1
|
Escayola S, Bahri-Laleh N, Poater A. % VBur index and steric maps: from predictive catalysis to machine learning. Chem Soc Rev 2024; 53:853-882. [PMID: 38113051 DOI: 10.1039/d3cs00725a] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2023]
Abstract
Steric indices are parameters used in chemistry to describe the spatial arrangement of atoms or groups of atoms in molecules. They are important in determining the reactivity, stability, and physical properties of chemical compounds. One commonly used steric index is the steric hindrance, which refers to the obstruction or hindrance of movement in a molecule caused by bulky substituents or functional groups. Steric hindrance can affect the reactivity of a molecule by altering the accessibility of its reactive sites and influencing the geometry of its transition states. Notably, the Tolman cone angle and %VBur are prominent among these indices. Actually, steric effects can also be described using the concept of steric bulk, which refers to the space occupied by a molecule or functional group. Steric bulk can affect the solubility, melting point, boiling point, and viscosity of a substance. Even though electronic indices are more widely used, they have certain drawbacks that might shift preferences towards others. They present a higher computational cost, and often, the weight of electronics in correlation with chemical properties, e.g. binding energies, falls short in comparison to %VBur. However, it is worth noting that this may be because the steric index inherently captures part of the electronic content. Overall, steric indices play an important role in understanding the behaviour of chemical compounds and can be used to predict their reactivity, stability, and physical properties. Predictive chemistry is an approach to chemical research that uses computational methods to anticipate the properties and behaviour of these compounds and reactions, facilitating the design of new compounds and reactivities. Within this domain, predictive catalysis specifically targets the prediction of the performance and behaviour of catalysts. Ultimately, the goal is to identify new catalysts with optimal properties, leading to chemical processes that are both more efficient and sustainable. In this framework, %VBur can be a key metric for deepening our understanding of catalysis, emphasizing predictive catalysis and sustainability. Those latter concepts are needed to direct our efforts toward identifying the optimal catalyst for any reaction, minimizing waste, and reducing experimental efforts while maximizing the efficacy of the computational methods.
Collapse
Affiliation(s)
- Sílvia Escayola
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, c/Mª Aurèlia Capmany 69, 17003 Girona, Catalonia, Spain.
- Donostia International Physics Center (DIPC), 20018 Donostia, Euskadi, Spain
| | - Naeimeh Bahri-Laleh
- Iran Polymer and Petrochemical Institute (IPPI), P.O. Box 14965/115, Tehran, Iran
- Institute for Sustainability with Knotted Chiral Meta Matter (WPI-SKCM), Hiroshima University, Hiroshima, 739-8526, Japan
| | - Albert Poater
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, c/Mª Aurèlia Capmany 69, 17003 Girona, Catalonia, Spain.
| |
Collapse
|
2
|
Monreal-Corona R, Solà M, Pla-Quintana A, Poater A. Stereoretentive Formation of Cyclobutanes from Pyrrolidines: Lessons Learned from DFT Studies of the Reaction Mechanism. J Org Chem 2023; 88:4619-4626. [PMID: 36940389 PMCID: PMC10088030 DOI: 10.1021/acs.joc.3c00080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2023]
Abstract
The stereoselective synthesis of cyclobutanes that possess an array of stereocenters in a contiguous fashion has attracted the wide interest of the synthetic community. Cyclobutanes can be generated from the contraction of pyrrolidines through the formation of 1,4-biradical intermediates. Little else is known about the reaction mechanism of this reaction. Here, we unveil the mechanism for this stereospecific synthesis of cyclobutanes by means of density functional theory (DFT) calculations. The rate-determining step of this transformation corresponds to the release of N2 from the 1,1-diazene intermediate to form an open-shell singlet 1,4-biradical. The formation of the stereoretentive product is explained by the barrierless collapse of this open-shell singlet 1,4-biradical. The knowledge of the reaction mechanism is used to predict that the methodology could be amenable to the synthesis of [2]-ladderanes and bicyclic cyclobutanes.
Collapse
Affiliation(s)
- Roger Monreal-Corona
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/ Maria Aurèlia Capmany 69, 17003 Girona, Catalonia, Spain
| | - Miquel Solà
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/ Maria Aurèlia Capmany 69, 17003 Girona, Catalonia, Spain
| | - Anna Pla-Quintana
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/ Maria Aurèlia Capmany 69, 17003 Girona, Catalonia, Spain
| | - Albert Poater
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/ Maria Aurèlia Capmany 69, 17003 Girona, Catalonia, Spain
| |
Collapse
|
3
|
Wu Y, Zhao W, Wang Y, Wang B, Fan M, Zhang R. Enhancing Catalytic Performance through Subsurface Chemistry: The Case of C 2H 2 Semihydrogenation over Pd Catalysts. ACS APPLIED MATERIALS & INTERFACES 2022; 14:56743-56757. [PMID: 36515505 DOI: 10.1021/acsami.2c16317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Subsurface chemistry in heterogeneous catalysis plays an important role in tuning catalytic performance. Aiming to unravel the role of subsurface heteroatoms, C2H2 semihydrogenation on a series of Pd catalysts doped with subsurface heteroatom H, B, C, N, P, or S was fully investigated by density functional theory (DFT) calculations together with microkinetic modeling. The obtained results showed that catalytic performance toward C2H2 semihydrogenation was affected significantly by the type and coverage of subsurface heteroatoms. The Pd-B0.5 and Pd-C0.5 catalysts with 1/2 monolayer (ML) heteroatom coverage, as well as Pd-N, Pd-P, and Pd-S catalysts with 1/16 ML heteroatom coverage, were screened to not only obviously improve C2H4 selectivity and activity but also effectively suppress green oil. The essential reason for subsurface heteroatoms in tuning catalytic performance is attributed to the distinctive surface Pd electronic and geometric structures caused by subsurface heteroatoms. In the Pd-B0.5 and Pd-C0.5 catalysts, the Pd surface electronic and geometric effects play the dominant role, while the geometric effect plays a key role in the Pd-N, Pd-P, and Pd-S catalysts. The findings provide theoretically valuable information for designing high-performance metal catalysts in alkyne semihydrogenation through subsurface chemistry.
Collapse
Affiliation(s)
- Yueyue Wu
- State Key Laboratory of Clean and Efficient Coal Utilization, Taiyuan University of Technology, Taiyuan030024, Shanxi, P. R. China
- College of Chemical Engineering and Technology, Taiyuan University of Technology, Taiyuan030024, Shanxi, P. R. China
| | - Wantong Zhao
- State Key Laboratory of Clean and Efficient Coal Utilization, Taiyuan University of Technology, Taiyuan030024, Shanxi, P. R. China
- College of Chemical Engineering and Technology, Taiyuan University of Technology, Taiyuan030024, Shanxi, P. R. China
| | - Yuan Wang
- State Key Laboratory of Clean and Efficient Coal Utilization, Taiyuan University of Technology, Taiyuan030024, Shanxi, P. R. China
- College of Chemical Engineering and Technology, Taiyuan University of Technology, Taiyuan030024, Shanxi, P. R. China
| | - Baojun Wang
- State Key Laboratory of Clean and Efficient Coal Utilization, Taiyuan University of Technology, Taiyuan030024, Shanxi, P. R. China
- College of Chemical Engineering and Technology, Taiyuan University of Technology, Taiyuan030024, Shanxi, P. R. China
| | - Maohong Fan
- Departments of Chemical and Petroleum Engineering, University of Wyoming, Laramie, Wyoming82071, United States
- School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia30332, United States
- School of Energy Resources, University of Wyoming, Laramie, Wyoming82071, United States
| | - Riguang Zhang
- State Key Laboratory of Clean and Efficient Coal Utilization, Taiyuan University of Technology, Taiyuan030024, Shanxi, P. R. China
- College of Chemical Engineering and Technology, Taiyuan University of Technology, Taiyuan030024, Shanxi, P. R. China
| |
Collapse
|
4
|
Tomasini M, Zhang J, Zhao H, Besalú E, Falivene L, Caporaso L, Szostak M, Poater A. A predictive journey towards trans-thioamides/amides. Chem Commun (Camb) 2022; 58:9950-9953. [PMID: 35983851 DOI: 10.1039/d2cc04228b] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The cis-trans isomerization of (thio)amides was studied by DFT calculations to get the model for the higher preference for the cis conformation by guided predictive chemistry, suggesting how to select the alkyl/aryl substituents on the C/N atoms that lead to the trans isomer. Multilinear analysis, together with cross-validation analysis, helped to select the best fitting parameters to achieve the energy barriers of the cis to trans interconversion, as well as the relative stability between both isomers. Double experimental check led to the synthesis of the best trans candidate with sterically demanding t-butyl substituents, confirming the utility of predictive chemistry, bridging organic and computational chemistry.
Collapse
Affiliation(s)
- Michele Tomasini
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/Maria Aurèlia Capmany 69, 17003, Girona, Catalonia, Spain. .,Dipartimento di Chimica e Biologia, Università di Salerno, Via Ponte don Melillo, 84084, Fisciano, Italy
| | - Jin Zhang
- College of Chemistry and Chemical Engineering, Key Laboratory of Chemical Additives for China National Light Industry, Shaanxi University of Science and Technology, 6 Xuefu Road, Xi'an, 710021, China
| | - Hui Zhao
- College of Chemistry and Chemical Engineering, Key Laboratory of Chemical Additives for China National Light Industry, Shaanxi University of Science and Technology, 6 Xuefu Road, Xi'an, 710021, China
| | - Emili Besalú
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/Maria Aurèlia Capmany 69, 17003, Girona, Catalonia, Spain.
| | - Laura Falivene
- Dipartimento di Chimica e Biologia, Università di Salerno, Via Ponte don Melillo, 84084, Fisciano, Italy
| | - Lucia Caporaso
- Dipartimento di Chimica e Biologia, Università di Salerno, Via Ponte don Melillo, 84084, Fisciano, Italy
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, NJ, 07102, USA
| | - Albert Poater
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/Maria Aurèlia Capmany 69, 17003, Girona, Catalonia, Spain.
| |
Collapse
|
5
|
Exploring cocatalyst type effect on the Ziegler–Natta catalyzed ethylene polymerizations: experimental and DFT studies. JOURNAL OF POLYMER RESEARCH 2022. [DOI: 10.1007/s10965-022-03050-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
AbstractDue to the important role of cocatalyst in the polymerization process employing industrially favored Ziegler–Natta catalysts, its effect on kinetic behavior, catalyst activity, and polymer properties is discussed. In this paper, triethyl aluminum (TEA) and triisobutyl aluminum (TIBA) have been used as the main cocatalyst ingredient with 10–20 mol percent of diethyl aluminum chloride (DEAC) and ethyl aluminum dichloride (EADC) cocatalysts, being neat TEA the cocatalysts with the highest activity. Moreover, TEA-DEAC and TEA-EADC cocatalysts revealed a built-up kinetic profile, while TIBA-DEAC and TIBA-EADC show a decay-type kinetic curve. According to melt flow index results, no considerable change in flowability was detected in the synthesized polyethylenes (PE). On the other hand, the ethylene insertion and chain termination mechanisms were investigated by means of density functional calculations using Ti active center located in (110) and (104) facets of the MgCl2 surface. To shed light on the bulkiness level of employed cocatalysts, buried volume (VBur) together with the two-dimensional map of cocatalyst systems were considered. Higher VBur of TIBA complex can explain its lower activity and decay type kinetic profile obtained by experimental studies.
Collapse
|
6
|
Shams A, Sadjadi S, Duran J, Simon S, Poater A, Bahri‐Laleh N. Effect of support hydrophobicity of halloysite based catalysts on the PAO hydrofinishing performance. Appl Organomet Chem 2022. [DOI: 10.1002/aoc.6719] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Arash Shams
- Department of Polymer Engineering and Color Technology Amirkabir University of Technology Tehran Iran
| | - Samahe Sadjadi
- Gas Conversion Department, Faculty of Petrochemicals Iran Polymer and Petrochemical Institute Tehran Iran
| | - Josep Duran
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona Girona Catalonia Spain
| | - Sílvia Simon
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona Girona Catalonia Spain
| | - Albert Poater
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona Girona Catalonia Spain
| | - Naeimeh Bahri‐Laleh
- Polymerization Engineering Department Iran Polymer and Petrochemical Institute (IPPI) Tehran Iran
| |
Collapse
|
7
|
Cicolella A, C. D'Alterio M, Duran J, Simon S, Talarico G, Poater A. Combining Both Acceptorless Dehydrogenation and Borrowing Hydrogen Mechanisms in One System as Described by DFT Calculations. ADVANCED THEORY AND SIMULATIONS 2022. [DOI: 10.1002/adts.202100566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Alessandra Cicolella
- Institut de Química Computacional i Catàlisi and Departament de Química Universitat de Girona C/ Maria Aurèlia Capmany, 69, Girona Catalonia 17003 Spain
- Dipartimento di Scienze Chimiche Università di Napoli Federico II Via Cintia Napoli I‐80126 Italy
| | - Massimo C. D'Alterio
- Institut de Química Computacional i Catàlisi and Departament de Química Universitat de Girona C/ Maria Aurèlia Capmany, 69, Girona Catalonia 17003 Spain
- Dipartimento di Chimica e Biologia "A. Zambelli" Università di Salerno Via Giovanni Paolo II 132 Fisciano Salerno 84084 Italy
| | - Josep Duran
- Institut de Química Computacional i Catàlisi and Departament de Química Universitat de Girona C/ Maria Aurèlia Capmany, 69, Girona Catalonia 17003 Spain
| | - Sílvia Simon
- Institut de Química Computacional i Catàlisi and Departament de Química Universitat de Girona C/ Maria Aurèlia Capmany, 69, Girona Catalonia 17003 Spain
| | - Giovanni Talarico
- Dipartimento di Scienze Chimiche Università di Napoli Federico II Via Cintia Napoli I‐80126 Italy
| | - Albert Poater
- Institut de Química Computacional i Catàlisi and Departament de Química Universitat de Girona C/ Maria Aurèlia Capmany, 69, Girona Catalonia 17003 Spain
| |
Collapse
|
8
|
Kar S, Milstein D. Sustainable catalysis with fluxional acridine-based PNP pincer complexes. Chem Commun (Camb) 2022; 58:3731-3746. [PMID: 35234797 PMCID: PMC8932388 DOI: 10.1039/d2cc00247g] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Accepted: 02/23/2022] [Indexed: 12/14/2022]
Abstract
Because of the widespread use of fossil fuels and the resulting global warming, development of sustainable catalytic transformations is now more important than ever to obtain our desired fuels and building materials with the least carbon footprint and waste production. Many sustainable (de)hydrogenation reactions, including CO2 reduction, H2 carrier systems, and others, have been reported using molecular pincer complexes. A specific subset of pincer complexes containing a central acridine donor with flanking CH2PR2 ligands, known as acridine-based PNP pincer complexes, exhibit special reactivities that are not imitable by other PNP pincer complexes such as pyridine-based or (R2PCH2CH2)2NH type ligands. The goal of this article is to highlight the unique reactivities of acridine-based complexes and then investigate how these reactivities allow these complexes to catalyse many sustainable reactions that traditional pincer complexes cannot catalyse. To that end, we will initially go over the synthesis and structural features of acridine complexes, such as the labile coordination of the central N donor and the observed fac-mer fluxionality. Following that, distinct reactivity patterns of acridine-based complexes including their reactivity with acids and water will be discussed. Finally, we will discuss the reaction systems that have been developed with acridine complexes thus far, including the notable selective transformations of primary alcohols to primary amines using ammonia, N-heteroaromatic synthesis from alcohols and ammonia, oxidation reactions with water with H2 liberation, development of H2 carrier systems, and others, and conclude the article with future possible directions. We hope that the systemic study presented here will aid researchers in developing further sustainable reactions based on the unique acridine-based pincer complexes.
Collapse
Affiliation(s)
- Sayan Kar
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, Rehovot 76100, Israel.
| | - David Milstein
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, Rehovot 76100, Israel.
| |
Collapse
|
9
|
Monreal Corona R, Besalu E, Pla Quintana A, Poater A. A Predictive Chemistry DFT Study of the N 2O Functionalization for the Preparation of Triazolopyridine and Triazoloquinoline Scaffolds. Org Chem Front 2022. [DOI: 10.1039/d2qo00589a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The whole reaction mechanism of the functionalization of N2O for the synthesis of triazolopyridine and triazoloquinoline scaffolds has been unveiled by means of DFT calculations. The rate determining step of...
Collapse
|
10
|
Pablo Martínez J, Solà M, Poater A. Predictive Catalysis in Olefin Metathesis with Ru-based Catalysts with Annulated C 60 Fullerenes in the N-heterocyclic Carbenes. Chemistry 2021; 27:18074-18083. [PMID: 34523164 DOI: 10.1002/chem.202100840] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2021] [Indexed: 11/09/2022]
Abstract
Predictive catalysis must be the tool that does not replace experiments, but acts as a selective agent, so that synthetic strategies of maximum profitability are used in the laboratory in a surgical way. Here, nanotechnology has been used in olefin metathesis from homogeneous Ru-NHC catalysts, specifically annulating a C60 fullerene to the NHC ligand. Based on results with the C60 in the backbone, a sterile change with respect to the catalysis of the metal center, an attempt has been made to bring C60 closer to the metal, by attaching it to one of the two C-N bonds of the imidazole group of the SIMes (1,3-bis(2,4,6-trimethylphenyl)imidazolin-2-ylidene) ligand (reference NHC ligand of the 2nd generation Grubbs catalysts) to increase the steric pressure of C60 in the first sphere of reactivity of the metal. The DFT calculated thermodynamics and the kinetics of SIMes-derived systems show that they are efficient catalysts for olefin metathesis.
Collapse
Affiliation(s)
- Juan Pablo Martínez
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, Campus Montilivi, 17071 Catalonia, Girona, Spain
| | - Miquel Solà
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, Campus Montilivi, 17071 Catalonia, Girona, Spain
| | - Albert Poater
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, Campus Montilivi, 17071 Catalonia, Girona, Spain
| |
Collapse
|