed during different abiotic conditions.
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10
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Rai KK, Singh S, Rai R, Rai LC. Functional characterization of two WD40 family proteins, Alr0671 and All2352, from Anabaena PCC 7120 and deciphering their role in abiotic stress management. PLANT MOLECULAR BIOLOGY 2022; 110:545-563. [PMID: 35997919 DOI: 10.1007/s11103-022-01306-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Accepted: 08/01/2022] [Indexed: 06/15/2023]
Abstract
WD40 domain-containing proteins are one of the eukaryotes' most ancient and ubiquitous protein families. Little is known about the presence and function of these proteins in cyanobacteria in general and Anabaena in particular. In silico analysis confirmed the presence of WD40 repeats. Gene expression analysis indicated that the transcript levels of both the target proteins were up-regulated up to 4 fold in Cd and drought and 2-3 fold in heat, salt, and UV-B stress. Using a fluorescent oxidative stress indicator, we showed that the recombinant proteins were scavenging reactive oxygen species (ROS) (4-5 fold) more efficiently than empty vectors. Chromatin immunoprecipitation analysis (ChIP) and electrophoretic mobility shift assay (EMSA) revealed that the target proteins function as transcription factors after binding to the promoter sequences. The presence of kinase activity (2-4 fold) in the selected proteins indicated that these proteins could modulate the functions of other cellular proteins under stress conditions by inducing phosphorylation of specific amino acids. The chosen proteins also demonstrated interaction with Zn, Cd, and Cu (1.4-2.5 fold), which might stabilize the proteins' structure and biophysical functions under multiple abiotic stresses. The functionally characterized Alr0671 and All2352 proteins act as transcription factors and offer tolerance to agriculturally relevant abiotic stresses.
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Affiliation(s)
- Krishna Kumar Rai
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, 221005, Varanasi, India
| | - Shilpi Singh
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, 221005, Varanasi, India
| | - Ruchi Rai
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, 221005, Varanasi, India
| | - L C Rai
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, 221005, Varanasi, India.
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11
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Acosta-Grinok M, Vázquez S, Guiliani N, Marín S, Demergasso C. Looking for the mechanism of arsenate respiration of Fusibacter sp. strain 3D3, independent of ArrAB. Front Microbiol 2022; 13:1029886. [PMID: 36532432 PMCID: PMC9751042 DOI: 10.3389/fmicb.2022.1029886] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2022] [Accepted: 11/08/2022] [Indexed: 12/02/2022] Open
Abstract
The literature has reported the isolation of arsenate-dependent growing microorganisms which lack a canonical homolog for respiratory arsenate reductase, ArrAB. We recently isolated an arsenate-dependent growing bacterium from volcanic arsenic-bearing environments in Northern Chile, Fusibacter sp. strain 3D3 (Fas) and studied the arsenic metabolism in this Gram-positive isolate. Features of Fas deduced from genome analysis and comparative analysis with other arsenate-reducing microorganisms revealed the lack of ArrAB coding genes and the occurrence of two arsC genes encoding for putative cytoplasmic arsenate reductases named ArsC-1 and ArsC-2. Interestingly, ArsC-1 and ArsC-2 belong to the thioredoxin-coupled family (because of the redox-active disulfide protein used as reductant), but they conferred differential arsenate resistance to the E. coli WC3110 ΔarsC strain. PCR experiments confirmed the absence of arrAB genes and results obtained using uncouplers revealed that Fas growth is linked to the proton gradient. In addition, Fas harbors ferredoxin-NAD+ oxidoreductase (Rnf) and electron transfer flavoprotein (etf) coding genes. These are key molecular markers of a recently discovered flavin-based electron bifurcation mechanism involved in energy conservation, mainly in anaerobic metabolisms regulated by the cellular redox state and mostly associated with cytoplasmic enzyme complexes. At least three electron-bifurcating flavoenzyme complexes were evidenced in Fas, some of them shared in conserved genomic regions by other members of the Fusibacter genus. These physiological and genomic findings permit us to hypothesize the existence of an uncharacterized arsenate-dependent growth metabolism regulated by the cellular redox state in the Fusibacter genus.
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Affiliation(s)
| | - Susana Vázquez
- Cátedra de Biotecnología, Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Buenos Aires, Argentina,Instituto de Nanobiotecnología (NANOBIOTEC), Universidad de Buenos Aires (UBA) - Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
| | - Nicolás Guiliani
- Departamento de Biología, Facultad de Ciencias, Universidad de Chile, Antofagasta, Chile
| | - Sabrina Marín
- Biotechnology Center, Universidad Católica del Norte, Antofagasta, Chile
| | - Cecilia Demergasso
- Biotechnology Center, Universidad Católica del Norte, Antofagasta, Chile,Nucleus for the Study of Cancer at a Basic, Applied, and Clinical Level, Universidad Católica del Norte, Antofagasta, Chile,*Correspondence: Cecilia Demergasso,
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12
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Tamayo-Belda M, Pulido-Reyes G, González-Pleiter M, Martín-Betancor K, Leganés F, Rosal R, Fernández-Piñas F. Identification and toxicity towards aquatic primary producers of the smallest fractions released from hydrolytic degradation of polycaprolactone microplastics. CHEMOSPHERE 2022; 303:134966. [PMID: 35588878 DOI: 10.1016/j.chemosphere.2022.134966] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2022] [Revised: 04/05/2022] [Accepted: 05/11/2022] [Indexed: 06/15/2023]
Abstract
Bioplastics are thought as a safe substitute of non-biodegradable polymers. However, once released in the environment, biodegradation may be very slow, and they also suffer abiotic fragmentation processes, which may give rise to different fractions of polymer sizes. We present novel data on abiotic hydrolytic degradation of polycaprolactone (PCL), tracking the presence of by-products during 132 days by combining different physicochemical techniques. During the study a considerable amount of two small size plastic fractions were found (up to ∼ 6 mg of PCL by-product/g of PCL beads after 132 days of degradation); and classified as submicron-plastics (sMPs) from 1 μm to 100 nm and nanoplastics (NPs, <100 nm) as well as oligomers. The potential toxicity of the smallest fractions, PCL by-products < 100 nm (PCL-NPs + PCL oligomers) and the PCL oligomers single fraction, was tested on two ecologically relevant aquatic primary producers: the heterocystous filamentous nitrogen-fixing cyanobacterium Anabaena sp. PCC 7120, and the unicellular cyanobacterium Synechococcus sp. PCC 7942. Upon exposure to both, single and combined fractions, Reactive Oxygen Species (ROS) overproduction, intracellular pH and metabolic activity alterations were observed in both organisms, whilst membrane potential and morphological damages were only observed upon PCL-NPs + PCL oligomers exposure. Notably both PCL by-products fractions inhibited nitrogen fixation in Anabaena, which may be clearly detrimental for the aquatic trophic chain. As conclusion, fragmentation of bioplastics may render a continuous production of secondary nanoplastics as well as oligomers that might be toxic to the surrounding biota; both PCL-NPs and PCL oligomers, but largely the nanoparticulate fraction, were harmful for the two aquatic primary producers. Efforts should be made to thoroughly understand the fragmentation of bioplastics and the toxicity of the smallest fractions resulting from that degradation.
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Affiliation(s)
- Miguel Tamayo-Belda
- Department of Biology, Faculty of Science, Universidad Autónoma de Madrid, E-28049, Madrid, Spain
| | - Gerardo Pulido-Reyes
- Department of Biology, Faculty of Science, Universidad Autónoma de Madrid, E-28049, Madrid, Spain
| | - Miguel González-Pleiter
- Department of Biology, Faculty of Science, Universidad Autónoma de Madrid, E-28049, Madrid, Spain
| | - Keila Martín-Betancor
- Department of Biology, Faculty of Science, Universidad Autónoma de Madrid, E-28049, Madrid, Spain
| | - Francisco Leganés
- Department of Biology, Faculty of Science, Universidad Autónoma de Madrid, E-28049, Madrid, Spain
| | - Roberto Rosal
- Department of Chemical Engineering, Universidad de Alcalá, E-28871, Alcalá de Henares, Madrid, Spain
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Li Y, Lin H, Gao P, Yang N, Xu R, Sun X, Li B, Xu F, Wang X, Song B, Sun W. Synergistic Impacts of Arsenic and Antimony Co-contamination on Diazotrophic Communities. MICROBIAL ECOLOGY 2022; 84:44-58. [PMID: 34398256 DOI: 10.1007/s00248-021-01824-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Accepted: 07/15/2021] [Indexed: 06/13/2023]
Abstract
Nitrogen (N) shortage poses a great challenge to the implementation of in situ bioremediation practices in mining-contaminated sites. Diazotrophs can fix atmospheric N2 into a bioavailable form to plants and microorganisms inhabiting adverse habitats. Increasing numbers of studies mainly focused on the diazotrophic communities in the agroecosystems, while those communities in mining areas are still not well understood. This study compared the variations of diazotrophic communities in composition and interactions in the mining areas with different extents of arsenic (As) and antimony (Sb) contamination. As and Sb co-contamination increased alpha diversities and the abundance of nifH encoding the dinitrogenase reductase, while inhibited the diazotrophic interactions and substantially changed the composition of communities. Based on the multiple lines of evidence (e.g., the enrichment analysis of diazotrophs, microbe-microbe network, and random forest regression), six diazotrophs (e.g., Sinorhizobium, Dechloromonas, Trichormus, Herbaspirillum, Desmonostoc, and Klebsiella) were identified as keystone taxa. Environment-microbe network and random forest prediction demonstrated that these keystone taxa were highly correlated with the As and Sb contamination fractions. All these results imply that the above-mentioned diazotrophs may be resistant to metal(loid)s.
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Affiliation(s)
- Yongbin Li
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, 808 Tianyuan Road, Guangzhou, 510650, Guangdong, China
| | - Hanzhi Lin
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, 808 Tianyuan Road, Guangzhou, 510650, Guangdong, China
| | - Pin Gao
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, 808 Tianyuan Road, Guangzhou, 510650, Guangdong, China
- College of Environmental Science and Engineering, Textile Pollution Controlling Engineering Center of Ministry of Environmental Protection, Donghua University, Shanghai, 201620, China
| | - Nie Yang
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, 808 Tianyuan Road, Guangzhou, 510650, Guangdong, China
| | - Rui Xu
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, 808 Tianyuan Road, Guangzhou, 510650, Guangdong, China
| | - Xiaoxu Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, 808 Tianyuan Road, Guangzhou, 510650, Guangdong, China
| | - Baoqin Li
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, 808 Tianyuan Road, Guangzhou, 510650, Guangdong, China
| | - Fuqing Xu
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, 808 Tianyuan Road, Guangzhou, 510650, Guangdong, China
| | - Xiaoyu Wang
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, 808 Tianyuan Road, Guangzhou, 510650, Guangdong, China
| | - Benru Song
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, 808 Tianyuan Road, Guangzhou, 510650, Guangdong, China
| | - Weimin Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, 808 Tianyuan Road, Guangzhou, 510650, Guangdong, China.
- School of Environment, Henan Normal University, Xinxiang, China.
- Key Laboratory for Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, China.
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Mao Q, Xie Z, Irshad S, Zhong Z, Liu T, Pei F, Gao B, Li L. Effect of arsenic accumulation on growth and antioxidant defense system of Chlorella thermophila SM01 and Leptolyngbya sp. XZMQ. ALGAL RES 2022. [DOI: 10.1016/j.algal.2022.102762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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15
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Pang M, Huang Z, Tang Y, Dai J, Jin G. Transcriptome analysis of the toxicity response of green macroalga Caulerpa lentillifera J. Agardh to high dissolved arsenite. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:38591-38605. [PMID: 35083695 DOI: 10.1007/s11356-021-18122-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Accepted: 12/11/2021] [Indexed: 06/14/2023]
Abstract
Arsenic (As) is a hazardous pollutant that negatively impacts the physiological functions of alga. So far, a detailed understanding of algal response to As stress is still lacking. In this study, a transcriptome analysis was performed to illustrate the toxicity response of Caulerpa lentillifera J. Agardh, an edible algae with rich nutrition, to arsenite [As(III)], a toxic form of As. Totally, 1913 differentially expressed genes (DEGs) were screened, of which 642 were up- and 1271 were downregulated in C. lentillifera under As(III) stress (30 mg·L-1) compared with control. As(III) stress promoted the growth of C. lentillifera at low concentration (0.1 mg·L-1) and inhibited the growth at high concentration (≥ 0.5 mg·L-1). Multiple DEGs involved in oxidoreductase activities were significantly affected by As(III), and several DEGs related to antioxidant enzyme activity were downregulated, resulting in suffering from oxidative stress in C. lentillifera. Results also showed that As(III) stress inhibited chlorophyll and carotenoid synthesis, destroyed the integrity of chloroplasts, and interfered with the absorption of light energy, thereby inhibiting photosynthesis in C. lentillifera. The highly enriched ABC transporter-related genes involved in the detoxification process were upregulated under As(III) stress, indicating their critical role in the resistance to As stress in C. lentillifera. The gene expressions for 10 selected DEGs were confirmed by qRT-PCR, showing the reliability of the data revealed by RNA sequencing. Our novel work illustrated the toxicity of C. lentillifera under As(III) stress at the molecular level, serving as a basis for future investigations on the prevention and treatment of such pollutants.
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Affiliation(s)
- Meixia Pang
- Postdoctoral Innovation Practice Base, Shenzhen Polytechnic, Shenzhen, 518055, China
- School of Applied Chemistry and Biological Technology, Shenzhen Polytechnic, Shenzhen, 518055, China
| | - Zhili Huang
- School of Applied Chemistry and Biological Technology, Shenzhen Polytechnic, Shenzhen, 518055, China
| | - Yongjun Tang
- School of Applied Chemistry and Biological Technology, Shenzhen Polytechnic, Shenzhen, 518055, China
| | - Jianguo Dai
- School of Applied Chemistry and Biological Technology, Shenzhen Polytechnic, Shenzhen, 518055, China
| | - Gang Jin
- School of Applied Chemistry and Biological Technology, Shenzhen Polytechnic, Shenzhen, 518055, China.
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Lee MC, Libatique MJH, Yeh HY, Chloe Lung WQ. Increasing arsenic accumulation as an implication of climate change: a case study using red algae. BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2022; 108:839-847. [PMID: 35362746 DOI: 10.1007/s00128-022-03498-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2021] [Accepted: 03/03/2022] [Indexed: 06/14/2023]
Abstract
Climate change due to an increasing concentration of carbon dioxide in the atmosphere is a global issue. It can impact aquatic environments by affecting water flow, pollutant transformation and migration, and other toxicant-related effects. We assessed the interactive effects of temperature warming and pH changes on variations in accumulation of total arsenic (AsT) in the red alga Sarcodia suae at different levels of arsenite (AsIII). Result showed that AsT variations in the alga were moderated by significant joint effects of warming temperature and/or increasing pH levels and their interactions with increasing AsIII concentrations. Our study suggests possible deleterious impacts on macroalgal populations due to toxicological effects associated with prevailing environmental conditions. Therefore, improved pollution management, climate change adaptation, and mitigation strategies are needed to deal with current environmental issues and As aggravation.
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Affiliation(s)
- Meng-Chou Lee
- Department of Aquaculture, National Taiwan Ocean University, 20224, Keelung City, Taiwan.
- Center of Excellence for Ocean Engineering, National Taiwan Ocean University, 20224, Keelung City, Taiwan.
- Center of Excellence for the Oceans, National Taiwan Ocean University, 20224, Keelung City, Taiwan.
| | - Mary Joy Halog Libatique
- Department of Aquaculture, National Taiwan Ocean University, 20224, Keelung City, Taiwan
- Provincial Institute of Fisheries, Isabela State University-Roxas Campus, 3320, Roxas, Isabela, Philippines
| | - Han-Yang Yeh
- Department of Aquaculture, National Taiwan Ocean University, 20224, Keelung City, Taiwan
| | - Wei Qing Chloe Lung
- Department of Aquaculture, National Taiwan Ocean University, 20224, Keelung City, Taiwan
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Cyclophilin anaCyp40 regulates photosystem assembly and phycobilisome association in a cyanobacterium. Nat Commun 2022; 13:1690. [PMID: 35354803 PMCID: PMC8967839 DOI: 10.1038/s41467-022-29211-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2020] [Accepted: 02/28/2022] [Indexed: 11/08/2022] Open
Abstract
Cyclophilins, or immunophilins, are proteins found in many organisms including bacteria, plants and humans. Most of them display peptidyl-prolyl cis-trans isomerase activity, and play roles as chaperones or in signal transduction. Here, we show that cyclophilin anaCyp40 from the cyanobacterium Anabaena sp. PCC 7120 is enzymatically active, and seems to be involved in general stress responses and in assembly of photosynthetic complexes. The protein is associated with the thylakoid membrane and interacts with phycobilisome and photosystem components. Knockdown of anacyp40 leads to growth defects under high-salt and high-light conditions, and reduced energy transfer from phycobilisomes to photosystems. Elucidation of the anaCyp40 crystal structure at 1.2-Å resolution reveals an N-terminal helical domain with similarity to PsbQ components of plant photosystem II, and a C-terminal cyclophilin domain with a substrate-binding site. The anaCyp40 structure is distinct from that of other multi-domain cyclophilins (such as Arabidopsis thaliana Cyp38), and presents features that are absent in single-domain cyclophilins.
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18
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Chanu NK, Mandal MK, Srivastava A, Chaurasia N. Proteomics analysis reveals several metabolic alterations in cyanobacterium Anabaena sp. NC-K1 in response to alpha-cypermethrin exposure. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:19762-19777. [PMID: 34718975 DOI: 10.1007/s11356-021-16611-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2021] [Accepted: 09/14/2021] [Indexed: 06/13/2023]
Abstract
In the current study, the effect of the EC50 and LC90 concentrations of pyrethroid insecticide alpha-cypermethrin to cyanobacteria Anabaena sp. NC-K1 was investigated at different time exposures (1st day, 4th day and 7th day) with reference to growth, photosynthetic pigments, oxidative damage and antioxidant defence system. Superoxide dismutase (1.38-fold), peroxidase (5.04) and proline content (2.27-fold) were enhanced compared to the control. After performing 2D gel electrophoresis at 1st day EC50 exposure, where appropriate differences in the biochemical and physiological parameters were observed, 22 differentially accumulated proteins (20 upregulated and 2 downregulated) were selected for mass spectrometry. Out of 42 proteins identified, 20 upregulated protein spots were classified into twelve categories according to their metabolic functions. Proteins related to photosynthesis (phycobilisome rod-core linker polypeptide, rubisco), stress responses (Hsp70, Hsp40, catalase family peroxidase), translation (elongation factor Tu) and amino acid biosynthesis and metabolism (3-phosphoshikimate 1-carboxyvinyl transferase) were significantly upregulated. Additionally, proteins involved in transcription and DNA repair (Snf-2 histone linker phd ring helicase, RNA polymerase sigma factor RpoD and Holliday junction ATP-dependent DNA helicase RuvA) were considerably upregulated. Upregulation of these proteins against pesticide stress presumably maintained the photosynthesis, energy metabolism, carbohydrate metabolism, transport and signalling proteins, transcription, translation and DNA repair. Additionally, these proteins might involve in sufficient detoxification of ROS and play a crucial role in damage removal and repair of oxidized proteins, lipids and nucleic acids. Taken together, Anabaena sp. NC-K1 responded towards alpha-cypermethrin stress via modulating its proteome to maintain its cellular metabolism and homeostasis.
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Affiliation(s)
- Ng Kunjarani Chanu
- Environmental Biotechnology Laboratory, Department of Biotechnology and Bioinformatics, North-Eastern Hill University, Shillong, Meghalaya, 793022, India
| | - Madan Kumar Mandal
- Environmental Biotechnology Laboratory, Department of Biotechnology and Bioinformatics, North-Eastern Hill University, Shillong, Meghalaya, 793022, India
| | - Akanksha Srivastava
- Department of Botany, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Neha Chaurasia
- Environmental Biotechnology Laboratory, Department of Biotechnology and Bioinformatics, North-Eastern Hill University, Shillong, Meghalaya, 793022, India.
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Chakdar H, Thapa S, Srivastava A, Shukla P. Genomic and proteomic insights into the heavy metal bioremediation by cyanobacteria. JOURNAL OF HAZARDOUS MATERIALS 2022; 424:127609. [PMID: 34772552 DOI: 10.1016/j.jhazmat.2021.127609] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Revised: 10/16/2021] [Accepted: 10/24/2021] [Indexed: 06/13/2023]
Abstract
Heavy metals (HMs) pose a global ecological threat due to their toxic effects on aquatic and terrestrial life. Effective remediation of HMs from the environment can help to restore soil's fertility and ecological vigor, one of the key Sustainable Development Goals (SDG) set by the United Nations. The cyanobacteria have emerged as a potential option for bioremediation of HMs due to their unique adaptations and robust metabolic machineries. Generally, cyanobacteria deploy multifarious mechanisms such as biosorption, bioaccumulation, activation of metal transporters, biotransformation and induction of detoxifying enzymes to sequester and minimize the toxic effects of heavy metals. Therefore, understanding the physiological responses and regulation of adaptation mechanisms at molecular level is necessary to unravel the candidate genes and proteins which can be manipulated to improve the bioremediation efficiency of cyanobacteria. Chaperons, cellular metabolites (extracellular polymers, biosurfactants), transcriptional regulators, metal transporters, phytochelatins and metallothioneins are some of the potential targets for strain engineering. In the present review, we have discussed the potential of cyanobacteria for HM bioremediation and provided a deeper insight into their genomic and proteomic regulation of various tolerance mechanisms. These approaches might pave new possibilities of implementing genetic engineering strategies for improving bioremediation efficiency with a future perspective.
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Affiliation(s)
- Hillol Chakdar
- Microbial Technology Unit II, ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Mau 275103, Uttar Pradesh, India
| | - Shobit Thapa
- Microbial Technology Unit II, ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Mau 275103, Uttar Pradesh, India
| | - Amit Srivastava
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, ID 47907-2048, United States
| | - Pratyoosh Shukla
- School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India; Enzyme Technology and Protein Bioinformatics Laboratory, Department of Microbiology, Maharshi Dayanand University, Rohtak 124001, Haryana, India.
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Arsenic Accumulation and Biotransformation Affected by Nutrients (N and P) in Common Blooming-Forming Microcystis wesenbergii (Komárek) Komárek ex Komárek (Cyanobacteria). WATER 2022. [DOI: 10.3390/w14020245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Arsenic accumulation and biotransformation in algae was mostly carried out in a medium that contained far higher nutrient concentrations than that in natural freshwaters. The obtained results might have limited environmental validity and result in a failure to describe authentic arsenic biogeochemical cycles in natural freshwater systems. To validate the assumption, arsenic accumulation, and biotransformation in common bloom forming Microcystis wesenbergii was performed under a high nutrient concentration in BG11 medium (N = 250 mg/L, P = 7.13 mg/L), and adjusted low nutrients that mimicked values in natural freshwaters (N = 1.5 mg/L, P = 0.3 mg/L). The growth rate and maximum M. wesenbergii cell density were much lower in the high nutrient set, but more inhibition was shown with increasing ambient iAs(V) concentrations both in the high and low nutrient sets. The proportion of intracellular contents in total arsenicals decreased with increasing iAs(V) concentrations in both high and low nutrient sets but increased with incubation time. Intracellular iAs(III) was not found in the high nutrient set, while it formed high concentrations that could be comparable to that of an extracellular level in the low nutrient set. M. wesenbergii could methylate arsenic, and a higher proportion of organoarsenicals was formed in the low nutrient set. Lower intracellular MMA(V) and DMA(V) concentrations were found in the high nutrient set; contrarily, they presented a higher concentration that could be comparable to the extracellular ones in the low nutrient set. The results demonstrated that different nutrient regimes could affect arsenic accumulation and biotransformation in M. wesenbergii, and low nutrient concentrations could inhibit the excretion of iAs(III), MMA(V) and DMA(V) out of cells. Further investigations should be based on natural freshwater systems to obtain an authentic arsenic accumulation and biotransformation in cyanobacteria.
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Wang Y, Gong X, Huang D, Zhang J. Increasing oxytetracycline and enrofloxacin concentrations on the algal growth and sewage purification performance of an algal-bacterial consortia system. CHEMOSPHERE 2022; 286:131917. [PMID: 34426270 DOI: 10.1016/j.chemosphere.2021.131917] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 08/02/2021] [Accepted: 08/15/2021] [Indexed: 06/13/2023]
Abstract
Oxytetracycline (OTC) and enrofloxacin (EFX) pollution in surface water are very common. Using the algal-bacterial consortia system to remove antibiotics remains to be further studied. In this study, the algal growth and sewage purification performance were studied in an algal-bacterial consortia system with different concentrations of antibiotics. The enzyme activity, malondialdehyde content, chlorophyll-a content, extracellular polysaccharide, and protein content of algae were also tested. It was found that the algal growth was promoted by low-dose antibiotics, 21.83% and 22.11% promotion at 0.1 mg L-1 OTC and EFX, respectively. The nutrients and antibiotics removals of the low-dose groups (OTC <5 mg L-1, EFX <1 mg L-1) were not affected significantly. More than 70% of total organic carbon and total phosphorus, and 97.84-99.76% OTC, 42.68-42.90% EFX were removed in the low-dose groups. However, the algal growth was inhibited, and the nutrients removals performance also declined in the high-concentration groups (10 mg L-1 OTC, 5 mg L-1 EFX). The superoxide dismutase and catalase activity, and malondialdehyde content increased significantly (P < 0.05), indicating the increased activity of reactive oxygen species. In addition, the decreased chlorophyll-a content, thylakoid membrane deformation, starch granules accumulation, and plasmolysis showed that the algal physiological functions were affected. These results showed that the algal-bacterial consortia system was more suitable to treat low-concentration antibiotics and provided basic parameters for the consortia application.
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Affiliation(s)
- Yu Wang
- Department of Environmental Science and Engineering, Fudan University, Shanghai, 200433, PR China
| | - Xinye Gong
- Department of Environmental Science and Engineering, Fudan University, Shanghai, 200433, PR China
| | - Deying Huang
- Department of Chemistry, Fudan University, Shanghai, 200433, PR China.
| | - Jibiao Zhang
- Department of Environmental Science and Engineering, Fudan University, Shanghai, 200433, PR China.
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22
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Li Y, Lin H, Gao P, Yang N, Xu R, Sun X, Li B, Xu F, Wang X, Song B, Sun W. Variation in the diazotrophic community in a vertical soil profile contaminated with antimony and arsenic. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 291:118248. [PMID: 34592324 DOI: 10.1016/j.envpol.2021.118248] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Revised: 09/22/2021] [Accepted: 09/26/2021] [Indexed: 06/13/2023]
Abstract
A nitrogen (N) deficiency will usually hinder bioremediation efforts in mining-derived habitats such as occurring in mining regions. Diazotrophs can provide N to support the growth of plants and microorganisms in these environments. However, diazotrophic communities in mining areas have been not studied frequently and are more poorly understood than those in other environments, such as in agricultural soils or in the presence of legumes. The current study compares the differences in depth-resolved diazotrophic community compositions and interactions in two contrasting sites (to depths of 2 m), including a highly contaminated and a moderately contaminated site. Antimony (Sb) and arsenic (As) co-contamination induced a loosely connected biotic interaction, and a selection of deep soils by diazotrophic communities. Multiple lines of evidence, including the enrichment of diazotrophic taxa in the highly contaminated sites, microbe-microbe interactions, environment-microbe interactions, and a machine learning approach (random forests regression), demonstrated that Rhizobium was the keystone taxon within the vertical profile of contaminated soil and was resistant to the Sb and As contaminant fractions. All of these observations suggest that one diazotroph, Rhizobium, may play an important role in N fixation in the examined contaminated sites.
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Affiliation(s)
- Yongbin Li
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou, 510650, China
| | - Hanzhi Lin
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou, 510650, China
| | - Pin Gao
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou, 510650, China; College of Environmental Science and Engineering, Textile Pollution Controlling Engineering Center of Ministry of Environmental Protection, Donghua University, Shanghai, 201620, China
| | - Nie Yang
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou, 510650, China
| | - Rui Xu
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou, 510650, China
| | - Xiaoxu Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou, 510650, China
| | - Baoqin Li
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou, 510650, China
| | - Fuqing Xu
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou, 510650, China
| | - Xiaoyu Wang
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou, 510650, China
| | - Benru Song
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou, 510650, China
| | - Weimin Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou, 510650, China; School of Environment, Henan Normal University, China; Key Laboratory for Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Henan Normal University, China.
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Rai R, Singh S, Rai KK, Raj A, Sriwastaw S, Rai LC. Regulation of antioxidant defense and glyoxalase systems in cyanobacteria. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 168:353-372. [PMID: 34700048 DOI: 10.1016/j.plaphy.2021.09.037] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Revised: 09/09/2021] [Accepted: 09/28/2021] [Indexed: 05/19/2023]
Abstract
Oxidative stress is common consequence of abiotic stress in plants as well as cyanobacteria caused by generation of reactive oxygen species (ROS), an inevitable product of respiration and photosynthetic electron transport. ROS act as signalling molecule at low concentration however, when its production exceeds the endurance capacity of antioxidative defence system, the organisms suffer oxidative stress. A highly toxic metabolite, methylglyoxal (MG) is also produced in cyanobacteria in response to various abiotic stresses which consequently augment the ensuing oxidative damage. Taking recourse to the common lineage of eukaryotic plants and cyanobacteria, it would be worthwhile to explore the regulatory role of glyoxalase system and antioxidative defense mechanism in combating abiotic stress in cyanobacteria. This review provides comprehensive information on the complete glyoxalase system (GlyI, GlyII and GlyIII) in cyanobacteria. Furthermore, it elucidates the recent understanding regarding the production of ROS and MG, noteworthy link between intracellular MG and ROS and its detoxification via synchronization of antioxidants (enzymatic and non-enzymatic) and glyoxalase systems using glutathione (GSH) as common co-factor.
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Affiliation(s)
- Ruchi Rai
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Shilpi Singh
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Krishna Kumar Rai
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Alka Raj
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Sonam Sriwastaw
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
| | - L C Rai
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India.
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24
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Romeu MJ, Domínguez-Pérez D, Almeida D, Morais J, Araújo MJ, Osório H, Campos A, Vasconcelos V, Mergulhão FJ. Quantitative proteomic analysis of marine biofilms formed by filamentous cyanobacterium. ENVIRONMENTAL RESEARCH 2021; 201:111566. [PMID: 34181917 DOI: 10.1016/j.envres.2021.111566] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Revised: 06/14/2021] [Accepted: 06/18/2021] [Indexed: 06/13/2023]
Abstract
Cyanobacterial molecular biology can identify pathways that affect the adhesion and settlement of biofouling organisms and, consequently, obtain novel antifouling strategies for marine applications. Proteomic analyses can provide an essential understanding of how cyanobacteria adapt to different environmental settings. However, only a few qualitative studies have been performed in some cyanobacterial strains. Considering the limited knowledge about protein expression in cyanobacteria in different growing conditions, a quantitative proteomic analysis by LC-MS/MS of biofilm cells from a filamentous strain was performed. Biofilms were also analysed through standard methodologies for following cyanobacterial biofilm development. Biofilms were formed on glass and perspex at two relevant hydrodynamic conditions for marine environments (average shear rates of 4 s-1 and 40 s-1). Biofilm development was higher at 4 s-1 and no significant differences were found between surfaces. Proteomic analysis identified 546 proteins and 41 were differentially expressed. Differences in protein expression were more noticeable between biofilms formed on glass and perspex at 4 s-1. When comparing biofilms formed on different surfaces, results suggest that biofilm development may be related to the expression of several proteins like a beta-propeller domain-containing protein, chaperone DnaK, SLH domain-containing proteins, an OMF family outer membrane protein, and/or additional uncharacterized proteins. Regarding the hydrodynamic effect, biofilm development can be related to SOD enzyme expression, to proteins related to photosynthetic processes and to a set of uncharacterized proteins with calcium binding domains, disordered proteins, and others involved in electron transfer activity. Studies that combine distinct approaches are essential for finding new targets for antibiofilm agents. The characterisation performed in this work provides new insights into how shear rate and surface affect cyanobacterial biofilm development and how cyanobacteria adapt to these different environmental settings from a macroscopic standpoint to a proteomics context.
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Affiliation(s)
- M J Romeu
- LEPABE, Laboratory for Process Engineering, Environment, Biotechnology and Energy, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | - D Domínguez-Pérez
- CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208, Matosinhos, Portugal
| | - D Almeida
- CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208, Matosinhos, Portugal
| | - J Morais
- CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208, Matosinhos, Portugal
| | - M J Araújo
- CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208, Matosinhos, Portugal
| | - H Osório
- i3S -Instituto de Investigação e Inovação em Saúde, Universidade do Porto, 4200-135, Porto, Portugal; Institute of Molecular Pathology and Immunology of the University of Porto, IPATIMUP, Rua Júlio Amaral de Carvalho 45, 4200-135, Porto, Portugal; Faculty of Medicine, University of Porto, Al. Prof. Hernâni Monteiro, 4200-319, Porto, Portugal
| | - A Campos
- CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208, Matosinhos, Portugal
| | - V Vasconcelos
- CIIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208, Matosinhos, Portugal; Department of Biology, Faculty of Sciences, University of Porto, Rua do Campo Alegre, 4169-007, Porto, Portugal
| | - F J Mergulhão
- LEPABE, Laboratory for Process Engineering, Environment, Biotechnology and Energy, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal.
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Physiological and Proteomic Studies of the Cyanobacterium Anabaena sp. Acclimated to Desiccation Stress. Curr Microbiol 2021; 78:2429-2439. [PMID: 33983480 DOI: 10.1007/s00284-021-02504-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2020] [Accepted: 04/21/2021] [Indexed: 10/21/2022]
Abstract
Agricultural productivity is threatened by increasing incidence of drought and the drought tolerant cyanobacteria offer a better solution in the restoration of soil fertility and productivity. The present study describes the comparative physiological response of the cyanobacterium Anabaena sp. acclimated and un-acclimated to desiccation stress induced by polyethylene glycol (10% PEG). While, the acclimated cyanobacterial cells grew luxuriantly with optimal chlorophyll content, photosynthetic activities and nitrogen fixation, the un-acclimated cells exhibited reduced growth rate, chlorophyll content, photosynthetic activities and nitrogen fixation. Distinct differences in the accumulation of lipid peroxidation products, proline and activity of superoxide dismutase were observed under identical growth conditions in the acclimated and un-acclimated cells. Desiccation-acclimated and un-acclimated cyanobacteria showed significant alterations in the abundance of important proteins in the proteome. Two-dimensional gel electrophoresis followed by MALDI-TOF-MS/MS analysis identified twelve proteins. The acclimated cells showed the up regulation of proteins such as Rubisco, fructose-bis-phosphate aldolase, fructose 1-6 bisphosphatase, phosphoglycerate dehydrogenase and elongation factors Tu and Ts as compared to un-acclimated cells. Therefore, the ability to maintain photosynthesis, antioxidants and increased accumulation of proteins related to energy metabolism helped the acclimated cyanobacterium Anabaena sp. to grow optimally under desiccation stress conditions.
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Patel A, Tiwari S, Prasad SM. Effect of Time Interval on Arsenic Toxicity to Paddy Field Cyanobacteria as Evident by Nitrogen Metabolism, Biochemical Constituent, and Exopolysaccharide Content. Biol Trace Elem Res 2021; 199:2031-2046. [PMID: 32767030 DOI: 10.1007/s12011-020-02289-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Accepted: 07/13/2020] [Indexed: 10/23/2022]
Abstract
Arsenic poisoning in aquatic ecosystem is a global concern that obstructs the productivity of agricultural lands (paddy fields) by targeting the growth of cyanobacteria. The cyanobacteria also tolerate and accumulate elevated concentration of arsenic (As) inside the cell and excrete out from cells in less toxic forms after the successive time interval. Thus to validate this, the study was carried out at two different time intervals, i.e., 48 h and 96 h. Two redox forms of As arsenate (AsV) and arsenite (AsIII) at different concentrations (50, 100, and 150 mM AsV; 50, 100, and 150 μM AsIII) caused substantial reduction in growth, pigments (Chl a/Car and phycobiliproteins: phycocyanin, allophycocyanin, and phycoerythrin), inorganic nitrogen ( nitrate (NO3-) and nitrite (NO2-)) uptake, activity of enzymes (NR, NiR, GS, and GOGAT) of nitrogen metabolism, biochemical constituents (protein, carbohydrate, and exopolysaccharide (EPS) contents of Nostoc muscorum, and Anabaena sp. PCC7120. The tested doses of AsV and AsIII after 48 h of exposure exhibited adverse impact on these parameters, but after 96 h with lower doses of AsV (50 mM and 100 mM) and AsIII (50 μM and 100 μM), significant recovery was recorded. Contrary to this, at higher dose of AsV (150 mM) and AsIII (150 μM), the adverse impact was further aggravated with increasing time exposure. Contrary to the activity of NR, NiR, GS, and GOGAT, GDH activity (alternative NH3+ assimilating enzyme) was found to increase, and after 96 h, the activity showed declining trend but still higher than the control. The biochemical constituent EPS (first protective barrier) under scanning electron microscope showed more accumulation of dry adsorbent in the case of AsIII stress hence displayed more toxic nature of AsIII than AsV. The study concludes that with increasing time exposure, the recovery in growth and related parameters mainly at lower doses of AsV and AsIII points toward adaptability of cyanobacteria which was more pronounced in Nostoc muscorum.
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Affiliation(s)
- Anuradha Patel
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of Allahabad, Prayagraj, 211002, India
| | - Sanjesh Tiwari
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of Allahabad, Prayagraj, 211002, India
| | - Sheo Mohan Prasad
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of Allahabad, Prayagraj, 211002, India.
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Hussain MM, Wang J, Bibi I, Shahid M, Niazi NK, Iqbal J, Mian IA, Shaheen SM, Bashir S, Shah NS, Hina K, Rinklebe J. Arsenic speciation and biotransformation pathways in the aquatic ecosystem: The significance of algae. JOURNAL OF HAZARDOUS MATERIALS 2021; 403:124027. [PMID: 33265048 DOI: 10.1016/j.jhazmat.2020.124027] [Citation(s) in RCA: 76] [Impact Index Per Article: 25.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Revised: 08/29/2020] [Accepted: 09/15/2020] [Indexed: 06/12/2023]
Abstract
The contamination of aquatic systems with arsenic (As) is considered to be an internationally-important health and environmental issue, affecting over 115 countries globally. Arsenic contamination of aquatic ecosystems is a global threat as it can enter the food chain from As-rich water and cause harmful impacts on the humans and other living organisms. Although different factors (e.g., pH, redox potential, iron/manganese oxides, and microbes) control As biogeochemical cycling and speciation in water systems, the significance of algal species in biotransformation of As is poorly understood. The overarching attribute of this review is to briefly elaborate various As sources and its distribution in water bodies and factors affecting As biogeochemical behavior in aqueous ecosystems. This review elucidates the intriguing role of algae in biotransformation/volatilization of As in water bodies under environmentally-relevant conditions. Also, we critically delineate As sorption, uptake, oxidation and reduction pathways of As by algae and their possible role in bioremediation of As-contaminated water (e.g., drinking water, wastewater). The current review provides the updated and useful framework for government and water treatment agencies to implement algae in As remediation programs globally.
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Affiliation(s)
- Muhammad Mahroz Hussain
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan
| | - Jianxu Wang
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, Guiyang 550082, PR China; University of Wuppertal, School of Architecture and Civil Engineering, Institute of Foundation Engineering, Water, and Waste-Management, Laboratory of Soil- and Groundwater-Management, Pauluskirchstraße 7, Wuppertal 42285, Germany; CAS Center for Excellence in Quaternary Science and Global Change, Xi'an 710061, PR China
| | - Irshad Bibi
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan.
| | - Muhammad Shahid
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, Vehari 61100, Pakistan
| | - Nabeel Khan Niazi
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan; School of Civil Engineering and Surveying, University of Southern Queensland, Toowoomba 4350, Queensland, Australia.
| | - Jibran Iqbal
- College of Natural and Health Sciences, Zayed University, Abu Dhabi 144534, United Arab Emirates
| | - Ishaq Ahmad Mian
- Department of Soil and Environmental Sciences, The University of Agriculture Peshawar, Pakistan
| | - Sabry M Shaheen
- University of Wuppertal, School of Architecture and Civil Engineering, Institute of Foundation Engineering, Water, and Waste-Management, Laboratory of Soil- and Groundwater-Management, Pauluskirchstraße 7, Wuppertal 42285, Germany; King Abdulaziz University, Faculty of Meteorology, Environment, and Arid Land Agriculture, Department of Arid Land Agriculture, Jeddah 21589, Kingdom of Saudi Arabia; Department of Soil and Water Sciences, Faculty of Agriculture, University of Kafrelsheikh, Kafr El-Sheikh 33516, Egypt
| | - Safdar Bashir
- University of Agriculture Faisalabad, Sub-campus Depalpur, Okara 56130, Pakistan
| | - Noor Samad Shah
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, Vehari 61100, Pakistan
| | - Kiran Hina
- Department of Environmental Sciences, University of Gujrat, Gujrat, Pakistan
| | - Jörg Rinklebe
- University of Wuppertal, School of Architecture and Civil Engineering, Institute of Foundation Engineering, Water, and Waste-Management, Laboratory of Soil- and Groundwater-Management, Pauluskirchstraße 7, Wuppertal 42285, Germany; Department of Environment, Energy and Geoinformatics, Sejong University, Seoul 05006, South Korea
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28
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Adhikari S, Adhikari A, Ghosh S, Roy D, Azahar I, Basuli D, Hossain Z. Assessment of ZnO-NPs toxicity in maize: An integrative microRNAomic approach. CHEMOSPHERE 2020; 249:126197. [PMID: 32087455 DOI: 10.1016/j.chemosphere.2020.126197] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2019] [Revised: 02/10/2020] [Accepted: 02/11/2020] [Indexed: 06/10/2023]
Abstract
Rapid expansion of nanotechnology and indiscriminate discharge of metal oxide nanoparticles (NPs) into the environment pose a serious hazard to the ecological receptors including plants. To better understand the role of miRNAs in ZnO-NPs stress adaptation, two small RNA libraries were prepared from control and ZnO-NPs (800 ppm, <50 nm particle size) stressed maize leaves. Meager performance of ZnO-NPs treated seedlings was associated with elevated tissue zinc accumulation, enhanced ROS generation, loss of root cell viability, increased foliar MDA content, decrease in chlorophyll and carotenoids contents. Deep sequencing identified 3 (2 known and 1 novel) up- and 77 (73 known and 4 novel) down-regulated miRNAs from ZnO-NPs challenged leaves. GO analysis reveals that potential targets of ZnO-NPs responsive miRNAs regulate diverse biological processes viz. plant growth and development (miR159f-3p, zma_18), ROS homeostasis (miR156b, miR166l), heavy metal transport and detoxification (miR444a, miR167c-3p), photosynthesis (miR171b) etc. Up-regulation of SCARECROW 6 in ZnO-NPs treated leaves might be responsible for suppression of chlorophyll biosynthesis leading to yellowing of leaves. miR156b.1 mediated up-regulation of CALLOSE SYNTHASE also does not give much protection against ZnO-NPs treatment. Taken together, the findings shed light on the miRNA-guided stress regulatory networks involved in plant adaptive responses to ZnO-NPs stress.
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Affiliation(s)
- Sinchan Adhikari
- Plant Stress and Molecular Biology Laboratory, Department of Botany, University of Kalyani, Kalyani, 741235, West Bengal, India
| | - Ayan Adhikari
- Plant Stress and Molecular Biology Laboratory, Department of Botany, University of Kalyani, Kalyani, 741235, West Bengal, India
| | - Supriya Ghosh
- Plant Stress and Molecular Biology Laboratory, Department of Botany, University of Kalyani, Kalyani, 741235, West Bengal, India
| | - Doyel Roy
- Plant Stress and Molecular Biology Laboratory, Department of Botany, University of Kalyani, Kalyani, 741235, West Bengal, India
| | - Ikbal Azahar
- Plant Stress and Molecular Biology Laboratory, Department of Botany, University of Kalyani, Kalyani, 741235, West Bengal, India
| | - Debapriya Basuli
- Plant Stress and Molecular Biology Laboratory, Department of Botany, University of Kalyani, Kalyani, 741235, West Bengal, India
| | - Zahed Hossain
- Plant Stress and Molecular Biology Laboratory, Department of Botany, University of Kalyani, Kalyani, 741235, West Bengal, India.
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Libatique MJH, Lee MC, Yeh HY, Jhang FJ. Total and inorganic arsenic biosorption by Sarcodia suiae (Rhodophyta), as affected by controlled environmental conditions. CHEMOSPHERE 2020; 248:126084. [PMID: 32059333 DOI: 10.1016/j.chemosphere.2020.126084] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Revised: 01/21/2020] [Accepted: 01/31/2020] [Indexed: 06/10/2023]
Abstract
Temperature, light intensity (LI), adsorbent source and concentrations are key external factors affecting algal metabolism and thus metal-accumulation mechanisms. In this study, the alga Sarcodia suiae was exposed individually to a range of temperature (15, 20, and 25 °C), and LI (30, 55, and 80 μmol photons m-2 s-1) at initial arsenate [As(V)] concentration (iconc: 0, 62.5, 125, 250, and 500 μg L-1) conditions, to investigate the variations of total arsenic (TAs) and inorganic arsenic (iAs) accumulation mechanisms in the algal body. Temperature significantly affected TAs and arsenite [As(III)] production and maximum absorption were obtained at 15 °C, which was significantly stimulated by increasing iconc. However, the temperature did not affect As(V) production. LI had no significant effect on TAs or iAs production, although maximum absorption was estimated in 80 μmol photons m-2 s-1. The iAs component of TAs was much greater in the temperature experiment particularly under 250-500 μg L-1iconc than in the LI experiment, is witnessed. Overall, temperature and iconc strongly affected As accumulation. The predominant iAs produced was As(III), regardless of temperature or LI, suggesting that the alga favored As(III) biosorption. Also, visible effects on the morphology of this alga were adverse with increased concentration and environmental factors did affect the difference somewhat. Our results contribute to improving our understanding of the effects of the tested factors on As cycling, which is necessary for maximizing biosorption of algae if utilized for bioremediation studies as well as in the wastewater treatment implementation approach in the environment.
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Affiliation(s)
- Mary Joy Halog Libatique
- Department of Aquaculture, National Taiwan Ocean University, Keelung City, 20224, Taiwan; Provincial Institute of Fisheries, Isabela State University Roxas, Isabela, 3320, Philippines.
| | - Meng-Chou Lee
- Department of Aquaculture, National Taiwan Ocean University, Keelung City, 20224, Taiwan; Center of Excellence for Ocean Engineering, National Taiwan Ocean University, Keelung City, 20224, Taiwan; Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung City, 20224, Taiwan
| | - Han-Yang Yeh
- Department of Aquaculture, National Taiwan Ocean University, Keelung City, 20224, Taiwan
| | - Fu-Jie Jhang
- Department of Aquaculture, National Taiwan Ocean University, Keelung City, 20224, Taiwan
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30
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Cai H, Liang J, Ning XA, Lai X, Li Y. Algal toxicity induced by effluents from textile-dyeing wastewater treatment plants. J Environ Sci (China) 2020; 91:199-208. [PMID: 32172968 DOI: 10.1016/j.jes.2020.01.004] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2019] [Revised: 01/13/2020] [Accepted: 01/14/2020] [Indexed: 06/10/2023]
Abstract
This research aimed to evaluate the alga Scenedesmus obliquus toxicity induced by textile-dyeing effluents (TDE). The toxicity indicator of TDE in alga at the physiological (algal growth), biochemical (chlorophyll-a (Chl-a) synthesis and superoxide dismutase (SOD) activity) and structural (cell membrane integrity) level were investigated. Then we further study the relationship among toxicity indicators at physiological and biochemical level, and supplemented by research on algal biomacromolecules. According to the analysis of various endpoints of the alga, the general sensitivity sequence of toxicity endpoints of Scenedesmus obliquus was: SOD activity > Chl-a synthesis > algal growth. The stimulation rate of SOD activity increased from day 3 (57.25%~83.02%) to day 6 (57.25%~103.81%), and then decreased on day 15 (-4.23%~-32.96%), which indicated that the antioxidant balance system of the algal cells was destroyed. The rate of Chl-a synthesis inhibition increased gradually, reaching 19.70%~79.39% on day 15, while the rate of growth inhibition increased from day 3 (-12.90%~10.16%) to day 15 (-21.27%~72.46%). Moreover, the algal growth inhibition rate was positively correlated with the inhibition rate of SOD activity or Chl-a synthesis, with the correlation coefficients were 0.6713 and 0.5217, respectively. Algal cells would be stimulating to produce excessive reactive oxygen species, which would cause peroxidation in the cells, thereby destroying chloroplasts, inhibiting chlorophyll synthesis and reducing photosynthesis. With increasing exposure time, irreversible damage to algae can lead to death. This study is expected to enhance our understanding of the ecological risks through algal tests caused by TDE.
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Affiliation(s)
- Hualing Cai
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China
| | - Jieying Liang
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China; School of Chemical Engineering, The University of New South Wales, Sydney, NSW 2052, Australia
| | - Xun-An Ning
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China; Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou 510006, China.
| | - Xiaojun Lai
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China
| | - Yang Li
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China
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Chatterjee A, Singh S, Rai R, Rai S, Rai L. Functional Characterization of Alr0765, A Hypothetical Protein from Anabaena PCC 7120 Involved in Cellular Energy Status Sensing, Iron Acquisition and Abiotic Stress Management in E. coli Using Molecular, Biochemical and Computational Approaches. Curr Genomics 2020; 21:295-310. [PMID: 33071622 PMCID: PMC7521041 DOI: 10.2174/1389202921999200424181239] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Revised: 03/27/2020] [Accepted: 03/30/2020] [Indexed: 12/03/2022] Open
Abstract
BACKGROUND Cyanobacteria are excellent model to understand the basic metabolic processes taking place in response to abiotic stress. The present study involves the characterization of a hypothetical protein Alr0765 of Anabaena PCC7120 comprising the CBS-CP12 domain and deciphering its role in abiotic stress tolerance. METHODS Molecular cloning, heterologous expression and protein purification using affinity chromatography were performed to obtain native purified protein Alr0765. The energy sensing property of Alr0765 was inferred from its binding affinity with different ligand molecules as analyzed by FTIR and TNP-ATP binding assay. AAS and real time-PCR were applied to evaluate the iron acquisition property and cyclic voltammetry was employed to check the redox sensitivity of the target protein. Transcript levels under different abiotic stresses, as well as spot assay, CFU count, ROS level and cellular H2O2 level, were used to show the potential role of Alr0765 in abiotic stress tolerance. In-silico analysis of Alr0765 included molecular function probability analysis, multiple sequence analysis, protein domain and motif finding, secondary structure analysis, protein-ligand interaction, homologous modeling, model refinement and verification and molecular docking was performed with COFACTOR, PROMALS-3D, InterProScan, MEME, TheaDomEx, COACH, Swiss modeller, Modrefiner, PROCHECK, ERRAT, MolProbity, ProSA, TM-align, and Discovery studio, respectively. RESULTS Transcript levels of alr0765 significantly increased by 20, 13, 15, 14.8, 12, 7, 6 and 2.5 fold when Anabaena PCC7120 treated with LC50 dose of heat, arsenic, cadmium, butachlor, salt, mannitol (drought), UV-B, and methyl viologen respectively, with respect to control (untreated). Heterologous expression resulted in 23KDa protein observed on the SDS-PAGE. Immunoblotting and MALDI-TOF-MS/MS, followed by MASCOT search analysis, confirmed the identity of the protein and ESI/MS revealed that the purified protein was a dimer. Binding possibility of Alr0765 with ATP was observed with an almost 6-fold increment in relative fluorescence during TNP-ATP binding assay with a λ max of 538 nm. FTIR spectra revealed modification in protein confirmation upon binding of Alr0765 with ATP, ADP, AMP and NADH. A 10-fold higher accumulation of iron was observed in digests of E. coli with recombinant vector after induction as compared to control, which affirms the iron acquisition property of the protein. Moreover, the generation of the redox potential of 146 mV by Alr0765 suggested its probable role in maintaining the redox status of the cell under environmental constraints. As per CFU count recombinant, E. coli BL21 cells showed about 14.7, 7.3, 6.9, 1.9, 3 and 4.9 fold higher number of colonies under heat, cadmium (CdCl2), arsenic (Na3AsO4), salt (NaCl), UV-B and drought (mannitol) respectively compared to pET21a harboring E. coli BL21 cells. Deterioration in the cellular ROS level and total cellular H2O2 concentration validated the stress tolerance ability of Alr0765. In-silico analysis unraveled novel findings and attested experimental findings in determining the role of Alr0765. CONCLUSION Alr0765 is a novel CBS-CP12 domain protein that maintains cellular energy level and iron homeostasis which provides tolerance against multiple abiotic stresses.
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Affiliation(s)
- Antra Chatterjee
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi-221005, India
| | - Shilpi Singh
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi-221005, India
| | - Ruchi Rai
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi-221005, India
| | - Shweta Rai
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi-221005, India
| | - L.C. Rai
- Molecular Biology Section, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi-221005, India
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Libatique MJH, Lee MC, Yeh HY. Effect of Light Intensity on the Mechanism of Inorganic Arsenic Accumulation and Patterns in the Red Macroalga, Sarcodia suiae. Biol Trace Elem Res 2020; 195:291-300. [PMID: 31359334 DOI: 10.1007/s12011-019-01833-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Accepted: 07/11/2019] [Indexed: 10/26/2022]
Abstract
Arsenic is a noted dangerous metalloid found in many organisms, including humans, that accumulate via food consumption of aquatic products such as macroalgae, particularly where they are a major component of the human diet. The mechanism of accumulation of inorganic arsenic (iAs) as the most toxic form of arsenic (As) was investigated under three different light intensities (LI) (30, 55, and 80 μmol photons m-2 s-1) at varied arsenite (As (III)) concentrations (conc) (0, 125, 250, and 500 μg L-1) using Sarcodia suiae, a red marine macroalga. The depigmentation of the algal fronds from deep red to slightly pinkish-orange and solid green has been confirmed as a form of developmental acclimation, and the direct toxic effects of conc and LI were manifested by the degree of severity of this symptom. Two-way ANOVA showed a significant difference in iAs accumulation which depended upon conc and LI. Stepwise regression analysis showed LI as the second most important variable after conc in all treatments. S. suiae did not appear to intracellularly transform As (III) to arsenate (As (V)); hence, As (III) oxidation seemed to be a preliminary biotransformation as reflected by the dominance and increased accumulation of toxic As (III) by the alga. These findings may render it a prospective environmentally friendly candidate for reducing toxic As hazard risk and as a biological component in the treatment of wastewater. Moreover, these results also suggest that a more concerted effort is required in developing protocols for public health concerns regarding food safety and quality regulations in seafood and products sourced from macroalgae including S. suiae.
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Affiliation(s)
| | - Meng-Chou Lee
- Department of Aquaculture, National Taiwan Ocean University, Keelung City, 20224, Taiwan.
- Center of Excellence for Ocean Engineering, National Taiwan Ocean University, Keelung City, 20224, Taiwan.
- Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung City, 20224, Taiwan.
| | - Han-Yang Yeh
- Department of Aquaculture, National Taiwan Ocean University, Keelung City, 20224, Taiwan
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Lebrun M, De Zio E, Miard F, Scippa GS, Renzone G, Scaloni A, Bourgerie S, Morabito D, Trupiano D. Amending an As/Pb contaminated soil with biochar, compost and iron grit: effect on Salix viminalis growth, root proteome profiles and metal(loid) accumulation indexes. CHEMOSPHERE 2020; 244:125397. [PMID: 31812046 DOI: 10.1016/j.chemosphere.2019.125397] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Revised: 09/13/2019] [Accepted: 11/15/2019] [Indexed: 06/10/2023]
Abstract
There is currently a large amount of research being done into the phytoremediation of polluted soils. Plant installation in contaminated soils may require the application of soil amendments, such as biochar, compost and/or iron grit, which can improve the soil conditions and reduce the metal (loid) phytoavailability and mobility. The beneficial effects of these amendments on soil properties, plant growth and metal (loid) accumulation ability have already been described, although their effect on the plants response machinery has been poorly studied. This study aimed to assess the effect of these amendments on Salix viminalis growth and metal (loid) accumulation, as well as elucidating associated molecular mechanisms. The results showed that the amendment applications improved plant growth by three fold, except for the biochar plus iron combination. It also revealed that metal (loid)s were not effectively translocated from the roots to the shoots (translocation factors <1), their bioaccumulation peaked in the roots, and increased in the presence of iron-based amendments. Corresponding proteomic profiles revealed 34 protein spots differentially represented and suggested that plants counteracted metal (loid)-induced oxidative stress after the addition of biochar and/or compost by eliciting proper defense and signaling pathways, and by redirecting the metabolic fluxes towards primary and secondary metabolism. However, they did highlight the occurrence of oxidative stress markers when the biochar plus iron amendment was applied, which could be both the cause and result of protein degradation impairment.
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Affiliation(s)
- Manhattan Lebrun
- Department of Biosciences and Territory, University of Molise, 86090, Pesche, IS, Italy; LBLGC-EA 1207, INRA USC1328, Orléans University, Rue de Chartres, BP 6759, 45067, Orléans Cedex, France
| | - Elena De Zio
- Department of Biosciences and Territory, University of Molise, 86090, Pesche, IS, Italy
| | - Florie Miard
- LBLGC-EA 1207, INRA USC1328, Orléans University, Rue de Chartres, BP 6759, 45067, Orléans Cedex, France
| | - Gabriella S Scippa
- Department of Biosciences and Territory, University of Molise, 86090, Pesche, IS, Italy
| | - Giovanni Renzone
- Proteomics and Mass Spectrometry Laboratory, ISPAAM, National Research Council, 80147, Napoli, Italy
| | - Andrea Scaloni
- Proteomics and Mass Spectrometry Laboratory, ISPAAM, National Research Council, 80147, Napoli, Italy
| | - Sylvain Bourgerie
- LBLGC-EA 1207, INRA USC1328, Orléans University, Rue de Chartres, BP 6759, 45067, Orléans Cedex, France
| | - Domenico Morabito
- LBLGC-EA 1207, INRA USC1328, Orléans University, Rue de Chartres, BP 6759, 45067, Orléans Cedex, France
| | - Dalila Trupiano
- Department of Biosciences and Territory, University of Molise, 86090, Pesche, IS, Italy.
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Barral-Fraga L, Barral MT, MacNeill KL, Martiñá-Prieto D, Morin S, Rodríguez-Castro MC, Tuulaikhuu BA, Guasch H. Biotic and Abiotic Factors Influencing Arsenic Biogeochemistry and Toxicity in Fluvial Ecosystems: A Review. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:ijerph17072331. [PMID: 32235625 PMCID: PMC7177459 DOI: 10.3390/ijerph17072331] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/02/2020] [Revised: 03/17/2020] [Accepted: 03/19/2020] [Indexed: 01/20/2023]
Abstract
This review is focused on the biogeochemistry of arsenic in freshwaters and, especially, on the key role that benthic microalgae and prokaryotic communities from biofilms play together in through speciation, distribution, and cycling. These microorganisms incorporate the dominant iAs (inorganic arsenic) form and may transform it to other arsenic forms through metabolic or detoxifying processes. These transformations have a big impact on the environmental behavior of arsenic because different chemical forms exhibit differences in mobility and toxicity. Moreover, exposure to toxicants may alter the physiology and structure of biofilms, leading to changes in ecosystem function and trophic relations. In this review we also explain how microorganisms (i.e., biofilms) can influence the effects of arsenic exposure on other key constituents of aquatic ecosystems such as fish. At the end, we present two real cases of fluvial systems with different origins of arsenic exposure (natural vs. anthropogenic) that have improved our comprehension of arsenic biogeochemistry and toxicity in freshwaters, the Pampean streams (Argentina) and the Anllóns River (Galicia, Spain). We finish with a briefly discussion of what we consider as future research needs on this topic. This work especially contributes to the general understanding of biofilms influencing arsenic biogeochemistry and highlights the strong impact of nutrient availability on arsenic toxicity for freshwater (micro) organisms.
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Affiliation(s)
- Laura Barral-Fraga
- Grup de recerca en Ecologia aquàtica continental (GRECO), Departament de Ciències Ambientals, Universitat de Girona, 17071 Girona, Spain;
- LDAR24—Laboratoire Départemental d’Analyse et de Recherche du Département de la Dordogne, 24660 Coulounieix-Chamiers, Périgueux, France
- Correspondence:
| | - María Teresa Barral
- Instituto CRETUS, Departmento de Edafoloxía e Química Agrícola, Facultade de Farmacia, Campus Vida, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain; (M.T.B.); (D.M.-P.)
| | - Keeley L. MacNeill
- Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331, USA;
| | - Diego Martiñá-Prieto
- Instituto CRETUS, Departmento de Edafoloxía e Química Agrícola, Facultade de Farmacia, Campus Vida, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain; (M.T.B.); (D.M.-P.)
| | - Soizic Morin
- INRAE—Institut National de Recherche en Agriculture, Alimentation et Environnement, UR EABX—Equipe ECOVEA, 33612 Cestas Cedex, France;
| | - María Carolina Rodríguez-Castro
- INEDES—Instituto de Ecología y Desarrollo Sustentable (UNLu-CONICET), Universidad Nacional de Luján, 6700 Buenos Aires, Argentina;
- CONICET—Consejo Nacional de Investigaciones Científicas y Técnicas, Ciudad Autónoma de Buenos Aires C1425FQB CABA, Argentina
| | - Baigal-Amar Tuulaikhuu
- School of Agroecology, Mongolian University of Life Sciences, Khoroo 11, Ulaanbaatar 17024, Mongolia;
| | - Helena Guasch
- Grup de recerca en Ecologia aquàtica continental (GRECO), Departament de Ciències Ambientals, Universitat de Girona, 17071 Girona, Spain;
- CEAB—Centre d’Estudis Avançats de Blanes, CSIC, Blanes, 17300 Girona, Spain
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Moura KAF, Lizieri C, Wittig Franco M, Vaz MGMV, Araújo WL, Convey P, Barbosa FAR. Physiological and thylakoid ultrastructural changes in cyanobacteria in response to toxic manganese concentrations. ECOTOXICOLOGY (LONDON, ENGLAND) 2019; 28:1009-1021. [PMID: 31471822 DOI: 10.1007/s10646-019-02098-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 08/12/2019] [Indexed: 06/10/2023]
Abstract
In this study, two cyanobacterial strains (morphologically identified as Microcystis novacekii BA005 and Nostoc paludosum BA033) were exposed to different Mn concentrations: 7.0, 10.5, 15.7, 23.6 and 35.4 mg L-1 for BA005; and 15.0, 22.5, 33.7, 50.6, and 76.0 mg L-1 for BA033. Manganese toxicity was assessed by growth rate inhibition (EC50), chlorophyll a content, quantification of Mn accumulation in biomass and monitoring morphological and ultrastructural effects. The Mn EC50 values were 16 mg L-1 for BA005 and 39 mg L-1 for BA033, respectively. Reduction of chlorophyll a contents and ultrastructural changes were observed in cells exposed to Mn concentrations greater than 23.6 and 33.7 mg L-1 for BA005 and BA033. Damage to intrathylakoid spaces, increased amounts of polyphosphate granules and an increased number of carboxysomes were observed in both strains. In the context of the potential application of these strains in bioremediation approaches, BA005 was able to remove Mn almost completely from aqueous medium after 96 h exposure to an initial concentration of 10.5 mg L-1, and BA033 was capable of removing 38% when exposed to initial Mn concentration of 22.5 mg L-1. Our data shed light on how these cyanobacterial strains respond to Mn stress, as well as supporting their utility as organisms for monitoring Mn toxicity in industrial wastes and potential bioremediation application.
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Affiliation(s)
- Karen Ann Ferreira Moura
- Laboratório de Limnologia, Ecotoxicologia e Ecologia Aquática, Instituto de Ciências Biológicas, B. I3, 163, Universidade Federal de Minas Gerais, Avenida Antonio Carlos, 6627, Belo Horizonte, Minas Gerais, 31270-901, Brazil
| | - Claudineia Lizieri
- Laboratório de Limnologia, Ecotoxicologia e Ecologia Aquática, Instituto de Ciências Biológicas, B. I3, 163, Universidade Federal de Minas Gerais, Avenida Antonio Carlos, 6627, Belo Horizonte, Minas Gerais, 31270-901, Brazil
| | - Maione Wittig Franco
- Laboratório de Limnologia, Ecotoxicologia e Ecologia Aquática, Instituto de Ciências Biológicas, B. I3, 163, Universidade Federal de Minas Gerais, Avenida Antonio Carlos, 6627, Belo Horizonte, Minas Gerais, 31270-901, Brazil.
| | - Marcelo Gomes Marçal Vieira Vaz
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
- Max Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Wagner L Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
- Max Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Peter Convey
- British Antarctic Survey, NERC, High Cross, Madingley Road, Cambridge, CB3 0ET, UK
| | - Francisco Antônio Rodrigues Barbosa
- Laboratório de Limnologia, Ecotoxicologia e Ecologia Aquática, Instituto de Ciências Biológicas, B. I3, 163, Universidade Federal de Minas Gerais, Avenida Antonio Carlos, 6627, Belo Horizonte, Minas Gerais, 31270-901, Brazil
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Castro-Severyn J, Pardo-Esté C, Sulbaran Y, Cabezas C, Gariazzo V, Briones A, Morales N, Séveno M, Decourcelle M, Salvetat N, Remonsellez F, Castro-Nallar E, Molina F, Molina L, Saavedra CP. Arsenic Response of Three Altiplanic Exiguobacterium Strains With Different Tolerance Levels Against the Metalloid Species: A Proteomics Study. Front Microbiol 2019; 10:2161. [PMID: 31611848 PMCID: PMC6775490 DOI: 10.3389/fmicb.2019.02161] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Accepted: 09/03/2019] [Indexed: 12/23/2022] Open
Abstract
Exiguobacterium is a polyextremophile bacterial genus with a physiology that allows it to develop in different adverse environments. The Salar de Huasco is one of these environments due to its altitude, atmospheric pressure, solar radiation, temperature variations, pH, salinity, and the presence of toxic compounds such as arsenic. However, the physiological and/or molecular mechanisms that enable them to prosper in these environments have not yet been described. Our research group has isolated several strains of Exiguobacterium genus from different sites of Salar de Huasco, which show different resistance levels to As(III) and As(V). In this work, we compare the protein expression patterns of the three strains in response to arsenic by a proteomic approach; strains were grown in absence of the metalloid and in presence of As(III) and As(V) sublethal concentrations and the protein separation was carried out in 2D electrophoresis gels (2D-GE). In total, 999 spots were detected, between 77 and 173 of which showed significant changes for As(III) among the three strains, and between 90 and 143 for As(V), respectively, compared to the corresponding control condition. Twenty-seven of those were identified by mass spectrometry (MS). Among these identified proteins, the ArsA [ATPase from the As(III) efflux pump] was found to be up-regulated in response to both arsenic conditions in the three strains, as well as the Co-enzyme A disulfide reductase (Cdr) in the two more resistant strains. Interestingly, in this genus the gene that codifies for Cdr is found within the genic context of the ars operon. We suggest that this protein could be restoring antioxidants molecules, necessary for the As(V) reduction. Additionally, among the proteins that change their expression against As, we found several with functions relevant to stress response, e.g., Hpf, LuxS, GLpX, GlnE, and Fur. This study allowed us to shed light into the physiology necessary for these bacteria to be able to tolerate the toxicity and stress generated by the presence of arsenic in their niche.
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Affiliation(s)
- Juan Castro-Severyn
- Laboratorio de Microbiología Molecular, Departamento de Ciencias Biológicas, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile.,Center for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| | - Coral Pardo-Esté
- Laboratorio de Microbiología Molecular, Departamento de Ciencias Biológicas, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| | - Yoelvis Sulbaran
- Laboratorio de Microbiología Molecular, Departamento de Ciencias Biológicas, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| | - Carolina Cabezas
- Laboratorio de Microbiología Molecular, Departamento de Ciencias Biológicas, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| | - Valentina Gariazzo
- Laboratorio de Microbiología Molecular, Departamento de Ciencias Biológicas, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| | - Alan Briones
- Laboratorio de Microbiología Molecular, Departamento de Ciencias Biológicas, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| | - Naiyulin Morales
- Laboratorio de Microbiología Molecular, Departamento de Ciencias Biológicas, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| | - Martial Séveno
- BioCampus Montpellier, CNRS, INSERM, Université de Montpellier, Montpellier, France
| | - Mathilde Decourcelle
- BioCampus Montpellier, CNRS, INSERM, Université de Montpellier, Montpellier, France
| | | | - Francisco Remonsellez
- Laboratorio de Microbiología Aplicada y Extremófilos, Departamento de Ingeniería Química, Facultad de Ingeniería y Ciencias Geológicas, Universidad Católica del Norte, Antofagasta, Chile.,Centro de Investigación Tecnológica del Agua en el Desierto (CEITSAZA), Universidad Católica del Norte, Antofagasta, Chile
| | - Eduardo Castro-Nallar
- Center for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| | - Franck Molina
- Sys2Diag, UMR9005 CNRS ALCEDIAG, Montpellier, France
| | | | - Claudia P Saavedra
- Laboratorio de Microbiología Molecular, Departamento de Ciencias Biológicas, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
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Rai S, Rai R, Singh PK, Rai LC. Alr2321, a multiple stress inducible glyoxalase I of Anabaena sp. PCC7120 detoxifies methylglyoxal and reactive species oxygen. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2019; 214:105238. [PMID: 31301544 DOI: 10.1016/j.aquatox.2019.105238] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Revised: 06/25/2019] [Accepted: 06/26/2019] [Indexed: 06/10/2023]
Abstract
Abiotic stresses enhance the cellular level of reactive oxygen species (ROS) which consequently leads to toxic methylglyoxal (MG) production. Glyoxalases (GlyI & GlyII) catalyze the conversion of toxic MG into non-toxic lactic acid but their properties and functions have been overlooked in cyanobacteria. This is the first attempt to conduct a genome-wide analysis of GlyI protein (PF00903) from Anabaena sp. PCC7120. Out of total nine GlyI domain possessing proteins, only three (Alr2321, Alr4469, All1022) harbour conserve His/Glu/His/Glu metal binding site at their homologous position and are deficient in conserved region specific for Zn2+ dependent members. Their biochemical, structural and functional characterization revealed that only Alr2321 is a homodimeric Ni2+ dependent active GlyI with catalytic efficiency 11.7 × 106 M-1 s-1. It has also been found that Alr2321 is activated by various divalent metal ions and has maximum GlyI activity with Ni2+ followed by Co2+ > Mn2+ > Cu2+ and no activity with Zn2+. Moreover, the expression of alr2321 was found to be maximally up-regulated under heat (19 fold) followed by cadmium, desiccation, arsenic, salinity and UV-B stresses. BL21/pGEX-5X2-alr2321 showed improved growth under various abiotic stresses as compared to BL21/pGEX-5X2 by increased scavenging of intracellular MG and ROS levels. Taken together, these results suggest noteworthy links between intracellular MG and ROS, its detoxification by Alr2321, a member of GlyI family of Anabaena sp. PCC7120, in relation to abiotic stress.
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Affiliation(s)
- Shweta Rai
- Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Ruchi Rai
- Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Prashant Kumar Singh
- Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - L C Rai
- Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India.
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Arsenic-contaminated sediment from mining areas as source of morphological and phylogenetic distinct cyanobacterial lineages. ALGAL RES 2019. [DOI: 10.1016/j.algal.2019.101589] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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Kourpa K, Manarolaki E, Lyratzakis A, Strataki V, Rupprecht F, Langer JD, Tsiotis G. Proteome Analysis of Enriched Heterocysts from Two Hydrogenase Mutants fromAnabaenasp. PCC 7120. Proteomics 2019; 19:e1800332. [DOI: 10.1002/pmic.201800332] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2018] [Revised: 07/12/2019] [Indexed: 11/08/2022]
Affiliation(s)
- Katerina Kourpa
- Division of BiochemistryDepartment of ChemistryUniversity of Crete P.O. Box 2208, GR‐71003 Voutes Greece
| | - Eftychia Manarolaki
- Division of BiochemistryDepartment of ChemistryUniversity of Crete P.O. Box 2208, GR‐71003 Voutes Greece
| | - Alexandros Lyratzakis
- Division of BiochemistryDepartment of ChemistryUniversity of Crete P.O. Box 2208, GR‐71003 Voutes Greece
| | - Vasso Strataki
- Division of BiochemistryDepartment of ChemistryUniversity of Crete P.O. Box 2208, GR‐71003 Voutes Greece
| | - Fiona Rupprecht
- Max Planck Institute for Brain Research Max‐von‐Laue‐Straße 4 D‐60438 Frankfurt am Main Germany
| | - Julian D. Langer
- Max Planck Institute for Brain Research Max‐von‐Laue‐Straße 4 D‐60438 Frankfurt am Main Germany
- Max Planck Institute for Biophysics Max‐von‐Laue‐Straße 3 D‐60438 Frankfurt am Main Germany
| | - Georgios Tsiotis
- Division of BiochemistryDepartment of ChemistryUniversity of Crete P.O. Box 2208, GR‐71003 Voutes Greece
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Expression of Genes and Proteins Involved in Arsenic Respiration and Resistance in Dissimilatory Arsenate-Reducing Geobacter sp. Strain OR-1. Appl Environ Microbiol 2019; 85:AEM.00763-19. [PMID: 31101608 DOI: 10.1128/aem.00763-19] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2019] [Accepted: 05/08/2019] [Indexed: 12/13/2022] Open
Abstract
The reduction of arsenate [As(V)] to arsenite [As(III)] by dissimilatory As(V)-reducing bacteria, such as Geobacter spp., may play a significant role in arsenic release from anaerobic sediments into groundwater. The biochemical and molecular mechanisms by which these bacteria cope with this toxic element remain unclear. In this study, the expression of several genes involved in arsenic respiration (arr) and resistance (ars) was determined using Geobacter sp. strain OR-1, the only cultured Geobacter strain capable of As(V) respiration. In addition, proteins expressed differentially under As(V)-respiring conditions were identified by semiquantitative proteomic analysis. Dissimilatory As(V) reductase (Arr) of strain OR-1 was localized predominantly in the periplasmic space, and the transcription of its gene (arrA) was upregulated under As(V)-respiring conditions. The transcription of the detoxifying As(V) reductase gene (arsC) was also upregulated, but its induction required 500 times higher concentration of As(III) (500 μM) than did the arrA gene. Comparative proteomic analysis revealed that in addition to the Arr and Ars proteins, proteins involved in the following processes were upregulated under As(V)-respiring conditions: (i) protein folding and assembly for rescue of proteins with oxidative damage, (ii) DNA replication and repair for restoration of DNA breaks, (iii) anaplerosis and gluconeogenesis for sustainable energy production and biomass formation, and (iv) protein and nucleotide synthesis for the replacement of damaged proteins and nucleotides. These results suggest that strain OR-1 copes with arsenic stress by orchestrating pleiotropic processes that enable this bacterium to resist and actively metabolize arsenic.IMPORTANCE Dissimilatory As(V)-reducing bacteria, such as Geobacter spp., play significant roles in arsenic release and contamination in groundwater and threaten the health of people worldwide. However, the biochemical and molecular mechanisms by which these bacteria cope with arsenic toxicity remain unclear. In this study, it was found that both respiratory and detoxifying As(V) reductases of a dissimilatory As(V)-reducing bacterium, Geobacter sp. strain OR-1, were upregulated under As(V)-respiring conditions. In addition, various proteins expressed specifically or more abundantly in strain OR-1 under arsenic stress were identified. Strain OR-1 actively metabolizes arsenic while orchestrating various metabolic processes that repair oxidative damage caused by arsenic. Such information is useful in assessing and identifying possible countermeasures for the prevention of microbial arsenic release in nature.
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Babele PK, Kumar J, Chaturvedi V. Proteomic De-Regulation in Cyanobacteria in Response to Abiotic Stresses. Front Microbiol 2019; 10:1315. [PMID: 31263458 PMCID: PMC6584798 DOI: 10.3389/fmicb.2019.01315] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2018] [Accepted: 05/27/2019] [Indexed: 11/13/2022] Open
Abstract
Cyanobacteria are oxygenic photoautotrophs, exhibiting a cosmopolitan distribution in almost all possible environments and are significantly responsible for half of the global net primary productivity. They are well adapted to the diverse environments including harsh conditions by evolving a range of fascinating repertoires of unique biomolecules and secondary metabolites to support their growth and survival. These phototrophs are proved as excellent models for unraveling the mysteries of basic biochemical and physiological processes taking place in higher plants. Several known species of cyanobacteria have tremendous biotechnological applications in diverse fields such as biofuels, biopolymers, secondary metabolites and much more. Due to their potential biotechnological and commercial applications in various fields, there is an imperative need to engineer robust cyanobacteria in such a way that they can tolerate and acclimatize to ever-changing environmental conditions. Adaptations to stress are mainly governed by a precise gene regulation pathways resulting in the expression of novel protein/enzymes and metabolites. Despite the demand, till date few proteins/enzymes have been identified which play a potential role in improving tolerance against abiotic stresses. Therefore, it is utmost important to study environmental stress responses related to post-genomic investigations, including proteomic changes employing advanced proteomics, synthetic and structural biology workflows. In this respect, the study of stress proteomics offers exclusive advantages to scientists working on these aspects. Advancements on these fields could be helpful in dissecting, characterization and manipulation of physiological and metabolic systems of cyanobacteria to understand the stress induced proteomic responses. Till date, it remains ambiguous how cyanobacteria perceive changes in the ambient environment that lead to the stress-induced proteins thus metabolic deregulation. This review briefly describes the current major findings in the fields of proteome research on the cyanobacteria under various abiotic stresses. These findings may improve and advance the information on the role of different class of proteins associated with the mechanism(s) of stress mitigation in cyanobacteria under harsh environmental conditions.
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Affiliation(s)
- Piyoosh Kumar Babele
- Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Bhopal, India
- School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, India
| | - Jay Kumar
- School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, India
| | - Venkatesh Chaturvedi
- School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, India
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Pernil R, Schleiff E. Metalloproteins in the Biology of Heterocysts. Life (Basel) 2019; 9:E32. [PMID: 30987221 PMCID: PMC6616624 DOI: 10.3390/life9020032] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Revised: 03/18/2019] [Accepted: 03/28/2019] [Indexed: 12/15/2022] Open
Abstract
Cyanobacteria are photoautotrophic microorganisms present in almost all ecologically niches on Earth. They exist as single-cell or filamentous forms and the latter often contain specialized cells for N₂ fixation known as heterocysts. Heterocysts arise from photosynthetic active vegetative cells by multiple morphological and physiological rearrangements including the absence of O₂ evolution and CO₂ fixation. The key function of this cell type is carried out by the metalloprotein complex known as nitrogenase. Additionally, many other important processes in heterocysts also depend on metalloproteins. This leads to a high metal demand exceeding the one of other bacteria in content and concentration during heterocyst development and in mature heterocysts. This review provides an overview on the current knowledge of the transition metals and metalloproteins required by heterocysts in heterocyst-forming cyanobacteria. It discusses the molecular, physiological, and physicochemical properties of metalloproteins involved in N₂ fixation, H₂ metabolism, electron transport chains, oxidative stress management, storage, energy metabolism, and metabolic networks in the diazotrophic filament. This provides a detailed and comprehensive picture on the heterocyst demands for Fe, Cu, Mo, Ni, Mn, V, and Zn as cofactors for metalloproteins and highlights the importance of such metalloproteins for the biology of cyanobacterial heterocysts.
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Affiliation(s)
- Rafael Pernil
- Institute for Molecular Biosciences, Goethe University Frankfurt, Max-von-Laue-Straβe 9, 60438 Frankfurt am Main, Germany.
| | - Enrico Schleiff
- Institute for Molecular Biosciences, Goethe University Frankfurt, Max-von-Laue-Straβe 9, 60438 Frankfurt am Main, Germany.
- Frankfurt Institute for Advanced Studies, Ruth-Moufang-Straße 1, 60438 Frankfurt am Main, Germany.
- Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Max-von-Laue-Straβe 15, 60438 Frankfurt am Main, Germany.
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Lee MC, Libatique MJH, Yeh SY. The Effect of Environmental Factors on Total Arsenic Accumulation in Sarcodia suiae, Rhodophyta. BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2019; 102:385-390. [PMID: 30554351 DOI: 10.1007/s00128-018-2520-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2018] [Accepted: 12/08/2018] [Indexed: 06/09/2023]
Abstract
Little is known about the effects of environmental factors on total arsenic (TAs) accumulation in marine Rhodophyta. The effects of five environmental factors (temperature, light intensity, pH, exposure duration, and phosphate) at various As(III) concentrations were investigated in Sarcodia suiae. The highest TAs accumulations were recorded at 25°C, a luminance of 80 µmol photons m-2 s-1, and a pH of 8. TAs uptake increased significantly over time. However, a higher phosphate concentration reduced TAs accumulation. These data show that the extent of TAs accumulation depends on various environmental factors. Hence, our results suggest a potential in arsenic recovery process in wastewater treatments. S. suiae may provide a new means of reducing levels of arsenic in contaminated water and may be used as a potential Rhodophyta model for investigating other types of heavy metal pollution in future.
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Affiliation(s)
- Meng-Chou Lee
- Department of Aquaculture, National Taiwan Ocean University, 2 Pei-Ning Road, Keelung, 20224, Taiwan.
- Center of Excellence for Ocean Engineering, National Taiwan Ocean University, 2 Pei-Ning Road, Keelung, 20224, Taiwan.
| | - Mary Joy Halog Libatique
- Department of Aquaculture, National Taiwan Ocean University, 2 Pei-Ning Road, Keelung, 20224, Taiwan
| | - Siao-Yu Yeh
- Department of Aquaculture, National Pingtung University of Science and Technology, Pingtung, 91201, Taiwan
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Molecular and biochemical characterization of All0580 as a methylglyoxal detoxifying glyoxalase II of Anabaena sp. PCC7120 that confers abiotic stress tolerance in E. coli. Int J Biol Macromol 2019; 124:981-993. [DOI: 10.1016/j.ijbiomac.2018.11.172] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Revised: 11/17/2018] [Accepted: 11/17/2018] [Indexed: 12/13/2022]
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Sen S, Rai R, Chatterjee A, Rai S, Yadav S, Agrawal C, Rai LC. Molecular characterization of two novel proteins All1122 and Alr0750 of Anabaena PCC 7120 conferring tolerance to multiple abiotic stresses in Escherichia coli. Gene 2019; 685:230-241. [PMID: 30448320 DOI: 10.1016/j.gene.2018.11.038] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2018] [Revised: 09/28/2018] [Accepted: 11/08/2018] [Indexed: 11/19/2022]
Abstract
In- silico and functional genomics approaches have been used to determine cellular functions of two hypothetical proteins All1122 and Alr0750 of Anabaena sp. PCC 7120. Motif analysis and multiple sequence alignment predicted them as typical α/β ATP binding universal stress family protein-A (UspA) with G-(2×)-G-(9×)-G(S/T) as conserved motif. qRT-PCR data under UV-B, NaCl, heat, As, CdCl2, mannitol and methyl viologen registered approximately 1.4 to 4.3 fold induction of all1122 and alr0750 thus confirming their multiple abiotic stress tolerance potential. The recombinant E. coli (BL21) cells harboring All1122 and Alr0750 showed 12-41% and 23-41% better growth respectively over wild type control under said abiotic stresses thus revalidating their stress coping ability. Functional complementation on heterologous expression in UspA mutant E. coli strain LN29MG1655 (ΔuspA::Kan) attested their UspA family membership. This study tempted us to suggest that recombinant Anabaena PCC 7120 over expressing all1122 and alr0750 might contribute to the nitrogen economy in paddy fields experiencing array of abiotic stresses including drought and nutrient limitation.
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Affiliation(s)
- Sonia Sen
- Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Ruchi Rai
- Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Antra Chatterjee
- Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Shweta Rai
- Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Shivam Yadav
- Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Chhavi Agrawal
- Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - L C Rai
- Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India.
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Khanna K, Jamwal VL, Kohli SK, Gandhi SG, Ohri P, Bhardwaj R, Abd Allah EF, Hashem A, Ahmad P. Plant growth promoting rhizobacteria induced Cd tolerance in Lycopersicon esculentum through altered antioxidative defense expression. CHEMOSPHERE 2019; 217:463-474. [PMID: 30445394 DOI: 10.1016/j.chemosphere.2018.11.005] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2018] [Revised: 10/24/2018] [Accepted: 11/01/2018] [Indexed: 05/08/2023]
Abstract
The present study was designed to determine the role of plant growth-promoting rhizobacteria (Pseudomonas aeruginosa &Burkholderia gladioli) in alleviating Cd stress in Lycopersicon esculentum. Cd concentration of 0.4 mM enhanced superoxide anions, MDA and H2O2 by 136%, 378% and 137% that also caused nuclear and cell viability damage. Cd enhanced the activities of enzymatic antioxidants such as CAT, GST, GPOX, DHAR, and GR by 64%, 126%, 265%, 25% and 93% respectively. However, SOD, POD and PPO was decreased by Cd and enhanced by 119%, 198% and 42% by inoculation of P. aeruginosa and 65%, 119% and 33% by B. gladioli. The contents of non-enzymatic antioxidants and total antioxidants (WSA, LSA) were also enhanced in response to metal stress and reduced by supplementation with PGPR. Confocal microscopy revealed improved cell viability and decreased nuclear damage in Cd-treated L. esculentum roots supplemented with PGPRs. Gene expression studies conducted through qRT-PCR revealed that expression levels of the SOD, POD, and PPO genes were enhanced by 478%, 830% and 253%, while the expression of CAT, GR, GST, GPOX, and APOX genes decreased by 97%, 87%, 75%, 82%, 88% in P. aeruginosa-inoculated Cd-treated seedlings. Also, B. gladioli elevated the expression of SOD, POD and PPO genes and reduced the expression of CAT, GR, GPOX, APOX and GST genes respectively. Therefore, the results suggest that Cd induced oxidative stress in L. esculentum seedlings was reduced by PGPRs through modulation of antioxidative defence expression as demonstrated in terms of antioxidants both quantitatively as well as qualitatively.
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Affiliation(s)
- Kanika Khanna
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, 143005, India
| | - Vijay Lakshmi Jamwal
- Indian Institute of Integrative Medicine (CSIR-IIIM), Council of Scientific and Industrial Research, Canal Road, Jammu, 180 001, India
| | - Sukhmeen Kaur Kohli
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, 143005, India
| | - Sumit G Gandhi
- Indian Institute of Integrative Medicine (CSIR-IIIM), Council of Scientific and Industrial Research, Canal Road, Jammu, 180 001, India
| | - Puja Ohri
- Department of Zoology, Guru Nanak Dev University, Amritsar, 143005, India
| | - Renu Bhardwaj
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, 143005, India.
| | - Elsayed Fathi Abd Allah
- Plant Production Department, College of Food and Agricultural Sciences, King Saud University, P.O. Box. 2460, Riyadh, 11451, Saudi Arabia
| | - Abeer Hashem
- Botany and Microbiology Department, College of Science, King Saud University, P.O. Box. 2460, Riyadh, 11451, Saudi Arabia; Mycology and Plant Disease Survey Department, Plant Pathology Research Institute, Agricultural Research Center, Giza, Egypt
| | - Parvaiz Ahmad
- Botany and Microbiology Department, College of Science, King Saud University, P.O. Box. 2460, Riyadh, 11451, Saudi Arabia; Department of Botany, S.P. College Srinagar, Jammu and Kashmir, India.
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Freitas AC, Gomes AM. Analytical approaches for proteomics and lipidomics of arsenic in algae. ACTA ACUST UNITED AC 2019. [DOI: 10.1016/bs.coac.2019.03.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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Hussain MM, Bibi I, Shahid M, Shaheen SM, Shakoor MB, Bashir S, Younas F, Rinklebe J, Niazi NK. Biogeochemical cycling, speciation and transformation pathways of arsenic in aquatic environments with the emphasis on algae. ARSENIC SPECIATION IN ALGAE 2019. [DOI: 10.1016/bs.coac.2019.03.007] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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Chen L, Zhang L. Arsenic speciation in Asiatic algae: Case studies in Asiatic continent. ARSENIC SPECIATION IN ALGAE 2019. [DOI: 10.1016/bs.coac.2019.03.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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Ming T, Han J, Li Y, Lu C, Qiu D, Li Y, Zhou J, Su X. A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation. BMC Microbiol 2018; 18:216. [PMID: 30563460 PMCID: PMC6299570 DOI: 10.1186/s12866-018-1354-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Accepted: 11/26/2018] [Indexed: 12/16/2022] Open
Abstract
Background Lactobacillus plantarum, a versatile lactic acid-fermenting bacterium, isolated from the traditional pickles in Ningbo of China, was chosen for grass carp fermentation, which could also improve the flavor of grass carp. We here explored the central metabolic pathways of L. plantarum by using metabolomic approach, and further proved the potential for metabolomics combined with proteomics approaches for the basic research on the changes of metabolites and the corresponding fermentation mechanism of L. plantarum fermentation. Results This study provides a cellular material footprinting of more than 77 metabolites and 27 proteins in L. plantarum during the grass carp fermentation. Compared to control group, cells displayed higher levels of proteins associated with glycolysis and nucleotide synthesis, whereas increased levels of serine, ornithine, aspartic acid, 2-piperidinecarboxylic acid, and fumarate, along with decreased levels of alanine, glycine, threonine, tryptophan, and lysine. Conclusions Our results may provide a deeper understanding of L. plantarum fermentation mechanism based on metabolomics and proteomic analysis and facilitate future investigations into the characterization of L. plantarum during the grass carp fermentation. Electronic supplementary material The online version of this article (10.1186/s12866-018-1354-x) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Tinghong Ming
- College of Food and Pharmaceutical Sciences, Ningbo University, 169 Qixing South Road, Meishan, Ningbo, China.,School of Marine Sciences, Ningbo University, 818 Fenghua Road, Ningbo, China
| | - Jiaojiao Han
- College of Food and Pharmaceutical Sciences, Ningbo University, 169 Qixing South Road, Meishan, Ningbo, China.,School of Marine Sciences, Ningbo University, 818 Fenghua Road, Ningbo, China
| | - Yanyan Li
- Department of Food Science, Cornell University, New York, USA
| | - Chenyang Lu
- School of Marine Sciences, Ningbo University, 818 Fenghua Road, Ningbo, China
| | - Dihong Qiu
- Hangzhou Medical College, Hangzhou, China
| | - Ye Li
- School of Marine Sciences, Ningbo University, 818 Fenghua Road, Ningbo, China
| | - Jun Zhou
- School of Marine Sciences, Ningbo University, 818 Fenghua Road, Ningbo, China
| | - Xiurong Su
- School of Marine Sciences, Ningbo University, 818 Fenghua Road, Ningbo, China.
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