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Lahtinen J, Ronni P, Subramaniyam NP, Koulouri A, Wolters C, Pursiainen S. Standardized Kalman filtering for dynamical source localization of concurrent subcortical and cortical brain activity. Clin Neurophysiol 2024; 168:15-24. [PMID: 39423516 DOI: 10.1016/j.clinph.2024.09.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Revised: 08/16/2024] [Accepted: 09/21/2024] [Indexed: 10/21/2024]
Abstract
OBJECTIVE We introduce standardized Kalman filtering (SKF) as a new spatiotemporal method for tracking brain activity. Via the Kalman filtering scheme, the computational workload is low, and by spatiotemporal standardization, we reduce the depth bias of non-standardized Kalman filtering (KF). METHODS We describe the standardized KF methodology for spatiotemporal tracking from the Bayesian perspective. We construct a realistic simulation setup that resembles activity due to somatosensory evoked potential (SEP) to validate the proposed methodology before we run our tests using real SEP data. RESULTS In the experiments, SKF was compared with standardized low-resolution brain electromagnetic tomography (sLORETA) and the non-standardized KF. SKF localized the cortical and subcortical SEP originators appropriately and tracked P20/N20 originators for investigated signal-to-noise ratios (25, 15, and 5 dB). sLORETA distinguished those for 25 and 15 dB suppressing the subcortical originators. KF tracked only the evolution of cortical activity but mislocalized it. CONCLUSIONS The numerical results suggest that SKF inherits the estimation accuracy of sLORETA and traceability of KF while producing focal estimates for SEP originators. SIGNIFICANCE SKF could help study time-evolving brain activities and localize landmarks with a deep contributor or when there is no prior knowledge of evolution.
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Affiliation(s)
- Joonas Lahtinen
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
| | - Paavo Ronni
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland
| | | | - Alexandra Koulouri
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
| | - Carsten Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Münster 48149, Germany; Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, Münster 48149, Germany.
| | - Sampsa Pursiainen
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
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Pigorini A, Avanzini P, Barborica A, Bénar CG, David O, Farisco M, Keller CJ, Manfridi A, Mikulan E, Paulk AC, Roehri N, Subramanian A, Vulliémoz S, Zelmann R. Simultaneous invasive and non-invasive recordings in humans: A novel Rosetta stone for deciphering brain activity. J Neurosci Methods 2024; 408:110160. [PMID: 38734149 DOI: 10.1016/j.jneumeth.2024.110160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Revised: 04/10/2024] [Accepted: 05/01/2024] [Indexed: 05/13/2024]
Abstract
Simultaneous noninvasive and invasive electrophysiological recordings provide a unique opportunity to achieve a comprehensive understanding of human brain activity, much like a Rosetta stone for human neuroscience. In this review we focus on the increasingly-used powerful combination of intracranial electroencephalography (iEEG) with scalp electroencephalography (EEG) or magnetoencephalography (MEG). We first provide practical insight on how to achieve these technically challenging recordings. We then provide examples from clinical research on how simultaneous recordings are advancing our understanding of epilepsy. This is followed by the illustration of how human neuroscience and methodological advances could benefit from these simultaneous recordings. We conclude with a call for open data sharing and collaboration, while ensuring neuroethical approaches and argue that only with a true collaborative approach the promises of simultaneous recordings will be fulfilled.
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Affiliation(s)
- Andrea Pigorini
- Department of Biomedical, Surgical and Dental Sciences, Università degli Studi di Milano, Milan, Italy; UOC Maxillo-facial Surgery and dentistry, Fondazione IRCCS Cà Granda, Ospedale Maggiore Policlinico, Milan, Italy.
| | - Pietro Avanzini
- Institute of Neuroscience, Consiglio Nazionale delle Ricerche, Parma, Italy
| | | | - Christian-G Bénar
- Aix Marseille Univ, Inserm, U1106, INS, Institut de Neurosciences des Systèmes, Marseille, France
| | - Olivier David
- Aix Marseille Univ, Inserm, U1106, INS, Institut de Neurosciences des Systèmes, Marseille, France
| | - Michele Farisco
- Centre for Research Ethics and Bioethics, Department of Public Health and Caring Sciences, Uppsala University, P.O. Box 256, Uppsala, SE 751 05, Sweden; Science and Society Unit Biogem, Biology and Molecular Genetics Institute, Via Camporeale snc, Ariano Irpino, AV 83031, Italy
| | - Corey J Keller
- Department of Psychiatry & Behavioral Sciences, Stanford University Medical Center, Stanford, CA 94305, USA; Wu Tsai Neurosciences Institute, Stanford University Medical Center, Stanford, CA 94305, USA; Veterans Affairs Palo Alto Healthcare System, and the Sierra Pacific Mental Illness, Research, Education, and Clinical Center (MIRECC), Palo Alto, CA 94394, USA
| | - Alfredo Manfridi
- Department of Pathophysiology and Transplantation, Università degli Studi di Milano, Milan, Italy
| | - Ezequiel Mikulan
- Department of Health Sciences, Università degli Studi di Milano, Milan, Italy
| | - Angelique C Paulk
- Department of Neurology and Center for Neurotechnology and Neurorecovery, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA
| | - Nicolas Roehri
- EEG and Epilepsy Unit, Dpt of Clinical Neurosciences, Geneva University Hospitals and University of Geneva, Switzerland
| | - Ajay Subramanian
- Department of Psychiatry & Behavioral Sciences, Stanford University Medical Center, Stanford, CA 94305, USA; Wu Tsai Neurosciences Institute, Stanford University Medical Center, Stanford, CA 94305, USA; Veterans Affairs Palo Alto Healthcare System, and the Sierra Pacific Mental Illness, Research, Education, and Clinical Center (MIRECC), Palo Alto, CA 94394, USA
| | - Serge Vulliémoz
- EEG and Epilepsy Unit, Dpt of Clinical Neurosciences, Geneva University Hospitals and University of Geneva, Switzerland
| | - Rina Zelmann
- Department of Neurology and Center for Neurotechnology and Neurorecovery, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
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Dayarian N, Khadem A. A hybrid boundary element-finite element approach for solving the EEG forward problem in brain modeling. Front Syst Neurosci 2024; 18:1327674. [PMID: 38764980 PMCID: PMC11099220 DOI: 10.3389/fnsys.2024.1327674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Accepted: 02/22/2024] [Indexed: 05/21/2024] Open
Abstract
This article introduces a hybrid BE-FE method for solving the EEG forward problem, leveraging the strengths of both the Boundary Element Method (BEM) and Finite Element Method (FEM). FEM accurately models complex and anisotropic tissue properties for realistic head geometries, while BEM excels in handling isotropic tissue regions and dipolar sources efficiently. The proposed hybrid method divides regions into homogeneous boundary element (BE) regions that include sources and heterogeneous anisotropic finite element (FE) regions. So, BEM models the brain, including dipole sources, and FEM models other head layers. Validation includes inhomogeneous isotropic/anisotropic three- and four-layer spherical head models, and a four-layer MRI-based realistic head model. Results for six dipole eccentricities and two orientations are computed using BEM, FEM, and hybrid BE-FE method. Statistical analysis, comparing error criteria of RDM and MAG, reveals notable improvements using the hybrid FE-BE method. In the spherical head model, the hybrid BE-FE method compared with FEM demonstrates enhancements of at least 1.05 and 38.31% in RDM and MAG criteria, respectively. Notably, in the anisotropic four-layer head model, improvements reach a maximum of 88.3% for RDM and 93.27% for MAG over FEM. Moreover, in the anisotropic four-layer realistic head model, the proposed hybrid method exhibits 55.4% improvement in RDM and 89.3% improvement in MAG compared to FEM. These findings underscore the proposed method is a promising approach for solving the realistic EEG forward problems, advancing neuroimaging techniques and enhancing understanding of brain function.
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Affiliation(s)
| | - Ali Khadem
- Department of Biomedical Engineering, Faculty of Electrical Engineering, K. N. Toosi University of Technology, Tehran, Iran
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Lahtinen J, Koulouri A, Rampp S, Wellmer J, Wolters C, Pursiainen S. Standardized hierarchical adaptive Lp regression for noise robust focal epilepsy source reconstructions. Clin Neurophysiol 2024; 159:24-40. [PMID: 38244372 DOI: 10.1016/j.clinph.2023.12.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 11/02/2023] [Accepted: 12/02/2023] [Indexed: 01/22/2024]
Abstract
OBJECTIVE To investigate the ability of standardization to reduce source localization errors and measurement noise uncertainties for hierarchical Bayesian algorithms with L1- and L2-norms as priors in electroencephalography and magnetoencephalography of focal epilepsy. METHODS Description of the standardization methodology relying on the Hierarchical Bayesian framework, referred to as the Standardized Hierarchical Adaptive Lp-norm Regularization (SHALpR). The performance was tested using real data from two focal epilepsy patients. Simulated data that resembled the available real data was constructed for further localization and noise robustness investigation. RESULTS The proposed algorithms were compared to their non-standardized counterparts, Standardized low-resolution brain electromagnetic tomography, Standardized Shrinking LORETA-FOCUSS, and Dynamic statistical parametric maps. Based on the simulations, the standardized Hierarchical adaptive algorithm using L2-norm was noise robust for 10 dB signal-to-noise ratio (SNR), whereas the L1-norm prior worked robustly also with 5 dB SNR. The accuracy of the standardized L1-normed methodology to localize focal activity was under 1 cm for both patients. CONCLUSIONS Numerical results of the proposed methodology display improved localization and noise robustness. The proposed methodology also outperformed the compared methods when dealing with real data. SIGNIFICANCE The proposed standardized methodology, especially when employing the L1-norm, could serve as a valuable assessment tool in surgical decision-making.
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Affiliation(s)
- Joonas Lahtinen
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
| | - Alexandra Koulouri
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
| | - Stefan Rampp
- Department of Neurosurgery, University Hospital Halle (Saale), Halle 06097, Germany; Department of Neurosurgery, University Hospital Erlangen, Erlangen 91054, Germany; Department of Neuroradiology, University Hospital Erlangen, Erlangen 91054, Germany.
| | - Jörg Wellmer
- Ruhr-Epileptology, Department of Neurology, University Hospital Knappschaftskrankenhaus, Ruhr-University, Bochum44892, Germany.
| | - Carsten Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Münster 48149, Germany; Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, Münster 48149, Germany.
| | - Sampsa Pursiainen
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
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Hirata A, Niitsu M, Phang CR, Kodera S, Kida T, Rashed EA, Fukunaga M, Sadato N, Wasaka T. High-resolution EEG source localization in personalized segmentation-free head model with multi-dipole fitting. Phys Med Biol 2024; 69:055013. [PMID: 38306964 DOI: 10.1088/1361-6560/ad25c3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Accepted: 02/02/2024] [Indexed: 02/04/2024]
Abstract
Objective. Electroencephalograms (EEGs) are often used to monitor brain activity. Several source localization methods have been proposed to estimate the location of brain activity corresponding to EEG readings. However, only a few studies evaluated source localization accuracy from measured EEG using personalized head models in a millimeter resolution. In this study, based on a volume conductor analysis of a high-resolution personalized human head model constructed from magnetic resonance images, a finite difference method was used to solve the forward problem and to reconstruct the field distribution.Approach. We used a personalized segmentation-free head model developed using machine learning techniques, in which the abrupt change of electrical conductivity occurred at the tissue interface is suppressed. Using this model, a smooth field distribution was obtained to address the forward problem. Next, multi-dipole fitting was conducted using EEG measurements for each subject (N= 10 male subjects, age: 22.5 ± 0.5), and the source location and electric field distribution were estimated.Main results.For measured somatosensory evoked potential for electrostimulation to the wrist, a multi-dipole model with lead field matrix computed with the volume conductor model was found to be superior than a single dipole model when using personalized segmentation-free models (6/10). The correlation coefficient between measured and estimated scalp potentials was 0.89 for segmentation-free head models and 0.71 for conventional segmented models. The proposed method is straightforward model development and comparable localization difference of the maximum electric field from the target wrist reported using fMR (i.e. 16.4 ± 5.2 mm) in previous study. For comparison, DUNEuro based on sLORETA was (EEG: 17.0 ± 4.0 mm). In addition, somatosensory evoked magnetic fields obtained by Magnetoencephalography was 25.3 ± 8.5 mm using three-layer sphere and sLORETA.Significance. For measured EEG signals, our procedures using personalized head models demonstrated that effective localization of the somatosensory cortex, which is located in a non-shallower cortex region. This method may be potentially applied for imaging brain activity located in other non-shallow regions.
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Affiliation(s)
- Akimasa Hirata
- Department of Electrical and Mechanical Engineering, Nagoya Institute of Technology, Nagoya 466-8555, Japan
- Center of Biomedical Physics and Information Technology, Nagoya Institute of Technology, Nagoya 466-8555, Japan
| | - Masamune Niitsu
- Department of Electrical and Mechanical Engineering, Nagoya Institute of Technology, Nagoya 466-8555, Japan
| | - Chun Ren Phang
- Department of Electrical and Mechanical Engineering, Nagoya Institute of Technology, Nagoya 466-8555, Japan
- Center of Biomedical Physics and Information Technology, Nagoya Institute of Technology, Nagoya 466-8555, Japan
| | - Sachiko Kodera
- Department of Electrical and Mechanical Engineering, Nagoya Institute of Technology, Nagoya 466-8555, Japan
- Center of Biomedical Physics and Information Technology, Nagoya Institute of Technology, Nagoya 466-8555, Japan
| | - Tetsuo Kida
- Department of Functioning and Disability, Institute for Developmental Research, Aichi Developmental Disability Center, Kasugai 480-0392, Japan
| | - Essam A Rashed
- Graduate School of Information Science, University of Hyogo, Kobe 650-0047, Japan
| | - Masaki Fukunaga
- Division of Cerebral Integration, National Institute for Physiological Sciences, Okazaki, Aichi 444-8585, Japan
| | - Norihiro Sadato
- Division of Cerebral Integration, National Institute for Physiological Sciences, Okazaki, Aichi 444-8585, Japan
| | - Toshiaki Wasaka
- Department of Electrical and Mechanical Engineering, Nagoya Institute of Technology, Nagoya 466-8555, Japan
- Center of Biomedical Physics and Information Technology, Nagoya Institute of Technology, Nagoya 466-8555, Japan
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Piastra MC, Oostenveld R, Homölle S, Han B, Chen Q, Oostendorp T. How to assess the accuracy of volume conduction models? A validation study with stereotactic EEG data. Front Hum Neurosci 2024; 18:1279183. [PMID: 38410258 PMCID: PMC10894995 DOI: 10.3389/fnhum.2024.1279183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Accepted: 01/25/2024] [Indexed: 02/28/2024] Open
Abstract
Introduction Volume conduction models of the human head are used in various neuroscience fields, such as for source reconstruction in EEG and MEG, and for modeling the effects of brain stimulation. Numerous studies have quantified the accuracy and sensitivity of volume conduction models by analyzing the effects of the geometrical and electrical features of the head model, the sensor model, the source model, and the numerical method. Most studies are based on simulations as it is hard to obtain sufficiently detailed measurements to compare to models. The recording of stereotactic EEG during electric stimulation mapping provides an opportunity for such empirical validation. Methods In the study presented here, we used the potential distribution of volume-conducted artifacts that are due to cortical stimulation to evaluate the accuracy of finite element method (FEM) volume conduction models. We adopted a widely used strategy for numerical comparison, i.e., we fixed the geometrical description of the head model and the mathematical method to perform simulations, and we gradually altered the head models, by increasing the level of detail of the conductivity profile. We compared the simulated potentials at different levels of refinement with the measured potentials in three epilepsy patients. Results Our results show that increasing the level of detail of the volume conduction head model only marginally improves the accuracy of the simulated potentials when compared to in-vivo sEEG measurements. The mismatch between measured and simulated potentials is, throughout all patients and models, maximally 40 microvolts (i.e., 10% relative error) in 80% of the stimulation-recording combination pairs and it is modulated by the distance between recording and stimulating electrodes. Discussion Our study suggests that commonly used strategies used to validate volume conduction models based solely on simulations might give an overly optimistic idea about volume conduction model accuracy. We recommend more empirical validations to be performed to identify those factors in volume conduction models that have the highest impact on the accuracy of simulated potentials. We share the dataset to allow researchers to further investigate the mismatch between measurements and FEM models and to contribute to improving volume conduction models.
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Affiliation(s)
- Maria Carla Piastra
- Clinical Neurophysiology, Faculty of Science and Technology, Technical Medical Centre, University of Twente, Enschede, Netherlands
- Department of Cognitive Neuroscience, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, Netherlands
| | - Robert Oostenveld
- Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, Netherlands
- NatMEG, Karolinska Institutet, Stockholm, Sweden
| | - Simon Homölle
- Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, Netherlands
| | - Biao Han
- School of Psychology, South China Normal University, Guangzhou, China
| | - Qi Chen
- School of Psychology, South China Normal University, Guangzhou, China
| | - Thom Oostendorp
- Department of Cognitive Neuroscience, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, Netherlands
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Galaz Prieto F, Lahtinen J, Samavaki M, Pursiainen S. Multi-compartment head modeling in EEG: Unstructured boundary-fitted tetra meshing with subcortical structures. PLoS One 2023; 18:e0290715. [PMID: 37729152 PMCID: PMC10511141 DOI: 10.1371/journal.pone.0290715] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Accepted: 08/12/2023] [Indexed: 09/22/2023] Open
Abstract
This paper introduces an automated approach for generating a finite element (FE) discretization of a multi-compartment human head model for electroencephalographic (EEG) source localization. We aim to provide an adaptable FE mesh generation tool for EEG studies. Our technique relies on recursive solid angle labeling of a surface segmentation coupled with smoothing, refinement, inflation, and optimization procedures to enhance the mesh quality. In this study, we performed numerical meshing experiments with the three-layer Ary sphere and a magnetic resonance imaging (MRI)-based multi-compartment head segmentation which incorporates a comprehensive set of subcortical brain structures. These experiments are motivated, on one hand, by the sensitivity of non-invasive subcortical source localization to modeling errors and, on the other hand, by the present lack of open EEG software pipelines to discretize all these structures. Our approach was found to successfully produce an unstructured and boundary-fitted tetrahedral mesh with a sub-one-millimeter fitting error, providing the desired accuracy for the three-dimensional anatomical details, EEG lead field matrix, and source localization. The mesh generator applied in this study has been implemented in the open MATLAB-based Zeffiro Interface toolbox for forward and inverse processing in EEG and it allows for graphics processing unit acceleration.
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Affiliation(s)
- Fernando Galaz Prieto
- Computing Sciences, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Pirkanmaa, Finland
| | - Joonas Lahtinen
- Computing Sciences, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Pirkanmaa, Finland
| | - Maryam Samavaki
- Computing Sciences, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Pirkanmaa, Finland
| | - Sampsa Pursiainen
- Computing Sciences, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Pirkanmaa, Finland
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Lahtinen J, Moura F, Samavaki M, Siltanen S, Pursiainen S. In silicostudy of the effects of cerebral circulation on source localization using a dynamical anatomical atlas of the human head. J Neural Eng 2023; 20. [PMID: 36808911 DOI: 10.1088/1741-2552/acbdc1] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Accepted: 02/21/2023] [Indexed: 02/23/2023]
Abstract
Objective.This study focuses on the effects of dynamical vascular modeling on source localization errors in electroencephalography (EEG). Our aim of thisin silicostudy is to (a) find out the effects of cerebral circulation on the accuracy of EEG source localization estimates, and (b) evaluate its relevance with respect to measurement noise and interpatient variation.Approach.We employ a four-dimensional (3D + T) statistical atlas of the electrical properties of the human head with a cerebral circulation model to generate virtual patients with different cerebral circulatory conditions for EEG source localization analysis. As source reconstruction techniques, we use the linearly constraint minimum variance (LCMV) beamformer, standardized low-resolution brain electromagnetic tomography (sLORETA), and the dipole scan (DS).Main results.Results indicate that arterial blood flow affects source localization at different depths and with varying significance. The average flow rate plays an important role in source localization performance, while the pulsatility effects are very small. In cases where a personalized model of the head is available, blood circulation mismodeling causes localization errors, especially in the deep structures of the brain where the main cerebral arteries are located. When interpatient variations are considered, the results show differences up to 15 mm for sLORETA and LCMV beamformer and 10 mm for DS in the brainstem and entorhinal cortices regions. In regions far from the main arteries vessels, the discrepancies are smaller than 3 mm. When measurement noise is added and interpatient differences are considered in a deep dipolar source, the results indicate that the effects of conductivity mismatch are detectable even for moderate measurement noise. The signal-to-noise ratio limit for sLORETA and LCMV beamformer is 15 dB, while the limit is under 30 dB for DS.Significance.Localization of the brain activity via EEG constitutes an ill-posed inverse problem, where any modeling uncertainty, e.g. a slight amount of noise in the data or material parameter discrepancies, can lead to a significant deviation of the estimated activity, especially in the deep structures of the brain. Proper modeling of the conductivity distribution is necessary in order to obtain an appropriate source localization. In this study, we show that the conductivity of the deep brain structures is particularly impacted by blood flow-induced changes in conductivity because large arteries and veins access the brain through that region.
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Affiliation(s)
- Joonas Lahtinen
- Computing Sciences Unit, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Finland
| | - Fernando Moura
- Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland.,Engineering, Modelling and Applied Social Sciences Center, Federal University of ABC, São Bernardo do Campo, São Paulo, Brazil
| | - Maryam Samavaki
- Computing Sciences Unit, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Finland
| | - Samuli Siltanen
- Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland
| | - Sampsa Pursiainen
- Computing Sciences Unit, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Finland
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Galaz Prieto F, Rezaei A, Samavaki M, Pursiainen S. L1-norm vs. L2-norm fitting in optimizing focal multi-channel tES stimulation: linear and semidefinite programming vs. weighted least squares. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2022; 226:107084. [PMID: 36099674 DOI: 10.1016/j.cmpb.2022.107084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2021] [Revised: 08/19/2022] [Accepted: 08/22/2022] [Indexed: 06/15/2023]
Abstract
BACKGROUND AND OBJECTIVE This study focuses on Multi-Channel Transcranial Electrical Stimulation, a non-invasive brain method for stimulating neuronal activity under the influence of low-intensity currents. We introduce a mathematical formulation for finding a current pattern that optimizes an L1-norm fit between a given focal target distribution and volumetric current density inside the brain. L1-norm is well-known to favor well-localized or sparse distributions compared to L2-norm (least-squares) fitted estimates. METHODS We present a linear programming approach that performs L1-norm fitting and penalization of the current pattern (L1L1) to control the number of non-zero currents. The optimizer filters a large set of candidate solutions using a two-stage metaheuristic search from a pre-filtered set of candidates. RESULTS The numerical simulation results obtained with both 8- and 20-channel electrode montages suggest that our hypothesis on the benefits of L1-norm data fitting is valid. Compared to an L1-norm regularized L2-norm fitting (L1L2) via semidefinite programming and weighted Tikhonov least-squares method (TLS), the L1L1 results were overall preferable for maximizing the focused current density at the target position, and the ratio between focused and nuisance current magnitudes. CONCLUSIONS We propose the metaheuristic L1L1 optimization approach as a potential technique to obtain a well-localized stimulus with a controllable magnitude at a given target position. L1L1 finds a current pattern with a steep contrast between the anodal and cathodal electrodes while suppressing the nuisance currents in the brain, hence, providing a potential alternative to modulate the effects of the stimulation, e.g., the sensation experienced by the subject.
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Affiliation(s)
- Fernando Galaz Prieto
- Computing Sciences Unit, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Finland.
| | - Atena Rezaei
- Computing Sciences Unit, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Finland
| | - Maryam Samavaki
- Computing Sciences Unit, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Finland
| | - Sampsa Pursiainen
- Computing Sciences Unit, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Finland
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Bruzzone MJ, Issa NP, Wu S, Rose S, Esengul YT, Towle VL, Nordli D, Warnke PC, Tao JX. Hippocampal spikes have heterogeneous scalp EEG correlates important for defining IEDs. Epilepsy Res 2022; 182:106914. [DOI: 10.1016/j.eplepsyres.2022.106914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Revised: 02/20/2022] [Accepted: 03/27/2022] [Indexed: 11/03/2022]
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Reconstructing subcortical and cortical somatosensory activity via the RAMUS inverse source analysis technique using median nerve SEP data. Neuroimage 2021; 245:118726. [PMID: 34838947 DOI: 10.1016/j.neuroimage.2021.118726] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Revised: 10/22/2021] [Accepted: 11/12/2021] [Indexed: 11/23/2022] Open
Abstract
This study concerns reconstructing brain activity at various depths based on non-invasive EEG (electroencephalography) scalp measurements. We aimed at demonstrating the potential of the RAMUS (randomized multiresolution scanning) technique in localizing weakly distinguishable far-field sources in combination with coinciding cortical activity. As we have shown earlier theoretically and through simulations, RAMUS is a novel mathematical method that by employing the multigrid concept, allows marginalizing noise and depth bias effects and thus enables the recovery of both cortical and subcortical brain activity. To show this capability with experimental data, we examined the 14-30 ms post-stimulus somatosensory evoked potential (SEP) responses of human median nerve stimulation in three healthy adult subjects. We aim at reconstructing the different response components by evaluating a RAMUS-based estimate for the primary current density in the nervous tissue. We present source reconstructions obtained with RAMUS and compare them with the literature knowledge of the SEP components and the outcome of the unit-noise gain beamformer (UGNB) and standardized low-resolution brain electromagnetic tomography (sLORETA). We also analyzed the effect of the iterative alternating sequential technique, the optimization technique of RAMUS, compared to the classical minimum norm estimation (MNE) technique. Matching with our previous numerical studies, the current results suggest that RAMUS could have the potential to enhance the detection of simultaneous deep and cortical components and the distinction between the evoked sulcal and gyral activity.
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He Q, Pursiainen S. An extended application ‘Brain Q’ processing EEG and MEG data of finger stimulation extended from ‘Zeffiro’ based on machine learning and signal processing. COGN SYST RES 2021. [DOI: 10.1016/j.cogsys.2020.08.006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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13
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Sahonero-Alvarez G, Singh AK, Sayrafian K, Bianchi L, Roman-Gonzalez A. A Functional BCI Model by the P2731 Working Group: Transducer. BRAIN-COMPUTER INTERFACES 2021. [DOI: 10.1080/2326263x.2021.1968633] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
| | | | - Kamran Sayrafian
- Information Technology Laboratory, National Institute of Standards & Technology, Gaithersburg, USA
| | - Luigi Bianchi
- Civil Engineering and Computer Science Engineering Dept. Tor Vergata University of Rome, Rome, Italy
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14
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Moridera T, Rashed EA, Mizutani S, Hirata A. High-Resolution EEG Source Localization in Segmentation-Free Head Models Based on Finite-Difference Method and Matching Pursuit Algorithm. Front Neurosci 2021; 15:695668. [PMID: 34262433 PMCID: PMC8273249 DOI: 10.3389/fnins.2021.695668] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Accepted: 06/04/2021] [Indexed: 11/23/2022] Open
Abstract
Electroencephalogram (EEG) is a method to monitor electrophysiological activity on the scalp, which represents the macroscopic activity of the brain. However, it is challenging to identify EEG source regions inside the brain based on data measured by a scalp-attached network of electrodes. The accuracy of EEG source localization significantly depends on the type of head modeling and inverse problem solver. In this study, we adopted different models with a resolution of 0.5 mm to account for thin tissues/fluids, such as the cerebrospinal fluid (CSF) and dura. In particular, a spatially dependent conductivity (segmentation-free) model created using deep learning was developed and used for more realist representation of electrical conductivity. We then adopted a multi-grid-based finite-difference method (FDM) for forward problem analysis and a sparse-based algorithm to solve the inverse problem. This enabled us to perform efficient source localization using high-resolution model with a reasonable computational cost. Results indicated that the abrupt spatial change in conductivity, inherent in conventional segmentation-based head models, may trigger source localization error accumulation. The accurate modeling of the CSF, whose conductivity is the highest in the head, was an important factor affecting localization accuracy. Moreover, computational experiments with different noise levels and electrode setups demonstrate the robustness of the proposed method with segmentation-free head model.
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Affiliation(s)
- Takayoshi Moridera
- Department of Electrical and Mechanical Engineering, Nagoya Institute of Technology, Nagoya, Japan
| | - Essam A Rashed
- Department of Electrical and Mechanical Engineering, Nagoya Institute of Technology, Nagoya, Japan.,Department of Mathematics, Faculty of Science, Suez Canal University, Ismailia, Egypt
| | - Shogo Mizutani
- Department of Electrical and Mechanical Engineering, Nagoya Institute of Technology, Nagoya, Japan
| | - Akimasa Hirata
- Department of Electrical and Mechanical Engineering, Nagoya Institute of Technology, Nagoya, Japan.,Center of Biomedical Physics and Information Technology, Nagoya Institute of Technology, Nagoya, Japan
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15
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Advances in Electrical Source Imaging: A Review of the Current Approaches, Applications and Challenges. SIGNALS 2021. [DOI: 10.3390/signals2030024] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Brain source localization has been consistently implemented over the recent years to elucidate complex brain operations, pairing the high temporal resolution of the EEG with the high spatial estimation of the estimated sources. This review paper aims to present the basic principles of Electrical source imaging (ESI) in the context of the recent progress for solving the forward and the inverse problems, and highlight the advantages and limitations of the different approaches. As such, a synthesis of the current state-of-the-art methodological aspects is provided, offering a complete overview of the present advances with regard to the ESI solutions. Moreover, the new dimensions for the analysis of the brain processes are indicated in terms of clinical and cognitive ESI applications, while the prevailing challenges and limitations are thoroughly discussed, providing insights for future approaches that could help to alleviate methodological and technical shortcomings.
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16
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Schrader S, Westhoff A, Piastra MC, Miinalainen T, Pursiainen S, Vorwerk J, Brinck H, Wolters CH, Engwer C. DUNEuro-A software toolbox for forward modeling in bioelectromagnetism. PLoS One 2021; 16:e0252431. [PMID: 34086715 PMCID: PMC8177522 DOI: 10.1371/journal.pone.0252431] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Accepted: 05/14/2021] [Indexed: 01/19/2023] Open
Abstract
Accurate and efficient source analysis in electro- and magnetoencephalography using sophisticated realistic head geometries requires advanced numerical approaches. This paper presents DUNEuro, a free and open-source C++ software toolbox for the numerical computation of forward solutions in bioelectromagnetism. Building upon the DUNE framework, it provides implementations of modern fitted and unfitted finite element methods to efficiently solve the forward problems of electro- and magnetoencephalography. The user can choose between a variety of different source models that are implemented. The software's aim is to provide interfaces that are extendable and easy-to-use. In order to enable a closer integration into existing analysis pipelines, interfaces to Python and MATLAB are provided. The practical use is demonstrated by a source analysis example of somatosensory evoked potentials using a realistic six-compartment head model. Detailed installation instructions and example scripts using spherical and realistic head models are appended.
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Affiliation(s)
- Sophie Schrader
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Munster, Germany
| | - Andreas Westhoff
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Munster, Germany
- Applied Mathematics: Institute for Analysis and Numerics, University of Münster, Munster, Germany
- Institute for Bioinformatics and Chemoinformatics, Westphalian University of Applied Sciences, Gelsenkirchen, Germany
| | - Maria Carla Piastra
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Munster, Germany
- Applied Mathematics: Institute for Analysis and Numerics, University of Münster, Munster, Germany
- Radboud University Nijmegen Medical Centre, Donders Institute for Brain, Cognition and Behaviour, Nijmegen, The Netherlands
| | - Tuuli Miinalainen
- Computing Sciences, Tampere University, Tampere, Finland
- Department of Applied Physics, University of Eastern Finland, Kuopio, Finland
| | | | - Johannes Vorwerk
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Munster, Germany
- Institute of Electrical and Biomedical Engineering, UMIT - Private University for Health Sciences, Medical Informatics and Technology, Hall in Tyrol, Austria
| | - Heinrich Brinck
- Institute for Bioinformatics and Chemoinformatics, Westphalian University of Applied Sciences, Gelsenkirchen, Germany
| | - Carsten H. Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Munster, Germany
- Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, Munster, Germany
| | - Christian Engwer
- Applied Mathematics: Institute for Analysis and Numerics, University of Münster, Munster, Germany
- * E-mail:
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17
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Piastra MC, Nüßing A, Vorwerk J, Clerc M, Engwer C, Wolters CH. A comprehensive study on electroencephalography and magnetoencephalography sensitivity to cortical and subcortical sources. Hum Brain Mapp 2021; 42:978-992. [PMID: 33156569 PMCID: PMC7856654 DOI: 10.1002/hbm.25272] [Citation(s) in RCA: 40] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 10/19/2020] [Accepted: 10/21/2020] [Indexed: 12/31/2022] Open
Abstract
Signal-to-noise ratio (SNR) maps are a good way to visualize electroencephalography (EEG) and magnetoencephalography (MEG) sensitivity. SNR maps extend the knowledge about the modulation of EEG and MEG signals by source locations and orientations and can therefore help to better understand and interpret measured signals as well as source reconstruction results thereof. Our work has two main objectives. First, we investigated the accuracy and reliability of EEG and MEG finite element method (FEM)-based sensitivity maps for three different head models, namely an isotropic three and four-compartment and an anisotropic six-compartment head model. As a result, we found that ignoring the cerebrospinal fluid leads to an overestimation of EEG SNR values. Second, we examined and compared EEG and MEG SNR mappings for both cortical and subcortical sources and their modulation by source location and orientation. Our results for cortical sources show that EEG sensitivity is higher for radial and deep sources and MEG for tangential ones, which are the majority of sources. As to the subcortical sources, we found that deep sources with sufficient tangential source orientation are recordable by the MEG. Our work, which represents the first comprehensive study where cortical and subcortical sources are considered in highly detailed FEM-based EEG and MEG SNR mappings, sheds a new light on the sensitivity of EEG and MEG and might influence the decision of brain researchers or clinicians in their choice of the best modality for their experiment or diagnostics, respectively.
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Affiliation(s)
- Maria Carla Piastra
- Institute for Biomagnetism and BiosignalanalysisUniversity of MünsterMünsterGermany
- Institute for Computational and Applied MathematicsUniversity of MünsterMünsterGermany
- Cognitive Neuroscience, Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen Medical CenterNijmegenThe Netherlands
| | - Andreas Nüßing
- Institute for Biomagnetism and BiosignalanalysisUniversity of MünsterMünsterGermany
- Institute for Computational and Applied MathematicsUniversity of MünsterMünsterGermany
| | - Johannes Vorwerk
- Institute of Electrical and Biomedical Engineering, University for Health SciencesMedical Informatics and TechnologyHall in TirolAustria
| | - Maureen Clerc
- Inria Sophia Antipolis‐MediterranéeBiotFrance
- Université Côte d'AzurNiceFrance
| | - Christian Engwer
- Institute for Computational and Applied MathematicsUniversity of MünsterMünsterGermany
- Cluster of Excellence EXC 1003, Cells in Motion, CiM, University of MünsterMünsterGermany
| | - Carsten H. Wolters
- Institute for Biomagnetism and BiosignalanalysisUniversity of MünsterMünsterGermany
- Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of MünsterMünsterGermany
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18
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Rezaei A, Antonakakis M, Piastra M, Wolters CH, Pursiainen S. Parametrizing the Conditionally Gaussian Prior Model for Source Localization with Reference to the P20/N20 Component of Median Nerve SEP/SEF. Brain Sci 2020; 10:E934. [PMID: 33287441 PMCID: PMC7761863 DOI: 10.3390/brainsci10120934] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Revised: 11/17/2020] [Accepted: 11/25/2020] [Indexed: 11/17/2022] Open
Abstract
In this article, we focused on developing the conditionally Gaussian hierarchical Bayesian model (CG-HBM), which forms a superclass of several inversion methods for source localization of brain activity using somatosensory evoked potential (SEP) and field (SEF) measurements. The goal of this proof-of-concept study was to improve the applicability of the CG-HBM as a superclass by proposing a robust approach for the parametrization of focal source scenarios. We aimed at a parametrization that is invariant with respect to altering the noise level and the source space size. The posterior difference between the gamma and inverse gamma hyperprior was minimized by optimizing the shape parameter, while a suitable range for the scale parameter can be obtained via the prior-over-measurement signal-to-noise ratio, which we introduce as a new concept in this study. In the source localization experiments, the primary generator of the P20/N20 component was detected in the Brodmann area 3b using the CG-HBM approach and a parameter range derived from the existing knowledge of the Tikhonov-regularized minimum norm estimate, i.e., the classical Gaussian prior model. Moreover, it seems that the detection of deep thalamic activity simultaneously with the P20/N20 component with the gamma hyperprior can be enhanced while using a close-to-optimal shape parameter value.
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Affiliation(s)
- Atena Rezaei
- Computing Sciences, Faculty of Information Technology and Communication Sciences, Tampere University, Hervanta Campus, P.O. Box 1001, 33014 Tampere, Finland;
| | - Marios Antonakakis
- Institute of Biomagnetism and Biosignalanalysis, University of Münster, Malmedyweg 15, D-48149 Münster, Germany; (M.A.); (M.P.); (C.H.W.)
| | - MariaCarla Piastra
- Institute of Biomagnetism and Biosignalanalysis, University of Münster, Malmedyweg 15, D-48149 Münster, Germany; (M.A.); (M.P.); (C.H.W.)
- Cognitive Neuroscience, Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen Medical Centre, Kapittelweg 29, 6525 EN Nijmegen, The Netherlands
| | - Carsten H. Wolters
- Institute of Biomagnetism and Biosignalanalysis, University of Münster, Malmedyweg 15, D-48149 Münster, Germany; (M.A.); (M.P.); (C.H.W.)
- Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, 48149 Münster, Germany
| | - Sampsa Pursiainen
- Computing Sciences, Faculty of Information Technology and Communication Sciences, Tampere University, Hervanta Campus, P.O. Box 1001, 33014 Tampere, Finland;
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19
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Malovichko M, Koshev N, Yavich N, Razorenova A, Fedorov M. Electroencephalographic Source Reconstruction by the Finite-Element Approximation of the Elliptic Cauchy Problem. IEEE Trans Biomed Eng 2020; 68:1811-1819. [PMID: 32877329 DOI: 10.1109/tbme.2020.3021359] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
OBJECTIVE This paper develops a novel approach for fast and reliable reconstruction of EEG sources in MRI-based head models. METHODS The inverse EEG problem is reduced to the Cauchy problem for an elliptic partial-derivative equation. The problem is transformed into a regularized minimax problem, which is directly approximated in a finite-element space. The resulting numerical method is efficient and easy to program. It eliminates the need to solve forward problems, which can be a tedious task. The method applies to complex anatomical head models, possibly containing holes in surfaces, anisotropic conductivity, and conductivity variations inside each tissue. The method has been verified on a spherical shell model and an MRI-based head. RESULTS Numerical experiments indicate high accuracy of localization of brain activations (both cortical potential and current) and rapid execution time. CONCLUSION This study demonstrates that the proposed approach is feasible for EEG source analysis and can serve as a rapid and reliable tool for EEG source analysis. SIGNIFICANCE The significance of this study is that it develops a fast, accurate, and simple numerical method of EEG source analysis, applicable to almost arbitrary complex head models.
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20
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He Q, Rezaei A, Pursiainen S. Zeffiro User Interface for Electromagnetic Brain Imaging: a GPU Accelerated FEM Tool for Forward and Inverse Computations in Matlab. Neuroinformatics 2020; 18:237-250. [PMID: 31598847 PMCID: PMC7083809 DOI: 10.1007/s12021-019-09436-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
This article introduces the Zeffiro interface (ZI) version 2.2 for brain imaging. ZI aims to provide a simple, accessible and multimodal open source platform for finite element method (FEM) based and graphics processing unit (GPU) accelerated forward and inverse computations in the Matlab environment. It allows one to (1) generate a given multi-compartment head model, (2) to evaluate a lead field matrix as well as (3) to invert and analyze a given set of measurements. GPU acceleration is applied in each of the processing stages (1)-(3). In its current configuration, ZI includes forward solvers for electro-/magnetoencephalography (EEG) and linearized electrical impedance tomography (EIT) as well as a set of inverse solvers based on the hierarchical Bayesian model (HBM). We report the results of EEG and EIT inversion tests performed with real and synthetic data, respectively, and demonstrate numerically how the inversion parameters affect the EEG inversion outcome in HBM. The GPU acceleration was found to be essential in the generation of the FE mesh and the LF matrix in order to achieve a reasonable computing time. The code package can be extended in the future based on the directions given in this article.
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Affiliation(s)
- Q. He
- Information Technology, Faculty of Information Technology and Communication Sciences, Tampere University, P.O. Box 692, 33014 Tampere, Finland
| | - A. Rezaei
- Mathematics and Statistics, Faculty of Information Technology and Communication Sciences, Tampere University, P.O. Box 692, 33014 Tampere, Finland
| | - S. Pursiainen
- Mathematics and Statistics, Faculty of Information Technology and Communication Sciences, Tampere University, P.O. Box 692, 33014 Tampere, Finland
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21
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Rezaei A, Koulouri A, Pursiainen S. Randomized Multiresolution Scanning in Focal and Fast E/MEG Sensing of Brain Activity with a Variable Depth. Brain Topogr 2020; 33:161-175. [PMID: 32076899 PMCID: PMC7066097 DOI: 10.1007/s10548-020-00755-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2019] [Accepted: 02/04/2020] [Indexed: 11/28/2022]
Abstract
We focus on electro-/magnetoencephalography imaging of the neural activity and, in particular, finding a robust estimate for the primary current distribution via the hierarchical Bayesian model (HBM). Our aim is to develop a reasonably fast maximum a posteriori (MAP) estimation technique which would be applicable for both superficial and deep areas without specific a priori knowledge of the number or location of the activity. To enable source distinguishability for any depth, we introduce a randomized multiresolution scanning (RAMUS) approach in which the MAP estimate of the brain activity is varied during the reconstruction process. RAMUS aims to provide a robust and accurate imaging outcome for the whole brain, while maintaining the computational cost on an appropriate level. The inverse gamma (IG) distribution is applied as the primary hyperprior in order to achieve an optimal performance for the deep part of the brain. In this proof-of-the-concept study, we consider the detection of simultaneous thalamic and somatosensory activity via numerically simulated data modeling the 14-20 ms post-stimulus somatosensory evoked potential and field response to electrical wrist stimulation. Both a spherical and realistic model are utilized to analyze the source reconstruction discrepancies. In the numerically examined case, RAMUS was observed to enhance the visibility of deep components and also marginalizing the random effects of the discretization and optimization without a remarkable computation cost. A robust and accurate MAP estimate for the primary current density was obtained in both superficial and deep parts of the brain.
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Affiliation(s)
- A Rezaei
- Faculty of Information Technology and Communication Sciences, Tampere University, P.O. Box 692, 33101, Tampere, Finland.
| | - A Koulouri
- Faculty of Information Technology and Communication Sciences, Tampere University, P.O. Box 692, 33101, Tampere, Finland
| | - S Pursiainen
- Faculty of Information Technology and Communication Sciences, Tampere University, P.O. Box 692, 33101, Tampere, Finland
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22
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Hashemzadeh P, Fokas AS, Schönlieb CB. A hybrid analytical–numerical algorithm for determining the neuronal current via electroencephalography. J R Soc Interface 2020. [DOI: 10.1098/rsif.2019.0831] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Specific mental processes are associated with brain activation of a unique form, which are, in turn, expressed via the generation of specific neuronal electric currents. Electroencephalography (EEG) is based on measurements on the scalp of the electric potential generated by the neuronal current flowing in the cortex. This specific form of EEG data has been employed for a plethora of medical applications, from sleep studies to diagnosing focal epilepsy. In recent years, there have been efforts to use EEG data for a more ambitious purpose, namely to determine the underlying neuronal current. Although it has been known since 1853, from the studies by Helmholtz, that the knowledge of the electric potential of the external surface of a conductor is insufficient for the determination of the electric current that gave rise to this potential, the important question of which part of the current can actually be determined from the knowledge of this potential remained open until work published in 1997, when it was shown that EEG provides information only about the irrotational part of the current, which will be denoted by
Ψ
; moreover, an explicit formula was derived in the above work relating this part of the current, the measured electric potential, and a certain auxiliary function,
v
s
, that depends on the geometry of the various compartments of the brain–head system and their conductivities. In the present paper: (i) Motivated by recent results which show that, in the case of ellipsoidal geometry, the assumption of the
L
2
minimization of the current yields a unique solution, we derive an analogous analytic formula characterizing this minimization for arbitrary geometry. (ii) We show that the above auxiliary function can be computed numerically via a line integral from the values of a related function
v
s
computed via OpenMEEG; moreover, we propose an alternative approach to computing the auxiliary function
v
s
based on the construction of a certain surrogate model. (iii) By expanding
Ψ
in terms of an inverse multiquadric radial basis we implement the relevant formulae numerically. The above algorithm performs well for synthetic data; its implementation with real data only requires the knowledge of the coordinates of the positions where the given EEG data are obtained.
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Affiliation(s)
- Parham Hashemzadeh
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge CB3 0WA, UK
- Bryant University Zhuhai, Beijing Institute of Technology, No. 6 Jinfeng Road, Tangjiwan, Xiangzhou District, Zhuhai, Guangdong 519088, People’s Republic of China
| | - A. S. Fokas
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge CB3 0WA, UK
- Department of Electrical Engineering, University of Southern California, Los Angeles, CA 90089, USA
| | - C. B. Schönlieb
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge CB3 0WA, UK
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Vorwerk J, Hanrath A, Wolters CH, Grasedyck L. The multipole approach for EEG forward modeling using the finite element method. Neuroimage 2019; 201:116039. [PMID: 31369809 DOI: 10.1016/j.neuroimage.2019.116039] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2019] [Revised: 06/14/2019] [Accepted: 07/19/2019] [Indexed: 01/19/2023] Open
Abstract
For accurate EEG forward solutions, it is necessary to apply numerical methods that allow to take into account the realistic geometry of the subject's head. A commonly used method to solve this task is the finite element method (FEM). Different approaches have been developed to obtain EEG forward solutions for dipolar sources with the FEM. The St. Venant approach is frequently applied, since its high numerical accuracy and stability as well as its computational efficiency was demonstrated in multiple comparison studies. In this manuscript, we propose a variation of the St. Venant approach, the multipole approach, to improve the numerical accuracy of the St. Venant approach even further and to allow for the simulation of additional source scenarios, such as quadrupolar sources. Exploiting the multipole expansion of electric fields, we demonstrate that the newly proposed multipole approach achieves even higher numerical accuracies than the St. Venant approach in both multi-layer sphere and realistic head models. Additionally, we exemplarily show that the multipole approach allows to not only simulate dipolar but also quadrupolar sources.
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Affiliation(s)
- Johannes Vorwerk
- Institute of Electrical and Biomedical Engineering, UMIT - Private University for Health Sciences, Medical Informatics and Technology, Hall in Tirol, Austria; Institute for Biomagnetism and Biosignalanalysis, University of Münster, Münster, Germany.
| | - Anne Hanrath
- Institut für Geometrie und Praktische Mathematik, RWTH Aachen, Aachen, Germany
| | - Carsten H Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Münster, Germany; Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, Münster, Germany
| | - Lars Grasedyck
- Institut für Geometrie und Praktische Mathematik, RWTH Aachen, Aachen, Germany
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24
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Chai MT, Amin HU, Izhar LI, Saad MNM, Abdul Rahman M, Malik AS, Tang TB. Exploring EEG Effective Connectivity Network in Estimating Influence of Color on Emotion and Memory. Front Neuroinform 2019; 13:66. [PMID: 31649522 PMCID: PMC6794354 DOI: 10.3389/fninf.2019.00066] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2019] [Accepted: 09/18/2019] [Indexed: 11/20/2022] Open
Abstract
Color is a perceptual stimulus that has a significant impact on improving human emotion and memory. Studies have revealed that colored multimedia learning materials (MLMs) have a positive effect on learner's emotion and learning where it was assessed by subjective/objective measurements. This study aimed to quantitatively assess the influence of colored MLMs on emotion, cognitive processes during learning, and long-term memory (LTM) retention using electroencephalography (EEG). The dataset consisted of 45 healthy participants, and MLMs were designed in colored or achromatic illustrations to elicit emotion and that to assess its impact on LTM retention after 30-min and 1-month delay. The EEG signal analysis was first started to estimate the effective connectivity network (ECN) using the phase slope index and expand it to characterize the ECN pattern using graph theoretical analysis. EEG results showed that colored MLMs had influences on theta and alpha networks, including (1) an increased frontal-parietal connectivity (top-down processing), (2) a larger number of brain hubs, (3) a lower clustering coefficient, and (4) a higher local efficiency, indicating that color influences information processing in the brain, as reflected by ECN, together with a significant improvement in learner's emotion and memory performance. This is evidenced by a more positive emotional valence and higher recall accuracy for groups who learned with colored MLMs than that of achromatic MLMs. In conclusion, this paper demonstrated how the EEG ECN parameters could help quantify the influences of colored MLMs on emotion and cognitive processes during learning.
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Affiliation(s)
- Meei Tyng Chai
- Centre for Intelligent Signal and Imaging Research, Department of Electrical and Electronic Engineering, Universiti Teknologi PETRONAS, Seri Iskandar, Malaysia
| | - Hafeez Ullah Amin
- Centre for Intelligent Signal and Imaging Research, Department of Electrical and Electronic Engineering, Universiti Teknologi PETRONAS, Seri Iskandar, Malaysia
| | - Lila Iznita Izhar
- Centre for Intelligent Signal and Imaging Research, Department of Electrical and Electronic Engineering, Universiti Teknologi PETRONAS, Seri Iskandar, Malaysia
| | - Mohamad Naufal Mohamad Saad
- Centre for Intelligent Signal and Imaging Research, Department of Electrical and Electronic Engineering, Universiti Teknologi PETRONAS, Seri Iskandar, Malaysia
| | - Mohammad Abdul Rahman
- Faculty of Medicine, Royal College of Medicine Perak, Universiti Kuala Lumpur, Ipoh, Malaysia
| | | | - Tong Boon Tang
- Centre for Intelligent Signal and Imaging Research, Department of Electrical and Electronic Engineering, Universiti Teknologi PETRONAS, Seri Iskandar, Malaysia
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