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Kausar A, Zahra N, Zahra H, Hafeez MB, Zafer S, Shahzadi A, Raza A, Djalovic I, Prasad PVV. Alleviation of drought stress through foliar application of thiamine in two varieties of pea ( Pisum sativum L.). PLANT SIGNALING & BEHAVIOR 2023; 18:2186045. [PMID: 37016728 PMCID: PMC10012936 DOI: 10.1080/15592324.2023.2186045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 02/20/2023] [Accepted: 02/22/2023] [Indexed: 06/19/2023]
Abstract
Drought stress poorly impacts many morphological and physio-biochemical processes in plants. Pea (Pisum sativum L.) plants are highly nutritious crops destined for human consumption; however, their productivity is threatened under drought stress. Thiamine (vitamin B1) is well-known essential micronutrient, acting as a cofactor in key metabolic processes. Therefore, this study was designed to examine the protective effect of foliar application of thiamine (0, 250, and 500 ppm) on two varieties of pea plants under drought stress. Here, we conducted the pot experiment at the Government College Women University, Faisalabad, to investigate the physio-biochemical and morphological traits of two pea varieties (sarsabz and metior) grown under drought stress and thiamine treatment. Drought stress was applied to plants after germination period of 1 month. Results showed that root fresh and dry weight, shoot fresh and dry weight, number of pods, leaf area, total soluble sugars, total phenolics, total protein contents, catalase, peroxidase, and mineral ions were reduced against drought stress. However, the application of thiamine (both 250 and 500 ppm) overcome the stress and also enhances these parameters, and significantly increases the antioxidant activities (catalase and peroxidase). Moreover, the performance of sarsabz was better under control and drought stress conditions than metior variety. In conclusion, the exogenous application of thiamine enabled the plants to withstand drought stress conditions by regulating several physiological and biochemical mechanisms. In agriculture, it is a great latent to alleviate the antagonistic impact of drought stress on crops through the foliar application of thiamine.
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Affiliation(s)
- Abida Kausar
- Department of Botany, Government College Women University, Faisalabad, Pakistan
| | - Noreen Zahra
- Department of Botany, Government College Women University, Faisalabad, Pakistan
- Department of Botany, University of Agriculture, Faisalabad, Pakistan
| | - Hina Zahra
- Department of Botany, Government College Women University, Faisalabad, Pakistan
| | | | - Sara Zafer
- Department of Botany, GC University, Faisalabad, Pakistan
| | - Abida Shahzadi
- Department of Economics, Government College University, Faisalabad, Pakistan
| | - Ali Raza
- College of Agriculture, Fujian Agriculture and Forestry University (FAFU), Fuzhou, China
| | - Ivica Djalovic
- Institute of Field and Vegetable Crops, National Institute of the Republic of Serbia, Novi Sad, Serbia
| | - PV Vara Prasad
- Department of Agronomy, Kansas State University, Manhattan, KS, USA
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Naheed R, Zahid M, Aqeel M, Maqsood MF, Kanwal H, Khalid N, Hashem M, Alamri S, Noman A. Mediation of Growth and Metabolism of Pisum sativum in Salt Stress Potentially Be Credited to Thiamine. JOURNAL OF SOIL SCIENCE AND PLANT NUTRITION 2022. [PMID: 0 DOI: 10.1007/s42729-022-00854-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
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Chen F, Aqeel M, Maqsood MF, Khalid N, Irshad MK, Ibrahim M, Akhter N, Afzaal M, Ma J, Hashem M, Alamri S, Noman A, Lam SS. Mitigation of lead toxicity in Vigna radiata genotypes by silver nanoparticles. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 308:119606. [PMID: 35716894 DOI: 10.1016/j.envpol.2022.119606] [Citation(s) in RCA: 30] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2022] [Revised: 05/12/2022] [Accepted: 06/08/2022] [Indexed: 06/15/2023]
Abstract
Heavy metal (HM) contamination of the soil through anthropogenic activities influences the living systems and drastically impacts food chain. This study examined the application of silver nanoparticles (AgNPs) in two genotypes (G1 and G2) of Mung bean (Vigna radiata) for ameliorating the Pb toxicity. Different doses of Pb (0, 25, 50 μM) were differentially tackled by AgNPs with the aim of ameliorating the plant attributes. Both genotypes displayed statistically significant quantitative and qualitative modulations for Pb tolerance. In G2, the most prominent increase in plant height (43.79%), fresh biomass (49.56%) and total chlorophyll (20%) was observed at L2 (AgNPs 10 mg/L) in comparison with the control. Overall, photosynthetic rate was increased by 26% in G2 at L6 (AgNPs 25 mg/L + Pb 25 μM). In addition, the results presented 78.5% increase in water use efficiency of G2 while G1 experienced a maximum internal CO2 concentration (209.8%) at L8 (Pb 50 μM). AgNPs triggered balanced uptake of minerals and improved growth of Vigna genotypes. 50 μM Pb was most hazardous and caused maximum reduction in growth of Vigna plants along with a significant suppression in photosynthetic activity, increase in MDA (199.7%) in G1 and H2O2 (292.8%) in G2. In comparison to control, maximum superoxide dismutase (376%), peroxidase (659.8%) and catalase (9.3%) activity was observed in G2 at L11. The application of AgNPs substantially enhanced plant growth and helped them in surviving well in absence as well as presence of Pb. G2 genotype exhibited substantial tolerance capability and revealed less impairment in the studied attributes than G1 and treatment of AgNPs i.e. 25 mg/L was the best level that yielded best results in both genotypes. The results demonstrate that AgNPs mediate response(s) of plants under Pb stress and particularly contributed to HM tolerance of plants and thus showing great promise for use in phytoremediation.
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Affiliation(s)
- Fu Chen
- School of Public Administration, Hohai University, Nanjing, 210098, China; Engineering Research Center of Ministry of Education for Mine Ecological Restoration, China University of Mining and Technology, Xuzhou, 221116, PR China
| | - Muhammad Aqeel
- State Key Laboratory of Grassland Agro-ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, 730000, Gansu, PR China
| | | | - Noreen Khalid
- Department of Botany, Government College Women University Sialkot, Sialkot, Pakistan
| | - Muhammad Kashif Irshad
- Department of Environmental Sciences, Government College University Faisalabad, Faisalabad, Pakistan
| | - Muhammad Ibrahim
- Department of Environmental Sciences, Government College University Faisalabad, Faisalabad, Pakistan
| | - Noreen Akhter
- Department of Botany, Government College Women University, Faisalabad, 38060, Pakistan
| | - Muhammad Afzaal
- School of Science, Engineering and Environment, University of Salford, Manchester, United Kingdom
| | - Jing Ma
- School of Public Administration, Hohai University, Nanjing, 210098, China; Engineering Research Center of Ministry of Education for Mine Ecological Restoration, China University of Mining and Technology, Xuzhou, 221116, PR China
| | - Mohamed Hashem
- Department of Biology, Faculty of Science, King Khalid University, Abha, 61413, Saudi Arabia; Assiut University, Faculty of Science, Botany and Microbiology Department, Assiut, 71516, Egypt
| | - Saad Alamri
- Department of Biology, Faculty of Science, King Khalid University, Abha, 61413, Saudi Arabia
| | - Ali Noman
- Department of Botany, Government College University, Faisalabad, Pakistan.
| | - Su Shiung Lam
- Higher Institution Centre of Excellence (HICoE), Institute of Tropical Aquaculture and Fisheries (AKUATROP), Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
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Liu Z, Farkas P, Wang K, Kohli M, Fitzpatrick TB. B vitamin supply in plants and humans: the importance of vitamer homeostasis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 111:662-682. [PMID: 35673947 PMCID: PMC9544542 DOI: 10.1111/tpj.15859] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 06/02/2022] [Accepted: 06/06/2022] [Indexed: 05/26/2023]
Abstract
B vitamins are a group of water-soluble micronutrients that are required in all life forms. With the lack of biosynthetic pathways, humans depend on dietary uptake of these compounds, either directly or indirectly, from plant sources. B vitamins are frequently given little consideration beyond their role as enzyme accessory factors and are assumed not to limit metabolism. However, it should be recognized that each individual B vitamin is a family of compounds (vitamers), the regulation of which has dedicated pathways. Moreover, it is becoming increasingly evident that individual family members have physiological relevance and should not be sidelined. Here, we elaborate on the known forms of vitamins B1 , B6 and B9 , their distinct functions and importance to metabolism, in both human and plant health, and highlight the relevance of vitamer homeostasis. Research on B vitamin metabolism over the past several years indicates that not only the total level of vitamins but also the oft-neglected homeostasis of the various vitamers of each B vitamin is essential to human and plant health. We briefly discuss the potential of plant biology studies in supporting human health regarding these B vitamins as essential micronutrients. Based on the findings of the past few years we conclude that research should focus on the significance of vitamer homeostasis - at the organ, tissue and subcellular levels - which could improve the health of not only humans but also plants, benefiting from cross-disciplinary approaches and novel technologies.
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Affiliation(s)
- Zeguang Liu
- Vitamins and Environmental Stress Responses in Plants, Department of Botany and Plant BiologyUniversity of GenevaQuai Ernest‐Ansermet 30CH‐1211Geneva 4Switzerland
| | - Peter Farkas
- Vitamins and Environmental Stress Responses in Plants, Department of Botany and Plant BiologyUniversity of GenevaQuai Ernest‐Ansermet 30CH‐1211Geneva 4Switzerland
| | - Kai Wang
- Vitamins and Environmental Stress Responses in Plants, Department of Botany and Plant BiologyUniversity of GenevaQuai Ernest‐Ansermet 30CH‐1211Geneva 4Switzerland
| | - Morgan‐Océane Kohli
- Vitamins and Environmental Stress Responses in Plants, Department of Botany and Plant BiologyUniversity of GenevaQuai Ernest‐Ansermet 30CH‐1211Geneva 4Switzerland
| | - Teresa B. Fitzpatrick
- Vitamins and Environmental Stress Responses in Plants, Department of Botany and Plant BiologyUniversity of GenevaQuai Ernest‐Ansermet 30CH‐1211Geneva 4Switzerland
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Gautam M, Chahota RK, Kumar D. Nuclear magnetic resonance-based chemical signature and nutritional discrimination of Macrotyloma uniflorum accessions from the alpine Himalayas. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2022; 102:707-715. [PMID: 34173242 DOI: 10.1002/jsfa.11401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Revised: 06/18/2021] [Accepted: 06/26/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Macrotyloma uniflorum (horsegram) is cultivated in the alpine Himalayas for its nutritional benefits. The chemical diversity of M. uniflorum has been explored by several research groups, but none has reported the chemical signature to monitor the identity and quality. To overcome quality control problems and provide more accurate chemotype information, proton nuclear magnetic resonance (1 H-NMR)-based chemical signature and tentative metabotype discrimination was studied. RESULTS Metabolites were identified by characteristic chemical shifts and their correlations in one-dimensional (1D) and two-dimensional (2D) nuclear magnetic resonance (NMR) experiments. The identifications were confirmed by reference standards, with in-house databases, and with public databases. From the analysis of seed samples from eight locations, NMR detected 46 diversified metabolites, including 18 amino acids, nine carbohydrates, three vitamins, seven flavonoids, and nine miscellaneous molecules (fatty acids/choline/phenolics/organic acids/sterols). These metabolites generated a single snapshot chemical signature for M. uniflorum. Greater content of identified metabolites was found at high elevations of 1829 m (55.78 g kg-1 ) followed by 1000-1150 m (19.30-17.23 g kg-1 ) and 1150-1450 m (7.33-13.41 g kg-1 ). Principal component analysis of samples revealed that chemotypes grouped into three distinct clusters. 'Cluster-3' was positively correlated with metabolites and found the best nutritionally enriched chemotype. CONCLUSIONS A proton nuclear magnetic resonance-based M. uniflorum chemical signature was generated for the first time. The environmental conditions of 1829 m were most suitable for obtaining nutritionally enriched M. uniflorum crops. Overall, this information could help in the conservation, quality control, product development, and agriculture inventions of M. uniflorum. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Manisha Gautam
- Department of Agriculture Biotechnology, CSK Himachal Pradesh Agricultural University, Palampur, India
| | - Rakesh Kumar Chahota
- Department of Agriculture Biotechnology, CSK Himachal Pradesh Agricultural University, Palampur, India
| | - Dinesh Kumar
- Chemical Technology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, India
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Mangel N, Fudge JB, Gruissem W, Fitzpatrick TB, Vanderschuren H. Natural Variation in Vitamin B 1 and Vitamin B 6 Contents in Rice Germplasm. FRONTIERS IN PLANT SCIENCE 2022; 13:856880. [PMID: 35444674 PMCID: PMC9014206 DOI: 10.3389/fpls.2022.856880] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Accepted: 02/24/2022] [Indexed: 05/03/2023]
Abstract
Insufficient dietary intake of micronutrients contributes to the onset of deficiencies termed hidden hunger-a global health problem affecting approximately 2 billion people. Vitamin B1 (thiamine) and vitamin B6 (pyridoxine) are essential micronutrients because of their roles as enzymatic cofactors in all organisms. Metabolic engineering attempts to biofortify rice endosperm-a poor source of several micronutrients leading to deficiencies when consumed monotonously-have led to only minimal improvements in vitamin B1 and B6 contents. To determine if rice germplasm could be exploited for biofortification of rice endosperm, we screened 59 genetically diverse accessions under greenhouse conditions for variation in vitamin B1 and vitamin B6 contents across three tissue types (leaves, unpolished and polished grain). Accessions from low, intermediate and high vitamin categories that had similar vitamin levels in two greenhouse experiments were chosen for in-depth vitamer profiling and selected biosynthesis gene expression analyses. Vitamin B1 and B6 contents in polished seeds varied almost 4-fold. Genes encoding select vitamin B1 and B6 biosynthesis de novo enzymes (THIC for vitamin B1, PDX1.3a-c and PDX2 for vitamin B6) were differentially expressed in leaves across accessions contrasting in their respective vitamin contents. These expression levels did not correlate with leaf and unpolished seed vitamin contents, except for THIC expression in leaves that was positively correlated with total vitamin B1 contents in polished seeds. This study expands our knowledge of diversity in micronutrient traits in rice germplasm and provides insights into the expression of genes for vitamin B1 and B6 biosynthesis in rice.
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Affiliation(s)
- Nathalie Mangel
- Plant Biotechnology, Department of Biology, ETH Zurich, Zurich, Switzerland
| | - Jared B. Fudge
- Vitamin & Environmental Stress Responses in Plants, Department of Botany and Plant Biology, Université de Genève, Geneva, Switzerland
| | - Wilhelm Gruissem
- Plant Biotechnology, Department of Biology, ETH Zurich, Zurich, Switzerland
- Biotechnology Center, National Chung Hsing University, Taichung, Taiwan
- *Correspondence: Wilhelm Gruissem,
| | - Teresa B. Fitzpatrick
- Vitamin & Environmental Stress Responses in Plants, Department of Botany and Plant Biology, Université de Genève, Geneva, Switzerland
- Teresa B. Fitzpatrick,
| | - Hervé Vanderschuren
- Plant Biotechnology, Department of Biology, ETH Zurich, Zurich, Switzerland
- Plant Genetics Laboratory, TERRA Teaching and Research Center, Gembloux Agro-Bio Tech, Université de Liège, Gembloux, Belgium
- Hervé Vanderschuren,
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Genic microsatellite marker characterization and development in little millet (Panicum sumatrense) using transcriptome sequencing. Sci Rep 2021; 11:20620. [PMID: 34663808 PMCID: PMC8523711 DOI: 10.1038/s41598-021-00100-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Accepted: 09/29/2021] [Indexed: 11/08/2022] Open
Abstract
Little millet is a climate-resilient and high-nutrient value plant. The lack of molecular markers severely limits the adoption of modern genomic approaches in millet breeding studies. Here the transcriptome of three samples were sequenced. A total of 4443 genic-SSR motifs were identified in 30,220 unigene sequences. SSRs were found at a rate of 12.25 percent, with an average of one SSR locus per 10 kb. Among different repeat motifs, tri-nucleotide repeat (66.67) was the most abundant one, followed by di- (27.39P), and tetra- (3.83P) repeats. CDS contained fewer motifs with the majority of tri-nucleotides, while 3' and 5' UTR carry more motifs but have shorter repeats. Functional annotation of unigenes containing microsatellites, revealed that most of them were linked to metabolism, gene expression regulation, and response to environmental stresses. Fifty primers were randomly chosen and validated in five little millet and 20 minor millet genotypes; 48% showed polymorphism, with a high transferability (70%) rate. Identified microsatellites can be a noteworthy resource for future research into QTL-based breeding, genetic resource conservation, MAS selection, and evolutionary genetics.
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Joshi J, Mimura M, Suzuki M, Wu S, Gregory JF, Hanson AD, McCarty DR. The Thiamin-Requiring 3 Mutation of Arabidopsis 5-Deoxyxylulose-Phosphate Synthase 1 Highlights How the Thiamin Economy Impacts the Methylerythritol 4-Phosphate Pathway. FRONTIERS IN PLANT SCIENCE 2021; 12:721391. [PMID: 34421975 PMCID: PMC8377734 DOI: 10.3389/fpls.2021.721391] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Accepted: 07/14/2021] [Indexed: 06/01/2023]
Abstract
The thiamin-requiring mutants of Arabidopsis have a storied history as a foundational model for biochemical genetics in plants and have illuminated the central role of thiamin in metabolism. Recent integrative genetic and biochemical analyses of thiamin biosynthesis and utilization imply that leaf metabolism normally operates close to thiamin-limiting conditions. Thus, the mechanisms that allocate thiamin-diphosphate (ThDP) cofactor among the diverse thiamin-dependent enzymes localized in plastids, mitochondria, peroxisomes, and the cytosol comprise an intricate thiamin economy. Here, we show that the classical thiamin-requiring 3 (th3) mutant is a point mutation in plastid localized 5-deoxyxylulose synthase 1 (DXS1), a key regulated enzyme in the methylerythritol 4-phosphate (MEP) isoprene biosynthesis pathway. Substitution of a lysine for a highly conserved glutamate residue (E323) located at the subunit interface of the homodimeric enzyme conditions a hypomorphic phenotype that can be rescued by supplying low concentrations of thiamin in the medium. Analysis of leaf thiamin vitamers showed that supplementing the medium with thiamin increased total ThDP content in both wild type and th3 mutant plants, supporting a hypothesis that the mutant DXS1 enzyme has a reduced affinity for the ThDP cofactor. An unexpected upregulation of a suite of biotic-stress-response genes associated with accumulation of downstream MEP intermediate MEcPP suggests that th3 causes mis-regulation of DXS1 activity in thiamin-supplemented plants. Overall, these results highlight that the central role of ThDP availability in regulation of DXS1 activity and flux through the MEP pathway.
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Affiliation(s)
- Jaya Joshi
- Department of Horticultural Sciences, University of Florida, Gainesville, FL, United States
| | - Manaki Mimura
- Plant Cytogenetics, Department of Gene Function and Phenomics, National Institute of Genetics, Mishima, Japan
| | - Masaharu Suzuki
- Department of Horticultural Sciences, University of Florida, Gainesville, FL, United States
| | - Shan Wu
- Department of Horticultural Sciences, University of Florida, Gainesville, FL, United States
| | - Jesse F. Gregory
- Department Food Science and Human Nutrition, University of Florida, Gainesville, FL, United States
| | - Andrew D. Hanson
- Department of Horticultural Sciences, University of Florida, Gainesville, FL, United States
| | - Donald R. McCarty
- Department of Horticultural Sciences, University of Florida, Gainesville, FL, United States
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Li Y, Yang C, Ahmad H, Maher M, Fang C, Luo J. Benefiting others and self: Production of vitamins in plants. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2021; 63:210-227. [PMID: 33289302 DOI: 10.1111/jipb.13047] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2020] [Accepted: 11/26/2020] [Indexed: 06/12/2023]
Abstract
Vitamins maintain growth and development in humans, animals, and plants. Because plants serve as essential producers of vitamins, increasing the vitamin contents in plants has become a goal of crop breeding worldwide. Here, we begin with a summary of the functions of vitamins. We then review the achievements to date in elucidating the molecular mechanisms underlying how vitamins are synthesized, transported, and regulated in plants. We also stress the exploration of variation in vitamins by the use of forward genetic approaches, such as quantitative trait locus mapping and genome-wide association studies. Overall, we conclude that exploring the diversity of vitamins could provide new insights into plant metabolism and crop breeding.
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Affiliation(s)
- Yufei Li
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | - Chenkun Yang
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | - Hasan Ahmad
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | - Mohamed Maher
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | - Chuanying Fang
- College of Tropical Crops, Hainan University, Haikou, 570228, China
| | - Jie Luo
- College of Tropical Crops, Hainan University, Haikou, 570228, China
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Hofmann M, Loubéry S, Fitzpatrick TB. On the nature of thiamine triphosphate in Arabidopsis. PLANT DIRECT 2020; 4:e00258. [PMID: 32885135 PMCID: PMC7456500 DOI: 10.1002/pld3.258] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 07/27/2020] [Accepted: 07/29/2020] [Indexed: 05/02/2023]
Abstract
Vitamin B1 is a family of molecules, the most renowned member of which is diphosphorylated thiamine (TDP)-a coenzyme vital for the activity of key enzymes of energy metabolism. Triphosphorylated thiamine derivatives also exist within this family, specifically thiamine triphosphate (TTP) and adenosine thiamine triphosphate (ATTP). They have been investigated primarily in mammalian cells and are thought to act as metabolic messengers but have not received much attention in plants. In this study, we set out to examine for the presence of these triphosphorylated thiamine derivatives in Arabidopsis. We could find TTP in Arabidopsis under standard growth conditions, but we could not detect ATTP. Interestingly, TTP is found primarily in shoot tissue. Drivers of TTP synthesis are light intensity, the proton motive force, as well as TDP content. In plants, TTP accumulates in the organellar powerhouses, the plastids, and mitochondria. Furthermore, in contrast to other B1 vitamers, there are strong oscillations in tissue levels of TTP levels over diel periods peaking early during the light period. The elevation of TTP levels during the day appears to be coupled to a photosynthesis-driven process. We propose that TTP may signify TDP sufficiency, particularly in the organellar powerhouses, and discuss our findings in relation to its role.
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Affiliation(s)
- Manuel Hofmann
- Department of Botany and Plant BiologyUniversity of GenevaGenevaSwitzerland
| | - Sylvain Loubéry
- Department of Botany and Plant BiologyUniversity of GenevaGenevaSwitzerland
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Noordally ZB, Trichtinger C, Dalvit I, Hofmann M, Roux C, Zamboni N, Pourcel L, Gas-Pascual E, Gisler A, Fitzpatrick TB. The coenzyme thiamine diphosphate displays a daily rhythm in the Arabidopsis nucleus. Commun Biol 2020; 3:209. [PMID: 32372067 PMCID: PMC7200797 DOI: 10.1038/s42003-020-0927-z] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2019] [Accepted: 03/25/2020] [Indexed: 12/27/2022] Open
Abstract
In plants, metabolic homeostasis—the driving force of growth and development—is achieved through the dynamic behavior of a network of enzymes, many of which depend on coenzymes for activity. The circadian clock is established to influence coordination of supply and demand of metabolites. Metabolic oscillations independent of the circadian clock, particularly at the subcellular level is unexplored. Here, we reveal a metabolic rhythm of the essential coenzyme thiamine diphosphate (TDP) in the Arabidopsis nucleus. We show there is temporal separation of the clock control of cellular biosynthesis and transport of TDP at the transcriptional level. Taking advantage of the sole reported riboswitch metabolite sensor in plants, we show that TDP oscillates in the nucleus. This oscillation is a function of a light-dark cycle and is independent of circadian clock control. The findings are important to understand plant fitness in terms of metabolite rhythms. Noordally et al. show that the essential coenzyme thiamine diphosphate exhibits a daily rhythm in the Arabidopsis nucleus, which is driven by light-dark cycles and not by the circadian clock. This study provides insight into our understanding of the optimization of plant fitness.
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Affiliation(s)
- Zeenat B Noordally
- Department of Botany and Plant Biology, University of Geneva, 1211, Geneva, Switzerland
| | - Celso Trichtinger
- Department of Botany and Plant Biology, University of Geneva, 1211, Geneva, Switzerland
| | - Ivan Dalvit
- Department of Botany and Plant Biology, University of Geneva, 1211, Geneva, Switzerland
| | - Manuel Hofmann
- Department of Botany and Plant Biology, University of Geneva, 1211, Geneva, Switzerland
| | - Céline Roux
- Department of Botany and Plant Biology, University of Geneva, 1211, Geneva, Switzerland
| | - Nicola Zamboni
- Institute of Molecular Systems Biology, ETH Zurich, 8093, Zurich, Switzerland
| | - Lucille Pourcel
- Department of Botany and Plant Biology, University of Geneva, 1211, Geneva, Switzerland
| | - Elisabet Gas-Pascual
- Department of Botany and Plant Biology, University of Geneva, 1211, Geneva, Switzerland
| | - Alexandra Gisler
- Department of Botany and Plant Biology, University of Geneva, 1211, Geneva, Switzerland
| | - Teresa B Fitzpatrick
- Department of Botany and Plant Biology, University of Geneva, 1211, Geneva, Switzerland.
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Ascorbate and Thiamin: Metabolic Modulators in Plant Acclimation Responses. PLANTS 2020; 9:plants9010101. [PMID: 31941157 PMCID: PMC7020166 DOI: 10.3390/plants9010101] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Revised: 01/09/2020] [Accepted: 01/10/2020] [Indexed: 12/12/2022]
Abstract
Cell compartmentalization allows incompatible chemical reactions and localised responses to occur simultaneously, however, it also requires a complex system of communication between compartments in order to maintain the functionality of vital processes. It is clear that multiple such signals must exist, yet little is known about the identity of the key players orchestrating these interactions or about the role in the coordination of other processes. Mitochondria and chloroplasts have a considerable number of metabolites in common and are interdependent at multiple levels. Therefore, metabolites represent strong candidates as communicators between these organelles. In this context, vitamins and similar small molecules emerge as possible linkers to mediate metabolic crosstalk between compartments. This review focuses on two vitamins as potential metabolic signals within the plant cell, vitamin C (L-ascorbate) and vitamin B1 (thiamin). These two vitamins demonstrate the importance of metabolites in shaping cellular processes working as metabolic signals during acclimation processes. Inferences based on the combined studies of environment, genotype, and metabolite, in order to unravel signaling functions, are also highlighted.
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Kaya C, Aslan M. Hydrogen sulphide partly involves in thiamine-induced tolerance to cadmium toxicity in strawberry (Fragaria x ananassa Duch) plants. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:941-953. [PMID: 31820241 DOI: 10.1007/s11356-019-07056-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2019] [Accepted: 11/13/2019] [Indexed: 05/24/2023]
Abstract
Although thiamine (THI) and hydrogen sulphide (H2S) both have widely been tested in the plant under stress conditions, cross talk between THI and H2S in the acquisition of cadmium (Cd) stress tolerance needs to be studied. So, an experiment was designed to study the participation of endogenous H2S in THI-induced tolerance to Cd stress in strawberry plants. A foliar spray solution containing THI (50 mg L-1) was sprayed once a week for 4 weeks to the foliage of strawberry plants under Cd stress (1.0 mM CdCl2). The plant dry weight, total chlorophyll, maximum efficiency of PSII (Fv/Fm), leaf potassium (K+) and calcium (Ca2+) as well as leaf water potential were significantly reduced, but the proline, ascorbate (AsA), glutathione (GSH), malondialdehyde (MDA), hydrogen peroxide (H2O2), electron leakage (EL) and leaf Cd as well as endogenous H2S and NO were increased by Cd stress. Application of THI alleviated the oxidative damage due to Cd stress and caused a further elevation in endogenous H2S and NO contents. Remarkably, THI-induced Cd stress tolerance was further improved by addition of sodium hydrosulfide (0.2 mM NaHS), a H2S donor. To get an insight whether or not H2S involved in THI-improved tolerance to Cd toxicity in strawberry plants, an H2S scavenger, hypotaurine (HT 0.1 mM), was supplied along with the THI and NaHS treatments. THI-improved tolerance to Cd stress was partly reversed by HT by reducing leaf H2S and NO to the level and above of these under Cd toxicity alone, respectively. The findings evidently showed that leaf H2S and NO together involved in induced tolerance to Cd toxicity by THI. This evidence was also proved by the partly increases in MDA and H2O2 and decreases in antioxidant defence enzymes such as superoxide dismutase, catalase and peroxidase as well as the plant biomass and partly enhanced leaf Cd content by exogenous applied HT along with THI.
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Affiliation(s)
- Cengiz Kaya
- Soil Science and Plant Nutrition Department, Agriculture Faculty, Harran University, Sanliurfa, Turkey.
| | - Mustafa Aslan
- Biology Department, Education Faculty, Harran University, Sanliurfa, Turkey
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Mangel N, Fudge JB, Li K, Wu T, Tohge T, Fernie AR, Szurek B, Fitzpatrick TB, Gruissem W, Vanderschuren H. Enhancement of vitamin B 6 levels in rice expressing Arabidopsis vitamin B 6 biosynthesis de novo genes. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 99:1047-1065. [PMID: 31063672 PMCID: PMC6852651 DOI: 10.1111/tpj.14379] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2018] [Revised: 03/19/2019] [Accepted: 04/10/2019] [Indexed: 05/06/2023]
Abstract
Vitamin B6 (pyridoxine) is vital for key metabolic reactions and reported to have antioxidant properties in planta. Therefore, enhancement of vitamin B6 content has been hypothesized to be a route to improve resistance to biotic and abiotic stresses. Most of the current studies on vitamin B6 in plants are on eudicot species, with monocots remaining largely unexplored. In this study, we investigated vitamin B6 biosynthesis in rice, with a view to examining the feasibility and impact of enhancing vitamin B6 levels. Constitutive expression in rice of two Arabidopsis thaliana genes from the vitamin B6 biosynthesis de novo pathway, AtPDX1.1 and AtPDX2, resulted in a considerable increase in vitamin B6 in leaves (up to 28.3-fold) and roots (up to 12-fold), with minimal impact on general growth. Rice lines accumulating high levels of vitamin B6 did not display enhanced tolerance to abiotic stress (salt) or biotic stress (resistance to Xanthomonas oryzae infection). While a significant increase in vitamin B6 content could also be achieved in rice seeds (up to 3.1-fold), the increase was largely due to its accumulation in seed coat and embryo tissues, with little enhancement observed in the endosperm. However, seed yield was affected in some vitamin B6 -enhanced lines. Notably, expression of the transgenes did not affect the expression of the endogenous rice PDX genes. Intriguingly, despite transgene expression in leaves and seeds, the corresponding proteins were only detectable in leaves and could not be observed in seeds, possibly pointing to a mode of regulation in this organ.
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Affiliation(s)
- Nathalie Mangel
- Plant Biotechnology, Department of BiologyETH ZürichZürichSwitzerland
| | - Jared B. Fudge
- Department of Botany and Plant BiologyUniversity of GenevaGeneva1211Switzerland
| | - Kuan‐Te Li
- Plant Biotechnology, Department of BiologyETH ZürichZürichSwitzerland
| | - Ting‐Ying Wu
- Plant Biotechnology, Department of BiologyETH ZürichZürichSwitzerland
| | - Takayuki Tohge
- Max‐Planck‐Institute for Molecular Plant PhysiologyPotsdam‐Gölm14476Germany
- Present address:
Graduate School of Biological SciencesNara Institute of Science and TechnologyIkomaNara630‐0192Japan
| | - Alisdair R. Fernie
- Max‐Planck‐Institute for Molecular Plant PhysiologyPotsdam‐Gölm14476Germany
| | - Boris Szurek
- IRDCiradUniversity of MontpellierIPMEMontpellier34394France
| | | | - Wilhelm Gruissem
- Plant Biotechnology, Department of BiologyETH ZürichZürichSwitzerland
- Advanced Plant Biotechnology CenterNational Chung Hsing UniversityTaichung City40227Taiwan
| | - Hervé Vanderschuren
- Plant Biotechnology, Department of BiologyETH ZürichZürichSwitzerland
- Plant Genetics LabTERRA Research and Teaching CentreGembloux Agro BioTechUniversity of LiègeGembloux5030Belgium
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Robinson GC, Kaufmann M, Roux C, Martinez-Font J, Hothorn M, Thore S, Fitzpatrick TB. Crystal structure of the pseudoenzyme PDX1.2 in complex with its cognate enzyme PDX1.3: a total eclipse. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY 2019; 75:400-415. [PMID: 30988257 DOI: 10.1107/s2059798319002912] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2018] [Accepted: 02/25/2019] [Indexed: 11/10/2022]
Abstract
Pseudoenzymes have burst into the limelight recently as they provide another dimension to regulation of cellular protein activity. In the eudicot plant lineage, the pseudoenzyme PDX1.2 and its cognate enzyme PDX1.3 interact to regulate vitamin B6 biosynthesis. This partnership is important for plant fitness during environmental stress, in particular heat stress. PDX1.2 increases the catalytic activity of PDX1.3, with an overall increase in vitamin B6 biosynthesis. However, the mechanism by which this is achieved is not known. In this study, the Arabidopsis thaliana PDX1.2-PDX1.3 complex was crystallized in the absence and presence of ligands, and attempts were made to solve the X-ray structures. Three PDX1.2-PDX1.3 complex structures are presented: the PDX1.2-PDX1.3 complex as isolated, PDX1.2-PDX1.3-intermediate (in the presence of substrates) and a catalytically inactive complex, PDX1.2-PDX1.3-K97A. Data were also collected from a crystal of a selenomethionine-substituted complex, PDX1.2-PDX1.3-SeMet. In all cases the protein complexes assemble as dodecamers, similar to the recently reported individual PDX1.3 homomer. Intriguingly, the crystals of the protein complex are statistically disordered owing to the high degree of structural similarity of the individual PDX1 proteins, such that the resulting configuration is a composite of both proteins. Despite the differential methionine content, selenomethionine substitution of the PDX1.2-PDX1.3 complex did not resolve the problem. Furthermore, a comparison of the catalytically competent complex with a noncatalytic complex did not facilitate the resolution of the individual proteins. Interestingly, another catalytic lysine in PDX1.3 (Lys165) that pivots between the two active sites in PDX1 (P1 and P2), and the corresponding glutamine (Gln169) in PDX1.2, point towards P1, which is distinctive to the initial priming for catalytic action. This state was previously only observed upon trapping PDX1.3 in a catalytically operational state, as Lys165 points towards P2 in the resting state. Overall, the study shows that the integration of PDX1.2 into a heteromeric dodecamer assembly with PDX1.3 does not cause a major structural deviation from the overall architecture of the homomeric complex. Nonetheless, the structure of the PDX1.2-PDX1.3 complex highlights enhanced flexibility in key catalytic regions for the initial steps of vitamin B6 biosynthesis. This report highlights what may be an intrinsic limitation of X-ray crystallography in the structural investigation of pseudoenzymes.
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Affiliation(s)
- Graham C Robinson
- Department of Botany and Plant Biology, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva, Switzerland
| | - Markus Kaufmann
- Department of Botany and Plant Biology, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva, Switzerland
| | - Céline Roux
- Department of Botany and Plant Biology, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva, Switzerland
| | - Jacobo Martinez-Font
- Department of Botany and Plant Biology, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva, Switzerland
| | - Michael Hothorn
- Department of Botany and Plant Biology, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva, Switzerland
| | - Stéphane Thore
- Department of Molecular Biology, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva, Switzerland
| | - Teresa B Fitzpatrick
- Department of Botany and Plant Biology, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva, Switzerland
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Evidence that the metabolite repair enzyme NAD(P)HX epimerase has a moonlighting function. Biosci Rep 2018; 38:BSR20180223. [PMID: 29654173 PMCID: PMC5938422 DOI: 10.1042/bsr20180223] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2018] [Revised: 04/04/2018] [Accepted: 04/09/2018] [Indexed: 11/25/2022] Open
Abstract
NAD(P)H-hydrate epimerase (EC 5.1.99.6) is known to help repair NAD(P)H hydrates (NAD(P)HX), which are damage products existing as R and S epimers. The S epimer is reconverted to NAD(P)H by a dehydratase; the epimerase facilitates epimer interconversion. Epimerase deficiency in humans causes a lethal disorder attributed to NADHX accumulation. However, bioinformatic evidence suggest caution about this attribution by predicting that the epimerase has a second function connected to vitamin B6 (pyridoxal 5′-phosphate and related compounds). Specifically, (i) the epimerase is fused to a B6 salvage enzyme in plants, (ii) epimerase genes cluster on the chromosome with B6-related genes in bacteria, and (iii) epimerase and B6-related genes are coexpressed in yeast and Arabidopsis. The predicted second function was explored in Escherichia coli, whose epimerase and dehydratase are fused and encoded by yjeF. The putative NAD(P)HX epimerase active site has a conserved lysine residue (K192 in E. coli YjeF). Changing this residue to alanine cut in vitro epimerase activity by ≥95% but did not affect dehydratase activity. Mutant cells carrying the K192A mutation had essentially normal NAD(P)HX dehydratase activity and NAD(P)HX levels, showing that the mutation had little impact on NAD(P)HX repair in vivo. However, these cells showed metabolome changes, particularly in amino acids, which exceeded those in cells lacking the entire yjeF gene. The K192A mutant cells also had reduced levels of ‘free’ (i.e. weakly bound or unbound) pyridoxal 5'-phosphate. These results provide circumstantial evidence that the epimerase has a metabolic function beyond NAD(P)HX repair and that this function involves vitamin B6.
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Minhas AP, Tuli R, Puri S. Pathway Editing Targets for Thiamine Biofortification in Rice Grains. FRONTIERS IN PLANT SCIENCE 2018; 9:975. [PMID: 30042775 PMCID: PMC6048418 DOI: 10.3389/fpls.2018.00975] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2018] [Accepted: 06/15/2018] [Indexed: 05/21/2023]
Abstract
Thiamine deficiency is common in populations consuming polished rice as a major source of carbohydrates. Thiamine is required to synthesize thiamine pyrophosphate (TPP), an essential cofactor of enzymes of central metabolism. Its biosynthesis pathway has been partially elucidated and the effect of overexpression of a few genes such as thi1 and thiC, on thiamine accumulation in rice has been reported. Based on current knowledge, this review focuses on the potential of gene editing in metabolic engineering of thiamine biosynthesis pathway to improve thiamine in rice grains. Candidate genes, suitable for modification of the structural part to evolve more efficient versions of enzymes in the pathway, are discussed. For example, adjacent cysteine residues may be introduced in the catalytic domain of thi4 to improve the turn over activity of thiamine thiazole synthase 2. Motif specific editing to modify promoter regulatory regions of genes is discussed to modulate gene expression. Editing cis acting regulatory elements in promoter region can shift the expression of transporters and thiamine binding proteins to endosperm. This can enhance dietary availability of thiamine from rice grains. Differential transcriptomics on rice varieties with contrasting grain thiamine and functional genomic studies will identify more strategic targets for editing in future. Developing functionally enhanced foods by biofortification is a sustainable approach to make diets wholesome.
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Hayashi M, Tanaka M, Yamamoto S, Nakagawa T, Kanai M, Anegawa A, Ohnishi M, Mimura T, Nishimura M. Plastidial Folate Prevents Starch Biosynthesis Triggered by Sugar Influx into Non-Photosynthetic Plastids of Arabidopsis. PLANT & CELL PHYSIOLOGY 2017; 58:1328-1338. [PMID: 28586467 PMCID: PMC5921527 DOI: 10.1093/pcp/pcx076] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2017] [Accepted: 05/16/2017] [Indexed: 05/22/2023]
Abstract
Regulation of sucrose-starch interconversion in plants is important to maintain energy supplies necessary for viability and growth. Arabidopsis mutants were screened for aberrant responses to sucrose to identify candidates with a defect in the regulation of starch biosynthesis. One such mutant, fpgs1-4, accumulated substantial amounts of starch in non-photosynthetic cells. Dark-grown mutant seedlings exhibited shortened hypocotyls and accumulated starch in etioplasts when supplied with exogenous sucrose/glucose. Similar starch accumulation from exogenous sucrose was observed in mutant chloroplasts, when photosynthesis was prevented by organ culture in darkness. Molecular genetic analyses revealed that the mutant was defective in plastidial folylpolyglutamate synthetase, one of the enzymes engaged in folate biosynthesis. Active folate derivatives are important biomolecules that function as cofactors for a variety of enzymes. Exogenously supplied 5-formyl-tetrahydrofolate abrogated the mutant phenotypes, indicating that the fpgs1-4 mutant produced insufficient folate derivative levels. In addition, the antifolate agents methotrexate and 5-fluorouracil induced starch accumulation from exogenously supplied sucrose in dark-grown seedlings of wild-type Arabidopsis. These results indicate that plastidial folate suppresses starch biosynthesis triggered by sugar influx into non-photosynthetic cells, demonstrating a hitherto unsuspected link between plastidial folate and starch metabolism.
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Affiliation(s)
- Makoto Hayashi
- Department of Bioscience, Nagahama Institute of Bioscience and Technology, Tamura 1266, Nagahama, Shiga 526-0829, Japan
- Corresponding author: E-mail,: ; Fax, +81-749-64-8101
| | - Mina Tanaka
- Department of Cell Biology, National Institute for Basic Biology, Okazaki 444-8585, Japan
| | - Saki Yamamoto
- Department of Bioscience, Nagahama Institute of Bioscience and Technology, Tamura 1266, Nagahama, Shiga 526-0829, Japan
| | - Taro Nakagawa
- Department of Bioscience, Nagahama Institute of Bioscience and Technology, Tamura 1266, Nagahama, Shiga 526-0829, Japan
| | - Masatake Kanai
- Department of Cell Biology, National Institute for Basic Biology, Okazaki 444-8585, Japan
| | - Aya Anegawa
- Department of Biology, Graduate School of Science, Kobe University, Rokkodai 1-1, Nada-ku, 657-8501, Japan
| | - Miwa Ohnishi
- Department of Biology, Graduate School of Science, Kobe University, Rokkodai 1-1, Nada-ku, 657-8501, Japan
| | - Tetsuro Mimura
- Department of Biology, Graduate School of Science, Kobe University, Rokkodai 1-1, Nada-ku, 657-8501, Japan
| | - Mikio Nishimura
- Department of Cell Biology, National Institute for Basic Biology, Okazaki 444-8585, Japan
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19
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Hsieh WY, Liao JC, Wang HT, Hung TH, Tseng CC, Chung TY, Hsieh MH. The Arabidopsis thiamin-deficient mutant pale green1 lacks thiamin monophosphate phosphatase of the vitamin B 1 biosynthesis pathway. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017; 91:145-157. [PMID: 28346710 DOI: 10.1111/tpj.13552] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2017] [Revised: 03/20/2017] [Accepted: 03/21/2017] [Indexed: 05/24/2023]
Abstract
Thiamin diphosphate (TPP, vitamin B1 ) is an essential coenzyme present in all organisms. Animals obtain TPP from their diets, but plants synthesize TPPde novo. We isolated and characterized an Arabidopsis pale green1 (pale1) mutant that contained higher concentrations of thiamin monophosphate (TMP) and less thiamin and TPP than the wild type. Supplementation with thiamin, but not the thiazole and pyrimidine precursors, rescued the mutant phenotype, indicating that the pale1 mutant is a thiamin-deficient mutant. Map-based cloning and whole-genome sequencing revealed that the pale1 mutant has a mutation in At5g32470 encoding a TMP phosphatase of the TPP biosynthesis pathway. We further confirmed that the mutation of At5g32470 is responsible for the mutant phenotypes by complementing the pale1 mutant with constructs overexpressing full-length At5g32470. Most plant TPP biosynthetic enzymes are located in the chloroplasts and cytosol, but At5g32470-GFP localized to the mitochondrion of the root, hypocotyl, mesophyll and guard cells of the 35S:At5g32470-GFP complemented plants. The subcellular localization of a functional TMP phosphatase suggests that the complete vitamin B1 biosynthesis pathway may involve the chloroplasts, mitochondria and cytosol in plants. Analysis of PALE1 promoter-uidA activity revealed that PALE1 is mainly expressed in vascular tissues of Arabidopsis seedlings. Quantitative RT-PCR analysis of TPP biosynthesis genes and genes encoding the TPP-dependent enzymes pyruvate dehydrogenase, α-ketoglutarate dehydrogenase and transketolase revealed that the transcript levels of these genes were upregulated in the pale1 mutant. These results suggest that endogenous levels of TPP may affect the expression of genes involved in TPP biosynthesis and TPP-dependent enzymes.
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Affiliation(s)
- Wei-Yu Hsieh
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan
| | - Jo-Chien Liao
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan
| | - Hsin-Tzu Wang
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan
| | - Tzu-Huan Hung
- Biotechnology Division, Taiwan Agricultural Research Institute, Taichung, 41362, Taiwan
| | - Ching-Chih Tseng
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan
| | - Tsui-Yun Chung
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan
| | - Ming-Hsiun Hsieh
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 11529, Taiwan
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20
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Mangel N, Fudge JB, Fitzpatrick TB, Gruissem W, Vanderschuren H. Vitamin B1 diversity and characterization of biosynthesis genes in cassava. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:3351-3363. [PMID: 28859374 PMCID: PMC5853225 DOI: 10.1093/jxb/erx196] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2017] [Accepted: 05/22/2017] [Indexed: 05/06/2023]
Abstract
Vitamin B1, which consists of the vitamers thiamin and its phosphorylated derivatives, is an essential micronutrient for all living organisms because it is required as a metabolic cofactor in several enzymatic reactions. Genetic diversity of vitamin B1 biosynthesis and accumulation has not been investigated in major crop species other than rice and potato. We analyzed cassava germplasm for accumulation of B1 vitamers. Vitamin B1 content in leaves and roots of 41 cassava accessions showed significant variation between accessions. HPLC analyses of B1 vitamers revealed distinct profiles in cassava leaves and storage roots, with nearly equal relative levels of thiamin pyrophosphate and thiamin monophosphate in leaves, but mostly thiamin pyrophosphate in storage roots. Unusually, the cassava genome has two genes encoding the 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate synthase, THIC (MeTHIC1 and MeTHIC2), both of which carry a riboswitch in the 3'-UTR, as well as the adenylated thiazole synthase, THI1 (MeTHI1a and MeTHI1b). The THIC and THI1 genes are expressed at very low levels in storage roots compared with the accumulation of vitamin B1, indicating only limited biosynthesis de novo therein. In leaves, vitamin B1 content is negatively correlated with THIC and THI1 expression levels, suggesting post-transcriptional regulation of THIC by the riboswitch present in the 3'-UTR of the THIC mRNA and regulation of THI1 by promoter activity or alternative post-transcriptional mechanisms.
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Affiliation(s)
| | - Jared B Fudge
- Department of Botany and Plant Biology, University of Geneva, Geneva, Switzerland
| | - Teresa B Fitzpatrick
- Department of Botany and Plant Biology, University of Geneva, Geneva, Switzerland
| | | | - Hervé Vanderschuren
- Department of Biology, ETH Zurich, Zurich, Switzerland
- AgroBioChem Department, Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium
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Fudge J, Mangel N, Gruissem W, Vanderschuren H, Fitzpatrick TB. Rationalising vitamin B6 biofortification in crop plants. Curr Opin Biotechnol 2017; 44:130-137. [DOI: 10.1016/j.copbio.2016.12.004] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2016] [Revised: 12/17/2016] [Accepted: 12/19/2016] [Indexed: 12/31/2022]
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Vigani G, Di Silvestre D, Agresta AM, Donnini S, Mauri P, Gehl C, Bittner F, Murgia I. Molybdenum and iron mutually impact their homeostasis in cucumber (Cucumis sativus) plants. THE NEW PHYTOLOGIST 2017; 213:1222-1241. [PMID: 27735062 DOI: 10.1111/nph.14214] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2016] [Accepted: 08/22/2016] [Indexed: 05/22/2023]
Abstract
Molybdenum (Mo) and iron (Fe) are essential micronutrients required for crucial enzyme activities in plant metabolism. Here we investigated the existence of a mutual control of Mo and Fe homeostasis in cucumber (Cucumis sativus). Plants were grown under single or combined Mo and Fe starvation. Physiological parameters were measured, the ionomes of tissues and the ionomes and proteomes of root mitochondria were profiled, and the activities of molybdo-enzymes and the synthesis of molybdenum cofactor (Moco) were evaluated. Fe and Mo were found to affect each other's total uptake and distribution within tissues and at the mitochondrial level, with Fe nutritional status dominating over Mo homeostasis and affecting Mo availability for molybdo-enzymes in the form of Moco. Fe starvation triggered Moco biosynthesis and affected the molybdo-enzymes, with its main impact on nitrate reductase and xanthine dehydrogenase, both being involved in nitrogen assimilation and mobilization, and on the mitochondrial amidoxime reducing component. These results, together with the identification of > 100 proteins differentially expressed in root mitochondria, highlight the central role of mitochondria in the coordination of Fe and Mo homeostasis and allow us to propose the first model of the molecular interactions connecting Mo and Fe homeostasis.
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Affiliation(s)
- Gianpiero Vigani
- Department of Agricultural and Environmental Sciences, University of Milano, via Celoria 2, 20133, Milano, Italy
| | - Dario Di Silvestre
- Proteomic and Metabolomic Laboratory, Institute of Biomedical Technologies, National Research Council (ITB-CNR), via F.lli Cervi 93, 20090, Segrate (MI), Italy
| | - Anna Maria Agresta
- Proteomic and Metabolomic Laboratory, Institute of Biomedical Technologies, National Research Council (ITB-CNR), via F.lli Cervi 93, 20090, Segrate (MI), Italy
| | - Silvia Donnini
- Department of Agricultural and Environmental Sciences, University of Milano, via Celoria 2, 20133, Milano, Italy
| | - Pierluigi Mauri
- Proteomic and Metabolomic Laboratory, Institute of Biomedical Technologies, National Research Council (ITB-CNR), via F.lli Cervi 93, 20090, Segrate (MI), Italy
| | - Christian Gehl
- Institute of Horticulture Production Systems, Leibniz University of Hannover, Herrenhaeuser Str. 2, 30419, Hannover, Germany
| | - Florian Bittner
- Department of Plant Biology, Braunschweig University of Technology, Spielmannstrasse 7, 38106, Braunschweig, Germany
| | - Irene Murgia
- Department of Biosciences, University of Milano, via Celoria 26, 20133, Milano, Italy
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Kamarudin AN, Lai KS, Lamasudin DU, Idris AS, Balia Yusof ZN. Enhancement of Thiamine Biosynthesis in Oil Palm Seedlings by Colonization of Endophytic Fungus Hendersonia toruloidea. FRONTIERS IN PLANT SCIENCE 2017; 8:1799. [PMID: 29089959 PMCID: PMC5651052 DOI: 10.3389/fpls.2017.01799] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2017] [Accepted: 10/03/2017] [Indexed: 05/18/2023]
Abstract
Thiamine, or vitamin B1 plays an indispensable role as a cofactor in crucial metabolic reactions including glycolysis, pentose phosphate pathway and the tricarboxylic acid cycle in all living organisms. Thiamine has been shown to play a role in plant adaptation toward biotic and abiotic stresses. The modulation of thiamine biosynthetic genes in oil palm seedlings was evaluated in response to root colonization by endophytic Hendersonia toruloidea. Seven-month-old oil palm seedlings were inoculated with H. toruloidea and microscopic analyses were performed to visualize the localization of endophytic H. toruloidea in oil palm roots. Transmission electron microscopy confirmed that H. toruloidea colonized cortical cells. The expression of thiamine biosynthetic genes and accumulation of total thiamine in oil palm seedlings were also evaluated. Quantitative real-time PCR was performed to measure transcript abundances of four key thiamine biosynthesis genes (THI4, THIC, TH1, and TPK) on days 1, 7, 15, and 30 in response to H. toruloidea colonization. The results showed an increase of up to 12-fold in the expression of all gene transcripts on day 1 post-inoculation. On days 7, 15, and 30 post-inoculation, the relative expression levels of these genes were shown to be downregulated. Thiamine accumulation was observed on day 7 post-colonization and subsequently decreased until day 30. This work provides the first evidence for the enhancement of thiamine biosynthesis by endophytic colonization in oil palm seedlings.
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Affiliation(s)
- Amirah N. Kamarudin
- Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Malaysia
- Ganoderma and Diseases Research Group, Biology Division, Malaysian Palm Oil Board, Kajang, Malaysia
| | - Kok S. Lai
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Malaysia
| | - Dhilia U. Lamasudin
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Malaysia
| | - Abu S. Idris
- Ganoderma and Diseases Research Group, Biology Division, Malaysian Palm Oil Board, Kajang, Malaysia
| | - Zetty N. Balia Yusof
- Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Malaysia
- *Correspondence: Zetty N. Balia Yusof,
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Goyer A. Thiamin biofortification of crops. Curr Opin Biotechnol 2016; 44:1-7. [PMID: 27750185 DOI: 10.1016/j.copbio.2016.09.005] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2016] [Revised: 09/08/2016] [Accepted: 09/14/2016] [Indexed: 12/25/2022]
Abstract
Thiamin is essential for human health. While plants are the ultimate source of thiamin in most human diets, staple foods like white rice have low thiamin content. Therefore, populations whose diets are mainly based on low-thiamin staple crops suffer from thiamin deficiency. Biofortification of rice grain by engineering the thiamin biosynthesis pathway has recently been attempted, with up to 5-fold increase in thiamin content in unpolished seeds. However, polished seeds that retain only the starchy endosperm had similar thiamin content than that of non-engineered plants. Various factors such as limited supply of precursors, limited activity of thiamin biosynthetic enzymes, dependence on maternal tissues to supply thiamin, or lack of thiamin stabilizing proteins may have hindered thiamin increase in the endosperm.
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Affiliation(s)
- Aymeric Goyer
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97330, United States; Hermiston Agricultural Research and Extension Center, Oregon State University, Hermiston, OR 97838, United States.
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Martinis J, Gas-Pascual E, Szydlowski N, Crèvecoeur M, Gisler A, Bürkle L, Fitzpatrick TB. Long-Distance Transport of Thiamine (Vitamin B1) Is Concomitant with That of Polyamines. PLANT PHYSIOLOGY 2016; 171:542-53. [PMID: 27006489 PMCID: PMC4854701 DOI: 10.1104/pp.16.00009] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2016] [Accepted: 03/20/2016] [Indexed: 05/03/2023]
Abstract
Thiamine (vitamin B1) is ubiquitous and essential for cell energy supply in all organisms as a vital metabolic cofactor, known for over a century. In plants, it is established that biosynthesis de novo is taking place predominantly in green tissues and is furthermore limited to plastids. Therefore, transport mechanisms are required to mediate the movement of this polar metabolite from source to sink tissue to activate key enzymes in cellular energy generating pathways but are currently unknown. Similar to thiamine, polyamines are an essential set of charged molecules required for diverse aspects of growth and development, the homeostasis of which necessitates long-distance transport processes that have remained elusive. Here, a yeast-based screen allowed us to identify Arabidopsis (Arabidopsis thaliana) PUT3 as a thiamine transporter. A combination of biochemical, physiological, and genetic approaches permitted us to show that PUT3 mediates phloem transport of both thiamine and polyamines. Loss of function of PUT3 demonstrated that the tissue distribution of these metabolites is altered with growth and developmental consequences. The pivotal role of PUT3 mediated thiamine and polyamine homeostasis in plants, and its importance for plant fitness is revealed through these findings.
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Affiliation(s)
- Jacopo Martinis
- Department of Botany and Plant Biology, University of Geneva, 1211 Geneva, Switzerland (J.M., E.G.-P., N.S., M.C., A.G., T.B.F.); andInstitute of Agricultural Sciences, ETH Zurich, 8092 Zurich, Switzerland (L.B.)
| | - Elisabet Gas-Pascual
- Department of Botany and Plant Biology, University of Geneva, 1211 Geneva, Switzerland (J.M., E.G.-P., N.S., M.C., A.G., T.B.F.); andInstitute of Agricultural Sciences, ETH Zurich, 8092 Zurich, Switzerland (L.B.)
| | - Nicolas Szydlowski
- Department of Botany and Plant Biology, University of Geneva, 1211 Geneva, Switzerland (J.M., E.G.-P., N.S., M.C., A.G., T.B.F.); andInstitute of Agricultural Sciences, ETH Zurich, 8092 Zurich, Switzerland (L.B.)
| | - Michèle Crèvecoeur
- Department of Botany and Plant Biology, University of Geneva, 1211 Geneva, Switzerland (J.M., E.G.-P., N.S., M.C., A.G., T.B.F.); andInstitute of Agricultural Sciences, ETH Zurich, 8092 Zurich, Switzerland (L.B.)
| | - Alexandra Gisler
- Department of Botany and Plant Biology, University of Geneva, 1211 Geneva, Switzerland (J.M., E.G.-P., N.S., M.C., A.G., T.B.F.); andInstitute of Agricultural Sciences, ETH Zurich, 8092 Zurich, Switzerland (L.B.)
| | - Lukas Bürkle
- Department of Botany and Plant Biology, University of Geneva, 1211 Geneva, Switzerland (J.M., E.G.-P., N.S., M.C., A.G., T.B.F.); andInstitute of Agricultural Sciences, ETH Zurich, 8092 Zurich, Switzerland (L.B.)
| | - Teresa B Fitzpatrick
- Department of Botany and Plant Biology, University of Geneva, 1211 Geneva, Switzerland (J.M., E.G.-P., N.S., M.C., A.G., T.B.F.); andInstitute of Agricultural Sciences, ETH Zurich, 8092 Zurich, Switzerland (L.B.)
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Dong W, Thomas N, Ronald PC, Goyer A. Overexpression of Thiamin Biosynthesis Genes in Rice Increases Leaf and Unpolished Grain Thiamin Content But Not Resistance to Xanthomonas oryzae pv. oryzae. FRONTIERS IN PLANT SCIENCE 2016; 7:616. [PMID: 27242822 PMCID: PMC4861732 DOI: 10.3389/fpls.2016.00616] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2016] [Accepted: 04/22/2016] [Indexed: 05/06/2023]
Abstract
Thiamin diphosphate (ThDP), also known as vitamin B1, serves as an enzymatic cofactor in glucose metabolism, the Krebs cycle, and branched-chain amino acid biosynthesis in all living organisms. Unlike plants and microorganisms, humans are not able to synthesize ThDP de novo and must obtain it from their diet. Staple crops such as rice are poor sources of thiamin. Hence, populations that mainly consume rice commonly suffer thiamin deficiency. In addition to thiamin's nutritional function, studies in rice have shown that some thiamin biosynthesis genes are involved in resistance to Xanthomonas oryzae, which causes a serious disease in rice fields. This study shows that overexpression of two thiamin biosynthesis genes, 4-methyl-5-β-hydroxyethylthiazole phosphate synthase and 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate synthase, involved in the first steps of the thiazole and pyrimidine synthesis branches, respectively, increased thiamin content up to fivefold in unpolished seeds that retain the bran. However, thiamin levels in polished seeds with removed bran were similar to those found in polished control seeds. Plants with higher accumulation of thiamin did not show enhanced resistance to X. oryzae. These results indicate that stacking of two traits can enhance thiamin accumulation in rice unpolished grain. We discuss potential roadblocks that prevent thiamin accumulation in the endosperm.
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Affiliation(s)
- Wei Dong
- Department of Botany and Plant Pathology, Oregon State UniversityCorvallis, OR, USA
- Hermiston Agricultural Research and Extension Center, Oregon State UniversityHermiston, OR, USA
| | - Nicholas Thomas
- Department of Plant Pathology, University of California, DavisDavis, CA, USA
| | - Pamela C. Ronald
- Department of Plant Pathology, University of California, DavisDavis, CA, USA
| | - Aymeric Goyer
- Department of Botany and Plant Pathology, Oregon State UniversityCorvallis, OR, USA
- Hermiston Agricultural Research and Extension Center, Oregon State UniversityHermiston, OR, USA
- *Correspondence: Aymeric Goyer,
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