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Singh R, Caseys C, Kliebenstein DJ. Genetic and molecular landscapes of the generalist phytopathogen Botrytis cinerea. MOLECULAR PLANT PATHOLOGY 2024; 25:e13404. [PMID: 38037862 PMCID: PMC10788480 DOI: 10.1111/mpp.13404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 10/13/2023] [Accepted: 10/24/2023] [Indexed: 12/02/2023]
Abstract
Botrytis cinerea Pers. Fr. (teleomorph: Botryotinia fuckeliana) is a necrotrophic fungal pathogen that attacks a wide range of plants. This updated pathogen profile explores the extensive genetic diversity of B. cinerea, highlights the progress in genome sequencing, and provides current knowledge of genetic and molecular mechanisms employed by the fungus to attack its hosts. In addition, we also discuss recent innovative strategies to combat B. cinerea. TAXONOMY Kingdom: Fungi, phylum: Ascomycota, subphylum: Pezizomycotina, class: Leotiomycetes, order: Helotiales, family: Sclerotiniaceae, genus: Botrytis, species: cinerea. HOST RANGE B. cinerea infects almost all of the plant groups (angiosperms, gymnosperms, pteridophytes, and bryophytes). To date, 1606 plant species have been identified as hosts of B. cinerea. GENETIC DIVERSITY This polyphagous necrotroph has extensive genetic diversity at all population levels shaped by climate, geography, and plant host variation. PATHOGENICITY Genetic architecture of virulence and host specificity is polygenic using multiple weapons to target hosts, including secretory proteins, complex signal transduction pathways, metabolites, and mobile small RNA. DISEASE CONTROL STRATEGIES Efforts to control B. cinerea, being a high-diversity generalist pathogen, are complicated. However, integrated disease management strategies that combine cultural practices, chemical and biological controls, and the use of appropriate crop varieties will lessen yield losses. Recently, studies conducted worldwide have explored the potential of small RNA as an efficient and environmentally friendly approach for combating grey mould. However, additional research is necessary, especially on risk assessment and regulatory frameworks, to fully harness the potential of this technology.
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Affiliation(s)
- Ritu Singh
- Department of Plant ScienceUniversity of CaliforniaDavisCaliforniaUSA
| | - Celine Caseys
- Department of Plant ScienceUniversity of CaliforniaDavisCaliforniaUSA
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Nielsen KAG, Skårn MN, Talgø V, Pettersson M, Fløistad IS, Strømeng GM, Brurberg MB, Stensvand A. Fungicide-Resistant Botrytis in Forest Nurseries May Impact Disease Control in Norway Spruce. PLANT DISEASE 2024; 108:139-148. [PMID: 37578357 DOI: 10.1094/pdis-01-23-0037-re] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/15/2023]
Abstract
Gray mold, caused by Botrytis spp., is a serious problem in Norway spruce seedling production in forest nurseries. From 2013 to 2019, 125 isolates of Botrytis were obtained from eight forest nurseries in Norway: 53 from Norway spruce seedlings, 16 from indoor air, 52 from indoor surfaces, and four from weeds growing close to seedlings. The majority of isolates were identified as B. cinerea, and over 60% of these were characterized as Botrytis group S. B. pseudocinerea isolates were obtained along with isolates with DNA sequence similarities to B. prunorum. Fungicide resistance was assessed with a mycelial growth assay, and resistance was found for the following: boscalid (8.8%), fenhexamid (33.6%), fludioxonil (17.6%), pyraclostrobin (36.0%), pyrimethanil (13.6%), and thiophanate-methyl (50.4%). Many isolates (38.4%) were resistant to two to six different fungicides. A selection of isolates was analyzed for the presence of known resistance-conferring mutations in the cytb, erg27, mrr1, sdhB, and tubA genes, and mutations leading to G143A, F412S, ΔL497, H272R, and E198A/F200Y were detected, respectively. Detection of fungicide resistance in Botrytis from Norway spruce and forest nursery facilities reinforces the necessity of employing resistance management strategies to improve control and delay development of fungicide resistance in the gray mold pathogens.[Formula: see text] Copyright © 2024 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
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Affiliation(s)
- Katherine Ann Gredvig Nielsen
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås 1431, Norway
- Department of Plant Sciences (IPV), Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), Ås 1432, Norway
| | - Magne Nordang Skårn
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås 1431, Norway
| | - Venche Talgø
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås 1431, Norway
| | - Martin Pettersson
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås 1431, Norway
| | - Inger Sundheim Fløistad
- Division of Forest and Forest Resources, Norwegian Institute of Bioeconomy Research (NIBIO), Ås 1431, Norway
| | - Gunn Mari Strømeng
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås 1431, Norway
| | - May Bente Brurberg
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås 1431, Norway
- Department of Plant Sciences (IPV), Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), Ås 1432, Norway
| | - Arne Stensvand
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås 1431, Norway
- Department of Plant Sciences (IPV), Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), Ås 1432, Norway
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Naegele RP, Abdelsamad N, DeLong JA, Saito S, Xiao CL, Miles TD. Fungicide Resistance and Host Influence on Population Structure in Botrytis spp. from Specialty Crops in California. PHYTOPATHOLOGY 2022; 112:2549-2559. [PMID: 35801851 DOI: 10.1094/phyto-03-22-0070-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Botrytis is an important genus of plant pathogens causing pre- and postharvest disease on diverse crops worldwide. This study evaluated Botrytis isolates collected from strawberry, blueberry, and table grape berries in California. Isolates were evaluated for resistance to eight different fungicides, and 60 amplicon markers were sequenced (neutral, species identification, and fungicide resistance associated) distributed across 15 of the 18 B. cinerea chromosomes. Fungicide resistance was common among the populations, with resistance to pyraclostrobin and boscalid being most frequent. Isolates from blueberry had resistance to the least number of fungicides, whereas isolates from strawberry had resistance to the highest number. Host and fungicide resistance-specific population structure explained 12 and 7 to 26%, respectively, of the population variability observed. Fungicide resistance was the major driver for population structure, with select fungicides explaining up to 26% and multiple fungicide resistance explaining 17% of the variability observed. Shared and unique significant single-nucleotide polymorphisms (SNPs) associated with host and fungicide (fluopyram, thiabendazole, pyraclostrobin, and fenhexamid) resistance-associated population structures were identified. Although overlap between host and fungicide resistance SNPs were detected, unique SNPs suggest that both host and fungicide resistance play an important role in Botrytis population structure.
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Affiliation(s)
- Rachel P Naegele
- U.S. Department of Agriculture-Agricultural Research Service, 9611 S. Riverbend Ave., Parlier, CA 93648
| | - Noor Abdelsamad
- U.S. Department of Agriculture-Agricultural Research Service, 9611 S. Riverbend Ave., Parlier, CA 93648
| | - Jeff A DeLong
- U.S. Department of Agriculture-Agricultural Research Service, 9611 S. Riverbend Ave., Parlier, CA 93648
| | - Seiya Saito
- U.S. Department of Agriculture-Agricultural Research Service, 9611 S. Riverbend Ave., Parlier, CA 93648
| | - Chang-Lin Xiao
- U.S. Department of Agriculture-Agricultural Research Service, 9611 S. Riverbend Ave., Parlier, CA 93648
| | - Timothy D Miles
- Michigan State University, Plant Pathology, 426 Auditorium Road, East Lansing, MI 48824
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Notte AM, Plaza V, Marambio-Alvarado B, Olivares-Urbina L, Poblete-Morales M, Silva-Moreno E, Castillo L. Molecular identification and characterization of Botrytis cinerea associated to the endemic flora of semi-desert climate in Chile. CURRENT RESEARCH IN MICROBIAL SCIENCES 2021; 2:100049. [PMID: 34841340 PMCID: PMC8610304 DOI: 10.1016/j.crmicr.2021.100049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2021] [Revised: 07/19/2021] [Accepted: 07/20/2021] [Indexed: 11/23/2022] Open
Abstract
For the first time was detected the presence of B. cinerea on fourteen new host plant. We provide evidence for phenotype and genotype diversity in these B. cinerea isolates, where 83.3% of the isolates presented both transposable elements, boty and flipper. We found in this study, that some isolates of this fungus lose the ability to produce conidia or sclerotia formation and revealed a great diversity among the isolates concerning both features. The 16.6% of the isolates of B. cinerea showed substantially reduced virulence. According to fungicide resistance studies the results indicate that resistance to Fenhexamid or Boscalid was observed in the 22.6% of isolates. These findings are of great epidemiological importance to several regions, because of the distribution and the possible ecological impact of this disease on native and endemic plants in Chile.
Botrytis cinerea is a phytopathogenic fungus that infects over 200 plant species and can cause significant crop losses in local and worldwide agricultural industries. However, its presence in the endemic flora in the Coquimbo Region and its impact on local flora have not been studied yet. In order to determine whether Botrytis spp is present in the native plant in the Coquimbo Region, fifty-two field-samples were analysed. A total of 30 putative Botrytis spp were isolated and phenotypic and genetically characterized. The internal transcribed spacer (ITS) analysis of these isolates revealed that it corresponded to genus Botrytis. For further confirmation, nuclear protein-coding genes (G3PDH, HSP60, and RPB2) were sequenced and showed 100% identity against B. cinerea. Complementary to this, Botrytis can also be clustered in two different groups, group I (B. pseudocinerea) and group II (B. cinerea), based on DNA polymorphism, the Botrytis isolates were identified as member of group II. On the order hand, we investigated the presence and frequency distribution of the transposable elements boty and flipper in the isolates obtained. The results indicate that 83.3% of the isolates presented both transposable elements, boty and flipper, indicating that the most prevalent genotype was transpose. In addition, 16.6% of the isolates showed substantially reduced virulence in apple fruit in comparison to B05.10 strain. According to fungicide resistance studies, the results indicate that resistance to Fenhexamid or Boscalid was observed in the 22.6% of isolates. The results show for the first time that B. cinerea has not been described before in fourteen new host plants and contributes to our fundamental understanding of the presence of B. cinerea in the native plant in the Coquimbo Region and the possible ecological impact of this disease on native and endemic plants.
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Affiliation(s)
- Ana-Maria Notte
- Laboratorio de Biología Molecular y Bioquímica, Departamento de Biología, Universidad de La Serena, Facultad de Ciencias, La Serena, Chile
| | - Verónica Plaza
- Laboratorio de Biología Molecular y Bioquímica, Departamento de Biología, Universidad de La Serena, Facultad de Ciencias, La Serena, Chile
| | - Bárbara Marambio-Alvarado
- Laboratorio de Biología Molecular y Bioquímica, Departamento de Biología, Universidad de La Serena, Facultad de Ciencias, La Serena, Chile
| | - Lila Olivares-Urbina
- Laboratorio de Biología Molecular y Bioquímica, Departamento de Biología, Universidad de La Serena, Facultad de Ciencias, La Serena, Chile
| | | | - Evelyn Silva-Moreno
- Instituto de Ciencias Biomédicas, Universidad Autónoma de Chile, Santiago, Chile.,Instituto de Investigaciones Agropecuarias, INIA-La Platina, Santiago, Chile
| | - Luis Castillo
- Laboratorio de Biología Molecular y Bioquímica, Departamento de Biología, Universidad de La Serena, Facultad de Ciencias, La Serena, Chile
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Naegele RP, DeLong J, Alzohairy SA, Saito S, Abdelsamad N, Miles TD. Population Genetic Analyses of Botrytis cinerea Isolates From Michigan Vineyards Using a High-Throughput Marker System Approach. Front Microbiol 2021; 12:660874. [PMID: 33959117 PMCID: PMC8093758 DOI: 10.3389/fmicb.2021.660874] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 03/09/2021] [Indexed: 11/29/2022] Open
Abstract
As sequencing costs continue to decrease, new tools are being developed for assessing pathogen diversity and population structure. Traditional marker types, such as microsatellites, are often more cost effective than single-nucleotide polymorphism (SNP) panels when working with small numbers of individuals, but may not allow for fine scale evaluation of low or moderate structure in populations. Botrytis cinerea is a necrotrophic plant pathogen with high genetic variability that can infect more than 200 plant species worldwide. A panel of 52 amplicons were sequenced for 82 isolates collected from four Michigan vineyards representing 2 years of collection and varying fungicide resistance. A panel of nine microsatellite markers previously described was also tested across 74 isolates from the same population. A microsatellite and SNP marker analysis of B. cinerea populations was performed to assess the genetic diversity and population structure of Michigan vineyards, and the results from both marker types were compared. Both methods were able to detect population structure associated with resistance to the individual fungicides thiabendazole and boscalid, and multiple fungicide resistance (MFR). Microsatellites were also able to differentiate population structure associated with another fungicide, fluopyram, while SNPs were able to additionally differentiate structure based on year. For both methods, AMOVA results were similar, with microsatellite results explaining a smaller portion of the variation compared with the SNP results. The SNP-based markers presented here were able to successfully differentiate population structure similar to microsatellite results. These SNP markers represent new tools to discriminate B. cinerea isolates within closely related populations using multiple targeted sequences.
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Affiliation(s)
- Rachel P Naegele
- Crop Diseases, Pests and Genetics Unit, United States Department of Agriculture, Agricultural Research Service, San Joaquin Valley Agricultural Sciences Center, Parlier, CA, United States
| | - Jeff DeLong
- Crop Diseases, Pests and Genetics Unit, United States Department of Agriculture, Agricultural Research Service, San Joaquin Valley Agricultural Sciences Center, Parlier, CA, United States
| | - Safa A Alzohairy
- Small Fruit and Hop Pathology Laboratory, Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, United States
| | - Seiya Saito
- Commodity Protection and Quality Unit, United States Department of Agriculture, Agricultural Research Service, San Joaquin Valley Agricultural Sciences Center, Parlier, CA, United States
| | - Noor Abdelsamad
- Crop Diseases, Pests and Genetics Unit, United States Department of Agriculture, Agricultural Research Service, San Joaquin Valley Agricultural Sciences Center, Parlier, CA, United States
| | - Timothy D Miles
- Small Fruit and Hop Pathology Laboratory, Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, United States
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Azevedo DMQ, Martins SDS, Guterres DC, Martins MD, Araújo L, Guimarães LMS, Alfenas AC, Furtado GQ. Diversity, prevalence and phylogenetic positioning of Botrytis species in Brazil. Fungal Biol 2020; 124:940-957. [PMID: 33059846 DOI: 10.1016/j.funbio.2020.08.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2020] [Revised: 08/07/2020] [Accepted: 08/09/2020] [Indexed: 11/27/2022]
Abstract
Botrytis is a necrotrophic fungal genus of great economic importance worldwide. Together, the Botrytis species are able to infect over one thousand host plant species, including dicotyledons and monocotyledons. As the identification of Botrytis species in Brazil has mostly been based only on morphological characterization and comparisons of the rDNA ITS region, which is not informative in the genus, its diversity remains unknown. Thus, in this study we determined the diversity and prevalence of Botrytis spp. in Brazil by multilocus phylogeny. Phylogenetic reconstruction of the genus was performed using the nuclear genes glyceraldehyde-3-phosphate dehydrogenase (G3PDH), heat-shock protein 60 (HSP60) and RNA polymerase II second largest subunit (RPB2). From analyses of 56 Botrytis isolates obtained from different hosts and geographical regions in Brazil, we found that Botrytis cinerea is the most prevalent species with considerable intraspecific genetic diversity detected by nuclear genes. Two new hosts to B. cinerea and eight host never previously reported in Brazil were found. We also reported for the first time the occurrence of Botrytispseudocinerea associated with Accasellowiana (Myrtaceae). Due to the new phylogenetic positioning of Botrytispelargonii and Botrytiseucalypti, a taxonomic review of these species was suggested.
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Affiliation(s)
- Daiana M Q Azevedo
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, MG, Brazil.
| | - Sarah D S Martins
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, MG, Brazil.
| | - Débora C Guterres
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, MG, Brazil.
| | - Mateus D Martins
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, MG, Brazil.
| | - Leonardo Araújo
- Empresa de Pesquisa Agropecuária e Extensão Rural de Santa Catarina, 88600-000, São Joaquim, SC, Brazil.
| | - Lúcio M S Guimarães
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, MG, Brazil.
| | - Acelino C Alfenas
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, MG, Brazil.
| | - Gleiber Q Furtado
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, MG, Brazil.
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Chen X, Wang Y, Gao Y, Gao T, Zhang D. Inhibitory Abilities of Bacillus Isolates and Their Culture Filtrates against the Gray Mold Caused by Botrytis cinerea on Postharvest Fruit. THE PLANT PATHOLOGY JOURNAL 2019; 35:425-436. [PMID: 31632218 PMCID: PMC6788410 DOI: 10.5423/ppj.oa.03.2019.0064] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2019] [Revised: 07/10/2019] [Accepted: 07/18/2019] [Indexed: 05/30/2023]
Abstract
Botrytis cinerea, a major phytopathogenic fungus, has been reported to infect more than 200 crop species worldwide, and it causes massive losses in yield. The aim of this study was to evaluate the inhibitory abilities and effects of Bacillus amyloliquefaciens RS-25, Bacillus licheniformis MG-4, Bacillus subtilis Z-14, and Bacillus subtilis Pnf-4 and their culture filtrates and extracts against the gray mold caused by B. cinerea on postharvest tomato, strawberry, and grapefruit. The results revealed that the cells of Z-14, culture filtrate of RS-25, and cells of Z-14 showed the strongest biocontrol activity against the gray mold on the strawberry, grape, and tomato fruit, respectively. All the strains produced volatile organic compounds (VOCs), and the VOCs of Pnf-4 displayed the highest inhibition values. Based on headspace solid-phase microextraction in combination with gas chromatography-mass spectrometry, esters accounted for the largest percentage of the VOCs produced by RS-25, MG-4, Z-14, and Pnf-4 (36.80%, 29.58%, 30.78%, and 36.26%, respectively). All the strains showed potent cellulase and protease activities, but no chitinase activity. RS-25, Z-14, and MG-4, but not Pnf-4, grew on chrome azurol S agar, and an orange halo was formed around the colonies. All the strains showed biofilm formation, fruit colonization, and lipopeptide production, which may be the main modes of action of the antagonists against B. cinerea on the fruit. This study provides the basis for developing natural biocontrol agents against the gray mold caused by B. cinerea on postharvest fruit.
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Affiliation(s)
| | | | | | | | - Dongdong Zhang
- Corresponding author.: Phone) +86-3127528273, FAX) +86-3127528273, E-mail)
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Baggio JS, Peres NA, Amorim L. Sensitivity of Botrytis cinerea Isolates from Conventional and Organic Strawberry Fields in Brazil to Azoxystrobin, Iprodione, Pyrimethanil, and Thiophanate-Methyl. PLANT DISEASE 2018; 102:1803-1810. [PMID: 30125196 DOI: 10.1094/pdis-08-17-1221-re] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Botrytis fruit rot, caused by Botrytis cinerea, is one of the most important strawberry diseases worldwide, and fungicide applications are often used to manage the disease in commercial production. Isolates of B. cinerea were collected from conventional and organic strawberry fields in four Brazilian States from 2013 to 2015 and their sensitivity to the main single-site mode-of action fungicides used in Brazil was tested. Resistance to azoxystrobin, iprodione, pyrimethanil, and thiophanate-methyl was found and values for effective concentration that inhibited mycelial growth by 50% were higher than 71.9, 1.2, 5.0, and 688 µg/ml, respectively, regardless the production system. Resistance to these fungicides was observed in 87.5, 76.6, 23.4, and 92.2% of isolates from conventional fields and 31.4, 22.9, 14.3, and 51.4% of isolates from organic fields, respectively. Moreover, frequencies of isolates with multiple fungicide resistance to the four active ingredients were 20.6 and 2.8% whereas 6.3 and 27.8% were sensitive to the four fungicides for conventional and organic areas, respectively. Molecular analyses of the cytochrome b, β-tubulin, and bos1 genes revealed the presence of G143A; E198A; and I365 N/S, Q369P, or N373S mutations, respectively, in resistant isolates of B. cinerea. Field rates of fungicides sprayed preventively to inoculated strawberry fruit failed to control disease caused by the respective resistant isolates.
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Affiliation(s)
- Juliana S Baggio
- Departamento de Fitopatologia, ESALQ, University of Sao Paulo, CEP 13418-900, Piracicaba, SP, Brazil
| | - Natalia A Peres
- Gulf Coast Research and Education Center, University of Florida, Wimauma
| | - Lilian Amorim
- Departmento de Fitopatologia, ESALQ, University of São Paulo, CEP 13418-900 Piracicaba, SP, Brazil
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Polat İ, Baysal Ö, Mercati F, Gümrükcü E, Sülü G, Kitapcı A, Araniti F, Carimi F. Characterization of Botrytis cinerea isolates collected on pepper in Southern Turkey by using molecular markers, fungicide resistance genes and virulence assay. INFECTION GENETICS AND EVOLUTION 2018; 60:151-159. [PMID: 29505818 DOI: 10.1016/j.meegid.2018.02.019] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2016] [Revised: 01/30/2018] [Accepted: 02/13/2018] [Indexed: 11/18/2022]
Abstract
Botrytis cinerea is a polyphagous fungal pathogen causing gray mold disease. Moreover, it is one of the most destructive infections of small fruit crops such as pepper (Capsicum annnum L.). C. sativum is a species belonging to the Solanaceae family and Turkey is one of the main producers in the World. In the present work, aiming to obtain information useful for pest management, fifty B. cinerea isolates collected from Turkey and a reference isolate (B05.10) were characterized using molecular markers and fungicide resistance genes. Morphological and molecular (ITS1-ITS4) identification of B. cinerea isolates, the degree of virulence and mating types were determined. Since one or several allelic mutations in the histidine kinase (Bos1) and β-tubulin genes generally confer the resistance to fungicides, the sequences of these target genes were investigated in the selected isolates, which allowed the identification of two different haplotypes. Mating types were also determined by PCR assays using primer specific for MAT1-1 alpha gene (MAT1-1-1) and MAT1-2 HMG (MAT1-2-1) of B. cinerea. Twenty-two out of 50 isolates (44%) were MAT1-2, while 38% were MAT1-1. Interestingly, out of whole studied samples, 9 isolates (18%) were heterokaryotic or mixed colonies. In addition, cluster and population structure analyses identified five main groups and two genetic pools, respectively, underlining a good level of variability in the analysed panel. The results highlighted the presence of remarkable genetic diversity in B. cinerea isolates collected in a crucial economical area for pepper cultivation in Turkey and the data will be beneficial in view of future gray mold disease management.
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Affiliation(s)
- İlknur Polat
- Batı Akdeniz Agricultural Research Institute, Antalya, Turkey
| | - Ömür Baysal
- Muğla Sıtkı Koçman University, Faculty of Science, Department of Molecular Biology and Genetics, 48000 Muğla, Turkey.
| | - Francesco Mercati
- Institute of Biosciences and Bioresources (IBBR), National Research Council of Italy (CNR), Palermo, Italy
| | - Emine Gümrükcü
- Batı Akdeniz Agricultural Research Institute, Antalya, Turkey
| | - Görkem Sülü
- Batı Akdeniz Agricultural Research Institute, Antalya, Turkey
| | - Aytül Kitapcı
- Batı Akdeniz Agricultural Research Institute, Antalya, Turkey
| | - Fabrizio Araniti
- Mediterranean University of Reggio Calabria, Reggio Calabria, Italy
| | - Francesco Carimi
- Institute of Biosciences and Bioresources (IBBR), National Research Council of Italy (CNR), Palermo, Italy
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Kaan Selvi A, Delen N, Gencer R, Kinay Teksür P. Sensivity against some fungicides and molecular characterization of Botrytis cinerea isolates on grapes in Aegean region. ACTA ACUST UNITED AC 2016. [DOI: 10.17660/actahortic.2016.1144.41] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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González-Domínguez E, Caffi T, Ciliberti N, Rossi V. A Mechanistic Model of Botrytis cinerea on Grapevines That Includes Weather, Vine Growth Stage, and the Main Infection Pathways. PLoS One 2015; 10:e0140444. [PMID: 26457808 PMCID: PMC4601735 DOI: 10.1371/journal.pone.0140444] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2015] [Accepted: 09/25/2015] [Indexed: 11/19/2022] Open
Abstract
A mechanistic model for Botrytis cinerea on grapevine was developed. The model, which accounts for conidia production on various inoculum sources and for multiple infection pathways, considers two infection periods. During the first period ("inflorescences clearly visible" to "berries groat-sized"), the model calculates: i) infection severity on inflorescences and young clusters caused by conidia (SEV1). During the second period ("majority of berries touching" to "berries ripe for harvest"), the model calculates: ii) infection severity of ripening berries by conidia (SEV2); and iii) severity of berry-to-berry infection caused by mycelium (SEV3). The model was validated in 21 epidemics (vineyard × year combinations) between 2009 and 2014 in Italy and France. A discriminant function analysis (DFA) was used to: i) evaluate the ability of the model to predict mild, intermediate, and severe epidemics; and ii) assess how SEV1, SEV2, and SEV3 contribute to epidemics. The model correctly classified the severity of 17 of 21 epidemics. Results from DFA were also used to calculate the daily probabilities that an ongoing epidemic would be mild, intermediate, or severe. SEV1 was the most influential variable in discriminating between mild and intermediate epidemics, whereas SEV2 and SEV3 were relevant for discriminating between intermediate and severe epidemics. The model represents an improvement of previous B. cinerea models in viticulture and could be useful for making decisions about Botrytis bunch rot control.
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Affiliation(s)
- Elisa González-Domínguez
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore, Piacenza, Italy
| | - Tito Caffi
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore, Piacenza, Italy
| | - Nicola Ciliberti
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore, Piacenza, Italy
| | - Vittorio Rossi
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore, Piacenza, Italy
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Plesken C, Weber RWS, Rupp S, Leroch M, Hahn M. Botrytis pseudocinerea Is a Significant Pathogen of Several Crop Plants but Susceptible to Displacement by Fungicide-Resistant B. cinerea Strains. Appl Environ Microbiol 2015; 81:7048-56. [PMID: 26231644 PMCID: PMC4579457 DOI: 10.1128/aem.01719-15] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2015] [Accepted: 07/26/2015] [Indexed: 11/20/2022] Open
Abstract
Botrytis cinerea is one of the most important pathogens worldwide, causing gray mold on a large variety of crops. Botrytis pseudocinerea has been found previously to occur together with B. cinerea in low abundance in vineyards and strawberry fields. Here, we report B. pseudocinerea to be common and sometimes dominant over B. cinerea on several fruit and vegetable crops in Germany. On apples with calyx end rot and on oilseed rape, it was the major gray mold species. Abundance of B. pseudocinerea was often negatively correlated with fungicide treatments. On cultivated strawberries, it was frequently found in spring but was largely displaced by B. cinerea following fungicide applications. Whereas B. cinerea strains with multiple-fungicide resistance were common in these fields, B. pseudocinerea almost never developed resistance to any fungicide even though resistance mutations occurred at similar frequencies in both species under laboratory conditions. The absence of resistance to quinone outside inhibitors in B. pseudocinerea was correlated with an intron in cytB preventing the major G143A resistance mutation. Our work indicates that B. pseudocinerea has a wide host range similar to that of B. cinerea and that it can become an important gray mold pathogen on cultivated plants.
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Affiliation(s)
- Cecilia Plesken
- Department of Biology, University of Kaiserslautern, Kaiserslautern, Germany
| | - Roland W S Weber
- Esteburg Fruit Research and Advisory Centre, Jork, Germany Department of Food Science, Aarhus University, Årslev, Denmark
| | - Sabrina Rupp
- Department of Biology, University of Kaiserslautern, Kaiserslautern, Germany
| | - Michaela Leroch
- Department of Biology, University of Kaiserslautern, Kaiserslautern, Germany
| | - Matthias Hahn
- Department of Biology, University of Kaiserslautern, Kaiserslautern, Germany
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Ciliberti N, Fermaud M, Roudet J, Rossi V. Environmental Conditions Affect Botrytis cinerea Infection of Mature Grape Berries More Than the Strain or Transposon Genotype. PHYTOPATHOLOGY 2015. [PMID: 26218433 DOI: 10.1094/phyto-10-14-0264-r] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Effects of environment, Botrytis cinerea strain, and their interaction on the infection of mature grape berries were investigated. The combined effect of temperature (T) of 15, 20, 25, and 30°C and relative humidity (RH) of 65, 80, 90, and 100% was studied by inoculating berries with mycelium plugs. Regardless of the T, no disease occurred at 65% RH, and both disease incidence and severity increased with increasing RH. The combined effect of T (5 to 30°C) and wetness duration (WD) of 3, 6, 12, 24, and 36 h was studied by inoculating berries with conidia. At WD of 36 h, disease incidence was approximately 75% of affected berries at 20 or 25°C, 50% at 15°C, and 30 to 20% at 30 and 10°C; no infection occurred at 5°C. Under favorable conditions (100% RH or 36 h of WD) and unfavorable conditions (65% RH or 3 h of WD), berry wounding did not significantly affect disease incidence; under moderately favorable conditions (80% RH or 6 to 12 h of WD), disease incidence was approximately 1.5 to 5 times higher in wounded than in intact berries. Our data collectively showed that (i) T and RH or WD were more important than strain for mature berry infection by either mycelium or conidia and (ii) the effect of the environment on the different strains was similar. Two equations were developed describing the combined effect of T and RH, or T and WD, on disease incidence following inoculation by mycelium (R2=0.99) or conidia (R2=0.96), respectively. These equations may be useful in the development of models used to predict and control Botrytis bunch rot during berry ripening.
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Affiliation(s)
- Nicola Ciliberti
- First and fourth authors: Istituto di Entomologia e Patologia Vegetale, Università Cattolica del Sacro Cuore, Via E. Parmense 84, Piacenza, I-29122, Italy; second and third authors: INRA, UMR 1065 SAVE "Santé et Agroécologie du Vignoble", ISVV, Université de Bordeaux, CS 20032, 33882 Villenave d'Ornon Cédèx, France
| | - Marc Fermaud
- First and fourth authors: Istituto di Entomologia e Patologia Vegetale, Università Cattolica del Sacro Cuore, Via E. Parmense 84, Piacenza, I-29122, Italy; second and third authors: INRA, UMR 1065 SAVE "Santé et Agroécologie du Vignoble", ISVV, Université de Bordeaux, CS 20032, 33882 Villenave d'Ornon Cédèx, France
| | - Jean Roudet
- First and fourth authors: Istituto di Entomologia e Patologia Vegetale, Università Cattolica del Sacro Cuore, Via E. Parmense 84, Piacenza, I-29122, Italy; second and third authors: INRA, UMR 1065 SAVE "Santé et Agroécologie du Vignoble", ISVV, Université de Bordeaux, CS 20032, 33882 Villenave d'Ornon Cédèx, France
| | - Vittorio Rossi
- First and fourth authors: Istituto di Entomologia e Patologia Vegetale, Università Cattolica del Sacro Cuore, Via E. Parmense 84, Piacenza, I-29122, Italy; second and third authors: INRA, UMR 1065 SAVE "Santé et Agroécologie du Vignoble", ISVV, Université de Bordeaux, CS 20032, 33882 Villenave d'Ornon Cédèx, France
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14
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Muñoz G, Campos F, Salgado D, Galdames R, Gilchrist L, Chahin G, Andrade O. Molecular identification of Botrytis cinerea, Botrytis paeoniae and Botrytis pseudocinerea associated with gray mould disease in peonies (Paeonia lactiflora Pall.) in Southern Chile. Rev Iberoam Micol 2015; 33:43-7. [PMID: 25982419 DOI: 10.1016/j.riam.2015.02.002] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2014] [Revised: 01/22/2015] [Accepted: 02/03/2015] [Indexed: 11/28/2022] Open
Abstract
BACKGROUND In Chile, the peony is the most important ornamental flower exported from the country. Gray mould is a phytopathological problem of this crop. This disease is caused by Botrytis cinerea and Botrytis paeoniae. AIMS We carried out the first survey of Botrytis species associated with peony gray mould in Southern Chile to estimate the diversity of these pathogens. METHODS Diseased peony leaves were collected from seven locations in Southern Chile covering a distance of 300km. The Botrytis isolates obtained were studied by morphological and molecular methods. Finally, a PCR assay using primers based on the necrosis and ethylene-inducing protein gene (nep1) was used to specifically identify B. paeoniae. RESULTS Seventeen isolates belonging to Botrytis genus were obtained, and all of them were pathogenic to peonies when inoculated in plants grown in a greenhouse. Morphological analyses showed that four isolates shared common characteristics, which distinguish them from the rest. Homology and phylogenetic analysis of G3PDH, as well as determination of the Bc-hch allele, allowed us to identify 12 isolates as B. cinerea, 4 as B. paeoniae and one isolate as Botrytis pseudocinerea. The PCR assay was found to be specific to B. paeoniae, amplifying a single band of 470bp. CONCLUSIONS Three Botrytis species involved in peony gray mould disease are present in Chile. This is the first time that both B. paeoniae and B. pseudocinerea have been reported to be present in the country and also that they affect peonies. Finally, to our knowledge, the PCR based method herein described is the first of its kind to be used to identify B. paeoniae.
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Affiliation(s)
- Gastón Muñoz
- Facultad de Ciencias Biológicas, Universidad Andrés Bello, Talcahuano, Chile.
| | - Felipe Campos
- Facultad de Ciencias Biológicas, Universidad Andrés Bello, Talcahuano, Chile
| | - Daisy Salgado
- Instituto de Investigaciones Agropecuarias (INIA) Carillanca, Temuco, Chile
| | - Rafael Galdames
- Instituto de Investigaciones Agropecuarias (INIA) Carillanca, Temuco, Chile
| | - Lucy Gilchrist
- Instituto de Investigaciones Agropecuarias (INIA) Carillanca, Temuco, Chile
| | - Gabriela Chahin
- Instituto de Investigaciones Agropecuarias (INIA) Carillanca, Temuco, Chile
| | - Orlando Andrade
- Escuela de Agronomía, Facultad de Recursos Naturales, Universidad Católica de Temuco, Temuco, Chile
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Ciliberti N, Fermaud M, Languasco L, Rossi V. Influence of Fungal Strain, Temperature, and Wetness Duration on Infection of Grapevine Inflorescences and Young Berry Clusters by Botrytis cinerea. PHYTOPATHOLOGY 2015; 105:325-333. [PMID: 25354016 DOI: 10.1094/phyto-05-14-0152-r] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The effect of temperature and wetness duration on infection of Vitis vinifera inflorescences (from "inflorescence clearly visible" to "end of flowering" stages) and young berry clusters (at "fruit swelling" and "berries groat-sized" stages) by Botrytis cinerea was investigated. Artificial inoculations were carried out using conidial suspensions of eight B. cinerea strains belonging to the transposon genotypes transposa and vacuma. Infection incidence was significantly affected by strain but not by transposon genotype (transposon genotype accounted for only 6.5% of the variance). Infection incidence was also affected by the interaction between strain and growth stage of the inflorescence or berry cluster (overall accounting for approximately 57% of the experimental variance). Thus, under our experimental conditions, the ability to cause infection was a strain rather than a transposon genotype attribute. Across all strains, infection incidence was lowest when inflorescences were clearly visible or fully developed, highest at flowering (from beginning to end of flowering), and intermediate at the postflowering fruit stages (fruit swelling and berries groat-sized). One transposa strain, however, was highly virulent on all grapevine growth stages tested. The effects of temperature and wetness duration on infection incidence were similar for all fungal strains and grapevine growth stages; infection incidence was highest at 20°C and lowest at 30°C, and was also low at 5°C. Similar results were obtained for mycelial growth and conidial germination. Based on the pooled data for all strains and grapevine growth stages, an equation was developed that accounted for the combined effects of temperature and wetness duration on relative infection incidence. This equation should be useful for developing decision-making systems concerning B. cinerea control at early grapevine growth stages.
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16
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Abdel Wahab H. Characterization of Egyptian <i>Botrytis cinerea</i> Isolates from Different Host Plants. ACTA ACUST UNITED AC 2015. [DOI: 10.4236/aim.2015.53017] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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17
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Santana MF, Silva JCF, Mizubuti ESG, Araújo EF, Queiroz MV. Analysis of Tc1-Mariner elements in Sclerotinia sclerotiorum suggests recent activity and flexible transposases. BMC Microbiol 2014; 14:256. [PMID: 25281292 PMCID: PMC4188875 DOI: 10.1186/s12866-014-0256-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2014] [Accepted: 09/25/2014] [Indexed: 12/12/2022] Open
Abstract
Background Sclerotinia sclerotiorum is a necrotrophic fungus that is pathogenic to many plants. Genomic analysis of its revealed transposable element expansion that has strongly influenced the evolutionary trajectory of several species. Transposons from the Tc1-Mariner superfamily are thought to be ubiquitous components of fungal genomes and are generally found in low copy numbers with large numbers of deleterious mutations in their transposase coding sequence. Results This study shows that the genome of S. sclerotiorum has a large number of copies of Tc1-Mariner transposons, and in silico analysis shows evidence that they were recently active. This finding was confirmed by expressed sequence tag (EST) analysis. Fourteen new Tc1-Mariner transposon families that were distributed throughout the genome were identified, and in some cases, due to the excision/retention of introns, different transcripts were observed for the same family, which might be the result of an efficient strategy to circumvent mutations that generate premature stop codons in the RNA sequence. In addition, the presence of these introns shows that the transposase protein has a flexible coding sequence and, consequently, conformation. No evidence for RIP-like gene silencing mechanisms, which are commonly found in fungi, was found in the identified Tc1-Mariner elements, and analysis of the genomic insertion sites of these elements showed that they were widely distributed throughout the genome with some copies located near the 3′ regions of genes. In particular, EST analysis demonstrated that one of these copies was co-expressed with a gene, which showed the potential for these elements to undergo exaptation. Conclusions Fourteen novel Tc1-Mariner families were characterized. Some families had evidence of introns, which might or might not be excised depending on the family or element in question, and this finding demonstrates a possible strategy for overcoming possible mutations that generate premature stop codons in a RNA sequence. Tc1-Mariner elements likely play an important role in the structure and evolution of the S. sclerotiorum genome.
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18
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Udayanga D, Castlebury LA, Rossman AY, Chukeatirote E, Hyde KD. Insights into the genus Diaporthe: phylogenetic species delimitation in the D. eres species complex. FUNGAL DIVERS 2014. [DOI: 10.1007/s13225-014-0297-2] [Citation(s) in RCA: 144] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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19
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Bardin M, Decognet V, Nicot PC. Remarkable predominance of a small number of genotypes in greenhouse populations of Botrytis cinerea. PHYTOPATHOLOGY 2014; 104:859-864. [PMID: 24521484 DOI: 10.1094/phyto-10-13-0271-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Although Botrytis cinerea is known for its ability to produce high amounts of spores on diseased plants, enabling it to complete rapidly numerous developmental cycles in favorable environments, population genetics studies of this fungus indicate enormous diversity and limited clonal spread. Here, we report an exception to this situation in the settings of commercial tomato greenhouses. The genotypic characterization of 712 isolates collected from the air and from diseased plants, following the development of gray mold epidemics in four greenhouses in southern France, revealed the presence of a few predominant genotypes in a background of highly diverse populations. The comparison of genotypic profiles for isolates collected in the air or on the plants was compatible with the hypothesis of an entry in the greenhouse of substantial amounts of inoculum from the outside environment but it also highlighted the importance of secondary inoculum produced within the crop. The overall results of this work suggest that sporulation could be an important target for disease management strategies in the greenhouse.
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20
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Kumari S, Tayal P, Sharma E, Kapoor R. Analyses of genetic and pathogenic variability among Botrytis cinerea isolates. Microbiol Res 2014; 169:862-72. [PMID: 24767170 DOI: 10.1016/j.micres.2014.02.012] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2013] [Revised: 02/23/2014] [Accepted: 02/25/2014] [Indexed: 11/16/2022]
Abstract
Seventy nine isolates of Botrytis cinerea were collected from different host plants and different locations of India and Nepal. All the isolates were identified as B. cinerea based on morphological features and were confirmed using B. cinerea specific primers. Differentiation among the isolates was assessed using morphological, genetic and biochemical approaches. To analyze morphological variability, differences in conidial size, presence or absence of sclerotia and their arrangement were observed. Genetic variability was characterized using RAPD analysis, presence or absence of transposons and mating type genes. Cluster analysis based on RAPD markers was used for defining groups on the basis of geographical region and host. The biochemical approach included determining differences in concentration of oxalic acid and activity of lytic enzymes. All the isolates were categorized into different pathogenic groups on the basis their variable reaction towards chickpea plants. Isolates with higher concentration of oxalic acid and greater activity of lytic enzymes were generally more pathogenic. Pathogenicity was also correlated to transposons. Isolates containing transposa group showed some degree of correlation with pathogenic behavior. However, isolates could not be grouped on the basis of a single approach which provides evidence of their wide diversity and high evolution potential. Sensitivity of sampled isolates was also tested against five botryticides. Most of the isolates from same region were inhibited by a particular fungicide. This feature provided interesting cues and would assist in devising novel and more effective measures for managing the disease.
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Affiliation(s)
- Sarita Kumari
- Applied Mycology Laboratory, Department of Botany, University of Delhi, Delhi 110 007, India.
| | - Pamil Tayal
- Applied Mycology Laboratory, Department of Botany, University of Delhi, Delhi 110 007, India
| | - Esha Sharma
- Applied Mycology Laboratory, Department of Botany, University of Delhi, Delhi 110 007, India
| | - Rupam Kapoor
- Applied Mycology Laboratory, Department of Botany, University of Delhi, Delhi 110 007, India
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21
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Zhou YJ, Zhang J, Wang XD, Yang L, Jiang DH, Li GQ, Hsiang T, Zhuang WY. Morphological and phylogenetic identification of Botrytis sinoviticola, a novel cryptic species causing gray mold disease of table grapes (Vitis vinifera) in China. Mycologia 2014; 106:43-56. [PMID: 24396103 DOI: 10.3852/13-032] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Seventy-five isolates of Botrytis collected from table grapes (Vitis vinifera) with gray mold symptoms in China were identified based on morpho-cultural characteristics on potato dextrose agar (20 C) and/or phylogenetic analysis using the sequences of three nuclear genes (G3PDH, HSP60, RPB2). Isolates of different species of Botrytis were compared with fenhexamid sensitivity, Bc-hch gene-RFLP haplotyping and pathogenicity to V. vinifera. The 75 isolates comprise two species, B. cinerea (63 isolates) and an undescribed Botrytis sp. (12 isolates) described here as Botrytis sinoviticola Zhang et al. sp., nov. Both B. sinoviticola (Bs) and B. cinerea (Bc) were found to have 20 C optimum for mycelial growth and 25 C for conidial germination. Sensitivity to fenhexamid was significantly greater (P < 0.05) for Bc (EC50 = 0.04 ± 0.01 μg mL(-1)) than for Bs (EC50 = 0.08 ± 0.02 μg mL(-1)). Digestion of the PCR amplicons of the Bc-hch gene with Hha I generated two haplotypes, Group I haplotype for Bs and Group II haplotype for Bc. Bs infected table grapes (leaves, berries) only through wounds, whereas Bc infected both injured and non-injured tissues of table grapes. This study suggests that Bs is a cryptic species sympatric with Bc on table grapes in China.
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Affiliation(s)
- Y J Zhou
- State Key Laboratory of Agricultural Microbiology and Key Laboratory of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan 430070, China
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22
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Abstract
Botrytis cinerea (gray mold) is one of the most widespread and destructive fungal diseases of horticultural crops. Propagation and dispersal is usually by asexual conidia but the sexual stage (Botryotinia fuckeliana (de Bary) Whetzel) also occurs in nature. DsRNAs, indicative of virus infection, are common in B. cinerea, but only four viruses (Botrytis virus F (BVF), Botrytis virus X (BVX), Botrytis cinerea mitovirus 1 (BcMV1), and Botrytis porri RNA virus) have been sequenced. BVF and BVX are unusual mycoviruses being ssRNA flexous rods and have been designated the type species of the genera Mycoflexivirus and Botrexvirus (family Betaflexivirdae), respectively. The reported effects of viruses on Botrytis range from negligible to severe, with Botrytis cinerea mitovirus 1 causing hypovirulence. Little is currently known about the effects of viruses on Botrytis metabolism but recent complete sequencing of the B. cinerea genome now provides an opportunity to investigate the host-pathogen interactions at the molecular level. There is interest in the possible use of mycoviruses as biological controls for Botrytis because of the common problem of fungicide resistance. Unfortunately, hyphal anastomosis is the only known mechanism of horizontal virus transmission and the large number of vegetative incompatibility groups in Botrytis is a potential constraint on the spread of an introduced virus. Although some Botrytis viruses, such as BVF and BVX, are known to have international distribution, there is a distinct lack of epidemiological data and the means of spread are unknown.
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Affiliation(s)
- Michael N Pearson
- School of Biological Sciences, The University of Auckland, Auckland, New Zealand.
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Asadollahi M, Fekete E, Karaffa L, Flipphi M, Árnyasi M, Esmaeili M, Váczy KZ, Sándor E. Comparison of Botrytis cinerea populations isolated from two open-field cultivated host plants. Microbiol Res 2013; 168:379-388. [PMID: 23353014 DOI: 10.1016/j.micres.2012.12.008] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2012] [Revised: 12/04/2012] [Accepted: 12/20/2012] [Indexed: 11/17/2022]
Abstract
The necrotrophic fungus Botrytis cinerea is reported to infect more than 220 host plants worldwide. In phylogenetical-taxonomical terms, the pathogen is considered a complex of two cryptic species, group I and group II. We sampled populations of B. cinerea on sympatric strawberry and raspberry cultivars in the North-East of Hungary for three years during flowering and the harvest period. Four hundred and ninety group II B. cinerea isolates were analyzed for the current study. Three different data sets were generated: (i) PCR-RFLP patterns of the ADP-ATP translocase and nitrate reductase genes, (ii) MSB1 minisatellite sequence data, and (iii) the fragment sizes of five microsatellite loci. The structures of the different populations were similar as indicated by Nei's gene diversity and haplotype diversity. The F statistics (Fst, Gst), and the gene flow indicated ongoing differentiation within sympatric populations. The population genetic parameters were influenced by polymorphisms within the three data sets as assessed using Bayesian algorithms. Data Mining analysis pointed towards the five microsatellite loci as the most defining markers to study differentiation in the 490 isolates. The results suggest the occurrence of host-specific, sympatric divergence of generalist phytoparasites in perennial hosts.
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Affiliation(s)
- Mojtaba Asadollahi
- Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, 4032 Debrecen, Hungary; Institute of Food Processing, Quality Assurance and Microbiology, Faculty of Agricultural and Food Sciences and Environmental Management, University of Debrecen, Böszörményi út 138, 4032 Debrecen, Hungary
| | - Erzsébet Fekete
- Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, 4032 Debrecen, Hungary
| | - Levente Karaffa
- Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, 4032 Debrecen, Hungary
| | - Michel Flipphi
- Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, 4032 Debrecen, Hungary
| | - Mariann Árnyasi
- Sámuel Diószegi Institute of Agricultural Innovation, Faculty of Agricultural and Food Sciences and Environmental Management, University of Debrecen, Böszörményi út 138, 4032 Debrecen, Hungary
| | - Mahdi Esmaeili
- Department of Computer Science, Islamic Azad University, Kashan Branch, Kashan, Iran
| | - Kálmán Zoltán Váczy
- KRC Research Institute for Viticulture and Enology, Kőlyuktető, PO Box 83, 3301 Eger, Hungary
| | - Erzsébet Sándor
- Institute of Food Processing, Quality Assurance and Microbiology, Faculty of Agricultural and Food Sciences and Environmental Management, University of Debrecen, Böszörményi út 138, 4032 Debrecen, Hungary.
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