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Osman NA, Soltan MK, Rezq S, Flaherty J, Romero DG, Abdelkhalek AS. Dual COX-2 and 15-LOX inhibition study of novel 4-arylidine-2-mercapto-1-phenyl-1H-imidazolidin-5(4H)-ones: Design, synthesis, docking, and anti-inflammatory activity. Arch Pharm (Weinheim) 2024; 357:e2300615. [PMID: 38315093 PMCID: PMC11073913 DOI: 10.1002/ardp.202300615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2023] [Revised: 12/12/2023] [Accepted: 01/10/2024] [Indexed: 02/07/2024]
Abstract
Novel arylidene-5(4H)-imidazolone derivatives 4a-r were designed and evaluated as multidrug-directed ligands, that is, inflammatory, proinflammatory mediators, and reactive oxygen species (ROS) inhibitors. All of the tested compounds showed cyclooxygenase (COX)-1 inhibitory effect more than celecoxib and less than indomethacin and also demonstrated an improved inhibitory activity against 15-lipoxygenase (15-LOX). Compounds 4f, 4l, and 4p exhibited COX-2 selectivity comparable to that of celecoxib, while 4k was the most selective COX-2 inhibitor. Interestingly, the screened results showed that compound 4k exhibited a superior inhibition effect against 15-LOX and was found to be the most selective COX-2 inhibitor over celecoxib, whereas compound 4f showed promising COX-2 and 15-LOX inhibitory activities besides its inhibitory effect against ROS production and its lowering effect of both tumor necrosis factor-α and interleukin-6 levels by ∼80%. Moreover, compound 4f attenuated the lipopolysaccharide-mediated increase in NF-κB activation in RAW 264.7 macrophages. The preferred binding affinity of these molecules was confirmed by docking studies. We conclude that arylidene-5(4H)-imidazolone scaffolds provide promising hits for developing new synthons with anti-inflammatory and antioxidant activities.
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Affiliation(s)
- Nermine A. Osman
- Department of Pharmaceutical Organic Chemistry, Faculty of Pharmacy, Zagazig University, Zagazig, Egypt
| | - Mostafa K. Soltan
- Department of Medicinal Chemistry, Faculty of Pharmacy, Zagazig University, Zagazig, Egypt
- Oman College of Health Sciences, Muscat, Sultanate Oman
| | - Samar Rezq
- Department of Pharmacology and Toxicology, Faculty of Pharmacy, Zagazig University, Zagazig, Egypt
- Department of Pharmacology and Toxicology, University of Mississippi Medical Center, Jackson, MS, USA
- Mississippi Center of Excellence in Perinatal Research, University of Mississippi Medical Center, Jackson, MS, USA
- Women’s Health Research Center, University of Mississippi Medical Center, Jackson, MS, USA
- Cardiovascular-Renal Research Center, University of Mississippi Medical Center, Jackson, MS, USA
| | - Joseph Flaherty
- Department of Pharmacology and Toxicology, University of Mississippi Medical Center, Jackson, MS, USA
- Mississippi Center of Excellence in Perinatal Research, University of Mississippi Medical Center, Jackson, MS, USA
- Women’s Health Research Center, University of Mississippi Medical Center, Jackson, MS, USA
- Cardiovascular-Renal Research Center, University of Mississippi Medical Center, Jackson, MS, USA
| | - Damian G. Romero
- Department of Pharmacology and Toxicology, University of Mississippi Medical Center, Jackson, MS, USA
- Mississippi Center of Excellence in Perinatal Research, University of Mississippi Medical Center, Jackson, MS, USA
- Women’s Health Research Center, University of Mississippi Medical Center, Jackson, MS, USA
- Cardiovascular-Renal Research Center, University of Mississippi Medical Center, Jackson, MS, USA
| | - Ahmed S. Abdelkhalek
- Department of Medicinal Chemistry, Faculty of Pharmacy, Zagazig University, Zagazig, Egypt
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Mohamed SK, Siddique SA, Karthikeyan S, Ahmed EA, Omran OA, Mague JT, Al-Salahi R, El Bakri Y. Synthesis, X-ray crystallography, computational investigation on quinoxaline derivatives as potent against adenosine receptor A2AAR. J Biomol Struct Dyn 2024:1-19. [PMID: 38385483 DOI: 10.1080/07391102.2024.2314268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 01/28/2024] [Indexed: 02/23/2024]
Abstract
Quinoxaline represents one of the most important classes of heterocyclic compounds, which have exhibited a wide range of biological activities and industrial importance in many different fields. In this regard, we have synthetized two new quinoxaline derivatives. Their structures were confirmed by single-crystal X-ray analysis. The compounds show potent activity against adenosine receptors A2AAR based on structural activity relationship studies. Further molecular docking, molecular dynamics, ADMET analysis, and DFT (density functional theory) calculations were performed to understand the titled compound's future drug candidacy. DFT computations confirmed the good stability of the synthesized compounds, as evidenced by the optimized molecular geometry, HOMO-LUMO energy gap, and intermolecular interactions. NBO analysis confirmed intermolecular interactions mediated by lone pair, bonding, and anti-bonding orbitals. All DFT findings were consistent with experimental results, indicating that the synthesized molecules are highly stable. These findings suggest that the synthesized compounds are promising candidates for further development as drugs for the treatment of A2AAR-related diseases.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Shaaban K Mohamed
- Chemistry and Environmental Division, Manchester Metropolitan University, Manchester, England
| | - Sabir Ali Siddique
- Institute of Chemistry, The Islamia University of Bahawalpur, Baghdad-ul-Jadeed Campus, Bahawalpur, Pakistan
| | - Subramani Karthikeyan
- Centre for Healthcare Advancement, Innovation and Research, Vellore Institute of Technology University, Chennai Campus, Chennai, Tamil Nadu, India
| | - Eman A Ahmed
- Department of Chemistry, Faculty of Science, Sohag University, Sohag, Egypt
| | - Omran A Omran
- Department of Chemistry, Faculty of Science, Sohag University, Sohag, Egypt
| | - Joel T Mague
- Department of Chemistry, Tulane University, New Orleans, LA, USA
| | - Rashad Al-Salahi
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
| | - Youness El Bakri
- Department of Theoretical and Applied Chemistry, South Ural State University, Chelyabinsk, Russian Federation
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3
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Qadri T, Aziz M, Channar PA, Ejaz SA, Hussain M, Attaullah HM, Ujan R, Hussain Z, Zehra T, Saeed A, Shah MR, Ogaly HA, Al-Zahrani FAM. Synthesis, biological evaluation and in silico investigations of benzotriazole derivatives as potential inhibitors of NIMA related kinase. RSC Adv 2023; 13:33826-33843. [PMID: 38020022 PMCID: PMC10655664 DOI: 10.1039/d3ra06149c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2023] [Accepted: 11/06/2023] [Indexed: 12/01/2023] Open
Abstract
In the current study, a novel compound, bis(3-(2H-benzo[d][1,2,3]triazol-2-yl)-2-(prop-2-yn-1-yloxy)-5-(2,4,4-trimethylpentan-2-yl)phenyl)methane (TAJ1), has been synthesized by the reaction of 6,6'-methylenebis(2-(2H-benzo[d][1,2,3]triazol-2-yl)-4-(2,4,4-trimethylpentan-2-yl)phenol) (1), propargyl bromide (2) and potassium carbonate. Spectroscopic (FTIR, 1H-NMR, 13C-NMR) and single-crystal assays proved the structure of the synthesized sample. XRD analysis confirmed the structure of the synthesized compound, showing that it possesses two aromatic parts linked via a -CH2 carbon with a bond angle of 108.40°. The cell line activity reported a percent growth reduction for different cell types (HeLa cells, MCF-7 cells, and Vero cells) under various treatment conditions (TAJ1, cisplatin, and doxorubicin) after 24 hours and 48 hours. The percent growth reduction represents a decrease in cell growth compared to a control condition. Furthermore, density functional theory (DFT) calculations were utilized to examine the frontier molecular orbitals (FMOs) and overall chemical reactivity descriptors of TAJ1. The molecule's chemical reactivity and stability were assessed by determining the HOMO-LUMO energy gap. TAJ1 displayed a HOMO energy level of -0.224 eV, a LUMO energy level of -0.065 eV, and a HOMO-LUMO gap of 0.159 eV. Additionally, molecular docking analysis was performed to assess the binding affinities of TAJ1 with various proteins. The compound TAJ1 showed potent interactions with NEK2, exhibiting -10.5 kcal mol-1 binding energy. Although TAJ1 has demonstrated interactions with NEK7, NEK9, TP53, NF-KAPPA-B, and caspase-3 proteins, suggesting its potential as a therapeutic agent, it is important to evaluate the conformational stability of the protein-ligand complex. Hence, molecular dynamics simulations were conducted to assess this stability. To analyze the complex, root mean square deviation (RMSD) and root mean square fluctuation analyses were performed. The results of these analyses indicate that the top hits obtained from the virtual screening possess the ability to act as effective NEK2 inhibitors. Therefore, further investigation of the inhibitory potential of these identified compounds using in vitro and in vivo approaches is recommended.
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Affiliation(s)
- Tahir Qadri
- Department of Chemistry, University of Karachi Karachi 75270 Pakistan
| | - Mubashir Aziz
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, The Islamia University of Bahawalpur Bahawalpur 63100 Pakistan
| | - Pervaiz Ali Channar
- Department of Basic Science and Humanities, Faculty of Information Science Humanities, Dawood University of Engineering and Technology Karachi 74800 Karachi Pakistan
| | - Syeda Abida Ejaz
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, The Islamia University of Bahawalpur Bahawalpur 63100 Pakistan
| | - Mumtaz Hussain
- Department of Chemistry, University of Karachi Karachi 75270 Pakistan
| | - Hafiz Muhammad Attaullah
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, The Islamia University of Bahawalpur Bahawalpur 63100 Pakistan
| | - Rabail Ujan
- Dr M. A. Kazi Institute of Chemistry, University of Sindh Jamshoro Pakistan
| | - Zahid Hussain
- Department of Chemistry, University of Karachi Karachi 75270 Pakistan
| | - Tasneem Zehra
- Department of Basic Science and Humanities, Faculty of Information Science Humanities, Dawood University of Engineering and Technology Karachi 74800 Karachi Pakistan
| | - Aamer Saeed
- Department of Chemistry, Quaid-I-Azam University Islamabad 45320 Pakistan
| | - M R Shah
- H.E.J.Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi Karachi 7527 Pakistan
| | - Hanan A Ogaly
- Chemistry Department, College of Science, King Khalid University Abha 61421 Saudi Arabia
| | - Fatimah A M Al-Zahrani
- Chemistry Department, College of Science, King Khalid University Abha 61421 Saudi Arabia
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Ahmed K, Bashir M, Bano R, Sarfraz M, Khan HU, Khan S, Sharif A, Waseem A, Gilani MA, Batool K, Idrees R, Rauf A, Saleem RSZ, Arshad M. Potent heteroaromatic hydrazone based 1,2,4-triazine motifs: synthesis, anti-oxidant activity, cholinesterase inhibition, quantum chemical and molecular docking studies. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2023.135383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023]
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5
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Sadawarte GP, Halikar NK, Kale AD, Jagrut VB. Sodium Oxalate Mediate Synthesis and α-Amalyase Inhibition Assay of 5-Substituted-3-Phenyl-2-Thioxoimidazolidin-4-Ones. Polycycl Aromat Compd 2023. [DOI: 10.1080/10406638.2023.2177681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Affiliation(s)
- Gautam P. Sadawarte
- Department of Chemistry, B.P. Arts, S.M.A. Science and K.K.C. Commerce College, Chalisgaon, India
| | - Nilesh K. Halikar
- Department of Chemistry, Dr. Shantilal Dhanji Devsey Arts College & Commerce & Science College, Wada, India
| | - Amol D. Kale
- Department of Chemistry, Lal Bahadur Shastri Sr. College, Partur, India
| | - Vasant B. Jagrut
- Department of Chemistry, Swami Vivekanand Senior College, Mantha, India
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6
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Şahin S, Can NN. A Schiff Base with Polymorphic Structure ( Z′ = 2): Investigations with Computational Techniques and in Silico Predictions. Polycycl Aromat Compd 2023. [DOI: 10.1080/10406638.2022.2161585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Songül Şahin
- Department of Chemistry, Faculty of Art and Sciences, Ondokuz Mayis University, Samsun, Turkey
| | - Nisa Nur Can
- Department of Neuroscience, Institute of Health Sciences, Ondokuz Mayis University, Samsun, Turkey
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7
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Adjissi L, Chafai N, Benbouguerra K, Kirouani I, Hellal A, Layaida H, Elkolli M, Bensouici C, Chafaa S. Synthesis, characterization, DFT, antioxidant, antibacterial, pharmacokinetics and inhibition of SARS-CoV-2 main protease of some heterocyclic hydrazones. J Mol Struct 2022; 1270:134005. [PMID: 36033106 PMCID: PMC9395430 DOI: 10.1016/j.molstruc.2022.134005] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Revised: 08/05/2022] [Accepted: 08/22/2022] [Indexed: 02/04/2023]
Abstract
Three hydrazone derivatives have been synthesized using condensation reaction of 4-hydrazinylbenzoic acid with three aromatic aldehydes namely: thiophene-2-carbaldehyde, thiophene-3-carbaldehyde and 2-furaldehyde in ethanol at 78 °C reflux. The synthesized molecules have been characterized using spectroscopic and physicochemical methods including UV-Vis, IR, 1H NMR, 13C NMR, 15N NMR and melting point determination. Optimized molecular structures, UV-Vis and IR spectra modeling, the reactivity, the stability and some quantum chemical parameters of the synthesized molecules were modeled utilizing density functional theory (DFT). The obtained theoretical results were found in good agreement with the experimental results. On the other hand, the antioxidant and antibacterial activities of the molecules under study were evaluated to better understand the associated mechanisms of action specifically. Also, predicted ADME-T and pharmacokinetic parameters indicated that these compounds showed good oral bioavailability. Finally, molecular docking has been used to predict the inhibitory activity of the studied hydrazone derivatives on the SARS-CoV-2 main protease (Mpro).
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Affiliation(s)
- Lilia Adjissi
- Laboratory of Electrochemistry of Molecular Materials and Complex (LEMMC). Department of Process Engineering, Faculty of Technology, University of Ferhat ABBAS Setif-1, El-Mabouda campus, 19000 Sétif, Algeria
| | - Nadjib Chafai
- Laboratory of Electrochemistry of Molecular Materials and Complex (LEMMC). Department of Process Engineering, Faculty of Technology, University of Ferhat ABBAS Setif-1, El-Mabouda campus, 19000 Sétif, Algeria,Corresponding author
| | - Khalissa Benbouguerra
- Laboratory of Electrochemistry of Molecular Materials and Complex (LEMMC). Department of Process Engineering, Faculty of Technology, University of Ferhat ABBAS Setif-1, El-Mabouda campus, 19000 Sétif, Algeria
| | - Imene Kirouani
- Laboratory of Electrochemistry of Molecular Materials and Complex (LEMMC). Department of Process Engineering, Faculty of Technology, University of Ferhat ABBAS Setif-1, El-Mabouda campus, 19000 Sétif, Algeria
| | - Abdelkader Hellal
- Laboratory of Electrochemistry of Molecular Materials and Complex (LEMMC). Department of Process Engineering, Faculty of Technology, University of Ferhat ABBAS Setif-1, El-Mabouda campus, 19000 Sétif, Algeria
| | - Houdheifa Layaida
- Laboratory of Electrochemistry of Molecular Materials and Complex (LEMMC). Department of Process Engineering, Faculty of Technology, University of Ferhat ABBAS Setif-1, El-Mabouda campus, 19000 Sétif, Algeria
| | - Meriem Elkolli
- Laboratory of applied microbiology, Faculty of Natural and Life Sciences, University of Setif 1, Algeria
| | - Chawki Bensouici
- Centre de Recherche en Biotechnologie, Ali Mendjli, Nouvelle Ville UV 03, BP E73 Constantine, Algeria
| | - Salah Chafaa
- Laboratory of Electrochemistry of Molecular Materials and Complex (LEMMC). Department of Process Engineering, Faculty of Technology, University of Ferhat ABBAS Setif-1, El-Mabouda campus, 19000 Sétif, Algeria
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8
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Saeed A, Tariq Z, Shabir G, Hökelek T, Bolte M, Ejaz SA, Ahmed A. Green Synthesis, X-Ray Crystallography, DFT and Hirshfeld analysis of C-2 Symmetric 1,3-bis(4-ethylphenyl)triaz-1-ene. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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9
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Enbaraj E, Jeyashree K, Logeshwari G, Manikandan H, Sivakumar K. Synthesis, Crystal structure, Hirshfeld surface analysis and theoretical studies of Bis(substituted benzylidene)ethan-1,2-diamines. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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10
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Steffy AD, Arul Dhas D, Hubert Joe I. Nonlinear optical activity of piperazine-1,4-diium bis(sulfanilate) compound. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113896] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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11
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Sinha P, Kumar Yadav A. Structural, Electronic, Spectroscopic and Molecular Docking Analysis of Novel Hetero Oxetane Ring Compound. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113919] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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12
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Bashir B, Riaz N, Ejaz SA, Saleem M, Iqbal A, Mahmood HMK, Ejaz S, Ashraf M, Aziz-ur-Rehman, Bhattarai K. Parsing p-Tolyloxy-1,3,4-oxadiazolepropanamides as 15-Lipoxygenase Inhibitors Prop up by In Vitro and In Silico Profiling Including Structure Determination. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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13
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Hariprasad S, Sreenatha N, Suchithra B, Nageshbabu R, Suman G, Lakshminarayana B, Chakravarthy ASJ. Synthesis, Structural and Computational Studies of a novel anionic synthon and its derivatives. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134558] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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14
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Amalraj SD, Palapetta SC, Harichandran G. A facile one-pot synthesis, computational and molecular docking studies of benzimidazole and benzothiazole compounds using Amberlite IRA 400-Cl resin as green/reusable catalyst. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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15
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Novotortsev VK, Kuandykov DM, Kukushkin ME, Zyk NV, Beloglazkina EK. Synthesis of 5-methylidene-2-thio- and 2-selenohydantoins from isothiocyanates or isoselenocyanates and l-serine. MENDELEEV COMMUNICATIONS 2022. [DOI: 10.1016/j.mencom.2022.11.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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16
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Saeed A, Ejaz SA, Khalid A, Channar PA, Aziz M, Abbas Q, Wani TA, Alsaif NA, Alanazi MM, Al-Hossaini AM, Altwaijry N, Zargar S, Elhadi M, Hökelek T. Acetophenone-Based 3,4-Dihydropyrimidine-2(1H)-Thione as Potential Inhibitor of Tyrosinase and Ribonucleotide Reductase: Facile Synthesis, Crystal Structure, In-Vitro and In-Silico Investigations. Int J Mol Sci 2022; 23:13164. [PMID: 36361953 PMCID: PMC9658835 DOI: 10.3390/ijms232113164] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 10/24/2022] [Accepted: 10/27/2022] [Indexed: 08/09/2023] Open
Abstract
The acetophenone-based 3,4-dihydropyrimidine-2(1H)-thione was synthesized by the reaction of 4-methylpent-3-en-2-one (1), 4-acetyl aniline (2) and potassium thiocyanate. The spectroscopic analysis including: FTIR, 1H-NMR, and single crystal analysis proved the structure of synthesized compound (4), with the six-membered nonplanar ring in envelope conformation. In crystal structure, the intermolecular N-H ⋯ S and C-H ⋯ O hydrogen bonds link the molecule in a two-dimensional manner which is parallel to (010) the plane enclosing R22 (8) and R22 (10) ring motifs. After that, the Hirshfeld surfaces and their related two-dimensional fingerprint plots were used for thorough investigation of intermolecular interactions. According to Hirshfeld surface analysis, the most substantial contributions to the crystal packing are from H ⋯ H (59.5%), H ⋯ S/S ⋯ H (16.1%), and H ⋯ C/C ⋯ H (13.1%) interactions. The electronic properties and stability of the compound were investigated through density functional theory (DFT) studies using B3LYP functional and 6-31G* as a basis set. The compound 4 displayed the high chemical reactivity with chemical softness of 2.48. In comparison to the already reported known tyrosinase inhibitor, the newly synthesized derivatives exhibited almost seven-fold better inhibition of tyrosinase (IC50 = 1.97 μM), which was further supported by molecular docking studies. The compound 4 inside the active pocket of ribonucleotide reductase (RNR) exhibited a binding energy of -19.68 kJ/mol, and with mammalian deoxy ribonucleic acid (DNA) it acts as an effective DNA groove binder with a binding energy of -21.32 kJ/mol. The results suggested further exploration of this compound at molecular level to synthesize more potential leads for the treatment of cancer.
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Affiliation(s)
- Aamer Saeed
- Department of Chemistry, Quaid-i-Azam University, Islamabad 45320, Pakistan
| | - Syeda Abida Ejaz
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, The Islamia University of Bahawalpur, Bahawalpur 63100, Pakistan
| | - Aqsa Khalid
- Department of Chemistry, Quaid-i-Azam University, Islamabad 45320, Pakistan
| | - Pervaiz Ali Channar
- Department of Basic Sciences and Humanities, Faculty of of Information Science and Humanities, Dawood University of Engineering and Technology, Karachi 74800, Pakistan
| | - Mubashir Aziz
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, The Islamia University of Bahawalpur, Bahawalpur 63100, Pakistan
| | - Qamar Abbas
- Department of Biology, College of Science, University of Bahrain, Sakhir Campus, Zallaq 32038, Bahrain
- Department of Biological Sciences, College of Natural Sciences, Kongju National University, 56 Gongjudehak-Ro, Gongju 314-701, Chungnam, Korea
| | - Tanveer A. Wani
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia
| | - Nawaf A. Alsaif
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia
| | - Mohammed M. Alanazi
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia
| | - Abdullah M. Al-Hossaini
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia
| | - Nojood Altwaijry
- Department of Biochemistry, College of Science, King Saud University, P.O. Box 22452, Riyadh 11451, Saudi Arabia
| | - Seema Zargar
- Department of Biochemistry, College of Science, King Saud University, P.O. Box 22452, Riyadh 11451, Saudi Arabia
| | - Muawya Elhadi
- Department of Physics, Faculty of Science and Humanities, Ed Dawadmi, Shaqra University, Shaqra 11961, Saudi Arabia
| | - Tuncer Hökelek
- Department of Physics, Faculty of Engineering, Hacettepe University, Beytepe, Ankara 06800, Turkey
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17
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Anthony LA, Rajaraman D, Sundararajan G, Suresh M, Nethaji P, Jaganathan R, Poomani K. Synthesis, crystal structure, Hirshfeld surface analysis, DFT, molecular docking and molecular dynamic simulation studies of (E)-2,6-bis(4-chlorophenyl)-3-methyl-4-(2-(2,4,6-trichlorophenyl)hydrazono)piperidine derivatives. J Mol Struct 2022; 1266:133483. [PMID: 35692554 PMCID: PMC9175251 DOI: 10.1016/j.molstruc.2022.133483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Revised: 05/22/2022] [Accepted: 06/07/2022] [Indexed: 11/04/2022]
Abstract
A novel drug to treat SARS-CoV-2 infections and hydroxyl chloroquine analogue, (E)-2,6-bis(4-chlorophenyl)-3-methyl-4-(2-(2,4,6-trichlorophenyl)hydrazono)piperidine (BCMTP) compound has been synthesized in one pot reaction. The novel compound BCMTP has been characterized by FT-IR, 1H-NMR, 13C-NMR and single-crystal X-ray diffraction patterns. Crystal packing is stabilized by C8-H8A•••Cl10i, C41-H41•••Cl1ii and N1-H1A•••Cl6iii intermolecular hydrogen bonds. From the geometrical parameters, it is observed that the piperidine ring adopts chair conformation. Hirshfeld surface analysis was carried out to quantify the interactions and an interaction energy analysis was done to study the interactions between pairs of molecules. The geometrical structure was optimized by density functional theory (DFT) method at B3LYP/6-31G (d, p) as the basic set. The smaller binding energy value provides the higher reactivity of BCMTP compound than hydroxyl chloroquine and was corrected by high electrophilic and low nucleophilic reactions. The stability and charge delocalization of the molecule were also considered by natural bond orbital (NBO) analysis. The HOMO-LUMO energies describe the charge transfer which takes place within the molecule. Molecular electrostatic potential has also been analysed. Molecular docking studies are implemented to analyse the binding energy of the BCMTP compound against standard drugs such as the crystal structure of ADP ribose phosphatase of NSP3 from SARS-CoV-2 in complex with MES and SARS-CoV-2 main protease with an unliganded active site (2019-nCoV, corona virus disease 2019, COVID-19) and found to be considered having better antiviral agents. Molecular dynamics simulation was performed for COVID-19 main protease (Mpro: 6WCF/6Y84) to understand the elements governing the inhibitory effect and the stability of interaction under dynamic conditions.
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Affiliation(s)
- L Athishu Anthony
- Department of Chemistry, St Joseph University, Dimapur, Nagaland 797 115, India
| | - D Rajaraman
- Department of Chemistry, St Joseph University, Dimapur, Nagaland 797 115, India
| | - G Sundararajan
- Department of Chemistry, Thanthai Hans Roever College (Autonomous), Perambalur 621220, Tamil Nadu, India
| | - M Suresh
- Department of Chemistry, AVS Arts and Science College, Salem, Tamil Nadu 603 110, India
| | - P Nethaji
- Department of Chemical Engineering, Sri Sivasubramaniya Nadar College of Engineering, Tamil Nadu 603 110, India
| | - R Jaganathan
- Laboratory of Biocrystallography and Computational Molecular Biology, Department of Physics, Periyar University, Salem, India
| | - Kumaradhas Poomani
- Laboratory of Biocrystallography and Computational Molecular Biology, Department of Physics, Periyar University, Salem, India
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18
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Design, Synthesis, Biological evaluation of Isonicotinoyl-pyrazolyl-coumarin derivatives and computational study. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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19
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Elsayed GH, Fahim AM, Khodair AI. Synthesis, anti-cancer activity, gene expression and docking stimulation of 2-thioxoimidazolidin-4-one derivatives. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133401] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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20
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Preparation and structure analysis of non-covalent interactions mediated 2D-3D supramolecular adducts from 6-methylnicotinamide and carboxylic acids. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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21
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Combined experimental and theoretical investigations on 9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,9-dihydro-6H-purin-6-one 4-nitrophenol (IPNP) molecule. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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22
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Molecular modelling, DFT, molecular dynamics simulations, synthesis and antimicrobial potential studies of heterocyclic nucleoside mimetics. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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23
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Abdelazeem NM, Sroor FM, Basyouni WM, Adel I, Tantawy MA. Synthesis and Evaluation of New 3,4-Dihydropyrimidin-2-(1 H)-Ones and -Thiones as Anti-Cancer Agents: In Vitro, Molecular Docking and SAR Studies. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2108076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
Affiliation(s)
- Nagwa M. Abdelazeem
- Organometallic and Organometalloid Chemistry Department, National Research Centre, Cairo, Egypt
| | - Farid M. Sroor
- Organometallic and Organometalloid Chemistry Department, National Research Centre, Cairo, Egypt
| | - Wahid M. Basyouni
- Organometallic and Organometalloid Chemistry Department, National Research Centre, Cairo, Egypt
| | - Islam Adel
- The Egyptian Drug Authority, Cairo, Egypt
| | - Mohamed A. Tantawy
- Hormones Department, Medical Research, and Clinical Studies Institute, National Research Centre, Cairo, Egypt
- Stem Cells Laboratory, Center of Excellence for Advanced Sciences, National Research Centre, Cairo, Egypt
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24
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Synthesis, antimicrobial evaluation and molecular modeling studies of novel thiosemicarbazides/semicarbazides derived from p-aminobenzoic acid. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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25
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Muslim M, Ahmad M, Arish M, Alam MJ, Alarifi A, Afzal M, Sepay N, Ahmad S. 5-Hydroxyisophthalic acid and neocuproine containing copper(II) complex as a promising cytotoxic agent: Structure elucidation, topology, Hirshfeld surface, DFT calculations, and molecular docking analysis. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133879] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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26
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Khalid A, Arshad N, Channar PA, Saeed A, Mir MI, Abbas Q, Ejaz SA, Hökelek T, Saeed A, Tehzeeb A. Structure and surface analyses of a newly synthesized acyl thiourea derivative along with its in silico and in vitro investigations for RNR, DNA binding, urease inhibition and radical scavenging activities. RSC Adv 2022; 12:17194-17207. [PMID: 35755589 PMCID: PMC9185314 DOI: 10.1039/d2ra03160d] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Accepted: 06/06/2022] [Indexed: 01/18/2023] Open
Abstract
N-((4-Acetylphenyl)carbamothioyl)-2,4-dichlorobenzamide (4) was synthesized by the treatment of 2,4-dichlorobenzoyl chloride with potassium thiocyanate in a 1 : 1 molar ratio in dry acetone to afford the 2,4-dichlorobenzoyl isothiocyanate in situ which on reaction with acetyl aniline furnished (4) in good yield and high purity. The compound was confirmed by FTIR, 1H-NMR, and 13C-NMR and single crystal X-ray diffraction studies. The planar rings were situated at a dihedral angle of 33.32(6)°. The molecules, forming S(6) ring motifs with the intramolecular N-H⋯O hydrogen bonds, were linked through intermolecular C-H⋯O and N-H⋯S hydrogen bonds, enclosing R2 2(8) ring motifs, into infinite double chains along [101]. C-H⋯π and π⋯π interactions with an inter-centroid distance of 3.694 (1) Å helped to consolidate a three-dimensional architecture. Hirshfeld surface (HS) analysis further indicated that the most important contributions for the crystal packing were from H⋯C/C⋯H (20.9%), H⋯H (20.5%), H⋯Cl/Cl⋯H (19.4%), H⋯O/O⋯H (13.8%) and H⋯S/S⋯H (8.9%) interactions. Thus C-H⋯π (ring), π⋯π, van der Waals interactions and hydrogen bonding played the major roles in the crystal packing. The electronic structure and computed DFT (density functional theory) parameters identified the reactivity profile of compound (4). In silico binding of (4) with RNA indicated the formation of a stable protein-ligand complex via hydrogen bonding, while DNA docking studies inferred (4) as a potent groove binder. The experimentally observed hypochromic change (57.2%) in the UV-visible spectrum of (4) in the presence of varying DNA concentrations together with the evaluated binding parameters (K b; 7.9 × 104 M-1, ΔG; -28.42 kJ mol-1) indicated spontaneous interaction of (4) with DNA via groove binding and hence supported the findings obtained through docking analysis. This compound also showed excellent urease inhibition activity in both in silico and vitro studies with an IC50 value of 0.0389 ± 0.0017 μM. However, the radical scavenging efficiency of (4) was found to be modest in comparison to vitamin C.
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Affiliation(s)
- Aqsa Khalid
- Department of Chemistry, Quaid-i-Azam University 45320 Islamabad Pakistan
| | - Nasima Arshad
- Department of Chemistry, Allama Iqbal Open University 44000 Islamabad Pakistan
| | | | - Aamer Saeed
- Department of Chemistry, Quaid-i-Azam University 45320 Islamabad Pakistan
| | - Muhammad Ismail Mir
- Department of Chemistry, Allama Iqbal Open University 44000 Islamabad Pakistan
| | - Qamar Abbas
- Department of Biology, College of Science, University of Bahrain, Sakhir Campus 32038 Bahrain
| | - Syeda Abida Ejaz
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, The Islamia University of Bahawalpur Pakistan
| | - Tuncer Hökelek
- Department of Physics, Faculty of Engineering, Hacettepe University Beytepe-Ankara 06800 Turkey
| | - Amna Saeed
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, The Islamia University of Bahawalpur Pakistan
| | - Arfa Tehzeeb
- Department of Chemistry, Quaid-i-Azam University 45320 Islamabad Pakistan
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27
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Veena K, Raghu M, Yogesh Kumar K, Dahlous KA, Bahajjaj AAA, Mani G, Jeon BH, Prashanth M. Development of penipanoid C-inspired 2-benzoyl-1-methyl-2,3-dihydroquinazolin-4(1H)-one derivatives as potential EGFR inhibitors: Synthesis, anticancer evaluation and molecular docking study. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132674] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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28
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Wang T, Wu F, Luo L, Zhang Y, Ma J, Hu Y. Efficient synthesis and cytotoxic activity of polysubstituted thieno[2,3-d]pyrimidine derivatives. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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29
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Chai YM, Zhang HB, Zhang XY, Chai LQ. X-ray structures, spectroscopic, antimicrobial activity, ESP/HSA and TD/DFT calculations of Bi(III) complex containing imidazole ring. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132517] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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30
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Sangeetha P, Sangeetha R, Mullainathan S, Irfan A, Sevvanthi S, Muthu S. Molecular docking evaluation and spectroscopic study of 2-amino-1,4-benzenedisulfonic acid using the IEFPCM model, electronic properties of different solvents. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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31
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El Bakri Y, Mohamed SK, Ahmad S, Albayati MR, Elgarhy SMI, Lai CH, Mague JT. Synthesis, crystal structure investigation and computational approach to discover potential hydrazide derivatives as a potent inhibitor of cyclooxygenase-2 enzyme. J Biochem Mol Toxicol 2022; 36:e23082. [PMID: 35435307 DOI: 10.1002/jbt.23082] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2021] [Revised: 01/27/2022] [Accepted: 04/01/2022] [Indexed: 10/18/2022]
Abstract
This study reports the synthesis of two new hydrazide derivatives, namely, (E)-N'-(4- bromobenzylidene)-2-(4-isobutylphenyl)propanehydrazide (4a) and (E)-N'-benzylidene-2-(4-isobutylphenyl)propanehydrazide (4b), respectively. The compounds were synthesized by the reaction of benzaldehyde with Ibuprofen acid hydrazide. Their structures were confirmed by X-ray crystallography. To try to do a more detailed investigation, computational studies including Hirshfeld surface analyses, energy frameworks, density functional theory (DFT) optimizations, frontier orbital analyses, molecular electrostatic potential analyses, and natural bond orbital analyses of the studied compounds are performed. Moreover, molecular docking and dynamics simulations of complexes of the compounds with the cyclooxygenase-2 (COX-2) enzyme were performed to determine the anti-inflammatory potential of the compounds. These analyses predicted the compounds to show maximum chemical interactions and be dynamically stable during simulation time. Furthermore, estimation of binding free energies confirmed the high binding affinity of the compounds for the COX-2 enzyme.
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Affiliation(s)
- Youness El Bakri
- Department of Theoretical and Applied Chemistry, South Ural State University, Chelyabinsk, Russia
| | - Shaaban K Mohamed
- Chemistry and Environmental Division, Manchester Metropolitan University, Manchester, England.,Chemistry Department, Faculty of Science, Minia University, El-Minia, Egypt
| | - Sajjad Ahmad
- Department of Health and Biological Sciences, Abasyn University, Peshawar, Pakistan
| | - Mustafa R Albayati
- Department of Chemistry, College of Science, Kirkuk University, Kirkuk, Iraq
| | - Sahar M I Elgarhy
- Department of Bio Chemistry, Faculty of Science, Beni Suef University, Beni Suef, Egypt
| | - Chin-Hung Lai
- Department of Medical Applied Chemistry, Chung Shan Medical University, Taichung, Taiwan.,Department of Medical Education, Chung Shan Medical University Hospital, Taichung, Taiwan
| | - Joel T Mague
- Department of Chemistry, Tulane University, New Orleans, Louisiana, USA
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32
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Structures, atomic charges, emission properties and DFT studies of biquinoline derivatives induced by protonation of a nitrogen atom. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131990] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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33
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Synthesis, molecular modelling study of the methaqualone analogues as anti-convulsant agent with improved cognition activity and minimized neurotoxicity. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131972] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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34
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Elbadawi MM, Khodair AI, Awad MK, Kassab SE, Elsaady MT, Abdellatif KR. Design, synthesis and biological evaluation of novel thiohydantoin derivatives as antiproliferative agents: A combined experimental and theoretical assessments. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131574] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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35
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Upendranath K, Venkatesh T, Vinuth M. Development and visualization of level II, III features of latent fingerprints using some new 4-(4-substitutedphenyl)-6-(4-substitutedphenyl)-2-oxo-1,2-dihydropyridine-3-carbonitrile derivatives: Synthesis, characterization, optoelectronic and DFT studies. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100388] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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36
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Şahin İ, Çeşme M, Özgeriş FB, Güngör Ö, Tümer F. Design and synthesis of 1,4-disubstituted 1,2,3-triazoles: Biological evaluation, in silico molecular docking and ADME screening. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131344] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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