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Fu Q, Chen T, Wang Y, Zhou H, Zhang K, Zheng R, Zhang Y, Liu R, Yin X, Liu G, Xu Y. Plasmopara viticola effector PvCRN20 represses the import of VvDEG5 into chloroplasts to suppress immunity in grapevine. THE NEW PHYTOLOGIST 2024; 243:2311-2331. [PMID: 39091140 DOI: 10.1111/nph.20002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Accepted: 07/03/2024] [Indexed: 08/04/2024]
Abstract
Chloroplasts play a crucial role in plant defense against pathogens, making them primary targets for pathogen effectors that suppress host immunity. This study characterizes the Plasmopara viticola CRN-like effector, PvCRN20, which interacts with DEG5 in the cytoplasm but not with its interacting protein, DEG8, which is located in the chloroplast. By transiently overexpressing in tobacco leaves, we show that PvCRN20 could inhibit INF1- and Bax-triggered cell death. Constitutive expression of PvCRN20 suppresses the accumulation of reactive oxygen species (ROS) and promotes pathogen colonization. PvCRN20 reduces DEG5 entry into chloroplasts, thereby disrupting DEG5 and DEG8 interactions in chloroplasts. Overexpression of VvDEG5 and VvDEG8 induces ROS accumulation and enhances grapevine resistance to P. viticola, whereas knockout of VvDEG8 represses ROS production and promotes P. viticola colonization. Consistently, ectopic expression of VvDEG5 and VvDEG8 in tobacco promotes chloroplast-derived ROS accumulation, whereas co-expression of PvCRN20 counteracted this promotion by VvDEG5. Therefore, DEG5 is essential for the virulence function of PvCRN20. Although PvCRN20 is located in both the nucleus and cytoplasm, only cytoplasmic PvCRN20 suppresses plant immunity and promotes pathogen infection. Our results reveal that PvCRN20 dampens plant defenses by repressing the chloroplast import of DEG5, thus reducing host ROS accumulation and facilitating pathogen colonization.
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Affiliation(s)
- Qingqing Fu
- State Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China
- Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Tingting Chen
- College of Agricultural Science, Xichang University, Xichang, 615000, China
| | - Yunlei Wang
- State Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China
- Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Huixuan Zhou
- State Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China
- Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Kangzhuang Zhang
- State Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China
- Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Runlong Zheng
- State Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China
- Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Yanan Zhang
- State Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China
- Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Ruiqi Liu
- State Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China
- Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Xiao Yin
- State Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China
- Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Guotian Liu
- State Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China
- Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Yan Xu
- State Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China
- Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi, 712100, China
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Qu L, Huang X, Su X, Zhu G, Zheng L, Lin J, Wang J, Xue H. Potato: from functional genomics to genetic improvement. MOLECULAR HORTICULTURE 2024; 4:34. [PMID: 39160633 PMCID: PMC11331666 DOI: 10.1186/s43897-024-00105-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Accepted: 07/17/2024] [Indexed: 08/21/2024]
Abstract
Potato is the most widely grown non-grain crop and ranks as the third most significant global food crop following rice and wheat. Despite its long history of cultivation over vast areas, slow breeding progress and environmental stress have led to a scarcity of high-yielding potato varieties. Enhancing the quality and yield of potato tubers remains the ultimate objective of potato breeding. However, conventional breeding has faced challenges due to tetrasomic inheritance, high genomic heterozygosity, and inbreeding depression. Recent advancements in molecular biology and functional genomic studies of potato have provided valuable insights into the regulatory network of physiological processes and facilitated trait improvement. In this review, we present a summary of identified factors and genes governing potato growth and development, along with progress in potato genomics and the adoption of new breeding technologies for improvement. Additionally, we explore the opportunities and challenges in potato improvement, offering insights into future avenues for potato research.
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Affiliation(s)
- Li Qu
- Shanghai Collaborative Innovation Center of Agri-Seeds, Joint Center for Single Cell Biology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Xueqing Huang
- Shanghai Collaborative Innovation Center of Agri-Seeds, Joint Center for Single Cell Biology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Xin Su
- Shanghai Collaborative Innovation Center of Agri-Seeds, Joint Center for Single Cell Biology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Guoqing Zhu
- Shanghai Collaborative Innovation Center of Agri-Seeds, Joint Center for Single Cell Biology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Lingli Zheng
- Shanghai Collaborative Innovation Center of Agri-Seeds, Joint Center for Single Cell Biology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Jing Lin
- Shanghai Collaborative Innovation Center of Agri-Seeds, Joint Center for Single Cell Biology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Jiawen Wang
- Shanghai Collaborative Innovation Center of Agri-Seeds, Joint Center for Single Cell Biology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Hongwei Xue
- Shanghai Collaborative Innovation Center of Agri-Seeds, Joint Center for Single Cell Biology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
- Guangdong Laboratory for Lingnan Modern Agriculture, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China.
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3
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Ghimire B, Gogoi A, Poudel M, Stensvand A, Brurberg MB. Transcriptome analysis of Phytophthora cactorum infecting strawberry identified RXLR effectors that induce cell death when transiently expressed in Nicotiana benthamiana. FRONTIERS IN PLANT SCIENCE 2024; 15:1379970. [PMID: 38855473 PMCID: PMC11157022 DOI: 10.3389/fpls.2024.1379970] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 05/06/2024] [Indexed: 06/11/2024]
Abstract
Phytophthora cactorum is a plant pathogenic oomycete that causes crown rot in strawberry leading to significant economic losses every year. To invade the host, P. cactorum secretes an arsenal of effectors that can manipulate host physiology and impair its defense system promoting infection. A transcriptome analysis was conducted on a susceptible wild strawberry genotype (Fragaria vesca) 48 hours post inoculation with P. cactorum to identify effectors expressed during the early infection stage. The analysis revealed 4,668 P. cactorum genes expressed during infection of F. vesca. A total of 539 secreted proteins encoded by transcripts were identified, including 120 carbohydrate-active enzymes, 40 RXLRs, 23 proteolytic enzymes, nine elicitins, seven cysteine rich proteins, seven necrosis inducing proteins and 216 hypothetical proteins with unknown function. Twenty of the 40 RXLR effector candidates were transiently expressed in Nicotiana benthamiana using agroinfiltration and five previously unreported RXLR effector genes (Pc741, Pc8318, Pc10890, Pc20813, and Pc22290) triggered cell death when transiently expressed. The identified cell death inducing RXLR effectors showed 31-66% identity to known RXLR effectors in different Phytophthora species having roles in pathogenicity including both activation and suppression of defense response in the host. Furthermore, homology analysis revealed that these cell death inducing RXLR effectors were highly conserved (82 - 100% identity) across 23 different strains of P. cactorum originating from apple or strawberry.
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Affiliation(s)
- Bikal Ghimire
- Department of Plant Sciences, Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), Ås, Norway
| | - Anupam Gogoi
- Department of Plant Sciences, Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), Ås, Norway
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås, Norway
| | - Mandeep Poudel
- Department of Plant Sciences, Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), Ås, Norway
| | - Arne Stensvand
- Department of Plant Sciences, Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), Ås, Norway
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås, Norway
| | - May Bente Brurberg
- Department of Plant Sciences, Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), Ås, Norway
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås, Norway
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Han M, Wang C, Zhu W, Pan Y, Huang L, Nie J. Extracellular perception of multiple novel core effectors from the broad host-range pear anthracnose pathogen Colletotrichum fructicola in the nonhost Nicotiana benthamiana. HORTICULTURE RESEARCH 2024; 11:uhae078. [PMID: 38766536 PMCID: PMC11101317 DOI: 10.1093/hr/uhae078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Accepted: 03/03/2024] [Indexed: 05/22/2024]
Abstract
Colletotrichum fructicola is emerging as a devastating pathogenic fungus causing anthracnose in a wide range of horticultural crops, particularly fruits. Exploitation of nonhost resistance (NHR) represents a robust strategy for plant disease management. Perception of core effectors from phytopathogens frequently leads to hypersensitive cell death and resistance in nonhost plants; however, such core effectors in C. fructicola and their signaling components in non-hosts remain elusive. Here, we found a virulent C. fructicola strain isolated from pear exhibits non-adaptation in the model plant Nicotiana benthamiana. Perception of secreted molecules from C. fructicola appears to be a dominant factor in NHR, and four novel core effectors-CfCE4, CfCE25, CfCE61, and CfCE66-detected by N. benthamiana were, accordingly, identified. These core effectors exhibit cell death-inducing activity in N. benthamiana and accumulate in the apoplast. With a series of CRISPR/Cas9-edited mutants or gene-silenced plants, we found the coreceptor BAK1 and helper NLRs including ADR1, NRG1, and NRCs mediate perceptions of these core effectors in N. benthamiana. Concurrently, multiple N. benthamiana genes encoding cell surface immune receptors and intracellular immune receptors were greatly induced by C. fructicola. This work represents the first characterization of the repertoire of C. fructicola core effectors responsible for NHR. Significantly, the novel core effectors and their signaling components unveiled in this study offered insights into a continuum of layered immunity during NHR and will be helpful for anthracnose disease management in diverse horticultural crops.
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Affiliation(s)
- Mengqing Han
- Anhui Province Key Laboratory of Crop Integrated Pest Management, Anhui Agricultural University, Hefei 230036, China
| | - Chunhao Wang
- Anhui Province Key Laboratory of Crop Integrated Pest Management, Anhui Agricultural University, Hefei 230036, China
| | - Wenhui Zhu
- Anhui Province Key Laboratory of Crop Integrated Pest Management, Anhui Agricultural University, Hefei 230036, China
| | - Yuemin Pan
- Anhui Province Key Laboratory of Crop Integrated Pest Management, Anhui Agricultural University, Hefei 230036, China
| | - Lili Huang
- State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Jiajun Nie
- Anhui Province Key Laboratory of Crop Integrated Pest Management, Anhui Agricultural University, Hefei 230036, China
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Zhang J, Huang X, Yang S, Huang A, Ren J, Luo X, Feng S, Li P, Li Z, Dong P. Endophytic Bacillus subtilis H17-16 effectively inhibits Phytophthora infestans, the pathogen of potato late blight, and its potential application. PEST MANAGEMENT SCIENCE 2023; 79:5073-5086. [PMID: 37572366 DOI: 10.1002/ps.7717] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 08/03/2023] [Accepted: 08/13/2023] [Indexed: 08/14/2023]
Abstract
BACKGROUND As a highly prevalent epidemic disease of potato, late blight caused by Phytophthora infestans poses a serious threat to potato yield and quality. At present, chemical fungicides are mainly used to control potato late blight, but long-term overuse of chemical fungicides may lead to environmental pollution and human health threats. Endophytes, natural resources for plant diseases control, can promote plant growth, enhance plant resistance, and secrete antifungal substances. Therefore, there is an urgent need to find some beneficial endophytes to control potato late blight. RESULTS We isolated a strain of Bacillus subtilis H17-16 from potato healthy roots. It can significantly inhibit mycelial growth, sporangia germination and the pathogenicity of Phytophthora infestans, induce the resistance of potato to late blight, and promote potato growth. In addition, H17-16 has the ability to produce protease, volatile compounds (VOCs) and form biofilms. After H17-16 treatment, most of the genes involved in metabolism, virulence and drug resistance of Phytophthora infestans were down-regulated significantly, and the genes related to ribosome biogenesis were mainly up-regulated. Moreover, field and postharvest application of H17-16 can effectively reduce the occurrence of potato late blight, and the combination of H17-16 with chitosan or chemical fungicides had a better effect than single H17-16. CONCLUSION Our results reveal that Bacillus subtilis H17-16 has great potential as a natural fungicide for controlling potato late blight, laying a theoretical basis for its development as a biological control agent. © 2023 Society of Chemical Industry.
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Affiliation(s)
- Jiaomei Zhang
- School of Life Sciences, Chongqing University, Chongqing, China
- Chongqing Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops, Chongqing, China
| | - Xiaoqing Huang
- School of Life Sciences, Chongqing University, Chongqing, China
- Chongqing Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops, Chongqing, China
| | - Shidong Yang
- Shandong Nongdeli Biotechnology Co., Ltd, Jinan, China
| | - Airong Huang
- School of Life Sciences, Chongqing University, Chongqing, China
- Chongqing Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops, Chongqing, China
| | - Jie Ren
- School of Life Sciences, Chongqing University, Chongqing, China
- Chongqing Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops, Chongqing, China
| | - Xunguang Luo
- School of Life Sciences, Chongqing University, Chongqing, China
- Chongqing Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops, Chongqing, China
| | - Shun Feng
- School of Life Sciences, Chongqing University, Chongqing, China
- Chongqing Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops, Chongqing, China
| | - Peihua Li
- College of Agronomy, Xichang University, Xichang, China
| | - Zhengguo Li
- School of Life Sciences, Chongqing University, Chongqing, China
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, Chongqing, China
| | - Pan Dong
- School of Life Sciences, Chongqing University, Chongqing, China
- Chongqing Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops, Chongqing, China
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Gao H, Guo Y, Ren M, Tang L, Gao W, Tian S, Shao G, Peng Q, Gu B, Miao J, Liu X. Phytophthora RxLR effector PcSnel4B promotes degradation of resistance protein AtRPS2. PLANT PHYSIOLOGY 2023; 193:1547-1560. [PMID: 37429009 DOI: 10.1093/plphys/kiad404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2023] [Revised: 05/19/2023] [Accepted: 05/23/2023] [Indexed: 07/12/2023]
Abstract
Phytophthora capsici deploys effector proteins to manipulate host immunity and facilitate its colonization. However, the underlying mechanisms remain largely unclear. In this study, we demonstrated that a Sne-like (Snel) RxLR effector gene PcSnel4 is highly expressed at the early stages of P. capsici infection in Nicotiana benthamiana. Knocking out both alleles of PcSnel4 attenuated the virulence of P. capsici, while expression of PcSnel4 promoted its colonization in N. benthamiana. PcSnel4B could suppress the hypersensitive reaction (HR) induced by Avr3a-R3a and RESISTANCE TO PSEUDOMONAS SYRINGAE 2 (AtRPS2), but it did not suppress cell death elicited by Phytophthora infestin 1 (INF1) and Crinkler 4 (CRN4). COP9 signalosome 5 (CSN5) in N. benthamiana was identified as a host target of PcSnel4. Silencing NbCSN5 compromised the cell death induced by AtRPS2. PcSnel4B impaired the interaction and colocalization of Cullin1 (CUL1) and CSN5 in vivo. Expression of AtCUL1 promoted the degradation of AtRPS2 and disrupted HR, while AtCSN5a stabilized AtRPS2 and promoted HR, regardless of the expression of AtCUL1. PcSnel4 counteracted the effect of AtCSN5 and enhanced the degradation of AtRPS2, resulting in HR suppression. This study deciphered the underlying mechanism of PcSnel4-mediated suppression of HR induced by AtRPS2.
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Affiliation(s)
- Huhu Gao
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Yuchen Guo
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Mengyuan Ren
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Lijun Tang
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Wenxin Gao
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Song Tian
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Guangda Shao
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Qin Peng
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Biao Gu
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Jianqiang Miao
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Xili Liu
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
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Gogoi A, Rossmann SL, Lysøe E, Stensvand A, Brurberg MB. Genome analysis of Phytophthora cactorum strains associated with crown- and leather-rot in strawberry. Front Microbiol 2023; 14:1214924. [PMID: 37465018 PMCID: PMC10351607 DOI: 10.3389/fmicb.2023.1214924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Accepted: 06/12/2023] [Indexed: 07/20/2023] Open
Abstract
Phytophthora cactorum has two distinct pathotypes that cause crown rot and leather rot in strawberry (Fragaria × ananassa). Strains of the crown rot pathotype can infect both the rhizome (crown) and fruit tissues, while strains of the leather rot pathotype can only infect the fruits of strawberry. The genome of a highly virulent crown rot strain, a low virulent crown rot strain, and three leather rot strains were sequenced using PacBio high fidelity (HiFi) long read sequencing. The reads were de novo assembled to 66.4-67.6 megabases genomes in 178-204 contigs, with N50 values ranging from 892 to 1,036 kilobases. The total number of predicted complete genes in the five P. cactorum genomes ranged from 17,286 to 17,398. Orthology analysis identified a core secretome of 8,238 genes. Comparative genomic analysis revealed differences in the composition of potential virulence effectors, such as putative RxLR and Crinklers, between the crown rot and the leather rot pathotypes. Insertions, deletions, and amino acid substitutions were detected in genes encoding putative elicitors such as beta elicitin and cellulose-binding domain proteins from the leather rot strains compared to the highly virulent crown rot strain, suggesting a potential mechanism for the crown rot strain to escape host recognition during compatible interaction with strawberry. The results presented here highlight several effectors that may facilitate the tissue-specific colonization of P. cactorum in strawberry.
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Affiliation(s)
- Anupam Gogoi
- Department of Plant Sciences, Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), Ås, Norway
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås, Norway
| | - Simeon L. Rossmann
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås, Norway
| | - Erik Lysøe
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås, Norway
| | - Arne Stensvand
- Department of Plant Sciences, Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), Ås, Norway
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås, Norway
| | - May Bente Brurberg
- Department of Plant Sciences, Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), Ås, Norway
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO), Ås, Norway
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Zhu J, Tang X, Sun Y, Li Y, Wang Y, Jiang Y, Shao H, Yong B, Li H, Tao X. Comparative Metabolomic Profiling of Compatible and Incompatible Interactions Between Potato and Phytophthora infestans. Front Microbiol 2022; 13:857160. [PMID: 35464908 PMCID: PMC9024415 DOI: 10.3389/fmicb.2022.857160] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Accepted: 03/07/2022] [Indexed: 11/13/2022] Open
Abstract
Late blight is one of the main biological stresses limiting the potato yield; however, the biochemical mechanisms underlying the infection process of Phytophthora infestans remain unrevealed. In this study, the late blight-resistant potato cultivar Ziyun No.1 (R) and the susceptible cultivar Favorita (S) were inoculated with P. infestans. Untargeted metabolomics was used to study the changes of metabolites in the compatible and incompatible interactions of the two cultivars and the pathogen at 0, 48, and 96 h postinoculation (hpi). A total of 819 metabolites were identified, and the metabolic differences mainly emerged after 48 hpi. There were 198 and 115 differentially expressed metabolites (DEMs) in the compatible and incompatible interactions. These included 147 and 100 upregulated metabolites during the compatible and incompatible interactions, respectively. Among them, 73 metabolites were identified as the P. infestans-responsive DEMs. Furthermore, the comparisons between the two cultivars identified 57 resistance-related metabolites. Resistant potato cultivar had higher levels of salicylic acid and several upstream phenylpropanoid biosynthesis metabolites, triterpenoids, and hydroxycinnamic acids and their derivatives, such as sakuranetin, ferulic acid, ganoderic acid Mi, lucidenic acid D2, and caffeoylmalic acid. These metabolites play crucial roles in cell wall thickening and have antibacterial and antifungal activities. This study reports the time-course metabolomic responses of potatoes to P. infestans. The findings reveal the responses involved in the compatible and incompatible interactions of potatoes and P. infestans.
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Affiliation(s)
- Jingyu Zhu
- College of Life Sciences, Sichuan Normal University, Chengdu, China
| | - Xue Tang
- College of Life Sciences, Sichuan Normal University, Chengdu, China
| | - Yining Sun
- College of Life Sciences, Sichuan Normal University, Chengdu, China
| | - Yan Li
- College of Life Sciences, Sichuan Normal University, Chengdu, China
| | - Yajie Wang
- College of Life Sciences, Sichuan Normal University, Chengdu, China
| | - Yusong Jiang
- Research Institute for Special Plants, Chongqing University of Arts and Sciences, Chongqing, China
| | - Huanhuan Shao
- College of Life Sciences, Sichuan Normal University, Chengdu, China
| | - Bin Yong
- College of Life Sciences, Sichuan Normal University, Chengdu, China
| | - Honghao Li
- Key Laboratory of Integrated Pest Management on Crops in Southwest, Institute of Plant Protection, Ministry of Agriculture, Sichuan Academy of Agricultural Sciences, Chengdu, China
- *Correspondence: Honghao Li,
| | - Xiang Tao
- College of Life Sciences, Sichuan Normal University, Chengdu, China
- Xiang Tao,
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Li H, Hu R, Fan Z, Chen Q, Jiang Y, Huang W, Tao X. Dual RNA Sequencing Reveals the Genome-Wide Expression Profiles During the Compatible and Incompatible Interactions Between Solanum tuberosum and Phytophthora infestans. FRONTIERS IN PLANT SCIENCE 2022; 13:817199. [PMID: 35401650 PMCID: PMC8993506 DOI: 10.3389/fpls.2022.817199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Accepted: 02/07/2022] [Indexed: 06/14/2023]
Abstract
Late blight, caused by Phytophthora infestans (P. infestans), is a devastating plant disease. P. infestans genome encodes hundreds of effectors, complicating the interaction between the pathogen and its host and making it difficult to understand the interaction mechanisms. In this study, the late blight-resistant potato cultivar Ziyun No.1 and the susceptible potato cultivar Favorita were infected with P. infestans isolate SCPZ16-3-1 to investigate the global expression profiles during the compatible and incompatible interactions using dual RNA sequencing (RNA-seq). Most of the expressed Arg-X-Leu-Arg (RXLR) effector genes were suppressed during the first 24 h of infection, but upregulated after 24 h. Moreover, P. infestans induced more specifically expressed genes (SEGs), including RXLR effectors and cell wall-degrading enzymes (CWDEs)-encoding genes, in the compatible interaction. The resistant potato activated a set of biotic stimulus responses and phenylpropanoid biosynthesis SEGs, including kirola-like protein, nucleotide-binding site-leucine-rich repeat (NBS-LRR), disease resistance, and kinase genes. Conversely, the susceptible potato cultivar upregulated more kinase, pathogenesis-related genes than the resistant cultivar. This study is the first study to characterize the compatible and incompatible interactions between P. infestans and different potato cultivars and provides the genome-wide expression profiles for RXLR effector, CWDEs, NBS-LRR protein, and kinase-encoding genes.
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Affiliation(s)
- Honghao Li
- Institute of Plant Protection, Sichuan Academy of Agricultural Sciences, Key Laboratory of Integrated Pest Management on Crops in Southwest, Ministry of Agriculture, Chengdu, China
| | - Rongping Hu
- Institute of Plant Protection, Sichuan Academy of Agricultural Sciences, Key Laboratory of Integrated Pest Management on Crops in Southwest, Ministry of Agriculture, Chengdu, China
| | - Zhonghan Fan
- Institute of Plant Protection, Sichuan Academy of Agricultural Sciences, Key Laboratory of Integrated Pest Management on Crops in Southwest, Ministry of Agriculture, Chengdu, China
| | - Qinghua Chen
- Institute of Plant Protection, Sichuan Academy of Agricultural Sciences, Key Laboratory of Integrated Pest Management on Crops in Southwest, Ministry of Agriculture, Chengdu, China
| | - Yusong Jiang
- Research Institute for Special Plants, Chongqing University of Arts and Sciences, Chongqing, China
| | - Weizao Huang
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Xiang Tao
- College of Life Sciences, Sichuan Normal University, Chengdu, China
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10
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An innovative green synthesis approach of chitosan nanoparticles and their inhibitory activity against phytopathogenic Botrytis cinerea on strawberry leaves. Sci Rep 2022; 12:3515. [PMID: 35241695 PMCID: PMC8894456 DOI: 10.1038/s41598-022-07073-y] [Citation(s) in RCA: 33] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Accepted: 02/10/2022] [Indexed: 12/22/2022] Open
Abstract
Green synthesis is a newly emerging field of nanobiotechnology that offers economic and environmental advantages over traditional chemical and physical protocols. Nontoxic, eco-friendly, and biosafe materials are used to implement sustainable processes. The current work proposes a new biological-based strategy for the biosynthesis of chitosan nanoparticles (CNPs) using Pelargonium graveolens leaves extract. The bioconversion process of CNPs was maximized using the response surface methodology. The best combination of the tested parameters that maximized the biosynthesis process was the incubation of plant extract with 1.08% chitosan at 50.38 °C for 57.53 min., yielding 9.82 ± 3 mg CNPs/mL. Investigation of CNPs by SEM, TEM, EDXS, zeta potential, FTIR, XRD, TGA, and DSC proved the bioconversion process's success. Furthermore, the antifungal activity of the biosynthesized CNPs was screened against a severe isolate of the phytopathogenic Botrytis cinerea. CNPs exerted efficient activity against the fungal growth. On strawberry leaves, 25 mg CNPs/mL reduced the symptoms of gray mold severity down to 3%. The higher concentration of CNPs (50 mg/mL) was found to have a reverse effect on the infected area compared with those of lower concentrations (12.5 and 25 mg CNPs/mL). Therefore, additional work is encouraged to reduce the harmful side effects of elevated CNPs concentrations.
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11
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Huang Z, Li H, Zhou Y, Bao Y, Duan Z, Wang C, Powell CA, Chen B, Zhang M, Yao W. Predication of the Effector Proteins Secreted by Fusarium sacchari Using Genomic Analysis and Heterogenous Expression. J Fungi (Basel) 2022; 8:jof8010059. [PMID: 35049998 PMCID: PMC8780550 DOI: 10.3390/jof8010059] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Revised: 12/27/2021] [Accepted: 01/05/2022] [Indexed: 01/01/2023] Open
Abstract
One of the causative agents of pokkah boeng disease (PBD), which affects sugarcane crops globally, is the fungus Fusarium sacchari. These fungal infections reduce sugar quality and yield, resulting in severe economic losses. Effector proteins play important roles in the interactions between pathogenic fungi and plants. Here, we used bioinformatic prediction approaches to identify 316 candidate secreted effector proteins (CSEPs) in the complete genome of F. sacchari. In total, 95 CSEPs contained known conserved structures, representing 40 superfamilies and 18 domains, while an additional 91 CSEPs contained seven known motifs. Of the 130 CSEPs containing no known domains or motifs, 14 contained one of four novel motifs. A heterogeneous expression system in Nicotiana benthamiana was used to investigate the functions of 163 CSEPs. Seven CSEPs suppressed BAX-triggered programmed cell death in N. benthamiana, while four caused cell death in N. benthamiana. The expression profiles of these eleven CSEPs during F. sacchari infection suggested that they may be involved in sugarcane-F. sacchari interaction. Our results establish a basis for further studies of the role of effector molecules in pathogen–sugarcane interactions, and provide a framework for future predictions of pathogen effector molecules.
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Affiliation(s)
- Zhen Huang
- State Key Lab for Conservation and Utilization of Subtropical Agri-Biological Resources, Guangxi Key Lab of Sugarcane Biology, Guangxi University, Nanning 530005, China; (Z.H.); (H.L.); (Y.Z.); (Y.B.); (Z.D.); (C.W.); (B.C.)
| | - Huixue Li
- State Key Lab for Conservation and Utilization of Subtropical Agri-Biological Resources, Guangxi Key Lab of Sugarcane Biology, Guangxi University, Nanning 530005, China; (Z.H.); (H.L.); (Y.Z.); (Y.B.); (Z.D.); (C.W.); (B.C.)
| | - Yuming Zhou
- State Key Lab for Conservation and Utilization of Subtropical Agri-Biological Resources, Guangxi Key Lab of Sugarcane Biology, Guangxi University, Nanning 530005, China; (Z.H.); (H.L.); (Y.Z.); (Y.B.); (Z.D.); (C.W.); (B.C.)
| | - Yixue Bao
- State Key Lab for Conservation and Utilization of Subtropical Agri-Biological Resources, Guangxi Key Lab of Sugarcane Biology, Guangxi University, Nanning 530005, China; (Z.H.); (H.L.); (Y.Z.); (Y.B.); (Z.D.); (C.W.); (B.C.)
| | - Zhenzhen Duan
- State Key Lab for Conservation and Utilization of Subtropical Agri-Biological Resources, Guangxi Key Lab of Sugarcane Biology, Guangxi University, Nanning 530005, China; (Z.H.); (H.L.); (Y.Z.); (Y.B.); (Z.D.); (C.W.); (B.C.)
| | - Caixia Wang
- State Key Lab for Conservation and Utilization of Subtropical Agri-Biological Resources, Guangxi Key Lab of Sugarcane Biology, Guangxi University, Nanning 530005, China; (Z.H.); (H.L.); (Y.Z.); (Y.B.); (Z.D.); (C.W.); (B.C.)
| | | | - Baoshan Chen
- State Key Lab for Conservation and Utilization of Subtropical Agri-Biological Resources, Guangxi Key Lab of Sugarcane Biology, Guangxi University, Nanning 530005, China; (Z.H.); (H.L.); (Y.Z.); (Y.B.); (Z.D.); (C.W.); (B.C.)
| | - Muqing Zhang
- State Key Lab for Conservation and Utilization of Subtropical Agri-Biological Resources, Guangxi Key Lab of Sugarcane Biology, Guangxi University, Nanning 530005, China; (Z.H.); (H.L.); (Y.Z.); (Y.B.); (Z.D.); (C.W.); (B.C.)
- IRREC-IFAS, University of Florida, Fort Pierce, FL 34945, USA;
- Correspondence: (M.Z.); (W.Y.)
| | - Wei Yao
- State Key Lab for Conservation and Utilization of Subtropical Agri-Biological Resources, Guangxi Key Lab of Sugarcane Biology, Guangxi University, Nanning 530005, China; (Z.H.); (H.L.); (Y.Z.); (Y.B.); (Z.D.); (C.W.); (B.C.)
- IRREC-IFAS, University of Florida, Fort Pierce, FL 34945, USA;
- Correspondence: (M.Z.); (W.Y.)
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12
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Comparative Phenotypic and Agronomic Assessment of Transgenic Potato with 3 R-Gene Stack with Complete Resistance to Late Blight Disease. BIOLOGY 2021; 10:biology10100952. [PMID: 34681051 PMCID: PMC8533226 DOI: 10.3390/biology10100952] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Revised: 09/08/2021] [Accepted: 09/09/2021] [Indexed: 12/23/2022]
Abstract
Transgenic potato event Vic.172, expressing three naturally occurring resistance genes (R genes) conferring complete protection against late blight disease, was evaluated for resistance to late blight, phenotypic characterization, and agronomic performance in field conditions at three locations during three seasons in Uganda. These trials were conducted by comparison to the variety Victoria from which Vic.172 derives, using identical fungicide treatment, except when evaluating disease resistance. During all seasons, the transgenic event Vic.172 was confirmed to have complete resistance to late blight disease, whereas Victoria plants were completely dead by 60-80 days after planting. Tubers from Vic.172 were completely resistant to LB after artificial inoculation. The phenotypic characterization included observations of the characteristics and development of the stems, leaves, flowers, and tubers. Differences in phenotypic parameters between Vic.172 and Victoria were not statistically significant across locations and seasons. The agronomic performance observations covered sprouting, emergence, vigor, foliage growth, and yield. Differences in agronomic performance were not statistically significant except for marketable yield in one location under high productivity conditions. However, yield variation across locations and seasons was not statistically significant, but was influenced by the environment. Hence, the results of the comparative assessment of the phenotype and agronomic performance revealed that transgenic event Vic.172 did not present biologically significant differences in comparison to the variety Victoria it derives from.
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13
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Becking T, Kiselev A, Rossi V, Street-Jones D, Grandjean F, Gaulin E. Pathogenicity of animal and plant parasitic Aphanomyces spp and their economic impact on aquaculture and agriculture. FUNGAL BIOL REV 2021. [DOI: 10.1016/j.fbr.2021.08.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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14
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Structural and Functional Genomics of the Resistance of Cacao to Phytophthora palmivora. Pathogens 2021; 10:pathogens10080961. [PMID: 34451425 PMCID: PMC8398157 DOI: 10.3390/pathogens10080961] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 05/21/2021] [Accepted: 05/23/2021] [Indexed: 11/17/2022] Open
Abstract
Black pod disease, caused by Phytophthora spp., is one of the main diseases that attack cocoa plantations. This study validated, by association mapping, 29 SSR molecular markers flanking to QTL (Quantitative Trait Loci) associated with Phytophthora palmivora Butler (Butler) (PP) resistance, in three local ancient varieties of the Bahia (Comum, Pará, and Maranhão), varieties that have a high potential in the production of gourmet chocolate. Four SSR loci associated with resistance to PP were detected, two on chromosome 8, explaining 7.43% and 3.72% of the Phenotypic Variation (%PV), one on chromosome 2 explaining 2.71%PV and one on chromosome 3 explaining 1.93%PV. A functional domains-based annotation was carried out, in two Theobroma cacao (CRIOLLO and MATINA) reference genomes, of 20 QTL regions associated with cocoa resistance to the pathogen. It was identified 164 (genome CRIOLLO) and 160 (genome MATINA) candidate genes, hypothetically involved in the recognition and activation of responses in the interaction with the pathogen. Genomic regions rich in genes with Coiled-coils (CC), nucleotide binding sites (NBS) and Leucine-rich repeat (LRR) domains were identified on chromosomes 1, 3, 6, 8, and 10, likewise, regions rich in Receptor-like Kinase domain (RLK) and Ginkbilobin2 (GNK2) domains were identified in chromosomes 4 and 6.
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15
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Chen S, Ma T, Song S, Li X, Fu P, Wu W, Liu J, Gao Y, Ye W, Dry IB, Lu J. Arabidopsis downy mildew effector HaRxLL470 suppresses plant immunity by attenuating the DNA-binding activity of bZIP transcription factor HY5. THE NEW PHYTOLOGIST 2021; 230:1562-1577. [PMID: 33586184 DOI: 10.1111/nph.17280] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 02/01/2021] [Indexed: 05/27/2023]
Abstract
The oomycete pathogen Hyaloperonospora arabidopsidis delivers diverse effector proteins into host plant cells to suppress the plant's innate immunity. In this study, we investigate the mechanism of action of a conserved RxLR effector, HaRxLL470, in suppressing plant immunity. Genomic, molecular and biochemical analyses were performed to investigate the function of HaRxLL470 and the mechanism of the interaction between HaRxLL470 and the target host protein during H. arabidopsidis infection. We report that HaRxLL470 enhances plant susceptibility to H. arabidopsidis isolate Noco2 by interacting with the host photomorphogenesis regulator protein HY5. Our results demonstrate that HY5 is not only an important component in the regulation of light signalling, but also positively regulates host plant immunity against H. arabidopsidis by transcriptional activation of defense-related genes. We show that the interaction between HaRxLL470 and HY5 compromises the function of HY5 as a transcription factor by attenuating its DNA-binding activity. The present study demonstrates that HY5 positively regulates host plant defense against H. arabidopsidis whereas HaRxLL470, a conserved RxLR effector across oomycete pathogens, enhances pathogenicity by interacting with HY5 and suppressing transcriptional activation of defense-related genes.
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Affiliation(s)
- Shuyun Chen
- Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Tao Ma
- Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Shiren Song
- Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Xinlong Li
- Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Peining Fu
- Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Wei Wu
- Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Jiaqi Liu
- Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Yu Gao
- Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Wenxiu Ye
- Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Ian B Dry
- CSIRO Agriculture & Food, Urrbrae, SA, 5064, Australia
| | - Jiang Lu
- Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
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16
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Maximiano MR, Miranda VJ, de Barros EG, Dias SC. Validation of an in vitro system to trigger changes in the gene expression of effectors of Sclerotinia sclerotiorum. J Appl Microbiol 2021; 131:885-897. [PMID: 33331046 DOI: 10.1111/jam.14973] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 12/11/2020] [Accepted: 12/12/2020] [Indexed: 11/27/2022]
Abstract
AIMS Sclerotinia sclerotiorum, the causal agent of white mold, can infect several host species, including economically important crops. In this study, we propose and validate a new in vitro system able to mimic the conditions of interaction with the host and promote the induction of S. sclerotiorum effectors. METHODS AND RESULTS For culture media production, we selected three plant species, common bean (Phaseolus vulgaris L, cv. Requinte.), maize (Zea mays, cv. BRS1030) and beggarticks (Bidens pilosa). To validate this system as an in vitro inducer of effectors, the qRT-PCR technique was used to investigate the expression profile of some S. sclerotiorum effector genes in each growth medium at different times after inoculation. CONCLUSION The results obtained in this study provide a validation of a new method to study S. sclerotiorum during mimetic interaction with different hosts. Although leaf extract does not fully represent the plant environment, the presence of plant components in the culture medium seems to induce effector genes, mimicking in planta conditions. The use of MEVM is simpler than in planta growth, bypasses problems such as the amount of mycelium produced, as well as contamination of host cells during transcriptomic and proteomic analyses. SIGNIFICANCE AND IMPACT OF THE STUDY We have devised MEVM media as a model mimicking the interaction of S. sclerotiorum and its hosts and used it to evaluate in vitro expression of effectors normally expressed only in planta.
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Affiliation(s)
- M R Maximiano
- Centro de Análises Proteômicas e Bioquímicas, Programa de Pós-Graduação em Ciências Genômicas e Biotecnologia, Universidade Católica de Brasília, Brasília, Distrito Federal, Brazil
| | - V J Miranda
- Centro de Análises Proteômicas e Bioquímicas, Programa de Pós-Graduação em Ciências Genômicas e Biotecnologia, Universidade Católica de Brasília, Brasília, Distrito Federal, Brazil
| | - E G de Barros
- Centro de Análises Proteômicas e Bioquímicas, Programa de Pós-Graduação em Ciências Genômicas e Biotecnologia, Universidade Católica de Brasília, Brasília, Distrito Federal, Brazil
| | - S C Dias
- Centro de Análises Proteômicas e Bioquímicas, Programa de Pós-Graduação em Ciências Genômicas e Biotecnologia, Universidade Católica de Brasília, Brasília, Distrito Federal, Brazil
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17
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Molecular insights into the mechanisms of susceptibility of Labeo rohita against oomycete Aphanomyces invadans. Sci Rep 2020; 10:19531. [PMID: 33177569 PMCID: PMC7658212 DOI: 10.1038/s41598-020-76278-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Accepted: 10/20/2020] [Indexed: 01/22/2023] Open
Abstract
Aphanomyces invadans, the causative agent of epizootic ulcerative syndrome, is one of the most destructive pathogens of freshwater fishes. To date, the disease has been reported from over 160 fish species in 20 countries and notably, this is the first non-salmonid disease that has resulted in major impacts globally. In particular, Indian major carps (IMCs) are highly susceptible to this disease. To increase our knowledge particularly with regards to host immune response against A. invadans infection in a susceptible host, the gene expression profile in head kidney of A. invadans-infected and control rohu, Labeo rohita was investigated using RNA sequencing. Time course analysis of RNA-Seq data revealed 5608 differentially expressed genes, involved among others in Antigen processing and presentation, Leukocyte transendothelial migration, IL-17 signaling, Chemokine signaling, C-type lectin receptor signaling and Toll-like receptor signaling pathways. In the affected pathways, a number of immune genes were found to be downregulated, suggesting an immune evasion strategy of A. invadans in establishing the infection. The information generated in this study offers first systematic mechanistic understanding of the host–pathogen interaction that might underpin the development of new management strategies for this economically devastating fish-pathogenic oomycete A. invadans.
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18
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Huang X, You Z, Luo Y, Yang C, Ren J, Liu Y, Wei G, Dong P, Ren M. Antifungal activity of chitosan against Phytophthora infestans, the pathogen of potato late blight. Int J Biol Macromol 2020; 166:1365-1376. [PMID: 33161079 DOI: 10.1016/j.ijbiomac.2020.11.016] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2020] [Revised: 10/29/2020] [Accepted: 11/03/2020] [Indexed: 12/13/2022]
Abstract
Phytophthora infestans, the pathogen of potato late blight which is a devastating disease of potatoes, causes stem and leaf rot, leading to significant economic losses. Chitosan is a naturally occurring polysaccharide with a broad spectrum of antimicrobial properties. However, the specific mechanism of chitosan on Phytophthora infestans has not been studied. In this study, we found that chitosan significantly inhibited the mycelial growth and spore germination of Phytophthora infestans in vitro, reduced the resistance of Phytophthora infestans to various adverse conditions, and it had synergistic effect with pesticides, making it a potential way to reduce the use of chemical pesticides. In addition, chitosan could induce resistance in potato pieces and leaves to Phytophthora infestans. Transcriptome analysis data showed that chitosan mainly affected cell growth of Phytophthora infestans, and most of the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways and Gene ontology (GO) terms revolved in metabolic processes, cell membrane structure and function and ribosome biogenesis. Differentially expressed genes (DEGs) related to adverse stress and virulence were also discussed. On the whole, this study provided new ideas for the development of chitosan as an eco-friendly preparation for controlling potato late blight.
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Affiliation(s)
- Xiaoqing Huang
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, 401331 Chongqing, China
| | - Ziyue You
- Chongqing No.1 Secondary School, Chongqing 400044, China
| | - Yang Luo
- Chongqing No.1 Secondary School, Chongqing 400044, China
| | - Chengji Yang
- Chongqing No.1 Secondary School, Chongqing 400044, China
| | - Jie Ren
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, 401331 Chongqing, China
| | - Yanlin Liu
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, 401331 Chongqing, China
| | - Guangjing Wei
- Chongqing No.1 Secondary School, Chongqing 400044, China
| | - Pan Dong
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, 401331 Chongqing, China.
| | - Maozhi Ren
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, 401331 Chongqing, China; Institute of Urban Agriculture, Chinese Academy of Agricultural Sciences, Chengdu 610213, China.
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19
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Lee Y, Cho KS, Seo JH, Sohn KH, Prokchorchik M. Improved Genome Sequence and Gene Annotation Resource for the Potato Late Blight Pathogen Phytophthora infestans. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2020; 33:1025-1028. [PMID: 32310703 DOI: 10.1094/mpmi-02-20-0023-a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Phytophthora infestans is a devastating pathogen causing potato late blight (Solanum tuberosum). Here we report the sequencing, assembly and genome annotation for two Phytophthora infestans isolates sampled in Republic of Korea. Genome sequencing was carried out using long read (Oxford Nanopore) and short read (Illumina Nextseq) sequencing technologies that significantly improved the contiguity and quality of P. infestans genome assembly. Our resources would help researchers better understand the molecular mechanisms by which P. infestans causes late blight disease in the future.
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Affiliation(s)
- Yoonyoung Lee
- Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea
| | - Kwang-Soo Cho
- Potato Research Team, Highland Agriculture Research Institute, Rural Development Administration, Gangwon 25342, Republic of Korea
| | - Jin-Hee Seo
- Potato Research Team, Highland Agriculture Research Institute, Rural Development Administration, Gangwon 25342, Republic of Korea
| | - Kee Hoon Sohn
- Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea
- School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, Pohang 37673, Republic of Korea
| | - Maxim Prokchorchik
- Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea
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Morales JG, Gaviria AE, Gilchrist E. Allelic Variation and Selection in Effector Genes of Phytophthora infestans (Mont.) de Bary. Pathogens 2020; 9:pathogens9070551. [PMID: 32659973 PMCID: PMC7400436 DOI: 10.3390/pathogens9070551] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2020] [Revised: 07/02/2020] [Accepted: 07/06/2020] [Indexed: 12/12/2022] Open
Abstract
Phytophthora infestans is a devastating plant pathogen in several crops such as potato (Solanum tuberosum), tomato (Solanum lycopersicum) and Andean fruits such as tree tomato (Solanum betaceum), lulo (Solanum quitoense), uchuva (Physalis peruviana) and wild species in the genus Solanum sp. Despite intense research performed around the world, P. infestans populations from Colombia, South America, are poorly understood. Of particular importance is knowledge about pathogen effector proteins, which are responsible for virulence. The present work was performed with the objective to analyze gene sequences coding for effector proteins of P. infestans from isolates collected from different hosts and geographical regions. Several genetic parameters, phylogenetic analyses and neutrality tests for non-synonymous and synonymous substitutions were calculated. Non-synonymous substitutions were identified for all genes that exhibited polymorphisms at the DNA level. Significant negative selection values were found for two genes (PITG_08994 and PITG_12737) suggesting active coevolution with the corresponding host resistance proteins. Implications for pathogen virulence mechanisms and disease management are discussed.
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Affiliation(s)
- Juan G. Morales
- Group and Laboratory of Fitotecnia Tropical, Departamento de Ciencias Agronómicas, Facultad de Ciencias Agrarias, Universidad Nacional de Colombia sede Medellín, Medellín, 050034 Antioquia, Colombia; (A.E.G.); (E.G.)
- Correspondence: ; Tel.: +0057-4-4309088
| | - Astrid E. Gaviria
- Group and Laboratory of Fitotecnia Tropical, Departamento de Ciencias Agronómicas, Facultad de Ciencias Agrarias, Universidad Nacional de Colombia sede Medellín, Medellín, 050034 Antioquia, Colombia; (A.E.G.); (E.G.)
| | - Elizabeth Gilchrist
- Group and Laboratory of Fitotecnia Tropical, Departamento de Ciencias Agronómicas, Facultad de Ciencias Agrarias, Universidad Nacional de Colombia sede Medellín, Medellín, 050034 Antioquia, Colombia; (A.E.G.); (E.G.)
- Universidad EAFIT, 050034 Medellín, Colombia
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Chen T, Liu R, Dou M, Li M, Li M, Yin X, Liu GT, Wang Y, Xu Y. Insight Into Function and Subcellular Localization of Plasmopara viticola Putative RxLR Effectors. Front Microbiol 2020; 11:692. [PMID: 32373100 PMCID: PMC7186587 DOI: 10.3389/fmicb.2020.00692] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2019] [Accepted: 03/25/2020] [Indexed: 12/15/2022] Open
Abstract
Grapevine downy mildew, caused by oomycete fungus Plasmopara viticola, is one of the most devastating diseases of grapes across the major production regions of the world. Although many putative effector molecules have been identified from this pathogen, the functions of the majority of these are still unknown. In this study, we analyzed the potential function of 26 P. viticola effectors from the highly virulent strain YL. Using transient expression in leaf cells of the tobacco Nicotiana benthamiana, we found that the majority of the effectors could suppress cell death triggered by BAX and INF1, while seven could induce cell death. The subcellular localization of effectors in N. benthamiana was consistent with their localization in cells of Vitis vinifera. Those effectors that localized to the nucleus (17/26) showed a variety of subnuclear localization. Ten of the effectors localized predominantly to the nucleolus, whereas the remaining seven localized to nucleoplasm. Interestingly, five of the effectors were strongly related in sequence and showed identical subcellular localization, but had different functions in N. benthamiana leaves and expression patterns in grapevine in response to P. viticola. This study highlights the potential functional diversity of P. viticola effectors.
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Affiliation(s)
- Tingting Chen
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, China.,College of Horticulture, Northwest A&F University, Yangling, China.,Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, China
| | - Ruiqi Liu
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, China.,College of Horticulture, Northwest A&F University, Yangling, China.,Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, China
| | - Mengru Dou
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, China.,College of Horticulture, Northwest A&F University, Yangling, China.,Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, China
| | - Mengyuan Li
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, China.,College of Horticulture, Northwest A&F University, Yangling, China.,Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, China
| | - Meijie Li
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, China.,College of Horticulture, Northwest A&F University, Yangling, China.,Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, China
| | - Xiao Yin
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, China.,College of Horticulture, Northwest A&F University, Yangling, China.,Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, China
| | - Guo-Tian Liu
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, China.,College of Horticulture, Northwest A&F University, Yangling, China.,Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, China
| | - Yuejin Wang
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, China.,College of Horticulture, Northwest A&F University, Yangling, China.,Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, China
| | - Yan Xu
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, China.,College of Horticulture, Northwest A&F University, Yangling, China.,Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University, Yangling, China
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22
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Naveed ZA, Wei X, Chen J, Mubeen H, Ali GS. The PTI to ETI Continuum in Phytophthora-Plant Interactions. FRONTIERS IN PLANT SCIENCE 2020; 11:593905. [PMID: 33391306 PMCID: PMC7773600 DOI: 10.3389/fpls.2020.593905] [Citation(s) in RCA: 69] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Accepted: 11/24/2020] [Indexed: 05/15/2023]
Abstract
Phytophthora species are notorious pathogens of several economically important crop plants. Several general elicitors, commonly referred to as Pathogen-Associated Molecular Patterns (PAMPs), from Phytophthora spp. have been identified that are recognized by the plant receptors to trigger induced defense responses in a process termed PAMP-triggered Immunity (PTI). Adapted Phytophthora pathogens have evolved multiple strategies to evade PTI. They can either modify or suppress their elicitors to avoid recognition by host and modulate host defense responses by deploying hundreds of effectors, which suppress host defense and physiological processes by modulating components involved in calcium and MAPK signaling, alternative splicing, RNA interference, vesicle trafficking, cell-to-cell trafficking, proteolysis and phytohormone signaling pathways. In incompatible interactions, resistant host plants perceive effector-induced modulations through resistance proteins and activate downstream components of defense responses in a quicker and more robust manner called effector-triggered-immunity (ETI). When pathogens overcome PTI-usually through effectors in the absence of R proteins-effectors-triggered susceptibility (ETS) ensues. Qualitatively, many of the downstream defense responses overlap between PTI and ETI. In general, these multiple phases of Phytophthora-plant interactions follow the PTI-ETS-ETI paradigm, initially proposed in the zigzag model of plant immunity. However, based on several examples, in Phytophthora-plant interactions, boundaries between these phases are not distinct but are rather blended pointing to a PTI-ETI continuum.
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Affiliation(s)
- Zunaira Afzal Naveed
- Department of Plant Pathology, Institute of Food and Agriculture Sciences, University of Florida, Gainesville, FL, United States
- Mid-Florida Research and Education Center, Institute of Food and Agriculture Sciences, University of Florida, Apopka, FL, United States
| | - Xiangying Wei
- Mid-Florida Research and Education Center, Institute of Food and Agriculture Sciences, University of Florida, Apopka, FL, United States
- Institute of Oceanography, Minjiang University, Fuzhou, China
- Xiangying Wei
| | - Jianjun Chen
- Mid-Florida Research and Education Center, Institute of Food and Agriculture Sciences, University of Florida, Apopka, FL, United States
| | - Hira Mubeen
- Departement of Biotechnology, University of Central Punjab, Lahore, Pakistan
| | - Gul Shad Ali
- Department of Plant Pathology, Institute of Food and Agriculture Sciences, University of Florida, Gainesville, FL, United States
- Mid-Florida Research and Education Center, Institute of Food and Agriculture Sciences, University of Florida, Apopka, FL, United States
- EukaryoTech LLC, Apopka, FL, United States
- *Correspondence: Gul Shad Ali
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23
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Rahman A, Góngora-Castillo E, Bowman MJ, Childs KL, Gent DH, Martin FN, Quesada-Ocampo LM. Genome Sequencing and Transcriptome Analysis of the Hop Downy Mildew Pathogen Pseudoperonospora humuli Reveal Species-Specific Genes for Molecular Detection. PHYTOPATHOLOGY 2019; 109:1354-1366. [PMID: 30939079 DOI: 10.1094/phyto-11-18-0431-r] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Pseudoperonospora humuli is an obligate oomycete pathogen of hop (Humulus lupulus) that causes downy mildew, an important disease in most production regions in the Northern Hemisphere. The pathogen can cause a systemic infection in hop, overwinter in the root system, and infect propagation material. Substantial yield loss may occur owing to P. humuli infection of strobiles (seed cones), shoots, and cone-bearing branches. Fungicide application and cultural practices are the primary methods to manage hop downy mildew. However, effective, sustainable, and cost-effective management of downy mildew can be improved by developing early detection systems to inform on disease risk and timely fungicide application. However, no species-specific diagnostic assays or genomic resources are available for P. humuli. The genome of the P. humuli OR502AA isolate was partially sequenced using Illumina technology and assembled with ABySS. The assembly had a minimum scaffold length of 500 bp and an N50 (median scaffold length of the assembled genome) of 19.2 kbp. A total number of 18,656 genes were identified using MAKER standard gene predictions. Additionally, transcriptome assemblies were generated using RNA-seq and Trinity for seven additional P. humuli isolates. Bioinformatics analyses of next generation sequencing reads of P. humuli and P. cubensis (a closely related sister species) identified 242 candidate species-specific P. humuli genes that could be used as diagnostic molecular markers. These candidate genes were validated using polymerase chain reaction against a diverse collection of isolates from P. humuli, P. cubensis, and other oomycetes. Overall, four diagnostic markers were found to be uniquely present in P. humuli. These candidate markers identified through comparative genomics can be used for pathogen diagnostics in propagation material, such as rhizomes and vegetative cuttings, or adapted for biosurveillance of airborne sporangia, an important source of inoculum in hop downy mildew epidemics.
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Affiliation(s)
- A Rahman
- 1Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695-7613, U.S.A
| | - E Góngora-Castillo
- 1Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695-7613, U.S.A
- 2Department of Biotechnology, Yucatan Center for Scientific Research, 97205 Mérida, Yucatán, México
| | - M J Bowman
- 3Department of Plant Biology, Michigan State University, East Lansing, MI 48823, U.S.A
| | - K L Childs
- 3Department of Plant Biology, Michigan State University, East Lansing, MI 48823, U.S.A
| | - D H Gent
- 4Forage Seed and Cereal Research Unit, U.S. Department of Agriculture-Agricultural Research Service and Oregon State University, Corvallis 97331, OR, U.S.A
| | - F N Martin
- 5Crop Improvement and Protection Research Station, U.S. Department of Agriculture-Agricultural Research Service, Salinas, CA 93905, U.S.A
| | - L M Quesada-Ocampo
- 1Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695-7613, U.S.A
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24
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Zhang M, Xie S, Zhao Y, Meng X, Song L, Feng H, Huang L. Hce2 domain-containing effectors contribute to the full virulence of Valsa mali in a redundant manner. MOLECULAR PLANT PATHOLOGY 2019; 20:843-856. [PMID: 30912612 PMCID: PMC6637899 DOI: 10.1111/mpp.12796] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Valsa mali is the causal agent of apple Valsa canker, a destructive disease in East Asia. Effector proteins play important roles in the virulence of phytopathogenic fungi, and we identified five Hce2 domain-containing effectors (VmHEP1, VmHEP2, VmHEP3, VmHEP4 and VmHEP5) from the V. mali genome. Amongst these, VmHEP1 and VmHEP2 were found to be up-regulated during the early infection stage and VmHEP1 was also identified as a cell death inducer through its transient expression in Nicotiana benthamiana. Although the deletion of each single VmHEP gene did not lead to a reduction in virulence, the double-deletion of VmHEP1 and VmHEP2 notably attenuated V. mali virulence in both apple twigs and leaves. An evolutionary analysis revealed that VmHEP1 and VmHEP2 are two paralogues, under purifying selection. VmHEP1 and VmHEP2 are located next to each other on chromosome 11 as tandem genes with only a 604 bp physical distance. Interestingly, the deletion of VmHEP1 promoted the expression of VmHEP2 and, vice versa, the deletion of VmHEP2 promoted the expression of VmHEP1. The present results provide insights into the functions of Hce2 domain-containing effectors acting as virulence factors of V. mali, and provide a new perspective regarding the contribution of tandem genes to the virulence of phytopathogenic fungi.
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Affiliation(s)
- Mian Zhang
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingChina
| | - Shichang Xie
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingChina
| | - Yuhuan Zhao
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingChina
| | - Xiang Meng
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingChina
| | - Linlin Song
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingChina
| | - Hao Feng
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingChina
| | - Lili Huang
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant ProtectionNorthwest A&F UniversityYanglingChina
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25
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Ghislain M, Byarugaba AA, Magembe E, Njoroge A, Rivera C, Román ML, Tovar JC, Gamboa S, Forbes GA, Kreuze JF, Barekye A, Kiggundu A. Stacking three late blight resistance genes from wild species directly into African highland potato varieties confers complete field resistance to local blight races. PLANT BIOTECHNOLOGY JOURNAL 2019; 17:1119-1129. [PMID: 30467980 PMCID: PMC6523587 DOI: 10.1111/pbi.13042] [Citation(s) in RCA: 75] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2018] [Revised: 11/03/2018] [Accepted: 11/09/2018] [Indexed: 05/09/2023]
Abstract
Considered responsible for one million deaths in Ireland and widespread famine in the European continent during the 1840s, late blight, caused by Phytophthora infestans, remains the most devastating disease of potato (Solanum tuberosum L.) with about 15%-30% annual yield loss in sub-Saharan Africa, affecting mainly smallholder farmers. We show here that the transfer of three resistance (R) genes from wild relatives [RB, Rpi-blb2 from Solanum bulbocastanum and Rpi-vnt1.1 from S. venturii] into potato provided complete resistance in the field over several seasons. We observed that the stacking of the three R genes produced a high frequency of transgenic events with resistance to late blight. In the field, 13 resistant transgenic events with the 3R-gene stack from the potato varieties 'Desiree' and 'Victoria' grew normally without showing pathogen damage and without any fungicide spray, whereas their non-transgenic equivalent varieties were rapidly killed. Characteristics of the local pathogen population suggest that the resistance to late blight may be long-lasting because it has low diversity, and essentially consists of the single lineage, 2_A1, which expresses the cognate avirulence effector genes. Yields of two transgenic events from 'Desiree' and 'Victoria' grown without fungicide to reflect small-scale farm holders were estimated to be 29 and 45 t/ha respectively. This represents a three to four-fold increase over the national average. Thus, these late blight resistant potato varieties, which are the farmers' preferred varieties, could be rapidly adopted and bring significant income to smallholder farmers in sub-Saharan Africa.
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Affiliation(s)
| | | | | | | | | | - María Lupe Román
- International Potato CenterLimaPeru
- Present address:
Universidad Nacional Agraria La MolinaLima12Peru
| | - José Carlos Tovar
- International Potato CenterLimaPeru
- Present address:
Donald Danforth Plant Science Center975 North Warson RoadSt. LouisMissouri63132USA
| | | | | | | | - Alex Barekye
- Kachwekano Zonal Agricultural Research and Development InstituteKabaleUganda
| | - Andrew Kiggundu
- National Agriculture Research Laboratories (NARL)KampalaUganda
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26
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Noman A, Aqeel M, Lou Y. PRRs and NB-LRRs: From Signal Perception to Activation of Plant Innate Immunity. Int J Mol Sci 2019; 20:ijms20081882. [PMID: 30995767 PMCID: PMC6514886 DOI: 10.3390/ijms20081882] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Revised: 04/02/2019] [Accepted: 04/10/2019] [Indexed: 12/11/2022] Open
Abstract
To ward off pathogens and pests, plants use a sophisticated immune system. They use pattern-recognition receptors (PRRs), as well as nucleotide-binding and leucine-rich repeat (NB-LRR) domains, for detecting nonindigenous molecular signatures from pathogens. Plant PRRs induce local and systemic immunity. Plasma-membrane-localized PRRs are the main components of multiprotein complexes having additional transmembrane and cytosolic kinases. Topical research involving proteins and their interactive partners, along with transcriptional and posttranscriptional regulation, has extended our understanding of R-gene-mediated plant immunity. The unique LRR domain conformation helps in the best utilization of a surface area and essentially mediates protein–protein interactions. Genome-wide analyses of inter- and intraspecies PRRs and NB-LRRs offer innovative information about their working and evolution. We reviewed plant immune responses with relevance to PRRs and NB-LRRs. This article focuses on the significant functional diversity, pathogen-recognition mechanisms, and subcellular compartmentalization of plant PRRs and NB-LRRs. We highlight the potential biotechnological application of PRRs and NB-LRRs to enhance broad-spectrum disease resistance in crops.
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Affiliation(s)
- Ali Noman
- Institute of Insect Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310027, China.
- Department of Botany, Government College University, Faisalabad 38000, Pakistan.
| | - Muhammad Aqeel
- State Key Laboratory of Grassland Agro-ecosystems, School of Life Science, Lanzhou University, Lanzhou 730000, China.
| | - Yonggen Lou
- Institute of Insect Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310027, China.
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27
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Naveed ZA, Bibi S, Ali GS. The Phytophthora RXLR Effector Avrblb2 Modulates Plant Immunity by Interfering With Ca 2+ Signaling Pathway. FRONTIERS IN PLANT SCIENCE 2019; 10:374. [PMID: 30984224 PMCID: PMC6447682 DOI: 10.3389/fpls.2019.00374] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Accepted: 03/11/2019] [Indexed: 05/03/2023]
Abstract
In plants, subcellular fluctuations in Ca2+ ion concentration are among the earliest responses to biotic and abiotic stresses. Calmodulin, which is a ubiquitous Ca2+ ion sensor in eukaryotes, plays a major role in translating these Ca2+ signatures to cellular responses by interacting with numerous proteins located in plasma membranes, cytoplasm, organelles and nuclei. In this report, we show that one of the Phytophthora RXLR effector, Avrblb2, interacts with calmodulin at the plasma membrane of the plant cells. Using deletion and single amino acid mutagenesis, we found that calmodulin binds to the effector domain of Avrblb2. In addition, we show that most known homologs of Avrblb2 in three different Phytophthora species interact with different isoforms of calmodulin. Type of amino acids at position 69 in Avrblb2, which determines Rbi-blb2 resistance protein-mediated defense responses, is not involved in the Avrblb2-calmodulin interaction. Using in planta functional analyses, we show that calmodulin binding to Avrblb2 is required for its recognition by Rpi-blb2 to incite hypersensitive response. These findings suggest that Avrblb2 by interacting with calmodulin interfere with plant defense associated Ca2+ signaling in plants.
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28
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Liu L, Xu L, Jia Q, Pan R, Oelmüller R, Zhang W, Wu C. Arms race: diverse effector proteins with conserved motifs. PLANT SIGNALING & BEHAVIOR 2019; 14:1557008. [PMID: 30621489 PMCID: PMC6351098 DOI: 10.1080/15592324.2018.1557008] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Effector proteins play important roles in the infection by pathogenic oomycetes and fungi or the colonization by endophytic and mycorrhizal fungi. They are either translocated into the host plant cells via specific translocation mechanisms and function in the host's cytoplasm or nucleus, or they reside in the apoplast of the plant cells and act at the extracellular host-microbe interface. Many effector proteins possess conserved motifs (such as the RXLR, CRN, LysM, RGD, DELD, EAR, RYWT, Y/F/WXC or CFEM motifs) localized in their N- or C-terminal regions. Analysis of the functions of effector proteins, especially so-called "core effectors", is crucial for the understanding of pathogenicity/symbiosis mechanisms and plant defense strategies, and helps to develop breeding strategies for pathogen-resistant cultivars, and to increase crop yield and quality as well as abiotic stress resistance. This review summarizes current knowledge about these effector proteins with the conversed motifs and their involvement in pathogenic or mutualistic plant/fungal interactions.
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Affiliation(s)
- Liping Liu
- College of Horticulture & Gardening, Yangtze University, Jingzhou, China
| | - Le Xu
- Hubei Collaborative Innovation Center for Grain Industry/Research Center of Crop Stresses Resistance Technologies, Yangtze University, Jingzhou, China
| | - Qie Jia
- College of Horticulture & Gardening, Yangtze University, Jingzhou, China
| | - Rui Pan
- Hubei Collaborative Innovation Center for Grain Industry/Research Center of Crop Stresses Resistance Technologies, Yangtze University, Jingzhou, China
| | - Ralf Oelmüller
- Plant Physiology, Matthias-Schleiden-Institute for Genetics, Bioinformatics and Molecular Botany, Faculty of Biological Science, Friedrich-Schiller-University Jena, Jena, Germany
| | - Wenying Zhang
- Hubei Collaborative Innovation Center for Grain Industry/Research Center of Crop Stresses Resistance Technologies, Yangtze University, Jingzhou, China
- CONTACT Wenying Zhang Hubei Collaborative Innovation Center for Grain Industry/Research Center of Crop Stresses Resistance Technologies, Yangtze University, Jingzhou 434025, China; Chu Wu College of Horticulture & Gardening, Yangtze University, Jingzhou 434025, China
| | - Chu Wu
- College of Horticulture & Gardening, Yangtze University, Jingzhou, China
- Institute of Plant Ecology and Environmental Restoration, Yangtze University, Jingzhou, China
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29
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Yang L, Ouyang H, Fang Z, Zhu W, Wu E, Luo G, Shang L, Zhan J. Evidence for intragenic recombination and selective sweep in an effector gene of Phytophthora infestans. Evol Appl 2018; 11:1342-1353. [PMID: 30151044 PMCID: PMC6099815 DOI: 10.1111/eva.12629] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2017] [Accepted: 03/06/2018] [Indexed: 01/07/2023] Open
Abstract
Effectors, a group of small proteins secreted by pathogens, play a critical role in the antagonistic interaction between plant hosts and pathogens through their dual functions in regulating host immune systems and pathogen infection capability. In this study, evolution in effector genes was investigated through population genetic analysis of Avr3a sequences generated from 96 Phytophthora infestans isolates collected from six locations representing a range of thermal variation and cropping systems in China. We found high genetic variation in the Avr3a gene resulting from diverse mechanisms extending beyond point mutations, frameshift, and defeated start and stop codons to intragenic recombination. A total of 51 nucleotide haplotypes encoding 38 amino acid isoforms were detected in the 96 full sequences with nucleotide diversity in the pathogen populations ranging from 0.007 to 0.023 (mean = 0.017). Although haplotype and nucleotide diversity were high, the effector gene was dominated by only three haplotypes. Evidence for a selective sweep was provided by (i) the population genetic differentiation (GST) of haplotypes being lower than the population differentiation (FST) of SSR marker loci; and (ii) negative values of Tajima's D and Fu's FS. Annual mean temperature in the collection sites was negatively correlated with the frequency of the virulent form (Avr3aEM), indicating Avr3a may be regulated by temperature. These results suggest that elevated air temperature due to global warming may hamper the development of pathogenicity traits in P. infestans and further study under confined thermal regimes may be required to confirm the hypothesis.
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Affiliation(s)
- Lina Yang
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan CropsFujian Agriculture and Forestry UniversityFuzhouChina
- Fujian Key Lab of Plant VirologyInstitute of Plant VirologyFujian Agriculture and Forestry UniversityFuzhouChina
| | - Hai‐Bing Ouyang
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan CropsFujian Agriculture and Forestry UniversityFuzhouChina
- Fujian Key Lab of Plant VirologyInstitute of Plant VirologyFujian Agriculture and Forestry UniversityFuzhouChina
| | - Zhi‐Guo Fang
- Fujian Key Lab of Plant VirologyInstitute of Plant VirologyFujian Agriculture and Forestry UniversityFuzhouChina
- Xiangyang Academy of Agricultural SciencesXiangyangChina
| | - Wen Zhu
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan CropsFujian Agriculture and Forestry UniversityFuzhouChina
- Fujian Key Lab of Plant VirologyInstitute of Plant VirologyFujian Agriculture and Forestry UniversityFuzhouChina
| | - E‐Jiao Wu
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan CropsFujian Agriculture and Forestry UniversityFuzhouChina
- Fujian Key Lab of Plant VirologyInstitute of Plant VirologyFujian Agriculture and Forestry UniversityFuzhouChina
| | - Gui‐Huo Luo
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan CropsFujian Agriculture and Forestry UniversityFuzhouChina
- Fujian Key Lab of Plant VirologyInstitute of Plant VirologyFujian Agriculture and Forestry UniversityFuzhouChina
| | - Li‐Ping Shang
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan CropsFujian Agriculture and Forestry UniversityFuzhouChina
| | - Jiasui Zhan
- Key Lab for Biopesticide and Chemical BiologyMinistry of EducationFujian Agriculture and Forestry UniversityFuzhouChina
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30
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Leisner SM, Schoelz JE. Joining the Crowd: Integrating Plant Virus Proteins into the Larger World of Pathogen Effectors. ANNUAL REVIEW OF PHYTOPATHOLOGY 2018; 56:89-110. [PMID: 29852091 DOI: 10.1146/annurev-phyto-080417-050151] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The first bacterial and viral avirulence ( avr) genes were cloned in 1984. Although virus and bacterial avr genes were physically isolated in the same year, the questions associated with their characterization after discovery were very different, and these differences had a profound influence on the narrative of host-pathogen interactions for the past 30 years. Bacterial avr proteins were subsequently shown to suppress host defenses, leading to their reclassification as effectors, whereas research on viral avr proteins centered on their role in the viral infection cycle rather than their effect on host defenses. Recent studies that focus on the multifunctional nature of plant virus proteins have shown that some virus proteins are capable of suppression of the same host defenses as bacterial effectors. This is exemplified by the P6 protein of Cauliflower mosaic virus (CaMV), a multifunctional plant virus protein that facilitates several steps in the infection, including modulation of host defenses. This review highlights the modular structure and multifunctional nature of CaMV P6 and illustrates its similarities to other, well-established pathogen effectors.
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Affiliation(s)
- Scott M Leisner
- Department of Biological Sciences, University of Toledo, Toledo, Ohio 43606, USA
| | - James E Schoelz
- Division of Plant Sciences, University of Missouri, Columbia, Missouri 65211, USA;
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31
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Gómez-Zeledón J, Spring O. Up-regulated RxLR effector genes of Plasmopara viticola in synchronized host-free stages and infected leaves of hosts with different susceptibility. Fungal Biol 2018; 122:1125-1133. [PMID: 30449350 DOI: 10.1016/j.funbio.2018.07.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2018] [Revised: 07/10/2018] [Accepted: 07/13/2018] [Indexed: 11/17/2022]
Abstract
Fast recognition of host signals and early activation of infection mechanisms in Plasmopara viticola are decisive for successful infestation of Vitis vinifera. To better understand interactive processes at the first front line of combat between the pathogen and its host, a specific pre-infective stage was generated in a host-free system. Zoospore encystment was triggered within minutes after treatment with CaCl2. Subsequently, high rates of germ tube formation occurred in a synchronized manner. This method was employed to compare development-related gene expression in strains of different virulence. Soon after germination, spores showed strong up-regulation of two effector genes, PvRxLR18 and PvRxLR28, particularly in the high virulence strain. On infected grapevine leaf-discs of cultivars with different susceptibility, a similar up-regulation was found at 6 hours post inoculation (hpi). This effect was much more evident in the high virulence than in the low virulence strain and was significantly higher on leaves of the tolerant cultivar Regent than on Müller-Thurgau. In addition, PvRxLR67 was up-regulated 24 hpi in the high virulence strain indicating that different effectors are active in later infection stages. Differences in the expression pattern of RxLR effector genes between the two strains corroborated with infection symptoms visible by sporulation.
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Affiliation(s)
| | - Otmar Spring
- Institute of Botany, University of Hohenheim, 70593, Stuttgart, BW, Germany.
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Trusch F, Loebach L, Wawra S, Durward E, Wuensch A, Iberahim NA, de Bruijn I, MacKenzie K, Willems A, Toloczko A, Diéguez-Uribeondo J, Rasmussen T, Schrader T, Bayer P, Secombes CJ, van West P. Cell entry of a host-targeting protein of oomycetes requires gp96. Nat Commun 2018; 9:2347. [PMID: 29904064 PMCID: PMC6002402 DOI: 10.1038/s41467-018-04796-3] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2017] [Accepted: 05/11/2018] [Indexed: 12/02/2022] Open
Abstract
The animal-pathogenic oomycete Saprolegnia parasitica causes serious losses in aquaculture by infecting and killing freshwater fish. Like plant-pathogenic oomycetes, S. parasitica employs similar infection structures and secretes effector proteins that translocate into host cells to manipulate the host. Here, we show that the host-targeting protein SpHtp3 enters fish cells in a pathogen-independent manner. This uptake process is guided by a gp96-like receptor and can be inhibited by supramolecular tweezers. The C-terminus of SpHtp3 (containing the amino acid sequence YKARK), and not the N-terminal RxLR motif, is responsible for the uptake into host cells. Following translocation, SpHtp3 is released from vesicles into the cytoplasm by another host-targeting protein where it degrades nucleic acids. The effector translocation mechanism described here, is potentially also relevant for other pathogen-host interactions as gp96 is found in both animals and plants.
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Grants
- BB/E007120/1 Biotechnology and Biological Sciences Research Council
- BB/G012075/1 Biotechnology and Biological Sciences Research Council
- Biotechnology and Biological Sciences Research Council (BBSRC)
- Deutsche Forschungsgemeinschaft (German Research Foundation)
- Our work is supported by the [European Community's] Seventh Framework Programme [FP7/2007-2013] under grant agreement no [238550] (LL, JDU, CJS, PvW); BBSRC [BBE007120/1, BB/J018333/1 and BB/G012075/1] (FT, IdB, CJS, SW, PvW); Newton Global partnership Award [BB/N005058/1] (FT, PvW), the University of Aberdeen (ADT, TR, CJS, PvW) and Deutsche Forschungsgemeinschaft [CRC1093] (PB, TS). We would like to acknowledge the Ministry of Higher Education Malaysia for funding INA. We would like to thank Brian Haas for his bioinformatics support. We would like to acknowledge Neil Gow and Johannes van den Boom for critical reading of the manuscript. We would like to acknowledge Svetlana Rezinciuc for technical help with pH-studies.
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Affiliation(s)
- Franziska Trusch
- Aberdeen Oomycete Laboratory, Institute of Medical Sciences, University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
- International Centre for Aquaculture Research and Development (ICARD), University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
| | - Lars Loebach
- Aberdeen Oomycete Laboratory, Institute of Medical Sciences, University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
| | - Stephan Wawra
- Aberdeen Oomycete Laboratory, Institute of Medical Sciences, University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
- Botanical Institute, Genetical Institute, University of Cologne, Cologne, 50674, Germany
| | - Elaine Durward
- Aberdeen Oomycete Laboratory, Institute of Medical Sciences, University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
- International Centre for Aquaculture Research and Development (ICARD), University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
| | - Andreas Wuensch
- Aberdeen Oomycete Laboratory, Institute of Medical Sciences, University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
- International Centre for Aquaculture Research and Development (ICARD), University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
| | - Nurul Aqilah Iberahim
- Aberdeen Oomycete Laboratory, Institute of Medical Sciences, University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
- International Centre for Aquaculture Research and Development (ICARD), University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
- School of Fisheries and Aquaculture Sciences, Universiti Malaysia Terengganu, 21030, Kuala Terengganu, Terengganu, Malaysia
| | - Irene de Bruijn
- Aberdeen Oomycete Laboratory, Institute of Medical Sciences, University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
- Netherlands Institute for Ecology (NIOO), Wageningen, 6708 PB, Netherlands
| | - Kevin MacKenzie
- Microscopy and Histology Facility, Institute of Medical Sciences, University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
| | - Ariane Willems
- Aberdeen Oomycete Laboratory, Institute of Medical Sciences, University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
| | - Aleksandra Toloczko
- Aberdeen Oomycete Laboratory, Institute of Medical Sciences, University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
| | | | - Tim Rasmussen
- Institute of Medical Sciences, University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
| | - Thomas Schrader
- Organic Chemistry, University of Duisburg-Essen, Essen, 45117, Germany
| | - Peter Bayer
- Structural and Medicinal Biochemistry, Centre for Medical Biotechnology (ZMB), University of Duisburg-Essen, Essen, 45117, Germany
| | - Chris J Secombes
- International Centre for Aquaculture Research and Development (ICARD), University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK
- Scottish Fish Immunology Research Centre, Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, AB24 2TZ, Scotland, UK
| | - Pieter van West
- Aberdeen Oomycete Laboratory, Institute of Medical Sciences, University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK.
- International Centre for Aquaculture Research and Development (ICARD), University of Aberdeen, Aberdeen, AB25 2ZD, Scotland, UK.
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Praz CR, Menardo F, Robinson MD, Müller MC, Wicker T, Bourras S, Keller B. Non-parent of Origin Expression of Numerous Effector Genes Indicates a Role of Gene Regulation in Host Adaption of the Hybrid Triticale Powdery Mildew Pathogen. FRONTIERS IN PLANT SCIENCE 2018; 9:49. [PMID: 29441081 PMCID: PMC5797619 DOI: 10.3389/fpls.2018.00049] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2017] [Accepted: 01/10/2018] [Indexed: 05/20/2023]
Abstract
Powdery mildew is an important disease of cereals. It is caused by one species, Blumeria graminis, which is divided into formae speciales each of which is highly specialized to one host. Recently, a new form capable of growing on triticale (B.g. triticale) has emerged through hybridization between wheat and rye mildews (B.g. tritici and B.g. secalis, respectively). In this work, we used RNA sequencing to study the molecular basis of host adaptation in B.g. triticale. We analyzed gene expression in three B.g. tritici isolates, two B.g. secalis isolates and two B.g. triticale isolates and identified a core set of putative effector genes that are highly expressed in all formae speciales. We also found that the genes differentially expressed between isolates of the same form as well as between different formae speciales were enriched in putative effectors. Their coding genes belong to several families including some which contain known members of mildew avirulence (Avr) and suppressor (Svr) genes. Based on these findings we propose that effectors play an important role in host adaptation that is mechanistically based on Avr-Resistance gene-Svr interactions. We also found that gene expression in the B.g. triticale hybrid is mostly conserved with the parent-of-origin, but some genes inherited from B.g. tritici showed a B.g. secalis-like expression. Finally, we identified 11 unambiguous cases of putative effector genes with hybrid-specific, non-parent of origin gene expression, and we propose that they are possible determinants of host specialization in triticale mildew. These data suggest that altered expression of multiple effector genes, in particular Avr and Svr related factors, might play a role in mildew host adaptation based on hybridization.
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Affiliation(s)
- Coraline R. Praz
- Department of Plant and Microbial Biology, University of Zürich, Zürich, Switzerland
| | - Fabrizio Menardo
- Department of Plant and Microbial Biology, University of Zürich, Zürich, Switzerland
| | - Mark D. Robinson
- Department of Molecular Life Sciences and SIB Swiss Institute of Bioinformatics, University of Zürich, Zürich, Switzerland
| | - Marion C. Müller
- Department of Plant and Microbial Biology, University of Zürich, Zürich, Switzerland
| | - Thomas Wicker
- Department of Plant and Microbial Biology, University of Zürich, Zürich, Switzerland
| | - Salim Bourras
- Department of Plant and Microbial Biology, University of Zürich, Zürich, Switzerland
- *Correspondence: Salim Bourras
| | - Beat Keller
- Department of Plant and Microbial Biology, University of Zürich, Zürich, Switzerland
- Beat Keller
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Yin J, Gu B, Huang G, Tian Y, Quan J, Lindqvist-Kreuze H, Shan W. Conserved RXLR Effector Genes of Phytophthora infestans Expressed at the Early Stage of Potato Infection Are Suppressive to Host Defense. FRONTIERS IN PLANT SCIENCE 2017; 8:2155. [PMID: 29312401 PMCID: PMC5742156 DOI: 10.3389/fpls.2017.02155] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2017] [Accepted: 12/06/2017] [Indexed: 05/20/2023]
Abstract
Late blight has been the most devastating potato disease worldwide. The causal agent, Phytophthora infestans, is notorious for its capability to rapidly overcome host resistance. Changes in the expression pattern and the encoded protein sequences of effector genes in the pathogen are responsible for the loss of host resistance. Among numerous effector genes, the class of RXLR effector genes is well-known in mediating host genotype-specific resistance. We therefore performed deep sequencing of five genetically diverse P. infestans strains using in planta materials infected with zoospores (12 h post inoculation) and focused on the identification of RXLR effector genes that are conserved in coding sequences, are highly expressed in early stages of plant infection, and have defense suppression activities. In all, 245 RXLR effector genes were expressed in five transcriptomes, with 108 being co-expressed in all five strains, 47 of them comparatively highly expressed. Taking sequence polymorphism into consideration, 18 candidate core RXLR effectors that were conserved in sequence and with higher in planta expression levels were selected for further study. Agrobacterium tumefaciens-mediated transient expression of the selected effector genes in Nicotiana benthamiana and potato demonstrated their potential virulence function, as shown by suppression of PAMP-triggered immunity (PTI) or/and effector-triggered immunity (ETI). The identified collection of core RXLR effectors will be useful in the search for potential durable late blight resistance genes. Analysis of 10 known Avr RXLR genes revealed that the resistance genes R2, Rpi-blb2, Rpi-vnt1, Rpi-Smira1, and Rpi-Smira2 may be effective in potato cultivars. Analysis of 8 SFI (Suppressor of early Flg22-induced Immune response) RXLR effector genes showed that SFI2, SFI3, and SFI4 were highly expressed in all examined strains, suggesting their potentially important function in early stages of pathogen infection.
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Affiliation(s)
- Junliang Yin
- College of Plant Protection, Northwest A&F University, Xianyang, China
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Xianyang, China
| | - Biao Gu
- College of Plant Protection, Northwest A&F University, Xianyang, China
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Xianyang, China
| | - Guiyan Huang
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Xianyang, China
- College of Life Sciences, Northwest A&F University, Xianyang, China
| | - Yuee Tian
- College of Plant Protection, Northwest A&F University, Xianyang, China
| | - Junli Quan
- College of Plant Protection, Northwest A&F University, Xianyang, China
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Xianyang, China
| | | | - Weixing Shan
- College of Plant Protection, Northwest A&F University, Xianyang, China
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Xianyang, China
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Lyu X, Shen C, Fu Y, Xie J, Jiang D, Li G, Cheng J. A Small Secreted Virulence-Related Protein Is Essential for the Necrotrophic Interactions of Sclerotinia sclerotiorum with Its Host Plants. PLoS Pathog 2016; 12:e1005435. [PMID: 26828434 PMCID: PMC4735494 DOI: 10.1371/journal.ppat.1005435] [Citation(s) in RCA: 122] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2015] [Accepted: 01/11/2016] [Indexed: 12/28/2022] Open
Abstract
Small, secreted proteins have been found to play crucial roles in interactions between biotrophic/hemi-biotrophic pathogens and plants. However, little is known about the roles of these proteins produced by broad host-range necrotrophic phytopathogens during infection. Here, we report that a cysteine-rich, small protein SsSSVP1 in the necrotrophic phytopathogen Sclerotinia sclerotiorum was experimentally confirmed to be a secreted protein, and the secretion of SsSSVP1 from hyphae was followed by internalization and cell-to-cell movement independent of a pathogen in host cells. SsSSVP1∆SP could induce significant plant cell death and targeted silencing of SsSSVP1 resulted in a significant reduction in virulence. Through yeast two-hybrid (Y2H), coimmunoprecipitation (co-IP) and bimolecular fluorescence complementation (BiFC) assays, we demonstrated that SsSSVP1∆SP interacted with QCR8, a subunit of the cytochrome b-c1 complex of mitochondrial respiratory chain in plants. Double site-directed mutagenesis of two cysteine residues (C38 and C44) in SsSSVP1∆SP had significant effects on its homo-dimer formation, SsSSVP1∆SP-QCR8 interaction and plant cell death induction, indicating that partial cysteine residues surely play crucial roles in maintaining the structure and function of SsSSVP1. Co-localization and BiFC assays showed that SsSSVP1∆SP might hijack QCR8 to cytoplasm before QCR8 targeting into mitochondria, thereby disturbing its subcellular localization in plant cells. Furthermore, virus induced gene silencing (VIGS) of QCR8 in tobacco caused plant abnormal development and cell death, indicating the cell death induced by SsSSVP1∆SP might be caused by the SsSSVP1∆SP-QCR8 interaction, which had disturbed the QCR8 subcellular localization and hence disabled its biological functions. These results suggest that SsSSVP1 is a potential effector which may manipulate plant energy metabolism to facilitate the infection of S. sclerotiorum. Our findings indicate novel roles of small secreted proteins in the interactions between host-non-specific necrotrophic fungi and plants, and highlight the significance to illuminate the pathogenic mechanisms of this type of interaction.
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Affiliation(s)
- Xueliang Lyu
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei Province, China
- The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei Province, China
| | - Cuicui Shen
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei Province, China
- The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei Province, China
| | - Yanping Fu
- The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei Province, China
| | - Jiatao Xie
- The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei Province, China
| | - Daohong Jiang
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei Province, China
- The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei Province, China
| | - Guoqing Li
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei Province, China
- The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei Province, China
| | - Jiasen Cheng
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei Province, China
- The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei Province, China
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Menardo F, Praz CR, Wyder S, Ben-David R, Bourras S, Matsumae H, McNally KE, Parlange F, Riba A, Roffler S, Schaefer LK, Shimizu KK, Valenti L, Zbinden H, Wicker T, Keller B. Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species. Nat Genet 2016; 48:201-5. [PMID: 26752267 DOI: 10.1038/ng.3485] [Citation(s) in RCA: 106] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2015] [Accepted: 12/11/2015] [Indexed: 11/09/2022]
Abstract
Throughout the history of agriculture, many new crop species (polyploids or artificial hybrids) have been introduced to diversify products or to increase yield. However, little is known about how these new crops influence the evolution of new pathogens and diseases. Triticale is an artificial hybrid of wheat and rye, and it was resistant to the fungal pathogen powdery mildew (Blumeria graminis) until 2001 (refs. 1,2,3). We sequenced and compared the genomes of 46 powdery mildew isolates covering several formae speciales. We found that B. graminis f. sp. triticale, which grows on triticale and wheat, is a hybrid between wheat powdery mildew (B. graminis f. sp. tritici) and mildew specialized on rye (B. graminis f. sp. secalis). Our data show that the hybrid of the two mildews specialized on two different hosts can infect the hybrid plant species originating from those two hosts. We conclude that hybridization between mildews specialized on different species is a mechanism of adaptation to new crops introduced by agriculture.
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Affiliation(s)
- Fabrizio Menardo
- Department of Plant and Microbial Biology, University of Zürich, Zurich, Switzerland
| | - Coraline R Praz
- Department of Plant and Microbial Biology, University of Zürich, Zurich, Switzerland
| | - Stefan Wyder
- Department of Plant and Microbial Biology, University of Zürich, Zurich, Switzerland
| | - Roi Ben-David
- Department of Plant and Microbial Biology, University of Zürich, Zurich, Switzerland
| | - Salim Bourras
- Department of Plant and Microbial Biology, University of Zürich, Zurich, Switzerland
| | - Hiromi Matsumae
- Institute of Evolutionary Biology and Environmental Studies, University of Zürich, Zurich, Switzerland
| | - Kaitlin E McNally
- Department of Plant and Microbial Biology, University of Zürich, Zurich, Switzerland
| | - Francis Parlange
- Department of Plant and Microbial Biology, University of Zürich, Zurich, Switzerland
| | - Andrea Riba
- Biozentrum, University of Basel, Basel, Switzerland
| | - Stefan Roffler
- Department of Plant and Microbial Biology, University of Zürich, Zurich, Switzerland
| | - Luisa K Schaefer
- Department of Plant and Microbial Biology, University of Zürich, Zurich, Switzerland
| | - Kentaro K Shimizu
- Institute of Evolutionary Biology and Environmental Studies, University of Zürich, Zurich, Switzerland
| | - Luca Valenti
- Department of Plant and Microbial Biology, University of Zürich, Zurich, Switzerland
| | - Helen Zbinden
- Department of Plant and Microbial Biology, University of Zürich, Zurich, Switzerland
| | - Thomas Wicker
- Department of Plant and Microbial Biology, University of Zürich, Zurich, Switzerland
| | - Beat Keller
- Department of Plant and Microbial Biology, University of Zürich, Zurich, Switzerland
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Kim KT, Jeon J, Choi J, Cheong K, Song H, Choi G, Kang S, Lee YH. Kingdom-Wide Analysis of Fungal Small Secreted Proteins (SSPs) Reveals their Potential Role in Host Association. FRONTIERS IN PLANT SCIENCE 2016; 7:186. [PMID: 26925088 PMCID: PMC4759460 DOI: 10.3389/fpls.2016.00186] [Citation(s) in RCA: 116] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2015] [Accepted: 02/03/2016] [Indexed: 05/18/2023]
Abstract
Fungal secretome consists of various functional groups of proteins, many of which participate in nutrient acquisition, self-protection, or manipulation of the environment and neighboring organisms. The least characterized component of the secretome is small secreted proteins (SSPs). Some SSPs have been reported to function as effectors, but most remain to be characterized. The composition of major secretome components, such as carbohydrate-active enzymes, proteases, lipases, and oxidoreductases, appear to reflect the lifestyle and ecological niche of individual species. We hypothesize that many SSPs participate in manipulating plants as effectors. Obligate biotrophs likely encode more and diverse effector-like SSPs to suppress host defense compared to necrotrophs, which generally use cell wall degrading enzymes and phytotoxins to kill hosts. Because different secretome prediction workflows have been used in different studies, available secretome data are difficult to integrate for comprehensive comparative studies to test this hypothesis. In this study, SSPs encoded by 136 fungal species were identified from data archived in Fungal Secretome Database (FSD) via a refined secretome workflow. Subsequently, compositions of SSPs and other secretome components were compared in light of taxa and lifestyles. Those species that are intimately associated with host cells, such as biotrophs and symbionts, usually have higher proportion of species-specific SSPs (SSSPs) than hemibiotrophs and necrotrophs, but the latter groups displayed higher proportions of secreted enzymes. Results from our study established a foundation for functional studies on SSPs and will also help understand genomic changes potentially underpinning different fungal lifestyles.
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Affiliation(s)
- Ki-Tae Kim
- Fungal Bioinformatics Laboratory, Seoul National UniversitySeoul, South Korea
- Department of Agricultural Biotechnology, Seoul National UniversitySeoul, South Korea
| | - Jongbum Jeon
- Fungal Bioinformatics Laboratory, Seoul National UniversitySeoul, South Korea
- Interdisciplinary Program in Agricultural Genomics, Seoul National UniversitySeoul, South Korea
| | - Jaeyoung Choi
- Fungal Bioinformatics Laboratory, Seoul National UniversitySeoul, South Korea
- Interdisciplinary Program in Agricultural Genomics, Seoul National UniversitySeoul, South Korea
| | - Kyeongchae Cheong
- Fungal Bioinformatics Laboratory, Seoul National UniversitySeoul, South Korea
- Interdisciplinary Program in Agricultural Genomics, Seoul National UniversitySeoul, South Korea
| | - Hyeunjeong Song
- Fungal Bioinformatics Laboratory, Seoul National UniversitySeoul, South Korea
- Interdisciplinary Program in Agricultural Genomics, Seoul National UniversitySeoul, South Korea
| | - Gobong Choi
- Fungal Bioinformatics Laboratory, Seoul National UniversitySeoul, South Korea
- Interdisciplinary Program in Agricultural Genomics, Seoul National UniversitySeoul, South Korea
| | - Seogchan Kang
- Department of Plant Pathology and Environmental Microbiology, The Pennsylvania State UniversityUniversity Park, PA, USA
| | - Yong-Hwan Lee
- Fungal Bioinformatics Laboratory, Seoul National UniversitySeoul, South Korea
- Department of Agricultural Biotechnology, Seoul National UniversitySeoul, South Korea
- Interdisciplinary Program in Agricultural Genomics, Seoul National UniversitySeoul, South Korea
- Center for Fungal Genetic Resources, Center for Fungal Pathogenesis, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, Seoul National UniversitySeoul, South Korea
- *Correspondence: Yong-Hwan Lee
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Van Weymers PSM, Baker K, Chen X, Harrower B, Cooke DEL, Gilroy EM, Birch PRJ, Thilliez GJA, Lees AK, Lynott JS, Armstrong MR, McKenzie G, Bryan GJ, Hein I. Utilizing "Omic" Technologies to Identify and Prioritize Novel Sources of Resistance to the Oomycete Pathogen Phytophthora infestans in Potato Germplasm Collections. FRONTIERS IN PLANT SCIENCE 2016; 7:672. [PMID: 27303410 PMCID: PMC4882398 DOI: 10.3389/fpls.2016.00672] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2016] [Accepted: 05/02/2016] [Indexed: 05/02/2023]
Abstract
The greatest threat to potato production world-wide is late blight, caused by the oomycete pathogen Phytophthora infestans. A screen of 126 wild diploid Solanum accessions from the Commonwealth Potato Collection (CPC) with P. infestans isolates belonging to the genotype 13-A2 identified resistances in the species S. bulbocastanum, S. capsicibaccatum, S. microdontum, S. mochiquense, S. okadae, S. pinnatisectum, S. polyadenium, S. tarijense, and S. verrucosum. Effector-omics, allele mining, and diagnostic RenSeq (dRenSeq) were utilized to investigate the nature of resistances in S. okadae accessions. dRenSeq in resistant S. okadae accessions 7129, 7625, 3762, and a bulk of 20 resistant progeny confirmed the presence of full-length Rpi-vnt1.1 under stringent mapping conditions and corroborated allele mining results in the accessions 7129 and 7625 as well as Avr-vnt1 recognition in transient expression assays. In contrast, susceptible S. okadae accession 3761 and a bulk of 20 susceptible progeny lacked sequence homology in the 5' end compared to the functional Rpi-vnt1.1 gene. Further evaluation of S. okadae accessions with P. infestans isolates that have a broad spectrum of virulence demonstrated that, although S. okadae accessions 7129, 7625, and 7629 contain functional Rpi-vnt1.1, they also carry a novel resistance gene. We provide evidence that existing germplasm collections are important sources of novel resistances and that "omic" technologies such as dRenSeq-based genomics and effector-omics are efficacious tools to rapidly explore the diversity within these collections.
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Affiliation(s)
| | - Katie Baker
- Information and Computational Sciences, The James Hutton InstituteDundee, UK
| | - Xinwei Chen
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
| | - Brian Harrower
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
| | | | | | - Paul R. J. Birch
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
| | | | - Alison K. Lees
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
| | - James S. Lynott
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
| | | | - Gaynor McKenzie
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
| | - Glenn J. Bryan
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
- *Correspondence: Glenn J. Bryan
| | - Ingo Hein
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
- Ingo Hein
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Fry WE, Birch PRJ, Judelson HS, Grünwald NJ, Danies G, Everts KL, Gevens AJ, Gugino BK, Johnson DA, Johnson SB, McGrath MT, Myers KL, Ristaino JB, Roberts PD, Secor G, Smart CD. Five Reasons to Consider Phytophthora infestans a Reemerging Pathogen. PHYTOPATHOLOGY 2015; 105:966-81. [PMID: 25760519 DOI: 10.1094/phyto-01-15-0005-fi] [Citation(s) in RCA: 152] [Impact Index Per Article: 16.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Phytophthora infestans has been a named pathogen for well over 150 years and yet it continues to "emerge", with thousands of articles published each year on it and the late blight disease that it causes. This review explores five attributes of this oomycete pathogen that maintain this constant attention. First, the historical tragedy associated with this disease (Irish potato famine) causes many people to be fascinated with the pathogen. Current technology now enables investigators to answer some questions of historical significance. Second, the devastation caused by the pathogen continues to appear in surprising new locations or with surprising new intensity. Third, populations of P. infestans worldwide are in flux, with changes that have major implications to disease management. Fourth, the genomics revolution has enabled investigators to make tremendous progress in terms of understanding the molecular biology (especially the pathogenicity) of P. infestans. Fifth, there remain many compelling unanswered questions.
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Affiliation(s)
- W E Fry
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - P R J Birch
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - H S Judelson
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - N J Grünwald
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - G Danies
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - K L Everts
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - A J Gevens
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - B K Gugino
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - D A Johnson
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - S B Johnson
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - M T McGrath
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - K L Myers
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - J B Ristaino
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - P D Roberts
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - G Secor
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - C D Smart
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
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Fu L, Zhu C, Ding X, Yang X, Morris PF, Tyler BM, Zhang X. Characterization of Cell-Death-Inducing Members of the Pectate Lyase Gene Family in Phytophthora capsici and Their Contributions to Infection of Pepper. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2015; 28:766-75. [PMID: 25775270 DOI: 10.1094/mpmi-11-14-0352-r] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Pectate lyases (PL) play a critical role in pectin degradation. PL have been extensively studied in major bacterial and fungal pathogens of a wide range of plant species. However, the contribution of PL to infection by oomycete pathogens remains largely unknown. Here, we cloned 22 full-length pectate lyase (PcPL) genes from a highly aggressive strain of Phytophthora capsici SD33. Of these, PVX agroinfiltration revealed that 12 PcPL genes were found to be highly induced during infection of pepper by SD33 but the induction level was twofold less in a mildly aggressive strain, YN07. The four genes with the highest transcript levels as measured by by quantitative reverse-transcription polymerase chain reaction (PcPL1, PcPL15, PcPL16, and PcPL20) also produced a severe cell death response following transient expression in pepper leaves but the other eight PcPL genes did not. Overexpression of these four genes increased the virulence of SD33 on pepper slightly, and increased it more substantially during infection of tobacco. Overexpression of the genes in YN07 restored its aggressiveness to near that of SD33. Gene silencing experiments with the 12 PcPL genes produced diverse patterns of silencing of PcPL genes, from which it could be inferred from regression analysis that PcPL1, PcPL16, and PcPL20 could account for nearly all of the contributions of the PcPL genes to virulence.
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Affiliation(s)
- Li Fu
- 1 Department of Plant Pathology, Shandong Agricultural University, No. 61, Daizong Street, Taian, Shandong, 271018, China
| | - Chunyuan Zhu
- 1 Department of Plant Pathology, Shandong Agricultural University, No. 61, Daizong Street, Taian, Shandong, 271018, China
| | - Xiaomeng Ding
- 1 Department of Plant Pathology, Shandong Agricultural University, No. 61, Daizong Street, Taian, Shandong, 271018, China
| | - Xiaoyan Yang
- 1 Department of Plant Pathology, Shandong Agricultural University, No. 61, Daizong Street, Taian, Shandong, 271018, China
| | - Paul F Morris
- 2 Department of Biological Sciences, Bowling Green State University, Bowling Green, OH 43403 U.S.A
| | - Brett M Tyler
- 3 Center for Genome Research and Biocomputing, and Department of Botany and Plant Pathology, Oregon State University, Corvallis, 97331, U.S.A
| | - Xiuguo Zhang
- 1 Department of Plant Pathology, Shandong Agricultural University, No. 61, Daizong Street, Taian, Shandong, 271018, China
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He Q, McLellan H, Boevink PC, Sadanandom A, Xie C, Birch PRJ, Tian Z. U-box E3 ubiquitin ligase PUB17 acts in the nucleus to promote specific immune pathways triggered by Phytophthora infestans. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:3189-99. [PMID: 25873665 PMCID: PMC4449539 DOI: 10.1093/jxb/erv128] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Ubiquitination regulates many processes in plants, including immunity. The E3 ubiquitin ligase PUB17 is a positive regulator of programmed cell death (PCD) triggered by resistance proteins CF4/9 in tomato. Its role in immunity to the potato late blight pathogen, Phytophthora infestans, was investigated here. Silencing StPUB17 in potato by RNAi and NbPUB17 in Nicotiana benthamiana by virus-induced gene silencing (VIGS) each enhanced P. infestans leaf colonization. PAMP-triggered immunity (PTI) transcriptional responses activated by flg22, and CF4/Avr4-mediated PCD were attenuated by silencing PUB17. However, silencing PUB17 did not compromise PCD triggered by P. infestans PAMP INF1, or co-expression of R3a/AVR3a, demonstrating that not all PTI- and PCD-associated responses require PUB17. PUB17 localizes to the plant nucleus and especially in the nucleolus. Transient over-expression of a dominant-negative StPUB17(V314I,V316I) mutant, which retained nucleolar localization, suppressed CF4-mediated cell death and enhanced P. infestans colonization. Exclusion of the StPUB17(V314I,V316I) mutant from the nucleus abolished its dominant-negative activity, demonstrating that StPUB17 functions in the nucleus. PUB17 is a positive regulator of immunity to late blight that acts in the nucleus to promote specific PTI and PCD pathways.
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Affiliation(s)
- Qin He
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei, 430070, China and the National Centre for Vegetable Improvement (Central China), Huazhong Agricultural University, Wuhan, Hubei, 430070, China; Division of Plant Sciences, University of Dundee, James Hutton Institute (JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK Dundee Effector Consortium, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Hazel McLellan
- Division of Plant Sciences, University of Dundee, James Hutton Institute (JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK Dundee Effector Consortium, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Petra C Boevink
- Dundee Effector Consortium, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Ari Sadanandom
- Durham Centre for Crop Improvement Technology School of Biological and Biomedical Sciences, Durham University, Durham DH1 3HP, UK
| | - Conghua Xie
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei, 430070, China and the National Centre for Vegetable Improvement (Central China), Huazhong Agricultural University, Wuhan, Hubei, 430070, China
| | - Paul R J Birch
- Division of Plant Sciences, University of Dundee, James Hutton Institute (JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK Dundee Effector Consortium, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Zhendong Tian
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei, 430070, China and the National Centre for Vegetable Improvement (Central China), Huazhong Agricultural University, Wuhan, Hubei, 430070, China;
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Comparative proteomic analysis of hyphae and germinating cysts of Phytophthora pisi and Phytophthora sojae. J Proteomics 2015; 117:24-40. [PMID: 25613045 DOI: 10.1016/j.jprot.2015.01.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2014] [Revised: 12/05/2014] [Accepted: 01/05/2015] [Indexed: 12/13/2022]
Abstract
UNLABELLED The recently described oomycete pathogen Phytophthora pisi causes root rot on pea and faba bean, while the closely related Phytophthora sojae is the causal agent of soybean root and stem rot. Differences in the pathogenicity factor repertoires that enable the two species to have distinct host specificity towards pea and soybean, were studied using tandem mass spectrometry in a global proteome study of hyphae and germinating cysts in P. pisi and P. sojae. In total 2775 proteins from P. pisi and 2891 proteins from P. sojae were identified. Fifty-eight orthologous proteins were more abundant in germinated cysts of both pathogens and thus identified as candidate proteins for the infective stage. Several of these proteins were associated with lipid transport and metabolism, and energy production. Twenty-three orthologous proteins were more abundant in hyphae of both pathogens and thus identified as candidate proteins for vegetative growth. Proteins uniquely present in germinating cysts of either P. pisi or P. sojae were considered as candidates for species-specific pathogenicity factors that may be involved in host specificity. Among these proteins were serine proteases, membrane transporters and a berberine-like protein. These results significantly expand the knowledge of the expressed proteome in P. pisi and P. sojae. BIOLOGICAL SIGNIFICANCE P. sojae and P. pisi are closely related species that specifically cause root rot on soybean and pea, respectively. The pathogenicity factors contributing to their host specificity remained unknown. We carried out a comparative large-scale proteome analysis of vegetative (hyphae) and infective (germinating cysts) life stages in P. pisi and P. sojae. This study provides knowledge of the common factors and mechanism involved in initiation of infection and species-specific proteins that may contribute to the host specificity of these pathogens. This knowledge will lead to a better understanding of the infection biology of these pathogens, allowing new possibilities towards developing alternative and effective plant protection measures.
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Misner I, Blouin N, Leonard G, Richards TA, Lane CE. The secreted proteins of Achlya hypogyna and Thraustotheca clavata identify the ancestral oomycete secretome and reveal gene acquisitions by horizontal gene transfer. Genome Biol Evol 2014; 7:120-35. [PMID: 25527045 PMCID: PMC4316629 DOI: 10.1093/gbe/evu276] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/06/2014] [Indexed: 12/27/2022] Open
Abstract
Saprotrophic and parasitic microorganisms secrete proteins into the environment to breakdown macromolecules and obtain nutrients. The molecules secreted are collectively termed the "secretome" and the composition and function of this set of proteins varies depending on the ecology, life cycle, and environment of an organism. Beyond the function of nutrient acquisition, parasitic lineages must also secrete molecules to manipulate their host. Here, we use a combination of de novo genome and transcriptome sequencing and bioinformatic identification of signal peptides to identify the putative secreted proteome of two oomycetes, the facultative parasite Achlya hypogyna and free-living Thraustotheca clavata. By comparing the secretomes of these saprolegnialean oomycetes with that of eight other oomycetes, we were able to characterize the evolution of this protein set across the oomycete clade. These species span the last common ancestor of the two major oomycete families allowing us to identify the ancestral secretome. This putative ancestral secretome consists of at least 84 gene families. Only 11 of these gene families are conserved across all 10 secretomes analyzed and the two major branches in the oomycete radiation. Notably, we have identified expressed elicitin-like effector genes in the saprotrophic decomposer, T. clavata. Phylogenetic analyses show six novel horizontal gene transfers to the oomycete secretome from bacterial and fungal donor lineages, four of which are specific to the Saprolegnialeans. Comparisons between free-living and pathogenic taxa highlight the functional changes of oomycete secretomes associated with shifts in lifestyle.
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Affiliation(s)
- Ian Misner
- Department of Biological Sciences, The University of Rhode Island Department of Biological Sciences, The University of Maryland, College Park
| | - Nic Blouin
- Department of Biological Sciences, The University of Rhode Island
| | - Guy Leonard
- Biosciences, University of Exeter, United Kingdom
| | - Thomas A Richards
- Biosciences, University of Exeter, United Kingdom Integrated Microbial Biodiversity Program, Canadian Institute for Advanced Research, Toronto, Ontario, Canada
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Xiong Q, Ye W, Choi D, Wong J, Qiao Y, Tao K, Wang Y, Ma W. Phytophthora suppressor of RNA silencing 2 is a conserved RxLR effector that promotes infection in soybean and Arabidopsis thaliana. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2014; 27:1379-89. [PMID: 25387135 DOI: 10.1094/mpmi-06-14-0190-r] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
The genus Phytophthora consists of notorious and emerging pathogens of economically important crops. Each Phytophthora genome encodes several hundreds of cytoplasmic effectors, which are believed to manipulate plant immune response inside the host cells. However, the majority of Phytophthora effectors remain functionally uncharacterized. We recently discovered two effectors from the soybean stem and root rot pathogen Phytophthora sojae with the activity to suppress RNA silencing in plants. These effectors are designated Phytophthora suppressor of RNA silencing (PSRs). Here, we report that the P. sojae PSR2 (PsPSR2) belongs to a conserved and widespread effector family in Phytophthora. A PsPSR2-like effector produced by P. infestans (PiPSR2) can also suppress RNA silencing in plants and promote Phytophthora infection, suggesting that the PSR2 family effectors have conserved functions in plant hosts. Using Agrobacterium rhizogenes-mediated hairy roots induction, we demonstrated that the expression of PsPSR2 rendered hypersusceptibility of soybean to P. sojae. Enhanced susceptibility was also observed in PsPSR2-expressing Arabidopsis thaliana plants during Phytophthora but not bacterial infection. These experiments provide strong evidence that PSR2 is a conserved Phytophthora effector family that performs important virulence functions specifically during Phytophthora infection of various plant hosts.
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Chapman S, Stevens LJ, Boevink PC, Engelhardt S, Alexander CJ, Harrower B, Champouret N, McGeachy K, Van Weymers PSM, Chen X, Birch PRJ, Hein I. Detection of the virulent form of AVR3a from Phytophthora infestans following artificial evolution of potato resistance gene R3a. PLoS One 2014; 9:e110158. [PMID: 25340613 PMCID: PMC4207746 DOI: 10.1371/journal.pone.0110158] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2014] [Accepted: 09/08/2014] [Indexed: 11/24/2022] Open
Abstract
Engineering resistance genes to gain effector recognition is emerging as an important step in attaining broad, durable resistance. We engineered potato resistance gene R3a to gain recognition of the virulent AVR3aEM effector form of Phytophthora infestans. Random mutagenesis, gene shuffling and site-directed mutagenesis of R3a were conducted to produce R3a* variants with gain of recognition towards AVR3aEM. Programmed cell death following gain of recognition was enhanced in iterative rounds of artificial evolution and neared levels observed for recognition of AVR3aKI by R3a. We demonstrated that R3a*-mediated recognition responses, like for R3a, are dependent on SGT1 and HSP90. In addition, this gain of response is associated with re-localisation of R3a* variants from the cytoplasm to late endosomes when co-expressed with either AVR3aKI or AVR3aEM a mechanism that was previously only seen for R3a upon co-infiltration with AVR3aKI. Similarly, AVR3aEM specifically re-localised to the same vesicles upon recognition by R3a* variants, but not with R3a. R3a and R3a* provide resistance to P. infestans isolates expressing AVR3aKI but not those homozygous for AVR3aEM.
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Affiliation(s)
- Sean Chapman
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
| | - Laura J. Stevens
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Dundee Effector Consortium, Invergowrie-Dundee, United Kingdom
| | - Petra C. Boevink
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Dundee Effector Consortium, Invergowrie-Dundee, United Kingdom
| | - Stefan Engelhardt
- Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Dundee Effector Consortium, Invergowrie-Dundee, United Kingdom
| | - Colin J. Alexander
- Biomathematics and Statistics Scotland, Invergowrie-Dundee, United Kingdom
| | - Brian Harrower
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
| | - Nicolas Champouret
- J.R. Simplot Company, Simplot Plant Sciences, Boise, Idaho, United States of America
| | - Kara McGeachy
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
| | - Pauline S. M. Van Weymers
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Dundee Effector Consortium, Invergowrie-Dundee, United Kingdom
| | - Xinwei Chen
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Dundee Effector Consortium, Invergowrie-Dundee, United Kingdom
| | - Paul R. J. Birch
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Dundee Effector Consortium, Invergowrie-Dundee, United Kingdom
| | - Ingo Hein
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Dundee Effector Consortium, Invergowrie-Dundee, United Kingdom
- * E-mail:
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46
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Sharma R, Mishra B, Runge F, Thines M. Gene loss rather than gene gain is associated with a host jump from monocots to dicots in the Smut Fungus Melanopsichium pennsylvanicum. Genome Biol Evol 2014; 6:2034-49. [PMID: 25062916 PMCID: PMC4159001 DOI: 10.1093/gbe/evu148] [Citation(s) in RCA: 80] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
Smut fungi are well-suited to investigate the ecology and evolution of plant pathogens, as they are strictly biotrophic, yet cultivable on media. Here we report the genome sequence of Melanopsichium pennsylvanicum, closely related to Ustilago maydis and other Poaceae-infecting smuts, but parasitic to a dicot plant. To explore the evolutionary patterns resulting from host adaptation after this huge host jump, the genome of Me. pennsylvanicum was sequenced and compared with the genomes of U. maydis, Sporisorium reilianum, and U. hordei. Although all four genomes had a similar completeness in CEGMA (Core Eukaryotic Genes Mapping Approach) analysis, gene absence was highest in Me. pennsylvanicum, and most pronounced in putative secreted proteins, which are often considered as effector candidates. In contrast, the amount of private genes was similar among the species, highlighting that gene loss rather than gene gain is the hallmark of adaptation after the host jump to the dicot host. Our analyses revealed a trend of putative effectors to be next to another putative effector, but the majority of these are not in clusters and thus the focus on pathogenicity clusters might not be appropriate for all smut genomes. Positive selection studies revealed that Me. pennsylvanicum has the highest number and proportion of genes under positive selection. In general, putative effectors showed a higher proportion of positively selected genes than noneffector candidates. The 248 putative secreted effectors found in all four smut genomes might constitute a core set needed for pathogenicity, whereas those 92 that are found in all grass-parasitic smuts but have no ortholog in Me. pennsylvanicum might constitute a set of effectors important for successful colonization of grass hosts.
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Affiliation(s)
- Rahul Sharma
- Biodiversity and Climate Research Centre (BiK-F), Frankfurt am Main, GermanyInstitute of Ecology, Evolution and Diversity, Goethe University, Frankfurt am Main, GermanySenckenberg Gesellschaft für Naturforschung, Frankfurt am Main, GermanyCluster for Integrative Fungal Research (IPF), Frankfurt am Main, Germany
| | - Bagdevi Mishra
- Biodiversity and Climate Research Centre (BiK-F), Frankfurt am Main, GermanyInstitute of Ecology, Evolution and Diversity, Goethe University, Frankfurt am Main, GermanySenckenberg Gesellschaft für Naturforschung, Frankfurt am Main, Germany
| | - Fabian Runge
- Institute of Botany 210, University of Hohenheim, Stuttgart, Germany
| | - Marco Thines
- Biodiversity and Climate Research Centre (BiK-F), Frankfurt am Main, GermanyInstitute of Ecology, Evolution and Diversity, Goethe University, Frankfurt am Main, GermanySenckenberg Gesellschaft für Naturforschung, Frankfurt am Main, GermanyCluster for Integrative Fungal Research (IPF), Frankfurt am Main, Germany
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47
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Segretin ME, Pais M, Franceschetti M, Chaparro-Garcia A, Bos JIB, Banfield MJ, Kamoun S. Single amino acid mutations in the potato immune receptor R3a expand response to Phytophthora effectors. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2014; 27:624-37. [PMID: 24678835 DOI: 10.1094/mpmi-02-14-0040-r] [Citation(s) in RCA: 81] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Both plants and animals rely on nucleotide-binding domain and leucine-rich repeat-containing (NB-LRR or NLR) proteins to respond to invading pathogens and activate immune responses. How plant NB-LRR proteins respond to pathogens is poorly understood. We undertook a gain-of-function random mutagenesis screen of the potato NB-LRR immune receptor R3a to study how this protein responds to the effector protein AVR3a from the oomycete pathogen Phytophthora infestans. R3a response can be extended to the stealthy AVR3aEM isoform of the effector while retaining recognition of AVR3aKI. Each one of eight single amino acid mutations is sufficient to expand the R3a response to AVR3aEM and other AVR3a variants. These mutations occur across the R3a protein, from the N terminus to different regions of the LRR domain. Further characterization of these R3a mutants revealed that at least one of them was sensitized, exhibiting a stronger response than the wild-type R3a protein to AVR3aKI. Remarkably, the N336Y mutation, near the R3a nucleotide-binding pocket, conferred response to the effector protein PcAVR3a4 from the vegetable pathogen P. capsici. This work contributes to understanding how NB-LRR receptor specificity can be modulated. Together with knowledge of pathogen effector diversity, this strategy can be exploited to develop synthetic immune receptors.
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48
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Bougdour A, Tardieux I, Hakimi MA. Toxoplasmaexports dense granule proteins beyond the vacuole to the host cell nucleus and rewires the host genome expression. Cell Microbiol 2014; 16:334-43. [DOI: 10.1111/cmi.12255] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2013] [Revised: 12/17/2013] [Accepted: 12/18/2013] [Indexed: 12/21/2022]
Affiliation(s)
- Alexandre Bougdour
- CNRS; UMR5163; LAPM; Grenoble 38041 France
- Université Joseph Fourier; Grenoble 38000 France
| | - Isabelle Tardieux
- Institut Cochin; INSERM U1016; CNRS UMR 8104; Université Paris Descartes; Paris 75014 France
| | - Mohamed-Ali Hakimi
- CNRS; UMR5163; LAPM; Grenoble 38041 France
- Université Joseph Fourier; Grenoble 38000 France
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49
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Tomé DFA, Steinbrenner J, Beynon JL. A growth quantification assay for Hyaloperonospora arabidopsidis isolates in Arabidopsis thaliana. Methods Mol Biol 2014; 1127:145-58. [PMID: 24643559 DOI: 10.1007/978-1-62703-986-4_12] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2023]
Abstract
There is a considerable interest in determining the role of individual oomycete effectors in promoting disease. Widely used strategies are based on manipulating effector-expression levels in the pathogen and by over-expressing particular effectors in the host by genetic transformation. In the case of the oomycete, Hyaloperonospora arabidopsidis (Hpa) genetic manipulation is not yet possible, so over-expression of predicted effectors in stably transformed Arabidopsis lines is used to investigate their capability for promoting virulence. Here, we describe a technique for quantifying pathogen growth based on the counting of asexual reproductive structures called sporangiophores in the compatible interaction between the Hpa isolate Noks1 and the Col-0 Arabidopsis accession.
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Affiliation(s)
- Daniel F A Tomé
- School of Life Sciences, Warwick University, Gibbet Hill Campus, Coventry, CV4 7 AL, United Kingdom
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50
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McLellan H, Boevink PC, Armstrong MR, Pritchard L, Gomez S, Morales J, Whisson SC, Beynon JL, Birch PRJ. An RxLR effector from Phytophthora infestans prevents re-localisation of two plant NAC transcription factors from the endoplasmic reticulum to the nucleus. PLoS Pathog 2013; 9:e1003670. [PMID: 24130484 PMCID: PMC3795001 DOI: 10.1371/journal.ppat.1003670] [Citation(s) in RCA: 166] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2013] [Accepted: 08/15/2013] [Indexed: 12/20/2022] Open
Abstract
The potato late blight pathogen Phytophthora infestans secretes an array of effector proteins thought to act in its hosts by disarming defences and promoting pathogen colonisation. However, little is known about the host targets of these effectors and how they are manipulated by the pathogen. This work describes the identification of two putative membrane-associated NAC transcription factors (TF) as the host targets of the RxLR effector PITG_03192 (Pi03192). The effector interacts with NAC Targeted by Phytophthora (NTP) 1 and NTP2 at the endoplasmic reticulum (ER) membrane, where these proteins are localised. Transcripts of NTP1 and NTP2 rapidly accumulate following treatment with culture filtrate (CF) from in vitro grown P. infestans, which acts as a mixture of Phytophthora PAMPs and elicitors, but significantly decrease during P. infestans infection, indicating that pathogen activity may prevent their up-regulation. Silencing of NTP1 or NTP2 in the model host plant Nicotiana benthamiana increases susceptibility to P. infestans, whereas silencing of Pi03192 in P. infestans reduces pathogenicity. Transient expression of Pi03192 in planta restores pathogenicity of the Pi03192-silenced line. Moreover, colonisation by the Pi03192-silenced line is significantly enhanced on N. benthamiana plants in which either NTP1 or NTP2 have been silenced. StNTP1 and StNTP2 proteins are released from the ER membrane following treatment with P. infestans CF and accumulate in the nucleus, after which they are rapidly turned over by the 26S proteasome. In contrast, treatment with the defined PAMP flg22 fails to up-regulate NTP1 and NTP2, or promote re-localisation of their protein products to the nucleus, indicating that these events follow perception of a component of CF that appears to be independent of the FLS2/flg22 pathway. Importantly, Pi03192 prevents CF-triggered re-localisation of StNTP1 and StNTP2 from the ER into the nucleus, revealing a novel effector mode-of-action to promote disease progression.
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Affiliation(s)
- Hazel McLellan
- The Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
| | - Petra C. Boevink
- Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, United Kingdom
| | - Miles R. Armstrong
- The Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
| | - Leighton Pritchard
- Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Information and Computational Sciences, JHI, Invergowrie, Dundee, United Kingdom
| | - Sonia Gomez
- The Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Departamento de Ciencias Agronómicas, Universidad Nacional de Colombia, Sede Medellin, Medellin, Colombia
| | - Juan Morales
- Departamento de Ciencias Agronómicas, Universidad Nacional de Colombia, Sede Medellin, Medellin, Colombia
| | - Stephen C. Whisson
- Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, United Kingdom
| | - Jim L. Beynon
- Life Sciences and Systems Biology, University of Warwick, Coventry, United Kingdom
| | - Paul R. J. Birch
- The Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, United Kingdom
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