1
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Wang S, Birch PRJ, Jin H. Extracellular vesicles: a new avenue for mRNA delivery. Trends Plant Sci 2024:S1360-1385(24)00090-6. [PMID: 38616477 DOI: 10.1016/j.tplants.2024.04.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Revised: 03/25/2024] [Accepted: 04/09/2024] [Indexed: 04/16/2024]
Abstract
Recent research reveals that plant mRNAs, packaged in extracellular vesicles, are delivered into fungal pathogen cells. Remarkably, the transferred mRNAs are translated by fungal ribosomes, generating functional proteins that impede infection. These findings offer new promising avenues to modify cellular performance by rapid delivery of mRNAs in plant-derived vesicles.
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Affiliation(s)
- Shumei Wang
- Division of Plant Sciences, School of Life Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK.
| | - Paul R J Birch
- Division of Plant Sciences, School of Life Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK; Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK
| | - Hailing Jin
- Department of Microbiology and Plant Pathology, Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA, USA.
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2
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Bentham AR, Wang W, Trusch F, Varden FA, Birch PRJ, Banfield MJ. The WY Domain of an RxLr Effector Drives Interactions with a Host Target Phosphatase to Mimic Host Regulatory Proteins and Promote Phytophthora infestans Infection. Mol Plant Microbe Interact 2024; 37:239-249. [PMID: 37921637 DOI: 10.1094/mpmi-08-23-0118-fi] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/04/2023]
Abstract
Plant pathogens manipulate the cellular environment of the host to facilitate infection and colonization that often lead to plant diseases. To accomplish this, many specialized pathogens secrete virulence proteins called effectors into the host cell, which subvert processes such as immune signaling, gene transcription, and host metabolism. Phytophthora infestans, the causative agent of potato late blight, employs an expanded repertoire of RxLR effectors with WY domains to manipulate the host through direct interaction with protein targets. However, our understanding of the molecular mechanisms underlying the interactions between WY effectors and their host targets remains limited. In this study, we performed a structural and biophysical characterization of the P. infestans WY effector Pi04314 in complex with the potato Protein Phosphatase 1-c (PP1c). We elucidate how Pi04314 uses a WY domain and a specialized C-terminal loop carrying a KVxF motif that interact with conserved surfaces on PP1c, known to be used by host regulatory proteins for guiding function. Through biophysical and in planta analyses, we demonstrate that Pi04314 WY or KVxF mutants lose their ability to bind PP1c. The loss of PP1c binding correlates with changes in PP1c nucleolar localization and a decrease in lesion size in plant infection assays. This study provides insights into the manipulation of plant hosts by pathogens, revealing how effectors exploit key regulatory interfaces in host proteins to modify their function and facilitate disease. [Formula: see text] Copyright © 2024 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.
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Affiliation(s)
- Adam R Bentham
- Department of Biochemistry and Metabolism, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, U.K
| | - Wei Wang
- Department of Cell and Molecular Sciences, James Hutton Institute, Invergowrie DD2 5DA, Dundee, U.K
- Division of Plant Sciences, College of Life Science, University of Dundee (at JHI), Invergowrie DD2 5DA, Dundee, U.K
| | - Franziska Trusch
- Department of Cell and Molecular Sciences, James Hutton Institute, Invergowrie DD2 5DA, Dundee, U.K
- Division of Plant Sciences, College of Life Science, University of Dundee (at JHI), Invergowrie DD2 5DA, Dundee, U.K
| | - Freya A Varden
- Department of Biochemistry and Metabolism, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, U.K
| | - Paul R J Birch
- Department of Cell and Molecular Sciences, James Hutton Institute, Invergowrie DD2 5DA, Dundee, U.K
- Division of Plant Sciences, College of Life Science, University of Dundee (at JHI), Invergowrie DD2 5DA, Dundee, U.K
| | - Mark J Banfield
- Department of Biochemistry and Metabolism, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, U.K
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3
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Wang S, He B, Wu H, Cai Q, Ramírez-Sánchez O, Abreu-Goodger C, Birch PRJ, Jin H. Plant mRNAs move into a fungal pathogen via extracellular vesicles to reduce infection. Cell Host Microbe 2024; 32:93-105.e6. [PMID: 38103543 PMCID: PMC10872371 DOI: 10.1016/j.chom.2023.11.020] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 10/17/2023] [Accepted: 11/20/2023] [Indexed: 12/19/2023]
Abstract
Cross-kingdom small RNA trafficking between hosts and microbes modulates gene expression in the interacting partners during infection. However, whether other RNAs are also transferred is unclear. Here, we discover that host plant Arabidopsis thaliana delivers mRNAs via extracellular vesicles (EVs) into the fungal pathogen Botrytis cinerea. A fluorescent RNA aptamer reporter Broccoli system reveals host mRNAs in EVs and recipient fungal cells. Using translating ribosome affinity purification profiling and polysome analysis, we observe that delivered host mRNAs are translated in fungal cells. Ectopic expression of two transferred host mRNAs in B. cinerea shows that their proteins are detrimental to infection. Arabidopsis knockout mutants of the genes corresponding to these transferred mRNAs are more susceptible. Thus, plants have a strategy to reduce infection by transporting mRNAs into fungal cells. mRNAs transferred from plants to pathogenic fungi are translated to compromise infection, providing knowledge that helps combat crop diseases.
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Affiliation(s)
- Shumei Wang
- Department of Microbiology and Plant Pathology, Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA, USA
| | - Baoye He
- Department of Microbiology and Plant Pathology, Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA, USA
| | - Huaitong Wu
- Department of Microbiology and Plant Pathology, Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA, USA
| | - Qiang Cai
- State Key Laboratory of Hybrid Rice, College of Life Science, Wuhan University, Wuhan, China
| | - Obed Ramírez-Sánchez
- National Laboratory of Genomics for Biodiversity (Langebio), Cinvestav, Irapuato 36821 Guanajuato, Mexico
| | - Cei Abreu-Goodger
- Institute of Ecology and Evolution, School of Biological Sciences, the University of Edinburgh, Edinburgh EH9 3FL, UK
| | - Paul R J Birch
- Division of Plant Sciences, School of Life Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK; Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK
| | - Hailing Jin
- Department of Microbiology and Plant Pathology, Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA, USA.
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4
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Wang S, McLellan H, Boevink PC, Birch PRJ. RxLR Effectors: Master Modulators, Modifiers and Manipulators. Mol Plant Microbe Interact 2023; 36:754-763. [PMID: 37750829 DOI: 10.1094/mpmi-05-23-0054-cr] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/27/2023]
Abstract
Cytoplasmic effectors with an Arg-any amino acid-Arg-Leu (RxLR) motif are encoded by hundreds of genes within the genomes of oomycete Phytophthora spp. and downy mildew pathogens. There has been a dramatic increase in our understanding of the evolution, function, and recognition of these effectors. Host proteins with a wide range of subcellular localizations and functions are targeted by RxLR effectors. Many processes are manipulated, including transcription, post-translational modifications, such as phosphorylation and ubiquitination, secretion, and intracellular trafficking. This involves an array of RxLR effector modes-of-action, including stabilization or destabilization of protein targets, altering or disrupting protein complexes, inhibition or utility of target enzyme activities, and changing the location of protein targets. Interestingly, approximately 50% of identified host proteins targeted by RxLR effectors are negative regulators of immunity. Avirulence RxLR effectors may be directly or indirectly detected by nucleotide-binding leucine-rich repeat resistance (NLR) proteins. Direct recognition by a single NLR of RxLR effector orthologues conserved across multiple Phytophthora pathogens may provide wide protection of diverse crops. Failure of RxLR effectors to interact with or appropriately manipulate target proteins in nonhost plants has been shown to restrict host range. This knowledge can potentially be exploited to alter host targets to prevent effector interaction, providing a barrier to host infection. Finally, recent evidence suggests that RxLR effectors, like cytoplasmic effectors from fungal pathogen Magnaporthe oryzae, may enter host cells via clathrin-mediated endocytosis. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
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Affiliation(s)
- Shumei Wang
- Department of Microbiology and Plant Pathology, Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA, U.S.A
| | - Hazel McLellan
- Division of Plant Sciences, School of Life Sciences, University of Dundee, at James Hutton Institute, Invergowrie, Dundee DD2 5DA, U.K
| | - Petra C Boevink
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, U.K
| | - Paul R J Birch
- Division of Plant Sciences, School of Life Sciences, University of Dundee, at James Hutton Institute, Invergowrie, Dundee DD2 5DA, U.K
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, U.K
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5
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Wang H, Oliveira-Garcia E, Boevink PC, Talbot NJ, Birch PRJ, Valent B. Filamentous pathogen effectors enter plant cells via endocytosis. Trends Plant Sci 2023; 28:1214-1217. [PMID: 37586981 DOI: 10.1016/j.tplants.2023.07.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Revised: 07/27/2023] [Accepted: 07/28/2023] [Indexed: 08/18/2023]
Abstract
Recent findings demonstrate that cytoplasmic effectors from fungal and oomycete pathogens enter plant cells via clathrin-mediated endocytosis (CME). This raises several questions: Does effector secretion pathway facilitate host uptake? How is CME triggered in host cells? How are the effectors released from endosomal compartments to reach diverse subcellular destinations?
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Affiliation(s)
- Haixia Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant Protection, Northwest Agriculture & Forestry University, Yangling, Shanxi 712100, China; Division of Plant Science, School of Life Sciences, University of Dundee, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Ely Oliveira-Garcia
- Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA; Department of Plant Pathology and Crop Physiology, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, USA
| | - Petra C Boevink
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Nicholas J Talbot
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK
| | - Paul R J Birch
- Division of Plant Science, School of Life Sciences, University of Dundee, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK; Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK.
| | - Barbara Valent
- Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA.
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6
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Wang Y, Li M, Ying J, Shen J, Dou D, Yin M, Whisson SC, Birch PRJ, Yan S, Wang X. High-efficiency green management of potato late blight by a self-assembled multicomponent nano-bioprotectant. Nat Commun 2023; 14:5622. [PMID: 37699893 PMCID: PMC10497615 DOI: 10.1038/s41467-023-41447-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 09/02/2023] [Indexed: 09/14/2023] Open
Abstract
Potato late blight caused by Phytophthora infestans is a devastating disease worldwide. Unlike other plant pathogens, double-stranded RNA (dsRNA) is poorly taken up by P. infestans, which is a key obstacle in using dsRNA for disease control. Here, a self-assembled multicomponent nano-bioprotectant for potato late blight management is designed based on dsRNA and a plant elicitor. Nanotechnology overcomes the dsRNA delivery bottleneck for P. infestans and extends the RNAi protective window. The protective effect of nano-enabled dsRNA against infection arises from a synergistic mechanism that bolsters the stability of dsRNA and optimizes its effective intracellular delivery. Additionally, the nano-enabled elicitor enhances endocytosis and amplifies the systemic defense response of the plants. Co-delivery of dsRNA and an elicitor provides a protective effect via the two aspects of pathogen inhibition and elevated plant defense mechanisms. The multicomponent nano-bioprotectant exhibits superior control efficacy compared to a commercial synthetic pesticide in field conditions. This work proposes an eco-friendly strategy to manage devastating plant diseases and pests.
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Affiliation(s)
- Yuxi Wang
- College of Plant Protection, China Agricultural University, Beijing, 100193, China
| | - Mingshan Li
- College of Plant Protection, China Agricultural University, Beijing, 100193, China
| | - Jiahan Ying
- College of Plant Protection, China Agricultural University, Beijing, 100193, China
| | - Jie Shen
- College of Plant Protection, China Agricultural University, Beijing, 100193, China
| | - Daolong Dou
- College of Plant Protection, China Agricultural University, Beijing, 100193, China
- College of Plant Protection, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, 210095, China
| | - Meizhen Yin
- State Key Laboratory of Chemical Resource Engineering, Beijing Lab of Biomedical Materials, Beijing University of Chemical Technology, Beijing, 100029, China
| | - Stephen C Whisson
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Paul R J Birch
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
- Division of Plant Sciences, School of Life Science, University of Dundee (at James Hutton Institute), Invergowrie, Dundee, DD2 5DA, UK
| | - Shuo Yan
- College of Plant Protection, China Agricultural University, Beijing, 100193, China.
| | - Xiaodan Wang
- College of Plant Protection, China Agricultural University, Beijing, 100193, China.
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7
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McLellan H, Boevink PC, Birch PRJ. How to convert host plants into nonhosts. Trends Plant Sci 2023; 28:876-879. [PMID: 37270351 DOI: 10.1016/j.tplants.2023.05.008] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 05/14/2023] [Accepted: 05/15/2023] [Indexed: 06/05/2023]
Abstract
Recent research demonstrates that undermining interactions between pathogen effectors and their host target proteins can reduce infection. As more effector-target pairs are identified, their structures and interaction surfaces exposed, and there is the possibility of making multiple edits to diverse plant genomes, the desire to convert crops to nonhosts could become reality.
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Affiliation(s)
- Hazel McLellan
- Division of Plant Science, School of Life Sciences, University of Dundee, @James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Petra C Boevink
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Paul R J Birch
- Division of Plant Science, School of Life Sciences, University of Dundee, @James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK; Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK.
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8
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Wang H, Wang S, Wang W, Xu L, Welsh LRJ, Gierlinski M, Whisson SC, Hemsley PA, Boevink PC, Birch PRJ. Uptake of oomycete RXLR effectors into host cells by clathrin-mediated endocytosis. Plant Cell 2023:koad069. [PMID: 36911990 DOI: 10.1093/plcell/koad069] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Revised: 02/09/2023] [Accepted: 02/09/2023] [Indexed: 06/18/2023]
Abstract
Filamentous (oomycete and fungal) plant pathogens deliver cytoplasmic effector proteins into host cells to facilitate disease. How RXLR effectors from the potato late blight pathogen Phytophthora infestans enter host cells is unknown. One possible route involves clathrin-mediated endocytosis (CME). Transient silencing of NbCHC, encoding clathrin heavy chain, or the endosome marker gene NbAra6 encoding a Rab GTPase in the model host Nicotiana benthamiana, attenuated P. infestans infection and reduced translocation of RXLR effector fusions from transgenic pathogen strains into host cells. By contrast, silencing PP1c isoforms, susceptibility factors not required for endocytosis, reduced infection but did not attenuate RXLR effector uptake. Endosome enrichment by ultracentrifugation and sucrose gradient fractionation revealed co-localization of RXLR effector Pi04314-RFP with clathrin-coated vesicles. Immunopurification of clathrin- and NbAra6-associated vesicles during infection showed that RXLR effectors Pi04314-RFP and AvrBlb1-RFP, but not apoplastic effector PiSCR74-RFP, were co-immunoprecipitated during infection with pathogen strains secreting these effectors. Tandem mass spectrometry analyses of proteins co-immunoprecipitated with NbAra6-GFP during infection revealed enrichment of host proteins associated with endocytic vesicles alongside multiple pathogen RXLR effectors, but not apoplastic effectors, including PiSCR74, which do not enter host cells. Our data show that uptake of P. infestans RXLR effectors into plant cells occurs via CME.
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Affiliation(s)
- Haixia Wang
- Division of Plant Science, School of Life Sciences, University of Dundee, @James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Shumei Wang
- Division of Plant Science, School of Life Sciences, University of Dundee, @James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
- Department of Microbiology and Plant Pathology and Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, California 92507, USA
| | - Wei Wang
- Division of Plant Science, School of Life Sciences, University of Dundee, @James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Lin Xu
- Division of Plant Science, School of Life Sciences, University of Dundee, @James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Lydia R J Welsh
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Marek Gierlinski
- Data Analysis Group, Division of Computational Biology, School of Life Sciences, University of Dundee, Dow Street, DD1 5EH, Dundee, UK
| | - Stephen C Whisson
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Piers A Hemsley
- Division of Plant Science, School of Life Sciences, University of Dundee, @James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Petra C Boevink
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Paul R J Birch
- Division of Plant Science, School of Life Sciences, University of Dundee, @James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
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9
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Breen S, McLellan H, Birch PRJ, Gilroy EM. Tuning the Wavelength: Manipulation of Light Signaling to Control Plant Defense. Int J Mol Sci 2023; 24:ijms24043803. [PMID: 36835216 PMCID: PMC9958957 DOI: 10.3390/ijms24043803] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Revised: 02/06/2023] [Accepted: 02/09/2023] [Indexed: 02/17/2023] Open
Abstract
The growth-defense trade-off in plants is a phenomenon whereby plants must balance the allocation of their resources between developmental growth and defense against attack by pests and pathogens. Consequently, there are a series of points where growth signaling can negatively regulate defenses and where defense signaling can inhibit growth. Light perception by various photoreceptors has a major role in the control of growth and thus many points where it can influence defense. Plant pathogens secrete effector proteins to manipulate defense signaling in their hosts. Evidence is emerging that some of these effectors target light signaling pathways. Several effectors from different kingdoms of life have converged on key chloroplast processes to take advantage of regulatory crosstalk. Moreover, plant pathogens also perceive and react to light in complex ways to regulate their own growth, development, and virulence. Recent work has shown that varying light wavelengths may provide a novel way of controlling or preventing disease outbreaks in plants.
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Affiliation(s)
- Susan Breen
- Division of Plant Sciences, University of Dundee, At James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Hazel McLellan
- Division of Plant Sciences, University of Dundee, At James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Paul R. J. Birch
- Division of Plant Sciences, University of Dundee, At James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Eleanor M. Gilroy
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
- Correspondence: ; Tel.: +44-1382568827
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10
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Zhou J, Qi Y, Nie J, Guo L, Luo M, McLellan H, Boevink PC, Birch PRJ, Tian Z. A Phytophthora effector promotes homodimerization of host transcription factor StKNOX3 to enhance susceptibility. J Exp Bot 2022; 73:6902-6915. [PMID: 35816329 DOI: 10.1093/jxb/erac308] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Accepted: 07/11/2022] [Indexed: 06/15/2023]
Abstract
Oomycete pathogens secrete hundreds of cytoplasmic RxLR effectors to modulate host immunity by targeting diverse plant proteins. Revealing how effectors manipulate host proteins is pivotal to understanding infection processes and to developing new strategies to control plant disease. Here we show that the Phytophthora infestans RxLR effector Pi22798 interacts in the nucleus with a potato class II knotted-like homeobox (KNOX) transcription factor, StKNOX3. Silencing the ortholog NbKNOX3 in Nicotiana benthamiana reduces host colonization by P. infestans, whereas transient and stable overexpression of StKNOX3 enhances infection. StKNOX3 forms a homodimer which is dependent on its KNOX II domain. The KNOX II domain is also essential for Pi22798 interaction and for StKNOX3 to enhance P. infestans colonization, indicating that StKNOX3 homodimerization contributes to susceptibility. However, critically, the effector Pi22798 promotes StKNOX3 homodimerization, rather than heterodimerization to another KNOX transcription factor StKNOX7. These results demonstrate that the oomycete effector Pi22798 increases pathogenicity by promoting homodimerization specifically of StKNOX3 to enhance susceptibility.
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Affiliation(s)
- Jing Zhou
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Huazhong Agricultural University (HZAU), Wuhan, Hubei, China
- Key Laboratory of Potato Biology and Biotechnology (HZAU), Ministry of Agriculture and Rural Affairs, Wuhan, China
- Potato Engineering and Technology Research Center of Hubei Province (HZAU), Wuhan, China
- Hubei Hongshan Laboratory (HZAU), Hubei Province, Wuhan, China
| | - Yetong Qi
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Huazhong Agricultural University (HZAU), Wuhan, Hubei, China
- Key Laboratory of Potato Biology and Biotechnology (HZAU), Ministry of Agriculture and Rural Affairs, Wuhan, China
- Potato Engineering and Technology Research Center of Hubei Province (HZAU), Wuhan, China
| | - Jiahui Nie
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Huazhong Agricultural University (HZAU), Wuhan, Hubei, China
- Key Laboratory of Potato Biology and Biotechnology (HZAU), Ministry of Agriculture and Rural Affairs, Wuhan, China
- Potato Engineering and Technology Research Center of Hubei Province (HZAU), Wuhan, China
| | - Lei Guo
- College of Agronomy, Northeast Agricultural University, Harbin, China
| | - Ming Luo
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Huazhong Agricultural University (HZAU), Wuhan, Hubei, China
- Key Laboratory of Potato Biology and Biotechnology (HZAU), Ministry of Agriculture and Rural Affairs, Wuhan, China
- Potato Engineering and Technology Research Center of Hubei Province (HZAU), Wuhan, China
| | - Hazel McLellan
- Division of Plant Sciences, University of Dundee, At James Hutton Institute, Invergowrie, Dundee, UK
| | - Petra C Boevink
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, UK
| | - Paul R J Birch
- Division of Plant Sciences, University of Dundee, At James Hutton Institute, Invergowrie, Dundee, UK
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, UK
| | - Zhendong Tian
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Huazhong Agricultural University (HZAU), Wuhan, Hubei, China
- Key Laboratory of Potato Biology and Biotechnology (HZAU), Ministry of Agriculture and Rural Affairs, Wuhan, China
- Potato Engineering and Technology Research Center of Hubei Province (HZAU), Wuhan, China
- Hubei Hongshan Laboratory (HZAU), Hubei Province, Wuhan, China
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11
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Naqvi S, He Q, Trusch F, Qiu H, Pham J, Sun Q, Christie JM, Gilroy EM, Birch PRJ. Blue-light receptor phototropin 1 suppresses immunity to promote Phytophthora infestans infection. New Phytol 2022; 233:2282-2293. [PMID: 34923631 PMCID: PMC9255860 DOI: 10.1111/nph.17929] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Accepted: 11/04/2021] [Indexed: 06/14/2023]
Abstract
Blue-light (BL) phototropin receptors (phot1 and phot2) regulate plant growth by activating NPH3/RPT2-like (NRL) family members. Little is known about roles for BL and phots in regulating plant immunity. We showed previously that Phytophthora infestans RXLR effector Pi02860 targets potato (St)NRL1, promoting its ability to enhance susceptibility by facilitating proteasome-mediated degradation of the immune regulator StSWAP70. This raises the question: do BL and phots negatively regulate immunity? We employed coimmunoprecipitation, virus-induced gene silencing, transient overexpression and targeted mutation to investigate contributions of phots to regulating immunity. Whereas transient overexpression of Stphot1 and Stphot2 enhances P. infestans colonization of Nicotiana benthamiana, silencing endogenous Nbphot1 or Nbphot2 reduces infection. Stphot1, but not Stphot2, suppressed the INF1-triggered cell death (ICD) immune response in a BL- and NRL1-dependent manner. Stphot1, when coexpressed with StNRL1, promotes degradation of StSWAP70, whereas Stphot2 does not. Kinase-dead Stphot1 fails to suppress ICD, enhance P. infestans colonization or promote StSWAP70 degradation. Critically, BL enhances P. infestans infection, which probably involves phots but not other BL receptors such as cryptochromes and F-box proteins ZTL1 and FKF1. We demonstrate that Stphot1 and Stphot2 play different roles in promoting susceptibility, and Stphot1 kinase activity is required for BL- and StNRL1-mediated immune suppression.
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Affiliation(s)
- Shaista Naqvi
- Division of Plant SciencesJames Hutton InstituteUniversity of Dundee School of Life SciencesErrol RdInvergowrie, DundeeDD2 5DAUK
| | - Qin He
- Division of Plant SciencesJames Hutton InstituteUniversity of Dundee School of Life SciencesErrol RdInvergowrie, DundeeDD2 5DAUK
- Key Laboratory of Horticultural Plant Biology (HZAU)Ministry of EducationKey Laboratory of Potato Biology and Biotechnology (HZAU)Ministry of Agriculture and Rural AffairsHuazhong Agricultural UniversityWuhanHubei430070China
| | - Franziska Trusch
- Division of Plant SciencesJames Hutton InstituteUniversity of Dundee School of Life SciencesErrol RdInvergowrie, DundeeDD2 5DAUK
| | - Huishan Qiu
- Key Laboratory of Horticultural Plant Biology (HZAU)Ministry of EducationKey Laboratory of Potato Biology and Biotechnology (HZAU)Ministry of Agriculture and Rural AffairsHuazhong Agricultural UniversityWuhanHubei430070China
| | - Jasmine Pham
- Division of Plant SciencesJames Hutton InstituteUniversity of Dundee School of Life SciencesErrol RdInvergowrie, DundeeDD2 5DAUK
| | - Qingguo Sun
- Key Laboratory of Horticultural Plant Biology (HZAU)Ministry of EducationKey Laboratory of Potato Biology and Biotechnology (HZAU)Ministry of Agriculture and Rural AffairsHuazhong Agricultural UniversityWuhanHubei430070China
| | - John M. Christie
- Institute of Molecular, Cell and Systems BiologyCollege of Medical, Veterinary, and Life SciencesUniversity of GlasgowGlasgowG12 8QQUK
| | - Eleanor M. Gilroy
- Cell and Molecular ScienceJames Hutton InstituteInvergowrie, DundeeDD2 5DAUK
| | - Paul R. J. Birch
- Division of Plant SciencesJames Hutton InstituteUniversity of Dundee School of Life SciencesErrol RdInvergowrie, DundeeDD2 5DAUK
- Cell and Molecular ScienceJames Hutton InstituteInvergowrie, DundeeDD2 5DAUK
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12
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Wang H, Trusch F, Turnbull D, Aguilera-Galvez C, Breen S, Naqvi S, Jones JDG, Hein I, Tian Z, Vleeshouwers V, Gilroy E, Birch PRJ. Evolutionarily distinct resistance proteins detect a pathogen effector through its association with different host targets. New Phytol 2021; 232:1368-1381. [PMID: 34339518 DOI: 10.1111/nph.17660] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2021] [Accepted: 07/26/2021] [Indexed: 06/13/2023]
Abstract
Knowledge of the evolutionary processes which govern pathogen recognition is critical to understanding durable disease resistance. We determined how Phytophthora infestans effector PiAVR2 is recognised by evolutionarily distinct resistance proteins R2 and Rpi-mcq1. We employed yeast two-hybrid, co-immunoprecipitation, virus-induced gene silencing, transient overexpression, and phosphatase activity assays to investigate the contributions of BSL phosphatases to R2- and Rpi-mcq1-mediated hypersensitive response (R2 HR and Rpi-mcq1 HR, respectively). Silencing PiAVR2 target BSL1 compromises R2 HR. Rpi-mcq1 HR is compromised only when BSL2 and BSL3 are silenced. BSL1 overexpression increases R2 HR and compromises Rpi-mcq1. However, overexpression of BSL2 or BSL3 enhances Rpi-mcq1 and compromises R2 HR. Okadaic acid, which inhibits BSL phosphatase activity, suppresses both recognition events. Moreover, expression of a BSL1 phosphatase-dead (PD) mutant suppresses R2 HR, whereas BSL2-PD and BSL3-PD mutants suppress Rpi-mcq1 HR. R2 interacts with BSL1 in the presence of PiAVR2, but not with BSL2 and BSL3, whereas no interactions were detected between Rpi-mcq1 and BSLs. Thus, BSL1 activity and association with R2 determine recognition of PiAVR2 by R2, whereas BSL2 and BSL3 mediate Rpi-mcq1 perception of PiAVR2. R2 and Rpi-mcq1 utilise distinct mechanisms to detect PiAVR2 based on association with different BSLs, highlighting central roles of these effector targets for both disease and disease resistance.
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Affiliation(s)
- Haixia Wang
- Division of Plant Sciences, University of Dundee, At James Hutton Institute, Errol Rd, Invergowrie, Dundee, DD2 5DA, UK
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Key Laboratory of Potato Biology and Biotechnology (HZAU), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, Hubei, 430070, China
| | - Franziska Trusch
- Division of Plant Sciences, University of Dundee, At James Hutton Institute, Errol Rd, Invergowrie, Dundee, DD2 5DA, UK
| | - Dionne Turnbull
- Division of Plant Sciences, University of Dundee, At James Hutton Institute, Errol Rd, Invergowrie, Dundee, DD2 5DA, UK
| | - Carolina Aguilera-Galvez
- Plant Breeding, Wageningen University and Research, Droevendaalsesteeg 1, Wageningen, 6708 PB, the Netherlands
| | - Susan Breen
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 DA, UK
- School of Life Sciences, The University of Warwick, Gibbet Hill Campus, Coventry, CV4 7AL, UK
| | - Shaista Naqvi
- Division of Plant Sciences, University of Dundee, At James Hutton Institute, Errol Rd, Invergowrie, Dundee, DD2 5DA, UK
| | | | - Ingo Hein
- Division of Plant Sciences, University of Dundee, At James Hutton Institute, Errol Rd, Invergowrie, Dundee, DD2 5DA, UK
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 DA, UK
| | - Zhendong Tian
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Key Laboratory of Potato Biology and Biotechnology (HZAU), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, Hubei, 430070, China
| | - Vivianne Vleeshouwers
- Plant Breeding, Wageningen University and Research, Droevendaalsesteeg 1, Wageningen, 6708 PB, the Netherlands
| | - Eleanor Gilroy
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 DA, UK
| | - Paul R J Birch
- Division of Plant Sciences, University of Dundee, At James Hutton Institute, Errol Rd, Invergowrie, Dundee, DD2 5DA, UK
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 DA, UK
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13
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Wang S, Vetukuri RR, Kushwaha SK, Hedley PE, Morris J, Studholme DJ, Welsh LRJ, Boevink PC, Birch PRJ, Whisson SC. Haustorium formation and a distinct biotrophic transcriptome characterize infection of Nicotiana benthamiana by the tree pathogen Phytophthora kernoviae. Mol Plant Pathol 2021; 22:954-968. [PMID: 34018655 PMCID: PMC8295517 DOI: 10.1111/mpp.13072] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Revised: 03/17/2021] [Accepted: 03/26/2021] [Indexed: 05/29/2023]
Abstract
Phytophthora species cause some of the most serious diseases of trees and threaten forests in many parts of the world. Despite the generation of genome sequence assemblies for over 10 tree-pathogenic Phytophthora species and improved detection methods, there are many gaps in our knowledge of how these pathogens interact with their hosts. To facilitate cell biology studies of the infection cycle we examined whether the tree pathogen Phytophthora kernoviae could infect the model plant Nicotiana benthamiana. We transformed P. kernoviae to express green fluorescent protein (GFP) and demonstrated that it forms haustoria within infected N. benthamiana cells. Haustoria were also formed in infected cells of natural hosts, Rhododendron ponticum and European beech (Fagus sylvatica). We analysed the transcriptome of P. kernoviae in cultured mycelia, spores, and during infection of N. benthamiana, and detected 12,559 transcripts. Of these, 1,052 were predicted to encode secreted proteins, some of which may function as effectors to facilitate disease development. From these, we identified 87 expressed candidate RXLR (Arg-any amino acid-Leu-Arg) effectors. We transiently expressed 12 of these as GFP fusions in N. benthamiana leaves and demonstrated that nine significantly enhanced P. kernoviae disease progression and diversely localized to the cytoplasm, nucleus, nucleolus, and plasma membrane. Our results show that N. benthamiana can be used as a model host plant for studying this tree pathogen, and that the interaction likely involves suppression of host immune responses by RXLR effectors. These results establish a platform to expand the understanding of Phytophthora tree diseases.
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Affiliation(s)
- Shumei Wang
- Division of Plant SciencesUniversity of DundeeJames Hutton InstituteInvergowrie, DundeeUK
| | - Ramesh R. Vetukuri
- Department of Plant BreedingSwedish University of Agricultural SciencesAlnarpSweden
| | - Sandeep K. Kushwaha
- Department of Plant BreedingSwedish University of Agricultural SciencesAlnarpSweden
- National Institute of Animal BiotechnologyHyderabadIndia
| | - Pete E. Hedley
- Cell and Molecular SciencesJames Hutton InstituteInvergowrie, DundeeUK
| | - Jenny Morris
- Cell and Molecular SciencesJames Hutton InstituteInvergowrie, DundeeUK
| | - David J. Studholme
- Biosciences, College of Life and Environmental SciencesUniversity of ExeterExeterUK
| | - Lydia R. J. Welsh
- Cell and Molecular SciencesJames Hutton InstituteInvergowrie, DundeeUK
| | - Petra C. Boevink
- Cell and Molecular SciencesJames Hutton InstituteInvergowrie, DundeeUK
| | - Paul R. J. Birch
- Division of Plant SciencesUniversity of DundeeJames Hutton InstituteInvergowrie, DundeeUK
- Cell and Molecular SciencesJames Hutton InstituteInvergowrie, DundeeUK
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14
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Cai Q, He B, Wang S, Fletcher S, Niu D, Mitter N, Birch PRJ, Jin H. Message in a Bubble: Shuttling Small RNAs and Proteins Between Cells and Interacting Organisms Using Extracellular Vesicles. Annu Rev Plant Biol 2021; 72:497-524. [PMID: 34143650 PMCID: PMC8369896 DOI: 10.1146/annurev-arplant-081720-010616] [Citation(s) in RCA: 67] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Communication between plant cells and interacting microorganisms requires the secretion and uptake of functional molecules to and from the extracellular environment and is essential for the survival of both plants and their pathogens. Extracellular vesicles (EVs) are lipid bilayer-enclosed spheres that deliver RNA, protein, and metabolite cargos from donor to recipient cells and participate in many cellular processes. Emerging evidencehas shown that both plant and microbial EVs play important roles in cross-kingdom molecular exchange between hosts and interacting microbes to modulate host immunity and pathogen virulence. Recent studies revealed that plant EVs function as a defense system by encasing and delivering small RNAs (sRNAs) into pathogens, thereby mediating cross-species and cross-kingdom RNA interference to silence virulence-related genes. This review focuses on the latest advances in our understanding of plant and microbial EVs and their roles in transporting regulatory molecules, especially sRNAs, between hosts and pathogens. EV biogenesis and secretion are also discussed, as EV function relies on these important processes.
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Affiliation(s)
- Qiang Cai
- Department of Microbiology and Plant Pathology and Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, California 92507, USA;
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Baoye He
- Department of Microbiology and Plant Pathology and Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, California 92507, USA;
| | - Shumei Wang
- Department of Microbiology and Plant Pathology and Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, California 92507, USA;
| | - Stephen Fletcher
- Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
| | - Dongdong Niu
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Neena Mitter
- Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
| | - Paul R J Birch
- Division of Plant Sciences, School of Life Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Hailing Jin
- Department of Microbiology and Plant Pathology and Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, California 92507, USA;
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15
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Boevink PC, Birch PRJ, Turnbull D, Whisson SC. Devastating intimacy: the cell biology of plant-Phytophthora interactions. New Phytol 2020; 228:445-458. [PMID: 32394464 PMCID: PMC7540312 DOI: 10.1111/nph.16650] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2020] [Accepted: 04/15/2020] [Indexed: 05/07/2023]
Abstract
An understanding of the cell biology underlying the burgeoning molecular genetic and genomic knowledge of oomycete pathogenicity is essential to gain the full context of how these pathogens cause disease on plants. An intense research focus on secreted Phytophthora effector proteins, especially those containing a conserved N-terminal RXLR motif, has meant that most cell biological studies into Phytophthora diseases have focussed on the effectors and their host target proteins. While these effector studies have provided novel insights into effector secretion and host defence mechanisms, there remain many unanswered questions about fundamental processes involved in spore biology, host penetration and haustorium formation and function.
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Affiliation(s)
- Petra C. Boevink
- Cell and Molecular SciencesJames Hutton InstituteErrol RoadInvergowrieDundeeDD2 5DAUK
| | - Paul R. J. Birch
- Cell and Molecular SciencesJames Hutton InstituteErrol RoadInvergowrieDundeeDD2 5DAUK
- Division of Plant SciencesUniversity of DundeeErrol RoadInvergowrieDundeeDD2 5DAUK
| | - Dionne Turnbull
- Division of Plant SciencesUniversity of DundeeErrol RoadInvergowrieDundeeDD2 5DAUK
| | - Stephen C. Whisson
- Cell and Molecular SciencesJames Hutton InstituteErrol RoadInvergowrieDundeeDD2 5DAUK
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16
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Ren Y, Armstrong M, Qi Y, McLellan H, Zhong C, Du B, Birch PRJ, Tian Z. Phytophthora infestans RXLR Effectors Target Parallel Steps in an Immune Signal Transduction Pathway. Plant Physiol 2019; 180:2227-2239. [PMID: 31217198 PMCID: PMC6670088 DOI: 10.1104/pp.18.00625] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2018] [Accepted: 06/12/2019] [Indexed: 05/12/2023]
Abstract
The potato (Solanum tuberosum) blight pathogen Phytophthora infestans delivers Arg-X-Leu-Arg (RXLR) effector proteins into host cells to subvert plant immune responses and promote colonization. We show that transient expression and stable transgenic expression of the RXLR effector Pi22926 in Nicotiana benthamiana promotes leaf colonization by P. infestans. Pi22926 suppresses cell death triggered by coexpression of the Cladosporium fulvum avirulence protein Avr4 and the tomato (Solanum lycopersicum) resistance protein Cf4. Pi22926 interacts with a potato mitogen-activated protein kinase kinase kinase, StMAP3Kβ2, in the nucleoplasm. Virus-induced gene silencing (VIGS) of the ortholog NbMAP3Kβ2 in N. benthamiana enhances P. infestans colonization and attenuates Cf4/Avr4-induced cell death, indicating that this host protein is a positive regulator of immunity. Cell death induced by Cf4/Avr4 is dependent on NbMAP3Kε and NbMAP3Kβ2, indicating that these MAP3Ks function in the same signaling pathway. VIGS of NbMAP3Kβ2 does not compromise cell death triggered by overexpression of MAP3Kε. Similarly, VIGS of NbMAP3Kε does not attenuate cell death triggered by MAP3Kβ2, demonstrating that these MAP3K proteins function in parallel. In agreement, Pi22926 or another RXLR effector, PexRD2, only suppresses cell death triggered by expression of StMAP3Kβ2 or StMAP3Kε, respectively. Our data reveal that two P. infestans effectors, PexRD2 and Pi22926, promote P. infestans colonization by targeting MAP3K proteins that act in parallel in the same signal transduction pathway.
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Affiliation(s)
- Yajuan Ren
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University (HZAU), Wuhan 430070, People's Republic of China
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
| | - Miles Armstrong
- Division of Plant Sciences, School of Life Science, University of Dundee (at James Hutton Institute), Invergowrie, Dundee DD2 5DA, United Kingdom
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Yetong Qi
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University (HZAU), Wuhan 430070, People's Republic of China
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
| | | | - Cheng Zhong
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University (HZAU), Wuhan 430070, People's Republic of China
| | - Bowen Du
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University (HZAU), Wuhan 430070, People's Republic of China
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
| | - Paul R J Birch
- Division of Plant Sciences, School of Life Science, University of Dundee (at James Hutton Institute), Invergowrie, Dundee DD2 5DA, United Kingdom
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Zhendong Tian
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University (HZAU), Wuhan 430070, People's Republic of China
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
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17
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Turnbull D, Wang H, Breen S, Malec M, Naqvi S, Yang L, Welsh L, Hemsley P, Zhendong T, Brunner F, Gilroy EM, Birch PRJ. AVR2 Targets BSL Family Members, Which Act as Susceptibility Factors to Suppress Host Immunity. Plant Physiol 2019; 180:571-581. [PMID: 30782963 PMCID: PMC6501069 DOI: 10.1104/pp.18.01143] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2018] [Accepted: 02/06/2019] [Indexed: 05/05/2023]
Abstract
To be successful plant pathogens, microbes use "effector proteins" to manipulate host functions to their benefit. Identifying host targets of effector proteins and characterizing their role in the infection process allow us to better understand plant-pathogen interactions and the plant immune system. Yeast two-hybrid analysis and coimmunoprecipitation were used to demonstrate that the Phytophthora infestans effector AVIRULENCE 2 (PiAVR2) interacts with all three BRI1-SUPPRESSOR1-like (BSL) family members from potato (Solanum tuberosum). Transient expression of BSL1, BSL2, and BSL3 enhanced P. infestans leaf infection. BSL1 and BSL3 suppressed INFESTIN 1 elicitin-triggered cell death, showing that they negatively regulate immunity. Virus-induced gene silencing studies revealed that BSL2 and BSL3 are required for BSL1 stability and show that basal levels of immunity are increased in BSL-silenced plants. Immune suppression by BSL family members is dependent on the brassinosteroid-responsive host transcription factor CIB1/HBI1-like 1. The P. infestans effector PiAVR2 targets all three BSL family members in the crop plant S. tuberosum These phosphatases, known for their role in growth-promoting brassinosteroid signaling, all support P. infestans virulence and thus can be regarded as susceptibility factors in late blight infection.
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Affiliation(s)
- Dionne Turnbull
- Division of Plant Science, School of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Haixia Wang
- Division of Plant Science, School of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, United Kingdom
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Susan Breen
- Division of Plant Science, School of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, United Kingdom
- Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Marek Malec
- Department of Biochemistry, Centre for Plant Molecular Biology, Eberhard Karls University, Auf der Morgenstelle 32, D-72076 Tübingen, Germany
| | - Shaista Naqvi
- Division of Plant Science, School of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Lina Yang
- Division of Plant Science, School of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, United Kingdom
- Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y.)
| | - Lydia Welsh
- Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Piers Hemsley
- Division of Plant Science, School of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, United Kingdom
- Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Tian Zhendong
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Frederic Brunner
- Department of Biochemistry, Centre for Plant Molecular Biology, Eberhard Karls University, Auf der Morgenstelle 32, D-72076 Tübingen, Germany
| | - Eleanor M Gilroy
- Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Paul R J Birch
- Division of Plant Science, School of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, United Kingdom
- Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
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18
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He Q, McLellan H, Hughes RK, Boevink PC, Armstrong M, Lu Y, Banfield MJ, Tian Z, Birch PRJ. Phytophthora infestans effector SFI3 targets potato UBK to suppress early immune transcriptional responses. New Phytol 2019; 222:438-454. [PMID: 30536576 DOI: 10.1111/nph.15635] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2018] [Accepted: 11/19/2018] [Indexed: 05/27/2023]
Abstract
The potato blight agent Phytophthora infestans secretes a range of RXLR effectors to promote disease. Recent evidence indicates that some effectors suppress early pattern-triggered immunity (PTI) following perception of microbe-associated molecular patterns (MAMPs). Phytophthora infestans effector PiSFI3/Pi06087/PexRD16 has been previously shown to suppress MAMP-triggered pFRK1-Luciferase reporter gene activity. How PiSFI3 suppresses immunity is unknown. We employed yeast-two-hybrid (Y2H) assays, co-immunoprecipitation, transcriptional silencing by RNA interference and virus-induced gene silencing (VIGS), and X-ray crystallography for structure-guided mutagenesis, to investigate the function of PiSFI3 in targeting a plant U-box-kinase protein (StUBK) to suppress immunity. We discovered that PiSFI3 is active in the host nucleus and interacts in yeast and in planta with StUBK. UBK is a positive regulator of specific PTI pathways in both potato and Nicotiana benthamiana. Importantly, it contributes to early transcriptional responses that are suppressed by PiSFI3. PiSFI3 forms an unusual trans-homodimer. Mutation to disrupt dimerization prevents nucleolar localisation of PiSFI3 and attenuates both its interaction with StUBK and its ability to enhance P. infestans leaf colonisation. PiSFI3 is a 'WY-domain' RXLR effector that forms a novel trans-homodimer which is required for its ability to suppress PTI via interaction with the U-box-kinase protein StUBK.
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Affiliation(s)
- Qin He
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, Hubei, 430070, China
- Division of Plant Science, School of Life Science, University of Dundee (at JHI), Invergowrie, Dundee, DD2 5DA, UK
- Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Hazel McLellan
- Division of Plant Science, School of Life Science, University of Dundee (at JHI), Invergowrie, Dundee, DD2 5DA, UK
| | - Richard K Hughes
- Department of Biological Chemistry, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK
| | - Petra C Boevink
- Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Miles Armstrong
- Division of Plant Science, School of Life Science, University of Dundee (at JHI), Invergowrie, Dundee, DD2 5DA, UK
- Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Yuan Lu
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, Hubei, 430070, China
| | - Mark J Banfield
- Department of Biological Chemistry, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK
| | - Zhendong Tian
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, Hubei, 430070, China
| | - Paul R J Birch
- Division of Plant Science, School of Life Science, University of Dundee (at JHI), Invergowrie, Dundee, DD2 5DA, UK
- Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
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19
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Wang H, He H, Qi Y, McLellan H, Tian Z, Birch PRJ, Tian Z. The oomycete microbe-associated molecular pattern Pep-13 triggers SERK3/BAK1-independent plant immunity. Plant Cell Rep 2019; 38:173-182. [PMID: 30488097 DOI: 10.1007/s00299-018-2359-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Accepted: 11/22/2018] [Indexed: 05/27/2023]
Abstract
KEY MESSAGE Oomycetes MAMP Pep-13 can trigger SERK3/BAK1-independent PTI. Silencing of SERK3/BAK1 in solanaceous plants resulted in reduced expression of brassinosteroid marker genes and enhanced PTI transcriptional responses to Pep-13 treatment. To prevent disease, pattern recognition receptors (PRRs) are responsible for detecting microbe-associated molecular patterns (MAMPs) to switch on plant innate immunity. SOMATIC EMBROYOGENESIS KINASE 3 (SERK3)/BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED KINASE 1 (BAK1) is a well-characterized receptor-like kinase (RLK) that serves as a pivotal co-receptor with PRRs to activate immunity following recognition of MAMPs including flg22, EF-Tu, INF1 and XEG1. However, the requirement for SERK3/BAK1 in many pattern-triggered immune (PTI) signaling pathways is not yet known. Pep-13 is an oomycete MAMP that consists of a highly conserved motif (an oligopeptide of 13 amino acids) shared in Phytophthora transglutaminases. Quantitative RT-PCR analysis reveals that the transcripts of three PTI marker genes (WRKY7, WRKY8 and ACRE31) rapidly accumulate in response to three different MAMPs: flg22, chitin and Pep-13. Whereas silencing of SERK3/BAK1 in Nicotiana benthamiana or potato compromised transcript accumulation in response to flg22, it did not attenuate WRKY7, WRKY8 and ACRE31 up-regulation in response to chitin or Pep-13. This indicates that Pep-13 triggers immunity in a SERK3/BAK1-independent manner, similar to chitin. Surprisingly, silencing of SERK3/BAK1 led to significantly increased accumulation of PTI marker gene transcripts following Pep-13 or chitin treatment, compared to controls. This was accompanied by reduced expression of brassinosteroid (BR) marker genes StSTDH, StEXP8 and StCAB50 and StCHL1, which is a negative regulator of PTI, supporting previous reports that SERK3/BAK1-dependent BR signaling attenuates plant immunity. We provide Pep-13 as an alternative to chitin as a trigger of SERK3/BAK1-independent immunity.
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Affiliation(s)
- Haixia Wang
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University (HZAU), Wuhan, 430070, People's Republic of China
- Division of Plant Sciences, School of Life Science, University of Dundee (at James Hutton Institute), Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Huan He
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University (HZAU), Wuhan, 430070, People's Republic of China
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China
| | - Yetong Qi
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University (HZAU), Wuhan, 430070, People's Republic of China
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China
| | - Hazel McLellan
- Division of Plant Sciences, School of Life Science, University of Dundee (at James Hutton Institute), Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Zhejuan Tian
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University (HZAU), Wuhan, 430070, People's Republic of China
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China
| | - Paul R J Birch
- Division of Plant Sciences, School of Life Science, University of Dundee (at James Hutton Institute), Errol Road, Invergowrie, Dundee, DD2 5DA, UK
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Zhendong Tian
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University (HZAU), Wuhan, 430070, People's Republic of China.
- Key Laboratory of Horticultural Plant Biology (HZAU), Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China.
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20
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Thilliez GJA, Armstrong MR, Lim T, Baker K, Jouet A, Ward B, van Oosterhout C, Jones JDG, Huitema E, Birch PRJ, Hein I. Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes. New Phytol 2019; 221:1634-1648. [PMID: 30288743 PMCID: PMC6492278 DOI: 10.1111/nph.15441] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2018] [Accepted: 08/13/2018] [Indexed: 05/11/2023]
Abstract
The oomycete pathogens Phytophthora infestans and P. capsici cause significant crop losses world-wide, threatening food security. In each case, pathogenicity factors, called RXLR effectors, contribute to virulence. Some RXLRs are perceived by resistance proteins to trigger host immunity, but our understanding of the demographic processes and adaptive evolution of pathogen virulence remains poor. Here, we describe PenSeq, a highly efficient enrichment sequencing approach for genes encoding pathogenicity determinants which, as shown for the infamous potato blight pathogen Phytophthora infestans, make up < 1% of the entire genome. PenSeq facilitates the characterization of allelic diversity in pathogen effectors, enabling evolutionary and population genomic analyses of Phytophthora species. Furthermore, PenSeq enables the massively parallel identification of presence/absence variations and sequence polymorphisms in key pathogen genes, which is a prerequisite for the efficient deployment of host resistance genes. PenSeq represents a cost-effective alternative to whole-genome sequencing and addresses crucial limitations of current plant pathogen population studies, which are often based on selectively neutral markers and consequently have limited utility in the analysis of adaptive evolution. The approach can be adapted to diverse microbes and pathogens.
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Affiliation(s)
- Gaetan J. A. Thilliez
- Cell and Molecular SciencesThe James Hutton InstituteErrol Road, InvergowrieDundeeDD2 5DAUK
- Division of Plant Sciences at the James Hutton InstituteSchool of Life SciencesUniversity of DundeeDundeeDD2 5DAUK
| | - Miles R. Armstrong
- Cell and Molecular SciencesThe James Hutton InstituteErrol Road, InvergowrieDundeeDD2 5DAUK
| | - Tze‐Yin Lim
- Information and Computational SciencesThe James Hutton InstituteDundeeDD2 5DAUK
| | - Katie Baker
- Information and Computational SciencesThe James Hutton InstituteDundeeDD2 5DAUK
| | - Agathe Jouet
- The Sainsbury LaboratoryNorwich Research ParkNorwichNR4 7GJUK
| | - Ben Ward
- The Earlham InstituteNorwich Research ParkNorwichNR4 7UHUK
| | | | | | - Edgar Huitema
- Division of Plant Sciences at the James Hutton InstituteSchool of Life SciencesUniversity of DundeeDundeeDD2 5DAUK
| | - Paul R. J. Birch
- Cell and Molecular SciencesThe James Hutton InstituteErrol Road, InvergowrieDundeeDD2 5DAUK
- Division of Plant Sciences at the James Hutton InstituteSchool of Life SciencesUniversity of DundeeDundeeDD2 5DAUK
| | - Ingo Hein
- Cell and Molecular SciencesThe James Hutton InstituteErrol Road, InvergowrieDundeeDD2 5DAUK
- Division of Plant Sciences at the James Hutton InstituteSchool of Life SciencesUniversity of DundeeDundeeDD2 5DAUK
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21
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Wang S, McLellan H, Bukharova T, He Q, Murphy F, Shi J, Sun S, van Weymers P, Ren Y, Thilliez G, Wang H, Chen X, Engelhardt S, Vleeshouwers V, Gilroy EM, Whisson SC, Hein I, Wang X, Tian Z, Birch PRJ, Boevink PC. Phytophthora infestans RXLR effectors act in concert at diverse subcellular locations to enhance host colonization. J Exp Bot 2019; 70:343-356. [PMID: 30329083 PMCID: PMC6305197 DOI: 10.1093/jxb/ery360] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2018] [Accepted: 10/10/2018] [Indexed: 05/23/2023]
Abstract
Oomycetes such as the potato blight pathogen Phytophthora infestans deliver RXLR effectors into plant cells to manipulate host processes and promote disease. Knowledge of where they localize inside host cells is important in understanding their function. Fifty-two P. infestans RXLR effectors (PiRXLRs) up-regulated during early stages of infection were expressed as fluorescent protein (FP) fusions inside cells of the model host Nicotiana benthamiana. FP-PiRXLR fusions were predominantly nucleo-cytoplasmic, nuclear, or plasma membrane-associated. Some also localized to the endoplasmic reticulum, mitochondria, peroxisomes, or microtubules, suggesting diverse sites of subcellular activity. Seven of the 25 PiRXLRs examined during infection accumulated at sites of haustorium penetration, probably due to co-localization with host target processes; Pi16663 (Avr1), for example, localized to Sec5-associated mobile bodies which showed perihaustorial accumulation. Forty-five FP-RXLR fusions enhanced pathogen leaf colonization when expressed in Nicotiana benthamiana, revealing that their presence was beneficial to infection. Co-expression of PiRXLRs that target and suppress different immune pathways resulted in an additive enhancement of colonization, indicating the potential to study effector combinations using transient expression assays. We provide a broad platform of high confidence P. infestans effector candidates from which to investigate the mechanisms, singly and in combination, by which this pathogen causes disease.
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Affiliation(s)
- Shumei Wang
- Division of Plant Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee, UK
| | - Hazel McLellan
- Division of Plant Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee, UK
| | - Tatyana Bukharova
- Division of Plant Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee, UK
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, UK
| | - Qin He
- Division of Plant Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee, UK
| | - Fraser Murphy
- Division of Plant Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee, UK
| | - Jiayang Shi
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, China
| | - Shaohui Sun
- Heilongjiang Bayi Agricultural University, Daqing, China
- Virus-free Seedling Research Institute of Heilongjiang Academy of Agricultural Sciences, Harbin, China
| | - Pauline van Weymers
- Division of Plant Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee, UK
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, UK
| | - Yajuan Ren
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, China
| | - Gaetan Thilliez
- Division of Plant Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee, UK
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, UK
| | - Haixia Wang
- Division of Plant Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee, UK
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, China
| | - Xinwei Chen
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, UK
| | - Stefan Engelhardt
- Division of Plant Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee, UK
- School of Life Sciences Weihenstephan, Technische Universität München, Freising, Germany
| | | | - Eleanor M Gilroy
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, UK
| | - Stephen C Whisson
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, UK
| | - Ingo Hein
- Division of Plant Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee, UK
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, UK
| | - Xiaodan Wang
- Virus-free Seedling Research Institute of Heilongjiang Academy of Agricultural Sciences, Harbin, China
| | - Zhendong Tian
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, China
| | - Paul R J Birch
- Division of Plant Science, University of Dundee at James Hutton Institute, Invergowrie, Dundee, UK
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, UK
| | - Petra C Boevink
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, UK
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22
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Wang H, Chen Y, Wu X, Long Z, Sun C, Wang H, Wang S, Birch PRJ, Tian Z. A potato STRUBBELIG-RECEPTOR FAMILY member, StLRPK1, associates with StSERK3A/BAK1 and activates immunity. J Exp Bot 2018; 69:5573-5586. [PMID: 30137408 PMCID: PMC6255708 DOI: 10.1093/jxb/ery310] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Plant STRUBBELIG (SUB)-RECEPTOR FAMILY (SRF) genes encode putative leucine-rich repeat transmembrane receptor-like kinases. SRFs have been reported to play essential roles in tissue morphogenesis in many plant organs. Here, we show that a potato SRF family gene, StLRPK1, is involved in plant immunity. StLRPK1 is located at the cell plasma membrane and is strongly induced by culture filtrate from in vitro growth of the late blight pathogen Phytophthora infestans. Overexpression of StLRPK1 in stable transgenic potato or ectopic expression in Nicotiana benthamiana plants enhances P. infestans disease resistance, whereas RNA interference (RNAi) of StLRPK1 in potato decreases disease resistance. We found that StLRPK1 constitutively interacts with a pivotal co-receptor, SERK3A/BAK1, which plays a central role in plant immunity. Virus-induced gene silencing of SERK3A/BAK1 in N. benthamiana lines expressing StLRPK1 attenuated P. infestans resistance, indicating that SERK3A/BAK1 is required for StLRPK1-mediated immunity. Finally, we show that StLRPK1-triggered late blight resistance depends on the mitogen-activated protein kinase kinase MEK2 and mitogen-activated protein kinase WIPK. We propose a model in which StLRPK1 associates with SERK3A/BAK1 to positively regulate plant immunity to P. infestans through a MAPK cascade. These data provide new insights into our understanding of SRF function in plant immunity.
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Affiliation(s)
- Haixia Wang
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, China
| | - Yanlin Chen
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, China
| | - Xingtong Wu
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, China
| | - Zongshang Long
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, China
| | - Chunlian Sun
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, China
| | - Hairong Wang
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, China
| | - Shumei Wang
- Division of Plant Sciences, School of Life Science, University of Dundee, James Hutton Institute, Errol Road, Invergowrie, Dundee, UK
| | - Paul R J Birch
- Division of Plant Sciences, School of Life Science, University of Dundee, James Hutton Institute, Errol Road, Invergowrie, Dundee, UK
| | - Zhendong Tian
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, China
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23
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Zheng X, Wagener N, McLellan H, Boevink PC, Hua C, Birch PRJ, Brunner F. Phytophthora infestans RXLR effector SFI5 requires association with calmodulin for PTI/MTI suppressing activity. New Phytol 2018; 219:1433-1446. [PMID: 29932222 PMCID: PMC6099356 DOI: 10.1111/nph.15250] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2018] [Accepted: 05/03/2018] [Indexed: 05/04/2023]
Abstract
Pathogens secrete effector proteins to interfere with plant innate immunity, in which Ca2+ /calmodulin (CaM) signalling plays key roles. Thus far, few effectors have been identified that directly interact with CaM for defence suppression. Here, we report that SFI5, an RXLR effector from Phytophthora infestans, suppresses microbe-associated molecular pattern (MAMP)-triggered immunity (MTI) by interacting with host CaMs. We predicted the CaM-binding site in SFI5 using in silico analysis. The interaction between SFI5 and CaM was tested by both in vitro and in vivo assays. MTI suppression by SFI5 and truncated variants were performed in a tomato protoplast system. We found that both the predicted CaM-binding site and the full-length SFI5 protein interact with CaM in the presence of Ca2+ . MTI responses, such as FRK1 upregulation, reactive oxygen species accumulation, and mitogen-activated protein kinase activation were suppressed by truncated SFI5 proteins containing the C-terminal CaM-binding site but not by those without it. The plasma membrane localization of SFI5 and its ability to enhance infection were also perturbed by loss of the CaM-binding site. We conclude that CaM-binding is required for localization and activity of SFI5. We propose that SFI5 suppresses plant immunity by interfering with immune signalling components after activation by CaMs.
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Affiliation(s)
- Xiangzi Zheng
- Department of BiochemistryCentre for Plant Molecular BiologyEberhard Karls UniversityAuf der Morgenstelle 32D‐72076TübingenGermany
- Center for Molecular Cell and Systems BiologyCollege of Life SciencesFujian Agriculture and Forestry UniversityFuzhou350002China
| | - Nadine Wagener
- Department of BiochemistryCentre for Plant Molecular BiologyEberhard Karls UniversityAuf der Morgenstelle 32D‐72076TübingenGermany
| | - Hazel McLellan
- Division of Plant SciencesUniversity of Dundee (at James Hutton Institute)Errol RdInvergowrie, DundeeDD2 5DAUK
| | - Petra C. Boevink
- Cell and Molecular SciencesThe James Hutton InstituteErrol RdInvergowrie, DundeeDD2 5DAUK
| | - Chenlei Hua
- Department of BiochemistryCentre for Plant Molecular BiologyEberhard Karls UniversityAuf der Morgenstelle 32D‐72076TübingenGermany
| | - Paul R. J. Birch
- Division of Plant SciencesUniversity of Dundee (at James Hutton Institute)Errol RdInvergowrie, DundeeDD2 5DAUK
- Cell and Molecular SciencesThe James Hutton InstituteErrol RdInvergowrie, DundeeDD2 5DAUK
| | - Frédéric Brunner
- Department of BiochemistryCentre for Plant Molecular BiologyEberhard Karls UniversityAuf der Morgenstelle 32D‐72076TübingenGermany
- PlantResponse Biotech, S.L.Centre for Plant Biotechnology and Genomics (CBGP)Campus de Montegancedo28223Pozuelo de Alarcón, MadridSpain
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24
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He Q, Naqvi S, McLellan H, Boevink PC, Champouret N, Hein I, Birch PRJ. Plant pathogen effector utilizes host susceptibility factor NRL1 to degrade the immune regulator SWAP70. Proc Natl Acad Sci U S A 2018; 115:E7834-E7843. [PMID: 30049706 PMCID: PMC6099861 DOI: 10.1073/pnas.1808585115] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Abstract
Plant pathogens deliver effectors into plant cells to suppress immunity. Whereas many effectors inactivate positive immune regulators, other effectors associate with negative regulators of immunity: so-called susceptibility (S) factors. Little is known about how pathogens exploit S factors to suppress immunity. Phytophthora infestans RXLR effector Pi02860 interacts with host protein NRL1, which is an S factor whose activity suppresses INF1-triggered cell death (ICD) and is required for late blight disease. We show that NRL1 interacts in yeast and in planta with a guanine nucleotide exchange factor called SWAP70. SWAP70 associates with endosomes and is a positive regulator of immunity. Virus-induced gene silencing of SWAP70 in Nicotiana benthamiana enhances P. infestans colonization and compromises ICD. In contrast, transient overexpression of SWAP70 reduces P. infestans infection and accelerates ICD. Expression of Pi02860 and NRL1, singly or in combination, results in proteasome-mediated degradation of SWAP70. Degradation of SWAP70 is prevented by silencing NRL1, or by mutation of Pi02860 to abolish its interaction with NRL1. NRL1 is a BTB-domain protein predicted to form the substrate adaptor component of a CULLIN3 ubiquitin E3 ligase. A dimerization-deficient mutant, NRL1NQ, fails to interact with SWAP70 but maintains its interaction with Pi02860. NRL1NQ acts as a dominant-negative mutant, preventing SWAP70 degradation in the presence of effector Pi02860, and reducing P. infestans infection. Critically, Pi02860 enhances the association between NRL1 and SWAP70 to promote proteasome-mediated degradation of the latter and, thus, suppress immunity. Preventing degradation of SWAP70 represents a strategy to combat late blight disease.
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Affiliation(s)
- Qin He
- Division of Plant Science, James Hutton Institute, University of Dundee, Invergowrie, DD2 5DA Dundee, United Kingdom
| | - Shaista Naqvi
- Division of Plant Science, James Hutton Institute, University of Dundee, Invergowrie, DD2 5DA Dundee, United Kingdom
| | - Hazel McLellan
- Division of Plant Science, James Hutton Institute, University of Dundee, Invergowrie, DD2 5DA Dundee, United Kingdom
| | - Petra C Boevink
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, DD2 5DA Dundee, United Kingdom
| | | | - Ingo Hein
- Division of Plant Science, James Hutton Institute, University of Dundee, Invergowrie, DD2 5DA Dundee, United Kingdom
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, DD2 5DA Dundee, United Kingdom
| | - Paul R J Birch
- Division of Plant Science, James Hutton Institute, University of Dundee, Invergowrie, DD2 5DA Dundee, United Kingdom;
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, DD2 5DA Dundee, United Kingdom
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25
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Murphy F, He Q, Armstrong M, Giuliani LM, Boevink PC, Zhang W, Tian Z, Birch PRJ, Gilroy EM. The Potato MAP3K StVIK Is Required for the Phytophthora infestans RXLR Effector Pi17316 to Promote Disease. Plant Physiol 2018; 177:398-410. [PMID: 29588335 PMCID: PMC5933144 DOI: 10.1104/pp.18.00028] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2018] [Accepted: 03/04/2018] [Indexed: 05/19/2023]
Abstract
Plant pathogens deliver effectors to manipulate processes in their hosts, creating a suitable environment for invasion and proliferation. Yet, little is known about the host proteins that are targeted by effectors from filamentous pathogens. Here, we show that stable transgenic expression in potato (Solanum tuberosum) and transient expression in Nicotiana benthamiana of the arginine-any amino acid-leucine-arginine effector Pi17316 enhances leaf colonization by the late blight pathogen Phytophthora infestans Expression of Pi17316 also attenuates cell death triggered by the pathogen-associated molecular pattern Infestin1 (INF1), indicating that the effector suppresses pattern-triggered immunity. However, this effector does not attenuate cell death triggered by a range of resistance proteins, showing that it specifically suppresses INF1-triggered cell death (ICD). In yeast two-hybrid assays, Pi17316 interacts directly with the potato ortholog of VASCULAR HIGHWAY1-interacting kinase (StVIK), encoding a predicted MEK kinase (MAP3K). Interaction in planta was confirmed by coimmunoprecipitation and occurs at the plant plasma membrane. Virus-induced gene silencing of VIK in N. benthamiana attenuated P. infestans colonization, whereas transient overexpression of StVIK enhanced colonization, indicating that this host protein acts as a susceptibility factor. Moreover, VIK overexpression specifically attenuated ICD, indicating that it is a negative regulator of immunity. The abilities of Pi17316 to enhance P. infestans colonization or suppress ICD were compromised significantly in NbVIK-silenced plants, demonstrating that the effector activity of Pi17316 is mediated by this MAP3K. Thus, StVIK is exploited by P. infestans as a susceptibility factor to promote late blight disease.
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Affiliation(s)
- Fraser Murphy
- Division of Plant Science, University of Dundee (at James Hutton Institute), Invergowrie, Dundee DD2 5DA, United Kingdom
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Qin He
- Division of Plant Science, University of Dundee (at James Hutton Institute), Invergowrie, Dundee DD2 5DA, United Kingdom
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, China
| | - Miles Armstrong
- Division of Plant Science, University of Dundee (at James Hutton Institute), Invergowrie, Dundee DD2 5DA, United Kingdom
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Licida M Giuliani
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Petra C Boevink
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Wei Zhang
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, China
| | - Zhendong Tian
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, China
- Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture, Huazhong Agricultural University, Wuhan 430070, China
| | - Paul R J Birch
- Division of Plant Science, University of Dundee (at James Hutton Institute), Invergowrie, Dundee DD2 5DA, United Kingdom
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Eleanor M Gilroy
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
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26
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Thordal‐Christensen H, Birch PRJ, Spanu PD, Panstruga R. Why did filamentous plant pathogens evolve the potential to secrete hundreds of effectors to enable disease? Mol Plant Pathol 2018; 19:781-785. [PMID: 29536647 PMCID: PMC6638121 DOI: 10.1111/mpp.12649] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2017] [Revised: 11/28/2017] [Accepted: 11/29/2017] [Indexed: 05/22/2023]
Affiliation(s)
- Hans Thordal‐Christensen
- Department of Plant and Environmental Sciences, Copenhagen Plant Science CentreUniversity of Copenhagen, 1871 Frederiksberg CDenmark
| | - Paul R. J. Birch
- Division of Plant ScienceUniversity of Dundee (at James Hutton Institute), InvergowrieDundee DD2 5DAUK
| | - Pietro D. Spanu
- Department of Life SciencesImperial College LondonLondon SW7 2AZUK
| | - Ralph Panstruga
- Institute for Biology I, Unit of Plant Molecular Cell Biology, RWTH Aachen University52056 AachenGermany
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Lilley CJ, Maqbool A, Wu D, Yusup HB, Jones LM, Birch PRJ, Banfield MJ, Urwin PE, Eves-van den Akker S. Effector gene birth in plant parasitic nematodes: Neofunctionalization of a housekeeping glutathione synthetase gene. PLoS Genet 2018; 14:e1007310. [PMID: 29641602 PMCID: PMC5919673 DOI: 10.1371/journal.pgen.1007310] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2017] [Revised: 04/26/2018] [Accepted: 03/16/2018] [Indexed: 11/24/2022] Open
Abstract
Plant pathogens and parasites are a major threat to global food security. Plant parasitism has arisen four times independently within the phylum Nematoda, resulting in at least one parasite of every major food crop in the world. Some species within the most economically important order (Tylenchida) secrete proteins termed effectors into their host during infection to re-programme host development and immunity. The precise detail of how nematodes evolve new effectors is not clear. Here we reconstruct the evolutionary history of a novel effector gene family. We show that during the evolution of plant parasitism in the Tylenchida, the housekeeping glutathione synthetase (GS) gene was extensively replicated. New GS paralogues acquired multiple dorsal gland promoter elements, altered spatial expression to the secretory dorsal gland, altered temporal expression to primarily parasitic stages, and gained a signal peptide for secretion. The gene products are delivered into the host plant cell during infection, giving rise to "GS-like effectors". Remarkably, by solving the structure of GS-like effectors we show that during this process they have also diversified in biochemical activity, and likely represent the founding members of a novel class of GS-like enzyme. Our results demonstrate the re-purposing of an endogenous housekeeping gene to form a family of effectors with modified functions. We anticipate that our discovery will be a blueprint to understand the evolution of other plant-parasitic nematode effectors, and the foundation to uncover a novel enzymatic function.
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Affiliation(s)
- Catherine J. Lilley
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
| | - Abbas Maqbool
- Dept. of Biological Chemistry, John Innes Centre, Norwich Research Park, Norwich, United Kingdom
| | - Duqing Wu
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
| | - Hazijah B. Yusup
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
| | - Laura M. Jones
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
| | - Paul R. J. Birch
- Cell and Molecular Sciences Group, Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
- School of Life Sciences, University of Dundee, Dundee, United Kingdom
| | - Mark J. Banfield
- Dept. of Biological Chemistry, John Innes Centre, Norwich Research Park, Norwich, United Kingdom
| | - Peter E. Urwin
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
| | - Sebastian Eves-van den Akker
- Dept. of Biological Chemistry, John Innes Centre, Norwich Research Park, Norwich, United Kingdom
- School of Life Sciences, University of Dundee, Dundee, United Kingdom
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28
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Wang S, Boevink PC, Welsh L, Zhang R, Whisson SC, Birch PRJ. Delivery of cytoplasmic and apoplastic effectors from Phytophthora infestans haustoria by distinct secretion pathways. New Phytol 2017; 216:205-215. [PMID: 28758684 PMCID: PMC5601276 DOI: 10.1111/nph.14696] [Citation(s) in RCA: 95] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2017] [Accepted: 06/05/2017] [Indexed: 05/17/2023]
Abstract
The potato blight pathogen Phytophthora infestans secretes effector proteins that are delivered inside (cytoplasmic) or can act outside (apoplastic) plant cells to neutralize host immunity. Little is known about how and where effectors are secreted during infection, yet such knowledge is essential to understand and combat crop disease. We used transient Agrobacterium tumefaciens-mediated in planta expression, transformation of P. infestans with fluorescent protein fusions and confocal microscopy to investigate delivery of effectors to plant cells during infection. The cytoplasmic effector Pi04314, expressed as a monomeric red fluorescent protein (mRFP) fusion protein with a signal peptide to secrete it from plant cells, did not passively re-enter the cells upon secretion. However, Pi04314-mRFP expressed in P. infestans was translocated from haustoria, which form intimate interactions with plant cells, to accumulate at its sites of action in the host nucleus. The well-characterized apoplastic effector EPIC1, a cysteine protease inhibitor, was also secreted from haustoria. EPIC1 secretion was inhibited by brefeldin A (BFA), demonstrating that it is delivered by conventional Golgi-mediated secretion. By contrast, Pi04314 secretion was insensitive to BFA treatment, indicating that the cytoplasmic effector follows an alternative route for delivery into plant cells. Phytophthora infestans haustoria are thus sites for delivery of both apoplastic and cytoplasmic effectors during infection, following distinct secretion pathways.
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Affiliation(s)
- Shumei Wang
- Division of Plant SciencesUniversity of Dundee (at JHI)Errol RoadInvergowrieDundeeDD2 5DAUK
| | - Petra C. Boevink
- Cell and Molecular SciencesJames Hutton InstituteErrol RoadInvergowrieDundeeDD2 5DAUK
| | - Lydia Welsh
- Cell and Molecular SciencesJames Hutton InstituteErrol RoadInvergowrieDundeeDD2 5DAUK
| | - Ruofang Zhang
- Potato Engineering and Technology Research Centre of Inner Mongolia UniversityWest College Road 235Hohhot010021China
| | - Stephen C. Whisson
- Cell and Molecular SciencesJames Hutton InstituteErrol RoadInvergowrieDundeeDD2 5DAUK
| | - Paul R. J. Birch
- Division of Plant SciencesUniversity of Dundee (at JHI)Errol RoadInvergowrieDundeeDD2 5DAUK
- Cell and Molecular SciencesJames Hutton InstituteErrol RoadInvergowrieDundeeDD2 5DAUK
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29
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Franco-Orozco B, Berepiki A, Ruiz O, Gamble L, Griffe LL, Wang S, Birch PRJ, Kanyuka K, Avrova A. A new proteinaceous pathogen-associated molecular pattern (PAMP) identified in Ascomycete fungi induces cell death in Solanaceae. New Phytol 2017; 214:1657-1672. [PMID: 28386988 DOI: 10.1111/nph.14542] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2016] [Accepted: 02/15/2017] [Indexed: 05/09/2023]
Abstract
Pathogen-associated molecular patterns (PAMPs) are detected by plant pattern recognition receptors (PRRs), which gives rise to PAMP-triggered immunity (PTI). We characterized a novel fungal PAMP, Cell Death Inducing 1 (RcCDI1), identified in the Rhynchosporium commune transcriptome sampled at an early stage of barley (Hordeum vulgare) infection. The ability of RcCDI1 and its homologues from different fungal species to induce cell death in Nicotiana benthamiana was tested following agroinfiltration or infiltration of recombinant proteins produced by Pichia pastoris. Virus-induced gene silencing (VIGS) and transient expression of Phytophthora infestans effectors PiAVR3a and PexRD2 were used to assess the involvement of known components of PTI in N. benthamiana responses to RcCDI1. RcCDI1 was highly upregulated early during barley colonization with R. commune. RcCDI1 and its homologues from different fungal species, including Zymoseptoria tritici, Magnaporthe oryzae and Neurospora crassa, exhibited PAMP activity, inducing cell death in Solanaceae but not in other families of dicots or monocots. RcCDI1-triggered cell death was shown to require N. benthamiana Brassinosteroid insensitive 1-Associated Kinase 1 (NbBAK1), N. benthamiana suppressor of BIR1-1 (NbSOBIR1) and N. benthamiana SGT1 (NbSGT1), but was not suppressed by PiAVR3a or PexRD2. We report the identification of a novel Ascomycete PAMP, RcCDI1, recognized by Solanaceae but not by monocots, which activates cell death through a pathway that is distinct from that triggered by the oomycete PAMP INF1.
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Affiliation(s)
- Barbara Franco-Orozco
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Adokiye Berepiki
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Olaya Ruiz
- Plant Biology and Crop Science Department, Rothamsted Research, Harpenden, AL5 2JQ, UK
| | - Louise Gamble
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Lucie L Griffe
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Shumei Wang
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Paul R J Birch
- Division of Plant Sciences, University of Dundee (at JHI), Invergowrie, Dundee, DD2 5DA, UK
| | - Kostya Kanyuka
- Plant Biology and Crop Science Department, Rothamsted Research, Harpenden, AL5 2JQ, UK
| | - Anna Avrova
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
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30
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Turnbull D, Yang L, Naqvi S, Breen S, Welsh L, Stephens J, Morris J, Boevink PC, Hedley PE, Zhan J, Birch PRJ, Gilroy EM. RXLR Effector AVR2 Up-Regulates a Brassinosteroid-Responsive bHLH Transcription Factor to Suppress Immunity. Plant Physiol 2017; 174:356-369. [PMID: 28270626 PMCID: PMC5411136 DOI: 10.1104/pp.16.01804] [Citation(s) in RCA: 51] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2016] [Accepted: 03/04/2017] [Indexed: 05/20/2023]
Abstract
An emerging area in plant research focuses on antagonism between regulatory systems governing growth and immunity. Such cross talk represents a point of vulnerability for pathogens to exploit. AVR2, an RXLR effector secreted by the potato blight pathogen Phytophthora infestans, interacts with potato BSL1, a putative phosphatase implicated in growth-promoting brassinosteroid (BR) hormone signaling. Transgenic potato (Solanum tuberosum) plants expressing the effector exhibit transcriptional and phenotypic hallmarks of overactive BR signaling and show enhanced susceptibility to P. infestans Microarray analysis was used to identify a set of BR-responsive marker genes in potato, all of which are constitutively expressed to BR-induced levels in AVR2 transgenic lines. One of these genes was a bHLH transcription factor, designated StCHL1, homologous to AtCIB1 and AtHBI1, which are known to facilitate antagonism between BR and immune responses. Transient expression of either AVR2 or CHL1 enhanced leaf colonization by P. infestans and compromised immune cell death activated by perception of the elicitin Infestin1 (INF1). Knockdown of CHL1 transcript using Virus-Induced Gene Silencing (VIGS) reduced colonization of P. infestans on Nicotiana benthamiana Moreover, the ability of AVR2 to suppress INF1-triggered cell death was attenuated in NbCHL1-silenced plants, indicating that NbCHL1 was important for this effector activity. Thus, AVR2 exploits cross talk between BR signaling and innate immunity in Solanum species, representing a novel, indirect mode of innate immune suppression by a filamentous pathogen effector.
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Affiliation(s)
- Dionne Turnbull
- Cell and Molecular Science, James Hutton Institute (D.T., L.Y., S.N., L.W., J.S., J.M., P.C.B., P.E.H., P.R.J.B., E.M.G.), and Division of Plant Science, School of Life Science (at The James Hutton institute) (D.T., L.Y., S.N., P.R.J.B.), University of Dundee Invergowrie, Dundee, DD2 5DA, United Kingdom
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.)
- James Hutton Ltd (at The James Hutton Institute), Plant Sciences Division, Research School of Biology, The Australian National University, Canberra 2601, Australia (S.B.); and
- Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.T., L.Y., S.N., L.W., P.C.B., P.E.H., P.R.J.B., E.M.G.)
| | - Lina Yang
- Cell and Molecular Science, James Hutton Institute (D.T., L.Y., S.N., L.W., J.S., J.M., P.C.B., P.E.H., P.R.J.B., E.M.G.), and Division of Plant Science, School of Life Science (at The James Hutton institute) (D.T., L.Y., S.N., P.R.J.B.), University of Dundee Invergowrie, Dundee, DD2 5DA, United Kingdom
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.)
- James Hutton Ltd (at The James Hutton Institute), Plant Sciences Division, Research School of Biology, The Australian National University, Canberra 2601, Australia (S.B.); and
- Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.T., L.Y., S.N., L.W., P.C.B., P.E.H., P.R.J.B., E.M.G.)
| | - Shaista Naqvi
- Cell and Molecular Science, James Hutton Institute (D.T., L.Y., S.N., L.W., J.S., J.M., P.C.B., P.E.H., P.R.J.B., E.M.G.), and Division of Plant Science, School of Life Science (at The James Hutton institute) (D.T., L.Y., S.N., P.R.J.B.), University of Dundee Invergowrie, Dundee, DD2 5DA, United Kingdom
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.)
- James Hutton Ltd (at The James Hutton Institute), Plant Sciences Division, Research School of Biology, The Australian National University, Canberra 2601, Australia (S.B.); and
- Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.T., L.Y., S.N., L.W., P.C.B., P.E.H., P.R.J.B., E.M.G.)
| | - Susan Breen
- Cell and Molecular Science, James Hutton Institute (D.T., L.Y., S.N., L.W., J.S., J.M., P.C.B., P.E.H., P.R.J.B., E.M.G.), and Division of Plant Science, School of Life Science (at The James Hutton institute) (D.T., L.Y., S.N., P.R.J.B.), University of Dundee Invergowrie, Dundee, DD2 5DA, United Kingdom
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.)
- James Hutton Ltd (at The James Hutton Institute), Plant Sciences Division, Research School of Biology, The Australian National University, Canberra 2601, Australia (S.B.); and
- Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.T., L.Y., S.N., L.W., P.C.B., P.E.H., P.R.J.B., E.M.G.)
| | - Lydia Welsh
- Cell and Molecular Science, James Hutton Institute (D.T., L.Y., S.N., L.W., J.S., J.M., P.C.B., P.E.H., P.R.J.B., E.M.G.), and Division of Plant Science, School of Life Science (at The James Hutton institute) (D.T., L.Y., S.N., P.R.J.B.), University of Dundee Invergowrie, Dundee, DD2 5DA, United Kingdom
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.)
- James Hutton Ltd (at The James Hutton Institute), Plant Sciences Division, Research School of Biology, The Australian National University, Canberra 2601, Australia (S.B.); and
- Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.T., L.Y., S.N., L.W., P.C.B., P.E.H., P.R.J.B., E.M.G.)
| | - Jennifer Stephens
- Cell and Molecular Science, James Hutton Institute (D.T., L.Y., S.N., L.W., J.S., J.M., P.C.B., P.E.H., P.R.J.B., E.M.G.), and Division of Plant Science, School of Life Science (at The James Hutton institute) (D.T., L.Y., S.N., P.R.J.B.), University of Dundee Invergowrie, Dundee, DD2 5DA, United Kingdom
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.)
- James Hutton Ltd (at The James Hutton Institute), Plant Sciences Division, Research School of Biology, The Australian National University, Canberra 2601, Australia (S.B.); and
- Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.T., L.Y., S.N., L.W., P.C.B., P.E.H., P.R.J.B., E.M.G.)
| | - Jenny Morris
- Cell and Molecular Science, James Hutton Institute (D.T., L.Y., S.N., L.W., J.S., J.M., P.C.B., P.E.H., P.R.J.B., E.M.G.), and Division of Plant Science, School of Life Science (at The James Hutton institute) (D.T., L.Y., S.N., P.R.J.B.), University of Dundee Invergowrie, Dundee, DD2 5DA, United Kingdom
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.)
- James Hutton Ltd (at The James Hutton Institute), Plant Sciences Division, Research School of Biology, The Australian National University, Canberra 2601, Australia (S.B.); and
- Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.T., L.Y., S.N., L.W., P.C.B., P.E.H., P.R.J.B., E.M.G.)
| | - Petra C Boevink
- Cell and Molecular Science, James Hutton Institute (D.T., L.Y., S.N., L.W., J.S., J.M., P.C.B., P.E.H., P.R.J.B., E.M.G.), and Division of Plant Science, School of Life Science (at The James Hutton institute) (D.T., L.Y., S.N., P.R.J.B.), University of Dundee Invergowrie, Dundee, DD2 5DA, United Kingdom
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.)
- James Hutton Ltd (at The James Hutton Institute), Plant Sciences Division, Research School of Biology, The Australian National University, Canberra 2601, Australia (S.B.); and
- Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.T., L.Y., S.N., L.W., P.C.B., P.E.H., P.R.J.B., E.M.G.)
| | - Pete E Hedley
- Cell and Molecular Science, James Hutton Institute (D.T., L.Y., S.N., L.W., J.S., J.M., P.C.B., P.E.H., P.R.J.B., E.M.G.), and Division of Plant Science, School of Life Science (at The James Hutton institute) (D.T., L.Y., S.N., P.R.J.B.), University of Dundee Invergowrie, Dundee, DD2 5DA, United Kingdom
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.)
- James Hutton Ltd (at The James Hutton Institute), Plant Sciences Division, Research School of Biology, The Australian National University, Canberra 2601, Australia (S.B.); and
- Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.T., L.Y., S.N., L.W., P.C.B., P.E.H., P.R.J.B., E.M.G.)
| | - Jiasui Zhan
- Cell and Molecular Science, James Hutton Institute (D.T., L.Y., S.N., L.W., J.S., J.M., P.C.B., P.E.H., P.R.J.B., E.M.G.), and Division of Plant Science, School of Life Science (at The James Hutton institute) (D.T., L.Y., S.N., P.R.J.B.), University of Dundee Invergowrie, Dundee, DD2 5DA, United Kingdom
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.)
- James Hutton Ltd (at The James Hutton Institute), Plant Sciences Division, Research School of Biology, The Australian National University, Canberra 2601, Australia (S.B.); and
- Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.T., L.Y., S.N., L.W., P.C.B., P.E.H., P.R.J.B., E.M.G.)
| | - Paul R J Birch
- Cell and Molecular Science, James Hutton Institute (D.T., L.Y., S.N., L.W., J.S., J.M., P.C.B., P.E.H., P.R.J.B., E.M.G.), and Division of Plant Science, School of Life Science (at The James Hutton institute) (D.T., L.Y., S.N., P.R.J.B.), University of Dundee Invergowrie, Dundee, DD2 5DA, United Kingdom
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.)
- James Hutton Ltd (at The James Hutton Institute), Plant Sciences Division, Research School of Biology, The Australian National University, Canberra 2601, Australia (S.B.); and
- Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.T., L.Y., S.N., L.W., P.C.B., P.E.H., P.R.J.B., E.M.G.)
| | - Eleanor M Gilroy
- Cell and Molecular Science, James Hutton Institute (D.T., L.Y., S.N., L.W., J.S., J.M., P.C.B., P.E.H., P.R.J.B., E.M.G.), and Division of Plant Science, School of Life Science (at The James Hutton institute) (D.T., L.Y., S.N., P.R.J.B.), University of Dundee Invergowrie, Dundee, DD2 5DA, United Kingdom;
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.);
- James Hutton Ltd (at The James Hutton Institute), Plant Sciences Division, Research School of Biology, The Australian National University, Canberra 2601, Australia (S.B.); and
- Effector Consortium, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.T., L.Y., S.N., L.W., P.C.B., P.E.H., P.R.J.B., E.M.G.)
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Orosa B, He Q, Mesmar J, Gilroy EM, McLellan H, Yang C, Craig A, Bailey M, Zhang C, Moore JD, Boevink PC, Tian Z, Birch PRJ, Sadanandom A. BTB-BACK Domain Protein POB1 Suppresses Immune Cell Death by Targeting Ubiquitin E3 ligase PUB17 for Degradation. PLoS Genet 2017; 13:e1006540. [PMID: 28056034 PMCID: PMC5249250 DOI: 10.1371/journal.pgen.1006540] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2016] [Revised: 01/20/2017] [Accepted: 12/15/2016] [Indexed: 01/24/2023] Open
Abstract
Hypersensitive response programmed cell death (HR-PCD) is a critical feature in plant immunity required for pathogen restriction and prevention of disease development. The precise control of this process is paramount to cell survival and an effective immune response. The discovery of new components that function to suppress HR-PCD will be instrumental in understanding the regulation of this fundamental mechanism. Here we report the identification and characterisation of a BTB domain E3 ligase protein, POB1, that functions to suppress HR-PCD triggered by evolutionarily diverse pathogens. Nicotiana benthamiana and tobacco plants with reduced POB1 activity show accelerated HR-PCD whilst those with increased POB1 levels show attenuated HR-PCD. We demonstrate that POB1 dimerization and nuclear localization are vital for its function in HR-PCD suppression. Using protein-protein interaction assays, we identify the Plant U-Box E3 ligase PUB17, a well established positive regulator of plant innate immunity, as a target for POB1-mediated proteasomal degradation. Using confocal imaging and in planta immunoprecipitation assays we show that POB1 interacts with PUB17 in the nucleus and stimulates its degradation. Mutated versions of POB1 that show reduced interaction with PUB17 fail to suppress HR-PCD, indicating that POB1-mediated degradation of PUB17 U-box E3 ligase is an important step for negative regulation of specific immune pathways in plants. Our data reveals a new mechanism for BTB domain proteins in suppressing HR-PCD in plant innate immune responses.
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Affiliation(s)
- Beatriz Orosa
- School of Biological and Biomedical Sciences, Durham University, United Kingdom
| | - Qin He
- Division of Plant Sciences, University of Dundee (at JHI), Invergowrie, Dundee, United Kingdom
- Key Laboratory of Horticultural Plant Biology (HAU), Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Joelle Mesmar
- School of Biological and Biomedical Sciences, Durham University, United Kingdom
| | - Eleanor M. Gilroy
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, United Kingdom
| | - Hazel McLellan
- Division of Plant Sciences, University of Dundee (at JHI), Invergowrie, Dundee, United Kingdom
| | - Chengwei Yang
- School of Biological and Biomedical Sciences, Durham University, United Kingdom
| | - Adam Craig
- School of Biological and Biomedical Sciences, Durham University, United Kingdom
| | - Mark Bailey
- School of Biological and Biomedical Sciences, Durham University, United Kingdom
| | - Cunjin Zhang
- School of Biological and Biomedical Sciences, Durham University, United Kingdom
| | | | - Petra C. Boevink
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, United Kingdom
| | - Zhendong Tian
- Key Laboratory of Horticultural Plant Biology (HAU), Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Paul R. J. Birch
- Division of Plant Sciences, University of Dundee (at JHI), Invergowrie, Dundee, United Kingdom
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, United Kingdom
| | - Ari Sadanandom
- School of Biological and Biomedical Sciences, Durham University, United Kingdom
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32
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Kwenda S, Motlolometsi TV, Birch PRJ, Moleleki LN. RNA-seq Profiling Reveals Defense Responses in a Tolerant Potato Cultivar to Stem Infection by Pectobacterium carotovorum ssp. brasiliense. Front Plant Sci 2016; 7:1905. [PMID: 28066465 PMCID: PMC5167753 DOI: 10.3389/fpls.2016.01905] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2016] [Accepted: 12/01/2016] [Indexed: 05/28/2023]
Abstract
Pectobacterium carotovorum subsp. brasiliense is a member of the soft rot Enterobacteriaceae (SRE) family that causes tuber soft rot and blackleg diseases of stems in potato plants. Currently, there are no effective chemical strategies for the control of members of the SRE. Thus, an understanding of the inducible defense responses in stems of potato plants is important, particularly during colonization of the vascular system. Here, time-course RNA-sequencing analysis was used to compare expressed genes between a susceptible potato cultivar (Solanum tuberosum cv Valor) and a tolerant cultivar (S. tuberosum cv BP1) at 0, 6, 12, 24, and 72 h post-inoculation with P. c. brasiliense. In total, we identified 6139 and 8214 differentially expressed genes (DEGs) in the tolerant and susceptible cultivars, compared to mock-inoculated controls, respectively. Key DEGs distinguishing between tolerance and susceptibility were associated with negative regulation of cell death and plant-type cell wall organization/biogenesis biological processes in the tolerant and susceptible cultivars, respectively. Among these were DEGs involved in signaling (mainly MAPK cascade and ethylene pathway), defense-related transcription regulation including WRKY transcription factors, and downstream secondary cell biosynthesis. Together, our results suggest that S. tuberosum cv BP1 likely employs quantitative defense response against P. c. brasiliense. Overall, our study provides the first transcriptome-wide insight into the molecular basis of tolerance and/or resistance of potato stems to SRE infection.
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Affiliation(s)
- Stanford Kwenda
- Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of PretoriaPretoria, South Africa
| | - Tshepiso V. Motlolometsi
- Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of PretoriaPretoria, South Africa
| | - Paul R. J. Birch
- Division of Plant Sciences, James Hutton Institute, College of Life Sciences, University of DundeeDundee, UK
| | - Lucy N. Moleleki
- Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, Genomics Research Institute, University of PretoriaPretoria, South Africa
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Eves-van den Akker S, Birch PRJ. Opening the Effector Protein Toolbox for Plant-Parasitic Cyst Nematode Interactions. Mol Plant 2016; 9:1451-1453. [PMID: 27693399 PMCID: PMC5106285 DOI: 10.1016/j.molp.2016.09.008] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2016] [Revised: 09/12/2016] [Accepted: 09/21/2016] [Indexed: 05/19/2023]
Affiliation(s)
- Sebastian Eves-van den Akker
- Division of Plant Sciences, College of Life Sciences, University of Dundee, Dundee DD1 5EH, UK; The Department of Biological Chemistry, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK.
| | - Paul R J Birch
- Division of Plant Sciences, College of Life Sciences, University of Dundee, Dundee DD1 5EH, UK
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Kwenda S, Birch PRJ, Moleleki LN. Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection. BMC Genomics 2016; 17:614. [PMID: 27515663 PMCID: PMC4982125 DOI: 10.1186/s12864-016-2967-9] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2016] [Accepted: 07/25/2016] [Indexed: 12/12/2022] Open
Abstract
BACKGROUND Long noncoding RNAs (lncRNAs) represent a class of RNA molecules that are implicated in regulation of gene expression in both mammals and plants. While much progress has been made in determining the biological functions of lncRNAs in mammals, the functional roles of lncRNAs in plants are still poorly understood. Specifically, the roles of long intergenic nocoding RNAs (lincRNAs) in plant defence responses are yet to be fully explored. RESULTS In this study, we used strand-specific RNA sequencing to identify 1113 lincRNAs in potato (Solanum tuberosum) from stem tissues. The lincRNAs are expressed from all 12 potato chromosomes and generally smaller in size compared to protein-coding genes. Like in other plants, most potato lincRNAs possess single exons. A time-course RNA-seq analysis between a tolerant and a susceptible potato cultivar showed that 559 lincRNAs are responsive to Pectobacterium carotovorum subsp. brasiliense challenge compared to mock-inoculated controls. Moreover, coexpression analysis revealed that 17 of these lincRNAs are highly associated with 12 potato defence-related genes. CONCLUSIONS Together, these results suggest that lincRNAs have potential functional roles in potato defence responses. Furthermore, this work provides the first library of potato lincRNAs and a set of novel lincRNAs implicated in potato defences against P. carotovorum subsp. brasiliense, a member of the soft rot Enterobacteriaceae phytopathogens.
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Affiliation(s)
- Stanford Kwenda
- Forestry and Agricultural Biotechnology Institute (FABI), Genomics Research Institute (GRI), Department of Microbiology and Plant Pathology, University of Pretoria, Pretoria, 0028, South Africa
| | - Paul R J Birch
- The Division of Plant Sciences, College of Life Sciences, University of Dundee (at The James Hutton Institute), Dundee, DD25DA, Scotland, UK
| | - Lucy N Moleleki
- Forestry and Agricultural Biotechnology Institute (FABI), Genomics Research Institute (GRI), Department of Microbiology and Plant Pathology, University of Pretoria, Pretoria, 0028, South Africa.
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Boevink PC, McLellan H, Gilroy EM, Naqvi S, He Q, Yang L, Wang X, Turnbull D, Armstrong MR, Tian Z, Birch PRJ. Oomycetes Seek Help from the Plant: Phytophthora infestans Effectors Target Host Susceptibility Factors. Mol Plant 2016; 9:636-638. [PMID: 27095376 DOI: 10.1016/j.molp.2016.04.005] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2016] [Revised: 04/07/2016] [Accepted: 04/10/2016] [Indexed: 05/20/2023]
Affiliation(s)
- Petra C Boevink
- Cell and Molecular Science, James Hutton Institute (JHI), Invergowrie, Dundee DD2 5DA, UK
| | - Hazel McLellan
- Division of Plant Science, College of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, UK
| | - Eleanor M Gilroy
- Cell and Molecular Science, James Hutton Institute (JHI), Invergowrie, Dundee DD2 5DA, UK
| | - Shaista Naqvi
- Cell and Molecular Science, James Hutton Institute (JHI), Invergowrie, Dundee DD2 5DA, UK; Division of Plant Science, College of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, UK
| | - Qin He
- Cell and Molecular Science, James Hutton Institute (JHI), Invergowrie, Dundee DD2 5DA, UK; Division of Plant Science, College of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, UK; Key Laboratory of Horticultural Plant Biology, Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Lina Yang
- Cell and Molecular Science, James Hutton Institute (JHI), Invergowrie, Dundee DD2 5DA, UK; Division of Plant Science, College of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, UK; Fujian Key Laboratory of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Xiaodan Wang
- Cell and Molecular Science, James Hutton Institute (JHI), Invergowrie, Dundee DD2 5DA, UK; Division of Plant Science, College of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, UK; Virus-free Seedling Research Institute of Heilongjiang Academy of Agricultural Sciences, 368 Xuefu Road, Harbin 150086, China
| | - Dionne Turnbull
- Division of Plant Science, College of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, UK
| | - Miles R Armstrong
- Cell and Molecular Science, James Hutton Institute (JHI), Invergowrie, Dundee DD2 5DA, UK; Division of Plant Science, College of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, UK
| | - Zhendong Tian
- Key Laboratory of Horticultural Plant Biology, Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Paul R J Birch
- Cell and Molecular Science, James Hutton Institute (JHI), Invergowrie, Dundee DD2 5DA, UK; Division of Plant Science, College of Life Science, University of Dundee (at JHI), Invergowrie, Dundee DD2 5DA, UK.
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Yang L, McLellan H, Naqvi S, He Q, Boevink PC, Armstrong M, Giuliani LM, Zhang W, Tian Z, Zhan J, Gilroy EM, Birch PRJ. Potato NPH3/RPT2-Like Protein StNRL1, Targeted by a Phytophthora infestans RXLR Effector, Is a Susceptibility Factor. Plant Physiol 2016; 171:645-57. [PMID: 26966171 PMCID: PMC4854710 DOI: 10.1104/pp.16.00178] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2016] [Accepted: 03/09/2016] [Indexed: 05/20/2023]
Abstract
Plant pathogens deliver effectors to manipulate host processes. We know little about how fungal and oomycete effectors target host proteins to promote susceptibility, yet such knowledge is vital to understand crop disease. We show that either transient expression in Nicotiana benthamiana, or stable transgenic expression in potato (Solanum tuberosum), of the Phytophthora infestans RXLR effector Pi02860 enhances leaf colonization by the pathogen. Expression of Pi02860 also attenuates cell death triggered by the P. infestans microbe-associated molecular pattern INF1, indicating that the effector suppresses pattern-triggered immunity. However, the effector does not attenuate cell death triggered by Cf4/Avr4 coexpression, showing that it does not suppress all cell death activated by cell surface receptors. Pi02860 interacts in yeast two-hybrid assays with potato NPH3/RPT2-LIKE1 (NRL1), a predicted CULLIN3-associated ubiquitin E3 ligase. Interaction of Pi02860 in planta was confirmed by coimmunoprecipitation and bimolecular fluorescence complementation assays. Virus-induced gene silencing of NRL1 in N. benthamiana resulted in reduced P. infestans colonization and accelerated INF1-mediated cell death, indicating that this host protein acts as a negative regulator of immunity. Moreover, whereas NRL1 virus-induced gene silencing had no effect on the ability of the P. infestans effector Avr3a to suppress INF1-mediated cell death, such suppression by Pi02860 was significantly attenuated, indicating that this activity of Pi02860 is mediated by NRL1. Transient overexpression of NRL1 resulted in the suppression of INF1-mediated cell death and enhanced P. infestans leaf colonization, demonstrating that NRL1 acts as a susceptibility factor to promote late blight disease.
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Affiliation(s)
- Lina Yang
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.);Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., S.N., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., S.N., Q.H., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Division of Plant Science, School of Life Science, University of Dundee, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., Q.H., M.A., P.R.J.B.); andKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China (Q.H., W.Z., Z.T.)
| | - Hazel McLellan
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.);Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., S.N., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., S.N., Q.H., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Division of Plant Science, School of Life Science, University of Dundee, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., Q.H., M.A., P.R.J.B.); andKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China (Q.H., W.Z., Z.T.)
| | - Shaista Naqvi
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.);Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., S.N., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., S.N., Q.H., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Division of Plant Science, School of Life Science, University of Dundee, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., Q.H., M.A., P.R.J.B.); andKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China (Q.H., W.Z., Z.T.)
| | - Qin He
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.);Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., S.N., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., S.N., Q.H., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Division of Plant Science, School of Life Science, University of Dundee, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., Q.H., M.A., P.R.J.B.); andKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China (Q.H., W.Z., Z.T.)
| | - Petra C Boevink
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.);Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., S.N., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., S.N., Q.H., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Division of Plant Science, School of Life Science, University of Dundee, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., Q.H., M.A., P.R.J.B.); andKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China (Q.H., W.Z., Z.T.)
| | - Miles Armstrong
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.);Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., S.N., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., S.N., Q.H., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Division of Plant Science, School of Life Science, University of Dundee, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., Q.H., M.A., P.R.J.B.); andKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China (Q.H., W.Z., Z.T.)
| | - Licida M Giuliani
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.);Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., S.N., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., S.N., Q.H., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Division of Plant Science, School of Life Science, University of Dundee, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., Q.H., M.A., P.R.J.B.); andKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China (Q.H., W.Z., Z.T.)
| | - Wei Zhang
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.);Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., S.N., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., S.N., Q.H., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Division of Plant Science, School of Life Science, University of Dundee, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., Q.H., M.A., P.R.J.B.); andKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China (Q.H., W.Z., Z.T.)
| | - Zhendong Tian
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.);Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., S.N., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., S.N., Q.H., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Division of Plant Science, School of Life Science, University of Dundee, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., Q.H., M.A., P.R.J.B.); andKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China (Q.H., W.Z., Z.T.)
| | - Jiasui Zhan
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.);Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., S.N., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., S.N., Q.H., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Division of Plant Science, School of Life Science, University of Dundee, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., Q.H., M.A., P.R.J.B.); andKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China (Q.H., W.Z., Z.T.)
| | - Eleanor M Gilroy
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.);Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., S.N., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., S.N., Q.H., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Division of Plant Science, School of Life Science, University of Dundee, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., Q.H., M.A., P.R.J.B.); andKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China (Q.H., W.Z., Z.T.)
| | - Paul R J Birch
- Fujian Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agricultural and Forestry University, Fuzhou, Fujian 350002, China (L.Y., J.Z.);Cell and Molecular Science, James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., S.N., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Dundee Effector Consortium, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., S.N., Q.H., P.C.B., M.A., L.M.G., E.M.G., P.R.J.B.);Division of Plant Science, School of Life Science, University of Dundee, Invergowrie, Dundee DD2 5DA, United Kingdom (L.Y., H.M., Q.H., M.A., P.R.J.B.); andKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China (Q.H., W.Z., Z.T.)
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Boevink PC, Wang X, McLellan H, He Q, Naqvi S, Armstrong MR, Zhang W, Hein I, Gilroy EM, Tian Z, Birch PRJ. A Phytophthora infestans RXLR effector targets plant PP1c isoforms that promote late blight disease. Nat Commun 2016; 7:10311. [PMID: 26822079 PMCID: PMC4740116 DOI: 10.1038/ncomms10311] [Citation(s) in RCA: 91] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2015] [Accepted: 11/26/2015] [Indexed: 01/17/2023] Open
Abstract
Plant pathogens deliver effectors to alter host processes. Knowledge of how effectors target and manipulate host proteins is critical to understand crop disease. Here, we show that in planta expression of the RXLR effector Pi04314 enhances leaf colonization by Phytophthora infestans via activity in the host nucleus and attenuates induction of jasmonic and salicylic acid-responsive genes. Pi04314 interacts with three host protein phosphatase 1 catalytic (PP1c) isoforms, causing their re-localization from the nucleolus to the nucleoplasm. Re-localization of PP1c-1 also occurs during infection and is dependent on an R/KVxF motif in the effector. Silencing the PP1c isoforms or overexpression of a phosphatase-dead PP1c-1 mutant attenuates infection, demonstrating that host PP1c activity is required for disease. Moreover, expression of PP1c-1mut abolishes enhanced leaf colonization mediated by in planta Pi04314 expression. We argue that PP1c isoforms are susceptibility factors forming holoenzymes with Pi04314 to promote late blight disease.
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Affiliation(s)
- Petra C. Boevink
- Department of Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Xiaodan Wang
- Department of Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
- Division of Plant Sciences, College of Life Science, University of Dundee (at JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK
- Virus-free Seedling Research Institute of Heilongjiang Academy of Agricultural Sciences, 368 Xuefu Road, Harbin 150086, China
| | - Hazel McLellan
- Division of Plant Sciences, College of Life Science, University of Dundee (at JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Qin He
- Division of Plant Sciences, College of Life Science, University of Dundee (at JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK
- Key Laboratory of Horticultural Plant Biology (at HAU), Ministry of Education, National Center for Vegetable Improvement (Central China), Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Shaista Naqvi
- Department of Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Miles R. Armstrong
- Department of Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
- Division of Plant Sciences, College of Life Science, University of Dundee (at JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Wei Zhang
- Key Laboratory of Horticultural Plant Biology (at HAU), Ministry of Education, National Center for Vegetable Improvement (Central China), Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Ingo Hein
- Department of Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Eleanor M. Gilroy
- Department of Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Zhendong Tian
- Key Laboratory of Horticultural Plant Biology (at HAU), Ministry of Education, National Center for Vegetable Improvement (Central China), Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Paul R. J. Birch
- Department of Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
- Division of Plant Sciences, College of Life Science, University of Dundee (at JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK
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Kwenda S, Gorshkov V, Ramesh AM, Naidoo S, Rubagotti E, Birch PRJ, Moleleki LN. Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum. BMC Genomics 2016; 17:47. [PMID: 26753530 PMCID: PMC4710047 DOI: 10.1186/s12864-016-2376-0] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2015] [Accepted: 01/06/2016] [Indexed: 12/15/2022] Open
Abstract
Background Small RNAs (sRNAs) have emerged as important regulatory molecules and have been studied in several bacteria. However, to date, there have been no whole-transcriptome studies on sRNAs in any of the Soft Rot Enterobacteriaceae (SRE) group of pathogens. Although the main ecological niches for these pathogens are plants, a significant part of their life cycle is undertaken outside their host within adverse soil environment. However, the mechanisms of SRE adaptation to this harsh nutrient-deficient environment are poorly understood. Results In the study reported herein, by using strand-specific RNA-seq analysis and in silico sRNA predictions, we describe the sRNA pool of Pectobacterium atrosepticum and reveal numerous sRNA candidates, including those that are induced during starvation-activated stress responses. Consequently, strand-specific RNA-seq enabled detection of 137 sRNAs and sRNA candidates under starvation conditions; 25 of these sRNAs were predicted for this bacterium in silico. Functional annotations were computationally assigned to 68 sRNAs. The expression of sRNAs in P. atrosepticum was compared under growth-promoting and starvation conditions: 68 sRNAs were differentially expressed with 47 sRNAs up-regulated under nutrient-deficient conditions. Conservation analysis using BLAST showed that most of the identified sRNAs are conserved within the SRE. Subsequently, we identified 9 novel sRNAs within the P. atrosepticum genome. Conclusions Since many of the identified sRNAs are starvation-induced, the results of our study suggests that sRNAs play key roles in bacterial adaptive response. Finally, this work provides a basis for future experimental characterization and validation of sRNAs in plant pathogens. Electronic supplementary material The online version of this article (doi:10.1186/s12864-016-2376-0) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Stanford Kwenda
- Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa.
| | - Vladimir Gorshkov
- Kazan Institute of Biochemistry and Biophysics, Kazan Scientific Center, Russian Academy of Sciences, Kazan, Russia. .,Department of Botany and Plant Physiology, Kazan Federal University, Kazan, Russia.
| | - Aadi Moolam Ramesh
- Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa.
| | - Sanushka Naidoo
- Department of Genetics, Forestry and Agricultural Biotechnology (FABI), University of Pretoria, Pretoria, South Africa.
| | - Enrico Rubagotti
- Genomics Research Institute, Centre for Microbial Ecology and Genomics (CMEG), University of Pretoria, Pretoria, South Africa.
| | - Paul R J Birch
- Division of Plant Sciences, College of Life Sciences, University of Dundee (at The James Hutton Institute), Errol Road, Invergowrie, Dundee, DD25DA, Scotland, UK.
| | - Lucy N Moleleki
- Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa.
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Van Weymers PSM, Baker K, Chen X, Harrower B, Cooke DEL, Gilroy EM, Birch PRJ, Thilliez GJA, Lees AK, Lynott JS, Armstrong MR, McKenzie G, Bryan GJ, Hein I. Utilizing "Omic" Technologies to Identify and Prioritize Novel Sources of Resistance to the Oomycete Pathogen Phytophthora infestans in Potato Germplasm Collections. Front Plant Sci 2016; 7:672. [PMID: 27303410 PMCID: PMC4882398 DOI: 10.3389/fpls.2016.00672] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2016] [Accepted: 05/02/2016] [Indexed: 05/02/2023]
Abstract
The greatest threat to potato production world-wide is late blight, caused by the oomycete pathogen Phytophthora infestans. A screen of 126 wild diploid Solanum accessions from the Commonwealth Potato Collection (CPC) with P. infestans isolates belonging to the genotype 13-A2 identified resistances in the species S. bulbocastanum, S. capsicibaccatum, S. microdontum, S. mochiquense, S. okadae, S. pinnatisectum, S. polyadenium, S. tarijense, and S. verrucosum. Effector-omics, allele mining, and diagnostic RenSeq (dRenSeq) were utilized to investigate the nature of resistances in S. okadae accessions. dRenSeq in resistant S. okadae accessions 7129, 7625, 3762, and a bulk of 20 resistant progeny confirmed the presence of full-length Rpi-vnt1.1 under stringent mapping conditions and corroborated allele mining results in the accessions 7129 and 7625 as well as Avr-vnt1 recognition in transient expression assays. In contrast, susceptible S. okadae accession 3761 and a bulk of 20 susceptible progeny lacked sequence homology in the 5' end compared to the functional Rpi-vnt1.1 gene. Further evaluation of S. okadae accessions with P. infestans isolates that have a broad spectrum of virulence demonstrated that, although S. okadae accessions 7129, 7625, and 7629 contain functional Rpi-vnt1.1, they also carry a novel resistance gene. We provide evidence that existing germplasm collections are important sources of novel resistances and that "omic" technologies such as dRenSeq-based genomics and effector-omics are efficacious tools to rapidly explore the diversity within these collections.
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Affiliation(s)
| | - Katie Baker
- Information and Computational Sciences, The James Hutton InstituteDundee, UK
| | - Xinwei Chen
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
| | - Brian Harrower
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
| | | | | | - Paul R. J. Birch
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
| | | | - Alison K. Lees
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
| | - James S. Lynott
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
| | | | - Gaynor McKenzie
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
| | - Glenn J. Bryan
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
- *Correspondence: Glenn J. Bryan
| | - Ingo Hein
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
- Ingo Hein
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Du Y, Mpina MH, Birch PRJ, Bouwmeester K, Govers F. Phytophthora infestans RXLR Effector AVR1 Interacts with Exocyst Component Sec5 to Manipulate Plant Immunity. Plant Physiol 2015; 169:1975-90. [PMID: 26336092 PMCID: PMC4634092 DOI: 10.1104/pp.15.01169] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2015] [Accepted: 08/30/2015] [Indexed: 05/24/2023]
Abstract
Phytophthora infestans secretes numerous RXLR effectors that modulate host defense and thereby pave the way for successful invasion. Here, we show that the RXLR effector AVR1 is a virulence factor that promotes colonization and suppresses callose deposition, a hallmark of basal defense. To identify host targets of AVR1, we performed yeast two-hybrid screens and selected Sec5 as a candidate. Sec5 is a subunit of the exocyst, a protein complex that is involved in vesicle trafficking. AVR1-like (A-L), a close homolog of AVR1, also acts as a virulence factor, but unlike AVR1, A-L does not suppress CRINKLER2 (CRN2)-induced cell death or interact with Sec5. Compared with AVR1, A-L is shorter and lacks the carboxyl-terminal tail, the T-region that is crucial for CRN2-induced cell death suppression and Sec5 interaction. In planta analyses revealed that AVR1 and Sec5 are in close proximity, and coimmunoprecipitation confirmed the interaction. Sec5 is required for secretion of the pathogenesis-related protein PR-1 and callose deposition and also plays a role in CRN2-induced cell death. Our findings show that P. infestans manipulates an exocyst subunit and thereby potentially disturbs vesicle trafficking, a cellular process that is important for basal defense. This is a novel strategy that oomycete pathogens exploit to modulate host defense.
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Affiliation(s)
- Yu Du
- Laboratory of Phytopathology, Wageningen University, 6708 PB, Wageningen, The Netherlands (Y.D., M.H.M., K.B., F.G.);Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, United Kingdom (P.R.J.B.); andPlant-Microbe Interactions, Department of Biology, Faculty of Science, Utrecht University, 3584 CH, Utrecht, The Netherlands (K.B.)
| | - Mohamed H Mpina
- Laboratory of Phytopathology, Wageningen University, 6708 PB, Wageningen, The Netherlands (Y.D., M.H.M., K.B., F.G.);Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, United Kingdom (P.R.J.B.); andPlant-Microbe Interactions, Department of Biology, Faculty of Science, Utrecht University, 3584 CH, Utrecht, The Netherlands (K.B.)
| | - Paul R J Birch
- Laboratory of Phytopathology, Wageningen University, 6708 PB, Wageningen, The Netherlands (Y.D., M.H.M., K.B., F.G.);Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, United Kingdom (P.R.J.B.); andPlant-Microbe Interactions, Department of Biology, Faculty of Science, Utrecht University, 3584 CH, Utrecht, The Netherlands (K.B.)
| | - Klaas Bouwmeester
- Laboratory of Phytopathology, Wageningen University, 6708 PB, Wageningen, The Netherlands (Y.D., M.H.M., K.B., F.G.);Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, United Kingdom (P.R.J.B.); andPlant-Microbe Interactions, Department of Biology, Faculty of Science, Utrecht University, 3584 CH, Utrecht, The Netherlands (K.B.)
| | - Francine Govers
- Laboratory of Phytopathology, Wageningen University, 6708 PB, Wageningen, The Netherlands (Y.D., M.H.M., K.B., F.G.);Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, United Kingdom (P.R.J.B.); andPlant-Microbe Interactions, Department of Biology, Faculty of Science, Utrecht University, 3584 CH, Utrecht, The Netherlands (K.B.)
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Wang X, Boevink P, McLellan H, Armstrong M, Bukharova T, Qin Z, Birch PRJ. A Host KH RNA-Binding Protein Is a Susceptibility Factor Targeted by an RXLR Effector to Promote Late Blight Disease. Mol Plant 2015; 8:1385-95. [PMID: 25936676 PMCID: PMC4560694 DOI: 10.1016/j.molp.2015.04.012] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2015] [Revised: 03/19/2015] [Accepted: 04/15/2015] [Indexed: 05/18/2023]
Abstract
Plant pathogens deliver effector proteins that alter host processes to create an environment conducive to colonization. Attention has focused on identifying the targets of effectors and how their manipulation facilitates disease. RXLR effector Pi04089 from the potato blight pathogen Phytophthora infestans accumulates in the host nucleus and enhances colonization when transiently expressed in planta. Its nuclear localization is required for enhanced P. infestans colonization. Pi04089 interacts in yeast and in planta with a putative potato K-homology (KH) RNA-binding protein, StKRBP1. Co-localization of Pi04089 and StKRBP1, and bimolecular fluorescence complementation between them, indicate they associate at nuclear speckles. StKRBP1 protein levels increased when it was co-expressed with Pi04089. Indeed, such accumulation of StKRBP1 was observed also on the first day of leaf colonization by the pathogen. Remarkably, overexpression of StKRBP1 significantly enhances P. infestans infection. Mutation of the nucleotide-binding motif GxxG to GDDG in all three KH domains of StKRBP1 abolishes its interaction with Pi04089, its localization to nuclear speckles, and its increased accumulation when co-expressed with the effector. Moreover, the mutant StKRBP1 protein no longer enhances leaf colonization by P. infestans, implying that nucleotide binding is likely required for this activity. We thus argue that StKRBP1 can be regarded as a susceptibility factor, as its activity is beneficial to the pathogen.
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Affiliation(s)
- Xiaodan Wang
- Horticultural College, Northeast Agricultural University, No. 59 Mucai Road, Harbin 150030, China; Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK; Division of Plant Sciences, College of Life Sciences, University of Dundee (at JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK; Virus-free Seedling Research Institute of Heilongjiang Academy of Agricultural Sciences, No. 368 Xuefu Road, Harbin 150086, China
| | - Petra Boevink
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Hazel McLellan
- Division of Plant Sciences, College of Life Sciences, University of Dundee (at JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Miles Armstrong
- Division of Plant Sciences, College of Life Sciences, University of Dundee (at JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Tatyana Bukharova
- Division of Plant Sciences, College of Life Sciences, University of Dundee (at JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Zhiwei Qin
- Horticultural College, Northeast Agricultural University, No. 59 Mucai Road, Harbin 150030, China.
| | - Paul R J Birch
- Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK; Division of Plant Sciences, College of Life Sciences, University of Dundee (at JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK.
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Fry WE, Birch PRJ, Judelson HS, Grünwald NJ, Danies G, Everts KL, Gevens AJ, Gugino BK, Johnson DA, Johnson SB, McGrath MT, Myers KL, Ristaino JB, Roberts PD, Secor G, Smart CD. Five Reasons to Consider Phytophthora infestans a Reemerging Pathogen. Phytopathology 2015; 105:966-81. [PMID: 25760519 DOI: 10.1094/phyto-01-15-0005-fi] [Citation(s) in RCA: 143] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Phytophthora infestans has been a named pathogen for well over 150 years and yet it continues to "emerge", with thousands of articles published each year on it and the late blight disease that it causes. This review explores five attributes of this oomycete pathogen that maintain this constant attention. First, the historical tragedy associated with this disease (Irish potato famine) causes many people to be fascinated with the pathogen. Current technology now enables investigators to answer some questions of historical significance. Second, the devastation caused by the pathogen continues to appear in surprising new locations or with surprising new intensity. Third, populations of P. infestans worldwide are in flux, with changes that have major implications to disease management. Fourth, the genomics revolution has enabled investigators to make tremendous progress in terms of understanding the molecular biology (especially the pathogenicity) of P. infestans. Fifth, there remain many compelling unanswered questions.
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Affiliation(s)
- W E Fry
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - P R J Birch
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - H S Judelson
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - N J Grünwald
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - G Danies
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - K L Everts
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - A J Gevens
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - B K Gugino
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - D A Johnson
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - S B Johnson
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - M T McGrath
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - K L Myers
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - J B Ristaino
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - P D Roberts
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - G Secor
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
| | - C D Smart
- First, fifth, and twelfth authors: Cornell University, Section of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Bldg., Ithaca, NY 14850; second author: Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie, Dundee, DD2 4DA, UK; third author: Department of Plant Pathology and Microbiology, University of California, Riverside 92521; fourth author: Horticultural Crops Research Laboratory, United States Department of Agriculture-Agricultural Research Service, 3420 NW Orchard Ave., Corvallis, OR 97330; sixth author: Plant Pathology Department, University of Maryland, 27664 Nanticoke Rd., Salisbury 21801; seventh author: University of Wisconsin Department of Plant Pathology, 1630 Linden Dr., Madison 53706-1598; eighth author: Department of Plant Pathology and Environmental Microbiology, College of Agricultural Sciences, The Pennsylvania State University, 219 Buckhout Lab, University Park 16802; ninth author: Department of Plant Pathology, Washington State University, PO Box 646430, Pullman; tenth author: University of Maine Cooperative Extension, 57 Houlton Road, Presque Isle 04769; eleventh author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Long Island Horticultural Research & Extension Center, Riverhead, NY 11901-1098; thirteenth author: Department of Plant Pathology, Room 2419 Gardner Hall, NC State University, Raleigh 27695; fourteenth author: Department of Plant Pathology, University of Florida, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee 34142-9515; fifteenth author: Department of Plant Pathology, North Dakota State University, 328 Walster Hall, Dept. 7660, PO Box6050, Fargo 58108-6050; and sixteenth author: Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Barton Lab, NYSAES, 630 West North Street, Geneva, NY 14456
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He Q, McLellan H, Boevink PC, Sadanandom A, Xie C, Birch PRJ, Tian Z. U-box E3 ubiquitin ligase PUB17 acts in the nucleus to promote specific immune pathways triggered by Phytophthora infestans. J Exp Bot 2015; 66:3189-99. [PMID: 25873665 PMCID: PMC4449539 DOI: 10.1093/jxb/erv128] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Ubiquitination regulates many processes in plants, including immunity. The E3 ubiquitin ligase PUB17 is a positive regulator of programmed cell death (PCD) triggered by resistance proteins CF4/9 in tomato. Its role in immunity to the potato late blight pathogen, Phytophthora infestans, was investigated here. Silencing StPUB17 in potato by RNAi and NbPUB17 in Nicotiana benthamiana by virus-induced gene silencing (VIGS) each enhanced P. infestans leaf colonization. PAMP-triggered immunity (PTI) transcriptional responses activated by flg22, and CF4/Avr4-mediated PCD were attenuated by silencing PUB17. However, silencing PUB17 did not compromise PCD triggered by P. infestans PAMP INF1, or co-expression of R3a/AVR3a, demonstrating that not all PTI- and PCD-associated responses require PUB17. PUB17 localizes to the plant nucleus and especially in the nucleolus. Transient over-expression of a dominant-negative StPUB17(V314I,V316I) mutant, which retained nucleolar localization, suppressed CF4-mediated cell death and enhanced P. infestans colonization. Exclusion of the StPUB17(V314I,V316I) mutant from the nucleus abolished its dominant-negative activity, demonstrating that StPUB17 functions in the nucleus. PUB17 is a positive regulator of immunity to late blight that acts in the nucleus to promote specific PTI and PCD pathways.
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Affiliation(s)
- Qin He
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei, 430070, China and the National Centre for Vegetable Improvement (Central China), Huazhong Agricultural University, Wuhan, Hubei, 430070, China; Division of Plant Sciences, University of Dundee, James Hutton Institute (JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK Dundee Effector Consortium, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Hazel McLellan
- Division of Plant Sciences, University of Dundee, James Hutton Institute (JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK Dundee Effector Consortium, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Petra C Boevink
- Dundee Effector Consortium, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Ari Sadanandom
- Durham Centre for Crop Improvement Technology School of Biological and Biomedical Sciences, Durham University, Durham DH1 3HP, UK
| | - Conghua Xie
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei, 430070, China and the National Centre for Vegetable Improvement (Central China), Huazhong Agricultural University, Wuhan, Hubei, 430070, China
| | - Paul R J Birch
- Division of Plant Sciences, University of Dundee, James Hutton Institute (JHI), Errol Road, Invergowrie, Dundee DD2 5DA, UK Dundee Effector Consortium, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK Cell and Molecular Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Zhendong Tian
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei, 430070, China and the National Centre for Vegetable Improvement (Central China), Huazhong Agricultural University, Wuhan, Hubei, 430070, China;
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Kamoun S, Furzer O, Jones JDG, Judelson HS, Ali GS, Dalio RJD, Roy SG, Schena L, Zambounis A, Panabières F, Cahill D, Ruocco M, Figueiredo A, Chen XR, Hulvey J, Stam R, Lamour K, Gijzen M, Tyler BM, Grünwald NJ, Mukhtar MS, Tomé DFA, Tör M, Van Den Ackerveken G, McDowell J, Daayf F, Fry WE, Lindqvist-Kreuze H, Meijer HJG, Petre B, Ristaino J, Yoshida K, Birch PRJ, Govers F. The Top 10 oomycete pathogens in molecular plant pathology. Mol Plant Pathol 2015; 16:413-34. [PMID: 25178392 PMCID: PMC6638381 DOI: 10.1111/mpp.12190] [Citation(s) in RCA: 439] [Impact Index Per Article: 48.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Oomycetes form a deep lineage of eukaryotic organisms that includes a large number of plant pathogens which threaten natural and managed ecosystems. We undertook a survey to query the community for their ranking of plant-pathogenic oomycete species based on scientific and economic importance. In total, we received 263 votes from 62 scientists in 15 countries for a total of 33 species. The Top 10 species and their ranking are: (1) Phytophthora infestans; (2, tied) Hyaloperonospora arabidopsidis; (2, tied) Phytophthora ramorum; (4) Phytophthora sojae; (5) Phytophthora capsici; (6) Plasmopara viticola; (7) Phytophthora cinnamomi; (8, tied) Phytophthora parasitica; (8, tied) Pythium ultimum; and (10) Albugo candida. This article provides an introduction to these 10 taxa and a snapshot of current research. We hope that the list will serve as a benchmark for future trends in oomycete research.
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Affiliation(s)
- Sophien Kamoun
- The Sainsbury Laboratory, Norwich Research Park, Norwich, NR4 7UH, UK
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45
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Affiliation(s)
- Leighton Pritchard
- Information and Computational Sciences, University of Dundee, Errol Rd, Invergowrie, Dundee, DD2 5DA, UK; Dundee Effector Consortium, University of Dundee, Errol Rd, Invergowrie, Dundee, DD2 5DA, UK; Centre for Human and Animal Pathogens in the Environment, University of Dundee, Errol Rd, Invergowrie, Dundee, DD2 5DA, UK
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46
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Wiesel L, Newton AC, Elliott I, Booty D, Gilroy EM, Birch PRJ, Hein I. Molecular effects of resistance elicitors from biological origin and their potential for crop protection. Front Plant Sci 2014; 5:655. [PMID: 25484886 PMCID: PMC4240061 DOI: 10.3389/fpls.2014.00655] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2014] [Accepted: 11/04/2014] [Indexed: 05/17/2023]
Abstract
Plants contain a sophisticated innate immune network to prevent pathogenic microbes from gaining access to nutrients and from colonizing internal structures. The first layer of inducible response is governed by the plant following the perception of microbe- or modified plant-derived molecules. As the perception of these molecules results in a plant response that can provide efficient resistance toward non-adapted pathogens they can also be described as "defense elicitors." In compatible plant/microbe interactions, adapted microorganisms have means to avoid or disable this resistance response and promote virulence. However, this requires a detailed spatial and temporal response from the invading pathogens. In agricultural practice, treating plants with isolated defense elicitors in the absence of pathogens can promote plant resistance by uncoupling defense activation from the effects of pathogen virulence determinants. The plant responses to plant, bacterial, oomycete, or fungal-derived elicitors are not, in all cases, universal and need elucidating prior to the application in agriculture. This review provides an overview of currently known elicitors of biological rather than synthetic origin and places their activity into a molecular context.
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Affiliation(s)
- Lea Wiesel
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
| | - Adrian C. Newton
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
| | | | | | | | - Paul R. J. Birch
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
- The Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton InstituteDundee, UK
| | - Ingo Hein
- Cell and Molecular Sciences, The James Hutton InstituteDundee, UK
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Chapman S, Stevens LJ, Boevink PC, Engelhardt S, Alexander CJ, Harrower B, Champouret N, McGeachy K, Van Weymers PSM, Chen X, Birch PRJ, Hein I. Detection of the virulent form of AVR3a from Phytophthora infestans following artificial evolution of potato resistance gene R3a. PLoS One 2014; 9:e110158. [PMID: 25340613 PMCID: PMC4207746 DOI: 10.1371/journal.pone.0110158] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2014] [Accepted: 09/08/2014] [Indexed: 11/24/2022] Open
Abstract
Engineering resistance genes to gain effector recognition is emerging as an important step in attaining broad, durable resistance. We engineered potato resistance gene R3a to gain recognition of the virulent AVR3aEM effector form of Phytophthora infestans. Random mutagenesis, gene shuffling and site-directed mutagenesis of R3a were conducted to produce R3a* variants with gain of recognition towards AVR3aEM. Programmed cell death following gain of recognition was enhanced in iterative rounds of artificial evolution and neared levels observed for recognition of AVR3aKI by R3a. We demonstrated that R3a*-mediated recognition responses, like for R3a, are dependent on SGT1 and HSP90. In addition, this gain of response is associated with re-localisation of R3a* variants from the cytoplasm to late endosomes when co-expressed with either AVR3aKI or AVR3aEM a mechanism that was previously only seen for R3a upon co-infiltration with AVR3aKI. Similarly, AVR3aEM specifically re-localised to the same vesicles upon recognition by R3a* variants, but not with R3a. R3a and R3a* provide resistance to P. infestans isolates expressing AVR3aKI but not those homozygous for AVR3aEM.
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Affiliation(s)
- Sean Chapman
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
| | - Laura J. Stevens
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Dundee Effector Consortium, Invergowrie-Dundee, United Kingdom
| | - Petra C. Boevink
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Dundee Effector Consortium, Invergowrie-Dundee, United Kingdom
| | - Stefan Engelhardt
- Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Dundee Effector Consortium, Invergowrie-Dundee, United Kingdom
| | - Colin J. Alexander
- Biomathematics and Statistics Scotland, Invergowrie-Dundee, United Kingdom
| | - Brian Harrower
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
| | - Nicolas Champouret
- J.R. Simplot Company, Simplot Plant Sciences, Boise, Idaho, United States of America
| | - Kara McGeachy
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
| | - Pauline S. M. Van Weymers
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Dundee Effector Consortium, Invergowrie-Dundee, United Kingdom
| | - Xinwei Chen
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Dundee Effector Consortium, Invergowrie-Dundee, United Kingdom
| | - Paul R. J. Birch
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Division of Plant Sciences, University of Dundee at James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Dundee Effector Consortium, Invergowrie-Dundee, United Kingdom
| | - Ingo Hein
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie-Dundee, United Kingdom
- Dundee Effector Consortium, Invergowrie-Dundee, United Kingdom
- * E-mail:
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48
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Randall E, Young V, Sierotzki H, Scalliet G, Birch PRJ, Cooke DEL, Csukai M, Whisson SC. Sequence diversity in the large subunit of RNA polymerase I contributes to Mefenoxam insensitivity in Phytophthora infestans. Mol Plant Pathol 2014; 15:664-76. [PMID: 24521429 PMCID: PMC6638662 DOI: 10.1111/mpp.12124] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Phenylamide fungicides have been widely used for the control of oomycete-incited plant diseases for over 30 years. Insensitivity to this chemical class of fungicide was recorded early in its usage history, but the precise protein(s) conditioning insensitivity has proven difficult to determine. To determine the genetic basis of insensitivity and to inform strategies for the cloning of the gene(s) responsible, genetic crosses were established between Mefenoxam sensitive and intermediate insensitive isolates of Phytophthora infestans, the potato late blight pathogen. F1 progeny showed the expected semi-dominant phenotypes for Mefenoxam insensitivity and suggested the involvement of multiple loci, complicating the positional cloning of the gene(s) conditioning insensitivity to Mefenoxam. Instead, a candidate gene strategy was used, based on previous observations that the primary effect of phenylamide compounds is to inhibit ribosomal RNA synthesis. The subunits of RNA polymerase I (RNApolI) were sequenced from sensitive and insensitive isolates and F1 progeny. Single nucleotide polymorphisms (SNPs) specific to insensitive field isolates were identified in the gene encoding the large subunit of RNApolI. In a survey of field isolates, SNP T1145A (Y382F) showed an 86% association with Mefenoxam insensitivity. Isolates not showing this association belonged predominantly to one P. infestans genotype. The transfer of the 'insensitive' allele of RPA190 to a sensitive isolate yielded transgenic lines that were insensitive to Mefenoxam. These results demonstrate that sequence variation in RPA190 contributes to insensitivity to Mefenoxam in P. infestans.
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Affiliation(s)
- Eva Randall
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
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De Maayer P, Chan WY, Rubagotti E, Venter SN, Toth IK, Birch PRJ, Coutinho TA. Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts. BMC Genomics 2014; 15:404. [PMID: 24884520 PMCID: PMC4070556 DOI: 10.1186/1471-2164-15-404] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2013] [Accepted: 05/20/2014] [Indexed: 11/10/2022] Open
Abstract
Background Pantoea ananatis is found in a wide range of natural environments, including water, soil, as part of the epi- and endophytic flora of various plant hosts, and in the insect gut. Some strains have proven effective as biological control agents and plant-growth promoters, while other strains have been implicated in diseases of a broad range of plant hosts and humans. By analysing the pan-genome of eight sequenced P. ananatis strains isolated from different sources we identified factors potentially underlying its ability to colonize and interact with hosts in both the plant and animal Kingdoms. Results The pan-genome of the eight compared P. ananatis strains consisted of a core genome comprised of 3,876 protein coding sequences (CDSs) and a sizeable accessory genome consisting of 1,690 CDSs. We estimate that ~106 unique CDSs would be added to the pan-genome with each additional P. ananatis genome sequenced in the future. The accessory fraction is derived mainly from integrated prophages and codes mostly for proteins of unknown function. Comparison of the translated CDSs on the P. ananatis pan-genome with the proteins encoded on all sequenced bacterial genomes currently available revealed that P. ananatis carries a number of CDSs with orthologs restricted to bacteria associated with distinct hosts, namely plant-, animal- and insect-associated bacteria. These CDSs encode proteins with putative roles in transport and metabolism of carbohydrate and amino acid substrates, adherence to host tissues, protection against plant and animal defense mechanisms and the biosynthesis of potential pathogenicity determinants including insecticidal peptides, phytotoxins and type VI secretion system effectors. Conclusions P. ananatis has an ‘open’ pan-genome typical of bacterial species that colonize several different environments. The pan-genome incorporates a large number of genes encoding proteins that may enable P. ananatis to colonize, persist in and potentially cause disease symptoms in a wide range of plant and animal hosts. Electronic supplementary material The online version of this article (doi: 10.1186/1471-2164-15-404) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Pieter De Maayer
- Centre for Microbial Ecology and Genomics, University of Pretoria, Pretoria 0002, South Africa.
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McLellan H, Boevink PC, Armstrong MR, Pritchard L, Gomez S, Morales J, Whisson SC, Beynon JL, Birch PRJ. An RxLR effector from Phytophthora infestans prevents re-localisation of two plant NAC transcription factors from the endoplasmic reticulum to the nucleus. PLoS Pathog 2013; 9:e1003670. [PMID: 24130484 PMCID: PMC3795001 DOI: 10.1371/journal.ppat.1003670] [Citation(s) in RCA: 157] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2013] [Accepted: 08/15/2013] [Indexed: 12/20/2022] Open
Abstract
The potato late blight pathogen Phytophthora infestans secretes an array of effector proteins thought to act in its hosts by disarming defences and promoting pathogen colonisation. However, little is known about the host targets of these effectors and how they are manipulated by the pathogen. This work describes the identification of two putative membrane-associated NAC transcription factors (TF) as the host targets of the RxLR effector PITG_03192 (Pi03192). The effector interacts with NAC Targeted by Phytophthora (NTP) 1 and NTP2 at the endoplasmic reticulum (ER) membrane, where these proteins are localised. Transcripts of NTP1 and NTP2 rapidly accumulate following treatment with culture filtrate (CF) from in vitro grown P. infestans, which acts as a mixture of Phytophthora PAMPs and elicitors, but significantly decrease during P. infestans infection, indicating that pathogen activity may prevent their up-regulation. Silencing of NTP1 or NTP2 in the model host plant Nicotiana benthamiana increases susceptibility to P. infestans, whereas silencing of Pi03192 in P. infestans reduces pathogenicity. Transient expression of Pi03192 in planta restores pathogenicity of the Pi03192-silenced line. Moreover, colonisation by the Pi03192-silenced line is significantly enhanced on N. benthamiana plants in which either NTP1 or NTP2 have been silenced. StNTP1 and StNTP2 proteins are released from the ER membrane following treatment with P. infestans CF and accumulate in the nucleus, after which they are rapidly turned over by the 26S proteasome. In contrast, treatment with the defined PAMP flg22 fails to up-regulate NTP1 and NTP2, or promote re-localisation of their protein products to the nucleus, indicating that these events follow perception of a component of CF that appears to be independent of the FLS2/flg22 pathway. Importantly, Pi03192 prevents CF-triggered re-localisation of StNTP1 and StNTP2 from the ER into the nucleus, revealing a novel effector mode-of-action to promote disease progression.
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Affiliation(s)
- Hazel McLellan
- The Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
| | - Petra C. Boevink
- Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, United Kingdom
| | - Miles R. Armstrong
- The Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
| | - Leighton Pritchard
- Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Information and Computational Sciences, JHI, Invergowrie, Dundee, United Kingdom
| | - Sonia Gomez
- The Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Departamento de Ciencias Agronómicas, Universidad Nacional de Colombia, Sede Medellin, Medellin, Colombia
| | - Juan Morales
- Departamento de Ciencias Agronómicas, Universidad Nacional de Colombia, Sede Medellin, Medellin, Colombia
| | - Stephen C. Whisson
- Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, United Kingdom
| | - Jim L. Beynon
- Life Sciences and Systems Biology, University of Warwick, Coventry, United Kingdom
| | - Paul R. J. Birch
- The Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom
- Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee, United Kingdom
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