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Klińska-Bąchor S, Demski K, Gong Y, Banaś A. Biochemical characterization of acyl-CoA:diacylglycerol acyltransferase2 from the diatom Phaeodactylum tricornutum and its potential effect on LC-PUFAs biosynthesis in planta. BMC PLANT BIOLOGY 2024; 24:309. [PMID: 38649801 PMCID: PMC11036593 DOI: 10.1186/s12870-024-05014-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2024] [Accepted: 04/12/2024] [Indexed: 04/25/2024]
Abstract
BACKGROUND Eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA), belonging to ω-3 long-chain polyunsaturated fatty acids (ω3-LC-PUFAs), are essential components of human diet. They are mainly supplemented by marine fish consumption, although their native producers are oleaginous microalgae. Currently, increasing demand for fish oils is insufficient to meet the entire global needs, which puts pressure on searching for the alternative solutions. One possibility may be metabolic engineering of plants with an introduced enzymatic pathway producing ω3-LC-PUFAs. RESULT In this study we focused on the acyl-CoA:diacylglycerol acyltransferase2b (PtDGAT2b) from the diatom Phaeodactylum tricornutum, an enzyme responsible for triacylglycerol (TAG) biosynthesis via acyl-CoA-dependent pathway. Gene encoding PtDGAT2b, incorporated into TAG-deficient yeast strain H1246, was used to confirm its activity and conduct biochemical characterization. PtDGAT2b exhibited a broad acyl-CoA preference with both di-16:0-DAG and di-18:1-DAG, whereas di-18:1-DAG was favored. The highest preference for acyl donors was observed for 16:1-, 10:0- and 12:0-CoA. PtDGAT2b also very efficiently utilized CoA-conjugated ω-3 LC-PUFAs (stearidonic acid, eicosatetraenoic acid and EPA). Additionally, verification of the potential role of PtDGAT2b in planta, through its transient expression in tobacco leaves, indicated increased TAG production with its relative amount increasing to 8%. Its co-expression with the gene combinations aimed at EPA biosynthesis led to, beside elevated TAG accumulation, efficient accumulation of EPA which constituted even 25.1% of synthesized non-native fatty acids (9.2% of all fatty acids in TAG pool). CONCLUSIONS This set of experiments provides a comprehensive biochemical characterization of DGAT enzyme from marine microalgae. Additionally, this study elucidates that PtDGAT2b can be used successfully in metabolic engineering of plants designed to obtain a boosted TAG level, enriched not only in ω-3 LC-PUFAs but also in medium-chain and ω-7 fatty acids.
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Affiliation(s)
- Sylwia Klińska-Bąchor
- Intercollegiate Faculty of Biotechnology, University of Gdańsk and Medical University of Gdańsk, Gdańsk, Poland.
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.
| | - Kamil Demski
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden
| | - Yangmin Gong
- Oil Crops Research Institute of Chinese Academy of Agricultural Sciences, Wuhan, China
| | - Antoni Banaś
- Intercollegiate Faculty of Biotechnology, University of Gdańsk and Medical University of Gdańsk, Gdańsk, Poland
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Kamakura S, Bilcke G, Sato S. Transcriptional responses to salinity-induced changes in cell wall morphology of the euryhaline diatom Pleurosira laevis. JOURNAL OF PHYCOLOGY 2024; 60:308-326. [PMID: 38446079 DOI: 10.1111/jpy.13437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 01/23/2024] [Accepted: 02/05/2024] [Indexed: 03/07/2024]
Abstract
Diatoms are unicellular algae with morphologically diverse silica cell walls, which are called frustules. The mechanism of frustule morphogenesis has attracted attention in biology and nanomaterials engineering. However, the genetic regulation of the morphology remains unclear. We therefore used transcriptome sequencing to search for genes involved in frustule morphology in the centric diatom Pleurosira laevis, which exhibits morphological plasticity between flat and domed valve faces in salinity 2 and 7, respectively. We observed differential expression of transposable elements (TEs) and transporters, likely due to osmotic response. Up-regulation of mechanosensitive ion channels and down-regulation of Ca2+-ATPases in cells with flat valves suggested that cytosolic Ca2+ levels were changed between the morphologies. Calcium signaling could be a mechanism for detecting osmotic pressure changes and triggering morphological shifts. We also observed an up-regulation of ARPC1 and annexin, involved in the regulation of actin filament dynamics known to affect frustule morphology, as well as the up-regulation of genes encoding frustule-related proteins such as BacSETs and frustulin. Taken together, we propose a model in which salinity-induced morphogenetic changes are driven by upstream responses, such as the regulation of cytosolic Ca2+ levels, and downstream responses, such as Ca2+-dependent regulation of actin dynamics and frustule-related proteins. This study highlights the sensitivity of euryhaline diatoms to environmental salinity and the role of active cellular processes in controlling gross valve morphology under different osmotic pressures.
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Affiliation(s)
- Shiho Kamakura
- Graduate School of Bioscience and Biotechnology, Fukui Prefectural University, Obama, Fukui, Japan
| | - Gust Bilcke
- VIB Center for Plant Systems Biology, Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Protistology and Aquatic Ecology, Department of Biology, Ghent University, Ghent, Belgium
| | - Shinya Sato
- Faculty of Marine Science and Technology, Fukui Prefectural University, Obama, Fukui, Japan
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Murison V, Hérault J, Côme M, Guinio S, Lebon A, Chamot C, Bénard M, Galas L, Schoefs B, Marchand J, Bardor M, Ulmann L. Comparison of two Phaeodactylum tricornutum ecotypes under nitrogen starvation and resupply reveals distinct lipid accumulation strategies but a common degradation process. FRONTIERS IN PLANT SCIENCE 2023; 14:1257500. [PMID: 37810403 PMCID: PMC10556672 DOI: 10.3389/fpls.2023.1257500] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Accepted: 09/04/2023] [Indexed: 10/10/2023]
Abstract
Introduction Phaeodactylum tricornutum is a model species frequently used to study lipid metabolism in diatoms. When exposed to a nutrient limitation or starvation, diatoms are known to accumulate neutral lipids in cytoplasmic lipid droplets (LDs). Those lipids are produced partly de novo and partly from the recycle of plastid membrane lipids. Under a nitrogen resupply, the accumulated lipids are catabolized, a phenomenon about which only a few data are available. Various strains of P. tricornutum have been isolated around the world that may differ in lipid accumulation patterns. Methods To get further information on this topic, two genetically distant ecotypes of P. tricornutum (Pt1 and Pt4) have been cultivated under nitrogen deprivation during 11 days followed by a resupply period of 3 days. The importance of cytoplasmic LDs relative to the plastid was assessed by a combination of confocal laser scanning microscopy and cell volume estimation using bright field microscopy pictures. Results and discussion We observed that in addition to a basal population of small LDs (0.005 μm3 to 0.7 μm3) present in both strains all along the experiment, Pt4 cells immediately produced two large LDs (up to 12 μm3 after 11 days) while Pt1 cells progressively produced a higher number of smaller LDs (up to 7 μm3 after 11 days). In this work we showed that, in addition to intracellular available space, lipid accumulation may be limited by the pre-starvation size of the plastid as a source of membrane lipids to be recycled. After resupplying nitrogen and for both ecotypes, a fragmentation of the largest LDs was observed as well as a possible migration of LDs to the vacuoles that would suggest an autophagic degradation. Altogether, our results deepen the understanding of LDs dynamics and open research avenues for a better knowledge of lipid degradation in diatoms.
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Affiliation(s)
- Victor Murison
- Biology of Organisms, Stress, Health and Environment, IUT Département Génie Biologique, Le Mans Université, IUML-FR 3473 CNRS, Laval, France
| | - Josiane Hérault
- Biology of Organisms, Stress, Health and Environment, IUT Département Génie Biologique, Le Mans Université, IUML-FR 3473 CNRS, Laval, France
| | - Martine Côme
- Biology of Organisms, Stress, Health and Environment, IUT Département Génie Biologique, Le Mans Université, IUML-FR 3473 CNRS, Laval, France
| | - Sabrina Guinio
- Biology of Organisms, Stress, Health and Environment, IUT Département Génie Biologique, Le Mans Université, IUML-FR 3473 CNRS, Laval, France
| | - Alexis Lebon
- Université de Rouen Normandie, INSERM, CNRS, HeRacLeS US51 UAR2026, PRIMACEN, Rouen, France
| | - Christophe Chamot
- Université de Rouen Normandie, INSERM, CNRS, HeRacLeS US51 UAR2026, PRIMACEN, Rouen, France
| | - Magalie Bénard
- Université de Rouen Normandie, INSERM, CNRS, HeRacLeS US51 UAR2026, PRIMACEN, Rouen, France
| | - Ludovic Galas
- Université de Rouen Normandie, INSERM, CNRS, HeRacLeS US51 UAR2026, PRIMACEN, Rouen, France
| | - Benoît Schoefs
- Biology of Organisms, Stress, Health and Environment, UFR Sciences et Techniques, Le Mans Université, IUML-FR 3473 CNRS, Le Mans, France
| | - Justine Marchand
- Biology of Organisms, Stress, Health and Environment, UFR Sciences et Techniques, Le Mans Université, IUML-FR 3473 CNRS, Le Mans, France
| | - Muriel Bardor
- Université de Rouen Normandie, Laboratoire GlycoMEV UR4358, SFR Normandie Végétal FED 4277, Innovation Chimie Carnot, Rouen, France
| | - Lionel Ulmann
- Biology of Organisms, Stress, Health and Environment, IUT Département Génie Biologique, Le Mans Université, IUML-FR 3473 CNRS, Laval, France
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Characterization of a Marine Diatom Chitin Synthase Using a Combination of Meta-Omics, Genomics, and Heterologous Expression Approaches. mSystems 2023; 8:e0113122. [PMID: 36790195 PMCID: PMC10134812 DOI: 10.1128/msystems.01131-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023] Open
Abstract
β-Chitin has important ecological and physiological roles and potential for widespread applications, but the characterization of chitin-related enzymes from β-chitin producers was rarely reported. Querying against the Tara Oceans Gene Atlas, 4,939 chitin-related unique sequences from 12 Pfam accessions were found in Bacillariophyta metatranscriptomes. Putative chitin synthase (CHS) sequences are decreasingly present in Crustacea (39%), Stramenopiles (16%) and Insecta (14%) from the Marine Atlas of Tara Oceans Unigenes version 1 Metatranscriptomes (MATOUv1+T) database. A CHS gene from the model diatom Thalassiosira pseudonana (Thaps3_J4413, designated TpCHS1) was identified. Homology analysis of TpCHS1 in Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP), PhycoCosm, and the PLAZA diatom omics data set showed that Mediophyceae and Thalassionemales species were potential new β-chitin producers besides Thalassiosirales. TpCHS1 was overexpressed in Saccharomyces cerevisiae and Phaeodactylum tricornutum. In transgenic P. tricornutum lines, TpCHS1-eGFP localizes to the Golgi apparatus and plasma membrane and predominantly accumulates in the cleavage furrow during cell division. Enhanced TpCHS1 expression could induce abnormal cell morphology and reduce growth rates in P. tricornutum, which might be ascribed to the inhibition of the G2/M phase. S. cerevisiae was proved to be a better system for expressing large amounts of active TpCHS1, which effectively incorporates UDP-N-acetylglucosamine in radiometric in vitro assays. Our study expands the knowledge on chitin synthase taxonomic distribution in marine eukaryotic microbes, and is the first to collectively characterize an active marine diatom CHS which may play an important role during cell division. IMPORTANCE As the most abundant biopolymer in the oceans, the significance of chitin and its biosynthesis is rarely demonstrated in diatoms, which are the main contributors to the primary productivity of the oceans, ascribed to their huge biomass and efficient photosynthesis. We retrieved genes involved in chitin-based metabolism against the Tara Oceans Gene Atlas to expand our knowledge about their diversity and distribution in the marine environment. Potential new producers of chitin were found from the analysis of various algal transcriptome and genome databases. Heterologous expression confirms that Thalassiosira pseudonana contains an active chitin synthase (CHS) which may play an important role in the cell division process of diatoms. This study provides new insight into CHS geographic and taxonomic distribution in marine eukaryotic microbes, as well as into a new CHS functioning in the biosynthesis of β-chitin in diatoms.
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Bilcke G, Osuna-Cruz CM, Santana Silva M, Poulsen N, D'hondt S, Bulankova P, Vyverman W, De Veylder L, Vandepoele K. Diurnal transcript profiling of the diatom Seminavis robusta reveals adaptations to a benthic lifestyle. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 107:315-336. [PMID: 33901335 DOI: 10.1111/tpj.15291] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2021] [Revised: 04/16/2021] [Accepted: 04/19/2021] [Indexed: 06/12/2023]
Abstract
Coastal regions contribute an estimated 20% of annual gross primary production in the oceans, despite occupying only 0.03% of their surface area. Diatoms frequently dominate coastal sediments, where they experience large variations in light regime resulting from the interplay of diurnal and tidal cycles. Here, we report on an extensive diurnal transcript profiling experiment of the motile benthic diatom Seminavis robusta. Nearly 90% (23 328) of expressed protein-coding genes and 66.9% (1124) of expressed long intergenic non-coding RNAs showed significant expression oscillations and are predominantly phasing at night with a periodicity of 24 h. Phylostratigraphic analysis found that rhythmic genes are enriched in highly conserved genes, while diatom-specific genes are predominantly associated with midnight expression. Integration of genetic and physiological cell cycle markers with silica depletion data revealed potential new silica cell wall-associated gene families specific to diatoms. Additionally, we observed 1752 genes with a remarkable semidiurnal (12-h) periodicity, while the expansion of putative circadian transcription factors may reflect adaptations to cope with highly unpredictable external conditions. Taken together, our results provide new insights into the adaptations of diatoms to the benthic environment and serve as a valuable resource for the study of diurnal regulation in photosynthetic eukaryotes.
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Affiliation(s)
- Gust Bilcke
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, 9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, 9052, Belgium
- Department of Biology, Protistology and Aquatic Ecology, Ghent University, Ghent, 9000, Belgium
- Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent, 9000, Belgium
| | - Cristina Maria Osuna-Cruz
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, 9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, 9052, Belgium
- Bioinformatics Institute Ghent, Ghent University, Technologiepark 71, Ghent, 9052, Belgium
| | - Marta Santana Silva
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, 9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, 9052, Belgium
| | - Nicole Poulsen
- B CUBE Center for Molecular Bioengineering, Technical University of Dresden, Tatzberg 41, Dresden, 01307, Germany
| | - Sofie D'hondt
- Department of Biology, Protistology and Aquatic Ecology, Ghent University, Ghent, 9000, Belgium
| | - Petra Bulankova
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, 9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, 9052, Belgium
| | - Wim Vyverman
- Department of Biology, Protistology and Aquatic Ecology, Ghent University, Ghent, 9000, Belgium
| | - Lieven De Veylder
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, 9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, 9052, Belgium
| | - Klaas Vandepoele
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, 9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, 9052, Belgium
- Bioinformatics Institute Ghent, Ghent University, Technologiepark 71, Ghent, 9052, Belgium
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Using Diatom and Apicomplexan Models to Study the Heme Pathway of Chromera velia. Int J Mol Sci 2021; 22:ijms22126495. [PMID: 34204357 PMCID: PMC8233740 DOI: 10.3390/ijms22126495] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Revised: 06/11/2021] [Accepted: 06/12/2021] [Indexed: 12/20/2022] Open
Abstract
Heme biosynthesis is essential for almost all living organisms. Despite its conserved function, the pathway’s enzymes can be located in a remarkable diversity of cellular compartments in different organisms. This location does not always reflect their evolutionary origins, as might be expected from the history of their acquisition through endosymbiosis. Instead, the final subcellular localization of the enzyme reflects multiple factors, including evolutionary origin, demand for the product, availability of the substrate, and mechanism of pathway regulation. The biosynthesis of heme in the apicomonad Chromera velia follows a chimeric pathway combining heme elements from the ancient algal symbiont and the host. Computational analyses using different algorithms predict complex targeting patterns, placing enzymes in the mitochondrion, plastid, endoplasmic reticulum, or the cytoplasm. We employed heterologous reporter gene expression in the apicomplexan parasite Toxoplasma gondii and the diatom Phaeodactylum tricornutum to experimentally test these predictions. 5-aminolevulinate synthase was located in the mitochondria in both transfection systems. In T. gondii, the two 5-aminolevulinate dehydratases were located in the cytosol, uroporphyrinogen synthase in the mitochondrion, and the two ferrochelatases in the plastid. In P. tricornutum, all remaining enzymes, from ALA-dehydratase to ferrochelatase, were placed either in the endoplasmic reticulum or in the periplastidial space.
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Guéguen N, Le Moigne D, Amato A, Salvaing J, Maréchal E. Lipid Droplets in Unicellular Photosynthetic Stramenopiles. FRONTIERS IN PLANT SCIENCE 2021; 12:639276. [PMID: 33968100 PMCID: PMC8100218 DOI: 10.3389/fpls.2021.639276] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2020] [Accepted: 03/17/2021] [Indexed: 06/12/2023]
Abstract
The Heterokonta or Stramenopile phylum comprises clades of unicellular photosynthetic species, which are promising for a broad range of biotechnological applications, based on their capacity to capture atmospheric CO2 via photosynthesis and produce biomolecules of interest. These molecules include triacylglycerol (TAG) loaded inside specific cytosolic bodies, called the lipid droplets (LDs). Understanding TAG production and LD biogenesis and function in photosynthetic stramenopiles is therefore essential, and is mostly based on the study of a few emerging models, such as the pennate diatom Phaeodactylum tricornutum and eustigmatophytes, such as Nannochloropsis and Microchloropsis species. The biogenesis of cytosolic LD usually occurs at the level of the endoplasmic reticulum. However, stramenopile cells contain a complex plastid deriving from a secondary endosymbiosis, limited by four membranes, the outermost one being connected to the endomembrane system. Recent cell imaging and proteomic studies suggest that at least some cytosolic LDs might be associated to the surface of the complex plastid, via still uncharacterized contact sites. The carbon length and number of double bonds of the acyl groups contained in the TAG molecules depend on their origin. De novo synthesis produces long-chain saturated or monounsaturated fatty acids (SFA, MUFA), whereas subsequent maturation processes lead to very long-chain polyunsaturated FA (VLC-PUFA). TAG composition in SFA, MUFA, and VLC-PUFA reflects therefore the metabolic context that gave rise to the formation of the LD, either via an early partitioning of carbon following FA de novo synthesis and/or a recycling of FA from membrane lipids, e.g., plastid galactolipids or endomembrane phosphor- or betaine lipids. In this review, we address the relationship between cytosolic LDs and the complex membrane compartmentalization within stramenopile cells, the metabolic routes leading to TAG accumulation, and the physiological conditions that trigger LD production, in response to various environmental factors.
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Galas L, Burel C, Schapman D, Ropitaux M, Bernard S, Bénard M, Bardor M. Comparative Structural and Functional Analyses of the Fusiform, Oval, and Triradiate Morphotypes of Phaeodactylum tricornutum Pt3 Strain. FRONTIERS IN PLANT SCIENCE 2021; 12:638181. [PMID: 33912207 PMCID: PMC8072121 DOI: 10.3389/fpls.2021.638181] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2020] [Accepted: 03/16/2021] [Indexed: 05/24/2023]
Abstract
The diatom Phaeodactylum tricornutum is a marine unicellular microalga that exists under three main morphotypes: oval, fusiform, and triradiate. Previous works have demonstrated that the oval morphotype of P. tricornutum Pt3 strain presents specific metabolic features. Here, we compared the cellular organization of the main morphotypes of the diatom P. tricornutum Pt3 strain through transmission electron and advanced light microscopies. The three morphotypes share similarities including spectral characteristics of the plastid, the location of the nucleus, the organization of mitochondria around the plastid as well as the existence of both a F-actin cortex, and an intracellular network of F-actin. In contrast, compared to fusiform and triradiate cells, oval cells spontaneously release proteins more rapidly. In addition, comparison of whole transcriptomes of oval versus fusiform or triradiate cells revealed numerous differential expression of positive and negative regulators belonging to the complex dynamic secretory machinery. This study highlights the specificities occurring within the oval morphotype underlying that the oval cells secrete proteins more rapidly.
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Affiliation(s)
- Ludovic Galas
- Normandie University, UNIROUEN, INSERM, PRIMACEN, Rouen, France
| | - Carole Burel
- Normandie University, UNIROUEN, Laboratoire Glycobiologie et Matrice Extracellulaire Végétale (Glyco-MEV) EA4358, Rouen, France
| | - Damien Schapman
- Normandie University, UNIROUEN, INSERM, PRIMACEN, Rouen, France
| | - Marc Ropitaux
- Normandie University, UNIROUEN, Laboratoire Glycobiologie et Matrice Extracellulaire Végétale (Glyco-MEV) EA4358, Rouen, France
| | - Sophie Bernard
- Normandie University, UNIROUEN, INSERM, PRIMACEN, Rouen, France
- Normandie University, UNIROUEN, Laboratoire Glycobiologie et Matrice Extracellulaire Végétale (Glyco-MEV) EA4358, Rouen, France
| | - Magalie Bénard
- Normandie University, UNIROUEN, INSERM, PRIMACEN, Rouen, France
| | - Muriel Bardor
- Normandie University, UNIROUEN, Laboratoire Glycobiologie et Matrice Extracellulaire Végétale (Glyco-MEV) EA4358, Rouen, France
- Institut Universitaire de France, Paris, France
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Mann M, Serif M, Wrobel T, Eisenhut M, Madhuri S, Flachbart S, Weber APM, Lepetit B, Wilhelm C, Kroth PG. The Aureochrome Photoreceptor PtAUREO1a Is a Highly Effective Blue Light Switch in Diatoms. iScience 2020; 23:101730. [PMID: 33235981 PMCID: PMC7670200 DOI: 10.1016/j.isci.2020.101730] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 09/30/2020] [Accepted: 10/21/2020] [Indexed: 02/08/2023] Open
Abstract
Aureochromes represent a unique type of blue light photoreceptors that possess a blue light sensing flavin-binding LOV-domain and a DNA-binding bZIP domain, thus being light-driven transcription factors. The diatom Phaeodactylum tricornutum, a member of the essential marine primary producers, possesses four aureochromes (PtAUREO1a, 1b, 1c, 2). Here we show a dramatic change in the global gene expression pattern of P. tricornutum wild-type cells after a shift from red to blue light. About 75% of the genes show significantly changed transcript levels already after 10 and 60 min of blue light exposure, which includes genes of major transcription factors as well as other photoreceptors. Very surprisingly, this light-induced regulation of gene expression is almost completely inhibited in independent PtAureo1a knockout lines. Such a massive and fast transcriptional change depending on one single photoreceptor is so far unprecedented. We conclude that PtAUREO1a plays a key role in diatoms upon blue light exposure. Blue light induces a very fast transcriptional response in the diatom P. tricornutum This strong response is almost completely inhibited when Aureochrome 1a is absent The results imply a key role of PtAureo1a in blue light-induced responses in diatoms
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Affiliation(s)
- Marcus Mann
- Institut für Biologie, Universität Leipzig, 04009 Leipzig, Germany
| | - Manuel Serif
- Fachbereich Biologie, Universität Konstanz, 78457 Konstanz, Germany
| | - Thomas Wrobel
- Institut für Biochemie der Pflanzen, Cluster of Excellence on Plant Science (CEPLAS), Heinrich-Heine-Universität, 40225 Düsseldorf, Germany
| | - Marion Eisenhut
- Institut für Biochemie der Pflanzen, Cluster of Excellence on Plant Science (CEPLAS), Heinrich-Heine-Universität, 40225 Düsseldorf, Germany
| | - Shvaita Madhuri
- Fachbereich Biologie, Universität Konstanz, 78457 Konstanz, Germany
| | - Samantha Flachbart
- Institut für Biochemie der Pflanzen, Cluster of Excellence on Plant Science (CEPLAS), Heinrich-Heine-Universität, 40225 Düsseldorf, Germany
| | - Andreas P M Weber
- Institut für Biochemie der Pflanzen, Cluster of Excellence on Plant Science (CEPLAS), Heinrich-Heine-Universität, 40225 Düsseldorf, Germany
| | - Bernard Lepetit
- Fachbereich Biologie, Universität Konstanz, 78457 Konstanz, Germany
| | | | - Peter G Kroth
- Fachbereich Biologie, Universität Konstanz, 78457 Konstanz, Germany
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González-Fernández C, Le Grand F, Bideau A, Huvet A, Paul-Pont I, Soudant P. Nanoplastics exposure modulate lipid and pigment compositions in diatoms. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020; 262:114274. [PMID: 32135430 DOI: 10.1016/j.envpol.2020.114274] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2019] [Revised: 02/07/2020] [Accepted: 02/24/2020] [Indexed: 06/10/2023]
Abstract
The impact of nanoplastics (NP) using model polystyrene nanoparticles amine functionalized (PS-NH2) has been investigated on pigment and lipid compositions of the marine diatom Chaetoceros neogracile, at two growth phases using a low (0.05 μg mL-1) and a high (5 μg mL-1) concentrations for 96 h. Results evidenced an impact on pigment composition associated to the light-harvesting function and photoprotection mainly at exponential phase. NP also impacted lipid composition of diatoms with a re-adjustment of lipid classes and fatty acids noteworthy. Main changes upon NP exposure were observed in galactolipids and triacylglycerol's at both growth phases affecting the thylakoids membrane structure and cellular energy reserve of diatoms. Particularly, exponential cultures exposed to high NP concentration showed an impairment of long chain fatty acids synthesis. Changes in pigment and lipid content of diatom' cells revealed that algae physiology is determinant in the way cells adjust their thylakoid membrane composition to cope with NP contamination stress. Compositions of reserve and membrane lipids are proposed as sensitive markers to assess the impact of NP exposure, including at potential predicted environmental doses, on marine organisms.
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Affiliation(s)
- Carmen González-Fernández
- Fish Innate Immune System Group, Department of Cell Biology and Histology, Faculty of Biology, Regional Campus of International Excellence "Campus Mare Nostrum", University of Murcia, 30100, Murcia, Spain; Laboratoire des Sciences de l'Environnement Marin (LEMAR), Univ. Brest, CNRS, IRD, Ifremer, LEMAR, F-29280, Plouzané, France
| | - Fabienne Le Grand
- Laboratoire des Sciences de l'Environnement Marin (LEMAR), Univ. Brest, CNRS, IRD, Ifremer, LEMAR, F-29280, Plouzané, France
| | - Antoine Bideau
- Laboratoire des Sciences de l'Environnement Marin (LEMAR), Univ. Brest, CNRS, IRD, Ifremer, LEMAR, F-29280, Plouzané, France
| | - Arnaud Huvet
- Ifremer, Laboratoire des Sciences de l'Environnement Marin (LEMAR), CS 10070, 29280, Plouzané, France
| | - Ika Paul-Pont
- Laboratoire des Sciences de l'Environnement Marin (LEMAR), Univ. Brest, CNRS, IRD, Ifremer, LEMAR, F-29280, Plouzané, France
| | - Philippe Soudant
- Laboratoire des Sciences de l'Environnement Marin (LEMAR), Univ. Brest, CNRS, IRD, Ifremer, LEMAR, F-29280, Plouzané, France.
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11
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Liu Q, Xing Y, Li Y, Wang H, Mi T, Zhen Y, Yu Z. Carbon fixation gene expression in Skeletonema marinoi in nitrogen-, phosphate-, silicate-starvation, and low-temperature stress exposure. JOURNAL OF PHYCOLOGY 2020; 56:310-323. [PMID: 31628865 DOI: 10.1111/jpy.12936] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2019] [Accepted: 10/10/2019] [Indexed: 06/10/2023]
Abstract
Diatoms are unicellular algae with a set of extraordinary genes, metabolic pathways, and physiological functions acquired by secondary endosymbiosis, especially for their efficient photosynthetic carbon fixation mechanisms, which can be a reason for their successful environmental adaptation and great contribution to primary production. Based on the available genomic information, the expression patterns of carbon fixation genes were analyzed using transcriptomic sequencing and reverse transcription-quantitative polymerase chain reaction (RT-qPCR) in Skeletonema marinoi. Meanwhile, suitable reference genes applying to specific experimental treatments were selected. In our results, carbon fixation genes were standardized by actin and TATA box-binding protein-coding genes in growth phase samples and stress conditions, respectively. It was found that a series of carbon fixation genes, such as the pyruvate orthophosphate dikinase (PPDK)-coding gene, had significantly up-regulated expression in nitrogen-starvation, phosphate-starvation, and low-temperature conditions, but consistently down-regulated in silicate-starvation treatment. These carbon fixation genes exhibited variable expression levels in different conditions and will be useful for investigating gene expression mechanisms in S. marinoi and improve our understanding of diatom carbon fixation pathways.
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Affiliation(s)
- Qian Liu
- Key laboratory of Marine Environment and Ecology, Ministry of Education, Qingdao, 266100, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266071, China
- College of Marine Life Science, Ocean University of China, Qingdao, 266003, China
| | - Yongze Xing
- Key laboratory of Marine Environment and Ecology, Ministry of Education, Qingdao, 266100, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266071, China
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China
- Guangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Guangxi Sciences Academy, Beihai, 536000, China
| | - Ying Li
- Key laboratory of Marine Environment and Ecology, Ministry of Education, Qingdao, 266100, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266071, China
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China
| | - Hualong Wang
- Key laboratory of Marine Environment and Ecology, Ministry of Education, Qingdao, 266100, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266071, China
- College of Marine Life Science, Ocean University of China, Qingdao, 266003, China
| | - Tiezhu Mi
- Key laboratory of Marine Environment and Ecology, Ministry of Education, Qingdao, 266100, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266071, China
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China
| | - Yu Zhen
- Key laboratory of Marine Environment and Ecology, Ministry of Education, Qingdao, 266100, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266071, China
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China
| | - Zhigang Yu
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266071, China
- Key Laboratory of Marine Chemical Theory and Technology, Ministry of Education, Qingdao, 266100, China
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12
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Di Dato V, Barbarinaldi R, Amato A, Di Costanzo F, Fontanarosa C, Perna A, Amoresano A, Esposito F, Cutignano A, Ianora A, Romano G. Variation in prostaglandin metabolism during growth of the diatom Thalassiosira rotula. Sci Rep 2020; 10:5374. [PMID: 32214130 PMCID: PMC7096440 DOI: 10.1038/s41598-020-61967-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Accepted: 02/28/2020] [Indexed: 02/03/2023] Open
Abstract
Prostaglandins (PGs) are hormone-like mediators in many physiological and pathological processes that are present in all vertebrates, in some terrestrial and aquatic invertebrates, and have also been identified in some macroalgae. They have recently been reported also in marine microalgae but their role as chemical mediators is largely unknown. Here we studied the expression pattern of the PG biosynthetic pathway during different growth phases of the centric diatom Thalassiosira rotula and assessed the release of PGs in the surrounding environment for the first time. We show that enzymes responsible for PGs formation such as cyclooxygenase, prostaglandin E synthase 2-like and prostaglandin F synthase are mainly expressed at the end of the exponential phase and that PGs are released especially during the stationary and senescent phases, suggesting a possible signaling function for these compounds. Phylogenetic analysis of the limiting enzyme, COX, indicate the presence in diatoms of more than one enzyme related to the oxidative metabolism of fatty acids belonging to the peroxidase-cyclooxygenase superfamily. These findings suggest a more complex evolution and diversity of metabolic pathways leading to the synthesis of lipid mediators in diatoms.
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Affiliation(s)
- Valeria Di Dato
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Napoli, Italy.
| | | | - Alberto Amato
- Laboratoire de Physiologie Cellulaire Végétale, Université Grenoble Alpes, CEA, CNRS, INRA, IRIG-LPCV 38054, Grenoble Cedex 9, France
| | | | - Carolina Fontanarosa
- Dipartimento di Scienze Chimiche, Università degli Studi di Napoli, Monte Sant'Angelo, 80126, Napoli, Italy
| | - Anna Perna
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Napoli, Italy
| | - Angela Amoresano
- Dipartimento di Scienze Chimiche, Università degli Studi di Napoli, Monte Sant'Angelo, 80126, Napoli, Italy
| | | | - Adele Cutignano
- Istituto di Chimica Biomolecolare-CNR, Via Campi Flegrei 34, 80078, Pozzuoli, Napoli, Italy
| | - Adrianna Ianora
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Napoli, Italy
| | - Giovanna Romano
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Napoli, Italy
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13
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Falciatore A, Jaubert M, Bouly JP, Bailleul B, Mock T. Diatom Molecular Research Comes of Age: Model Species for Studying Phytoplankton Biology and Diversity. THE PLANT CELL 2020; 32:547-572. [PMID: 31852772 PMCID: PMC7054031 DOI: 10.1105/tpc.19.00158] [Citation(s) in RCA: 56] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Revised: 10/18/2019] [Accepted: 12/13/2019] [Indexed: 05/08/2023]
Abstract
Diatoms are the world's most diverse group of algae, comprising at least 100,000 species. Contributing ∼20% of annual global carbon fixation, they underpin major aquatic food webs and drive global biogeochemical cycles. Over the past two decades, Thalassiosira pseudonana and Phaeodactylum tricornutum have become the most important model systems for diatom molecular research, ranging from cell biology to ecophysiology, due to their rapid growth rates, small genomes, and the cumulative wealth of associated genetic resources. To explore the evolutionary divergence of diatoms, additional model species are emerging, such as Fragilariopsis cylindrus and Pseudo-nitzschia multistriata Here, we describe how functional genomics and reverse genetics have contributed to our understanding of this important class of microalgae in the context of evolution, cell biology, and metabolic adaptations. Our review will also highlight promising areas of investigation into the diversity of these photosynthetic organisms, including the discovery of new molecular pathways governing the life of secondary plastid-bearing organisms in aquatic environments.
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Affiliation(s)
- Angela Falciatore
- Institut de Biologie Physico-Chimique, Laboratory of Chloroplast Biology and Light Sensing in Microalgae, UMR7141 Centre National de la Recherche Scientifique (CNRS), Sorbonne Université, 75005 Paris, France
- Institut de Biologie Paris-Seine, Laboratory of Computational and Quantitative Biology, UMR7238 Sorbonne Université, 75005 Paris, France
| | - Marianne Jaubert
- Institut de Biologie Physico-Chimique, Laboratory of Chloroplast Biology and Light Sensing in Microalgae, UMR7141 Centre National de la Recherche Scientifique (CNRS), Sorbonne Université, 75005 Paris, France
- Institut de Biologie Paris-Seine, Laboratory of Computational and Quantitative Biology, UMR7238 Sorbonne Université, 75005 Paris, France
| | - Jean-Pierre Bouly
- Institut de Biologie Physico-Chimique, Laboratory of Chloroplast Biology and Light Sensing in Microalgae, UMR7141 Centre National de la Recherche Scientifique (CNRS), Sorbonne Université, 75005 Paris, France
- Institut de Biologie Paris-Seine, Laboratory of Computational and Quantitative Biology, UMR7238 Sorbonne Université, 75005 Paris, France
| | - Benjamin Bailleul
- Institut de Biologie Physico-Chimique, Laboratory of Chloroplast Biology and Light Sensing in Microalgae, UMR7141 Centre National de la Recherche Scientifique (CNRS), Sorbonne Université, 75005 Paris, France
| | - Thomas Mock
- School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, United Kingdom
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14
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Marter P, Schmidt S, Kiontke S, Moog D. Optimized mRuby3 is a Suitable Fluorescent Protein for in vivo Co-localization Studies with GFP in the Diatom Phaeodactylum tricornutum. Protist 2020; 171:125715. [PMID: 32062589 DOI: 10.1016/j.protis.2020.125715] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2019] [Revised: 12/19/2019] [Accepted: 12/27/2019] [Indexed: 11/19/2022]
Abstract
Phaeodactylum tricornutum is an ecologically and evolutionarily relevant microalga that has developed into an important model for molecular biological studies on organisms with complex plastids. The diatom is particularly suitable for in vivo protein localization analyses via fluorescence microscopy in which the green fluorescent protein (GFP) and its derivatives are dominantly used. Whereas GFP fluorescence emission is usually measured between 500 and 520nm in confocal microscopy, the autofluorescence of the P. tricornutum plastid is detected above 625nm. Here we established the fluorescent protein mRuby3 as tag for efficient in vivo protein localization studies by expressing a codon-optimized gene in P. tricornutum. mRuby3 was directed to seven different subcellular localizations by means of full-length marker protein or N-/C-terminal targeting signal fusions; its emission was detected efficiently between 580 and 605nm, being unequivocally distinguishable from the plastid autofluorescence in vivo. Moreover, mRuby3 proved to be highly suitable for co-localization experiments using confocal laser scanning microscopy in which mRuby3 fusion proteins were expressed in parallel with GFP-tagged proteins. Our results show the potential of mRuby3 for its application in studying protein targeting and localization in P. tricornutum, particularly underlining its compatibility with GFP and the plastid autofluorescence in signal detection.
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Affiliation(s)
- Pia Marter
- Laboratory for Cell Biology, Philipps University Marburg, Karl-von-Frisch-Str. 8, 35032 Marburg, Germany
| | - Sebastian Schmidt
- Laboratory for Cell Biology, Philipps University Marburg, Karl-von-Frisch-Str. 8, 35032 Marburg, Germany
| | - Stephan Kiontke
- Molecular Plant Physiology and Photobiology, Philipps University Marburg, Karl-von-Frisch-Str. 8, 35032 Marburg, Germany
| | - Daniel Moog
- Laboratory for Cell Biology, Philipps University Marburg, Karl-von-Frisch-Str. 8, 35032 Marburg, Germany; SYNMIKRO Research Center, Hans-Meerwein-Str. 6, 35032 Marburg, Germany.
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15
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Ait-Mohamed O, Novák Vanclová AMG, Joli N, Liang Y, Zhao X, Genovesio A, Tirichine L, Bowler C, Dorrell RG. PhaeoNet: A Holistic RNAseq-Based Portrait of Transcriptional Coordination in the Model Diatom Phaeodactylum tricornutum. FRONTIERS IN PLANT SCIENCE 2020; 11:590949. [PMID: 33178253 PMCID: PMC7596299 DOI: 10.3389/fpls.2020.590949] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Accepted: 09/15/2020] [Indexed: 05/04/2023]
Abstract
Transcriptional coordination is a fundamental component of prokaryotic and eukaryotic cell biology, underpinning the cell cycle, physiological transitions, and facilitating holistic responses to environmental stress, but its overall dynamics in eukaryotic algae remain poorly understood. Better understanding of transcriptional partitioning may provide key insights into the primary metabolism pathways of eukaryotic algae, which frequently depend on intricate metabolic associations between the chloroplasts and mitochondria that are not found in plants. Here, we exploit 187 publically available RNAseq datasets generated under varying nitrogen, iron and phosphate growth conditions to understand the co-regulatory principles underpinning transcription in the model diatom Phaeodactylum tricornutum. Using WGCNA (Weighted Gene Correlation Network Analysis), we identify 28 merged modules of co-expressed genes in the P. tricornutum genome, which show high connectivity and correlate well with previous microarray-based surveys of gene co-regulation in this species. We use combined functional, subcellular localization and evolutionary annotations to reveal the fundamental principles underpinning the transcriptional co-regulation of genes implicated in P. tricornutum chloroplast and mitochondrial metabolism, as well as the functions of diverse transcription factors underpinning this co-regulation. The resource is publically available as PhaeoNet, an advanced tool to understand diatom gene co-regulation.
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Affiliation(s)
- Ouardia Ait-Mohamed
- Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
| | - Anna M. G. Novák Vanclová
- Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
| | - Nathalie Joli
- Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
| | - Yue Liang
- Department of Oceanography, Dalhousie University, Halifax, NS, Canada
| | - Xue Zhao
- Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
- Université de Nantes, CNRS, UFIP, UMR 6286, Nantes, France
| | - Auguste Genovesio
- Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
| | - Leila Tirichine
- Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
- Université de Nantes, CNRS, UFIP, UMR 6286, Nantes, France
- *Correspondence: Leila Tirichine,
| | - Chris Bowler
- Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
- Chris Bowler,
| | - Richard G. Dorrell
- Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
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16
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17
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Chen Z, Wang X, Li S, Yao J, Shao Z, Duan D. Verification of the Saccharina japonica Translocon Tic20 and its Localization in the Chloroplast Membrane in Diatoms. Int J Mol Sci 2019; 20:E4000. [PMID: 31426420 PMCID: PMC6720183 DOI: 10.3390/ijms20164000] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Revised: 08/01/2019] [Accepted: 08/15/2019] [Indexed: 12/21/2022] Open
Abstract
Tic20 is an important translocon protein that plays a role in protein transport in the chloroplast. The sequence of Tic20 was determined in the lower brown alga Saccharina japonica. Structural analysis of SjTic20 revealed a noncanonical structure consisting of an N-terminal non-cyanobacterium-originated EF-hand domain (a helix-loop-helix structural domain) and a C-terminal cyanobacterium-originated Tic20 domain. Subcellular localization and transmembrane analysis indicated that SjTic20 featured an "M"-type Nin-Cin-terminal orientation, with four transmembrane domains in the innermost membrane of the chloroplast in the microalga Phaeodactylum tricornutum, and the EF-hand domain was entirely extruded into the chloroplast stroma. Our study provides information on the structure, localization, and topological features of SjTic20, and further functional analysis of SjTic20 in S. japonica is needed.
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Affiliation(s)
- Zhihang Chen
- Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China
- University of Chinese Academy of Sciences, Beijing 100093, China
| | - Xiuliang Wang
- Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China.
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China.
| | - Shuang Li
- Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China
- University of Chinese Academy of Sciences, Beijing 100093, China
| | - Jianting Yao
- Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China
| | - Zhanru Shao
- Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China
| | - Delin Duan
- Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China.
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China.
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18
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González-Fernández C, Toullec J, Lambert C, Le Goïc N, Seoane M, Moriceau B, Huvet A, Berchel M, Vincent D, Courcot L, Soudant P, Paul-Pont I. Do transparent exopolymeric particles (TEP) affect the toxicity of nanoplastics on Chaetoceros neogracile? ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 250:873-882. [PMID: 31085473 DOI: 10.1016/j.envpol.2019.04.093] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Revised: 04/17/2019] [Accepted: 04/18/2019] [Indexed: 06/09/2023]
Abstract
The potential presence of nanoplastics (NP) in aquatic environments represents a growing concern regarding their possible effects on aquatic organisms. The objective of this study was to assess the impact of polystyrene (PS) amino-modified particles (50 nm PSNH2) on the cellular and metabolic responses of the diatom Chaetoceros neogracile cultures at two essential phases of the growth cycle, i.e. exponential (division) and stationary (storage) phases. Both cultures were exposed for 4 days to low (0.05 μg mL-1) and high (5 μg mL-1) concentrations of PS-NH2. Exposure to NP impaired more drastically the major cellular and physiological parameters during exponential phase than during the stationary phase. Only an increase in ROS production was observed at both culture phases following NP exposures. In exponential phase cultures, large decreases in chlorophyll content, esterase activity, cellular growth and photosynthetic efficiency were recorded upon NP exposure, which could have consequences on the diatoms life cycle and higher food-web levels. The observed differential responses to NP exposure according to culture phase could reflect i) the higher concentration of Transparent Exopolymer Particles (TEP) at stationary phase leading to NP aggregation and thus, probably minimizing NP effects, and/or ii) the fact that dividing cells during exponential phase may be intrinsically more sensitive to stress. This work evidenced the importance of algae physiological state for assessing the NP impacts with interactions between NP and TEP being one key factor affecting the fate of NP in algal media and their impact to algal' cells.
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Affiliation(s)
- Carmen González-Fernández
- Laboratoire des Sciences de L'Environnement Marin (LEMAR), UMR 6539 CNRS/UBO/IRD/IFREMER, Institut Universitaire Européen de La Mer (IUEM), Rue Dumont D'Urville, 29280, Plouzané, France
| | - Jordan Toullec
- Laboratoire des Sciences de L'Environnement Marin (LEMAR), UMR 6539 CNRS/UBO/IRD/IFREMER, Institut Universitaire Européen de La Mer (IUEM), Rue Dumont D'Urville, 29280, Plouzané, France
| | - Christophe Lambert
- Laboratoire des Sciences de L'Environnement Marin (LEMAR), UMR 6539 CNRS/UBO/IRD/IFREMER, Institut Universitaire Européen de La Mer (IUEM), Rue Dumont D'Urville, 29280, Plouzané, France
| | - Nelly Le Goïc
- Laboratoire des Sciences de L'Environnement Marin (LEMAR), UMR 6539 CNRS/UBO/IRD/IFREMER, Institut Universitaire Européen de La Mer (IUEM), Rue Dumont D'Urville, 29280, Plouzané, France
| | - Marta Seoane
- Laboratoire des Sciences de L'Environnement Marin (LEMAR), UMR 6539 CNRS/UBO/IRD/IFREMER, Institut Universitaire Européen de La Mer (IUEM), Rue Dumont D'Urville, 29280, Plouzané, France
| | - Brivaela Moriceau
- Laboratoire des Sciences de L'Environnement Marin (LEMAR), UMR 6539 CNRS/UBO/IRD/IFREMER, Institut Universitaire Européen de La Mer (IUEM), Rue Dumont D'Urville, 29280, Plouzané, France
| | - Arnaud Huvet
- Ifremer, Laboratoire des Sciences de L'Environnement Marin (LEMAR), CS 10070, 29280, Plouzané, France
| | - Mathieu Berchel
- CEMCA, UMR CNRS 6521, IBSAM, UFR Sciences, Université de Bretagne Occidentale, 6 Avenue Victor Le Gorgeu, 29238, Brest, France
| | - Dorothée Vincent
- Univ. Littoral Côte D'Opale, Univ. Lille, CNRS, UMR 8187, LOG, Laboratoire D'Océanologie et de Géosciences, 32 Avenue Foch, F-62930, Wimereux, France
| | - Lucie Courcot
- Univ. Littoral Côte D'Opale, Univ. Lille, CNRS, UMR 8187, LOG, Laboratoire D'Océanologie et de Géosciences, 32 Avenue Foch, F-62930, Wimereux, France
| | - Philippe Soudant
- Laboratoire des Sciences de L'Environnement Marin (LEMAR), UMR 6539 CNRS/UBO/IRD/IFREMER, Institut Universitaire Européen de La Mer (IUEM), Rue Dumont D'Urville, 29280, Plouzané, France
| | - Ika Paul-Pont
- Laboratoire des Sciences de L'Environnement Marin (LEMAR), UMR 6539 CNRS/UBO/IRD/IFREMER, Institut Universitaire Européen de La Mer (IUEM), Rue Dumont D'Urville, 29280, Plouzané, France.
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19
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Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes. Proc Natl Acad Sci U S A 2019; 116:6914-6923. [PMID: 30872488 DOI: 10.1073/pnas.1819976116] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The division of life into producers and consumers is blurred by evolution. For example, eukaryotic phototrophs can lose the capacity to photosynthesize, although they may retain vestigial plastids that perform other essential cellular functions. Chrysophyte algae have undergone a particularly large number of photosynthesis losses. Here, we present a plastid genome sequence from a nonphotosynthetic chrysophyte, "Spumella" sp. NIES-1846, and show that it has retained a nearly identical set of plastid-encoded functions as apicomplexan parasites. Our transcriptomic analysis of 12 different photosynthetic and nonphotosynthetic chrysophyte lineages reveals remarkable convergence in the functions of these nonphotosynthetic plastids, along with informative lineage-specific retentions and losses. At one extreme, Cornospumella fuschlensis retains many photosynthesis-associated proteins, although it appears to have lost the reductive pentose phosphate pathway and most plastid amino acid metabolism pathways. At the other extreme, Paraphysomonas lacks plastid-targeted proteins associated with gene expression and all metabolic pathways that require plastid-encoded partners, indicating a complete loss of plastid DNA in this genus. Intriguingly, some of the nucleus-encoded proteins that once functioned in the expression of the Paraphysomonas plastid genome have been retained. These proteins were likely to have been dual targeted to the plastid and mitochondria of the chrysophyte ancestor, and are uniquely targeted to the mitochondria in Paraphysomonas Our comparative analyses provide insights into the process of functional reduction in nonphotosynthetic plastids.
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20
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Shao Z, Thomas Y, Hembach L, Xing X, Duan D, Moerschbacher BM, Bulone V, Tirichine L, Bowler C. Comparative characterization of putative chitin deacetylases from Phaeodactylum tricornutum and Thalassiosira pseudonana highlights the potential for distinct chitin-based metabolic processes in diatoms. THE NEW PHYTOLOGIST 2019; 221:1890-1905. [PMID: 30288745 DOI: 10.1111/nph.15510] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2018] [Accepted: 09/23/2018] [Indexed: 06/08/2023]
Abstract
Chitin is generally considered to be present in centric diatoms but not in pennate species. Many aspects of chitin biosynthetic pathways have not been explored in diatoms. We retrieved chitin metabolic genes from pennate (Phaeodactylum tricornutum) and centric (Thalassiosira pseudonana) diatom genomes. Chitin deacetylase (CDA) genes from each genome (PtCDA and TpCDA) were overexpressed in P. tricornutum. We performed comparative analysis of their sequence structure, phylogeny, transcriptional profiles, localization and enzymatic activities. The chitin relevant proteins show complex subcellular compartmentation. PtCDA was likely acquired by horizontal gene transfer from prokaryotes, whereas TpCDA has closer relationships with sequences in Opisthokonta. Using transgenic P. tricornutum lines expressing CDA-green fluorescent protein (GFP) fusion proteins, PtCDA predominantly localizes to Golgi apparatus whereas TpCDA localizes to endoplasmic reticulum/chloroplast endoplasmic reticulum membrane. CDA-GFP overexpression upregulated the transcription of chitin synthases and potentially enhanced the ability of chitin synthesis. Although both CDAs are active on GlcNAc5 , TpCDA is more active on the highly acetylated chitin polymer DA60. We have addressed the ambiguous characters of CDAs from P. tricornutum and T. pseudonana. Differences in localization, evolution, expression and activities provide explanations underlying the greater potential of centric diatoms for chitin biosynthesis. This study paves the way for in vitro applications of novel CDAs.
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Affiliation(s)
- Zhanru Shao
- CAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, 266071, Qingdao, China
- Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Research University, 75005, Paris, France
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, 266237, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, 266071, Qingdao, China
| | - Yann Thomas
- Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Research University, 75005, Paris, France
| | - Lea Hembach
- Institute of Plant Biology and Biotechnology, Westphalian Wilhelm's-University Münster, 48143, Münster, Germany
| | - Xiaohui Xing
- Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA 5064, Australia
- Adelaide Glycomics, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA 5064, Australia
- Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, Stockholm, SE10691, Sweden
| | - Delin Duan
- CAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, 266071, Qingdao, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, 266237, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, 266071, Qingdao, China
| | - Bruno M Moerschbacher
- Institute of Plant Biology and Biotechnology, Westphalian Wilhelm's-University Münster, 48143, Münster, Germany
| | - Vincent Bulone
- Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA 5064, Australia
- Adelaide Glycomics, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA 5064, Australia
- Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, Stockholm, SE10691, Sweden
| | - Leila Tirichine
- Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Research University, 75005, Paris, France
| | - Chris Bowler
- Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Research University, 75005, Paris, France
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21
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Matsui H, Hopkinson BM, Nakajima K, Matsuda Y. Plasma Membrane-Type Aquaporins from Marine Diatoms Function as CO 2/NH 3 Channels and Provide Photoprotection. PLANT PHYSIOLOGY 2018; 178:345-357. [PMID: 30076224 PMCID: PMC6130027 DOI: 10.1104/pp.18.00453] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2018] [Accepted: 07/26/2018] [Indexed: 05/19/2023]
Abstract
Aquaporins (AQPs) are ubiquitous water channels that facilitate the transport of many small molecules and may play multiple vital roles in aquatic environments. In particular, mechanisms to maintain transmembrane fluxes of important small molecules have yet to be studied in marine photoautotrophic organisms. Here, we report the occurrence of multiple AQPs with differential cellular localizations in marine diatoms, an important group of oceanic primary producers. The AQPs play a role in mediating the permeability of membranes to CO2 and NH3 In silico surveys revealed the presence of five AQP orthologs in the pennate diatom Phaeodactylum tricornutum and two in the centric diatom Thalassiosira pseudonana GFP fusions of putative AQPs displayed clear localization to the plasma membrane (PtAGP1 and PtAQP2), the chloroplast endoplasmic reticulum (CER; PtAGP1 and PtAQP3), and the tonoplast (PtAQP5) in P. tricornutum In T. pseudonana, GFP-AQP fusion proteins were found on the vacuole membrane (TpAQP1) and CER (TpAQP2). Transcript levels of both PtAQP1 and PtAQP2 were highly induced by ammonia, while only PtAQP2 was induced by high (1%[v/v]) CO2 Constitutive overexpression of GFP-tagged PtAQP1 and PtAQP2 significantly increased CO2 and NH3 permeability in P. tricornutum, strongly indicating that these AQPs function in regulating CO2/NH3 permeability in the plasma membrane and/or CER. Cells carrying GFP-tagged PtAQP1 and PtAQP2 had higher nonphotochemical quenching under high light relative to that of wild-type cells, suggesting that these AQPs are involved in photoprotection. These AQPs may facilitate the efflux of NH3, preventing the uncoupling effect of high intracellular ammonia concentrations.
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Affiliation(s)
- Hiroaki Matsui
- Department of Bioscience, Kwansei-Gakuin University, Sanda, Hyogo, Japan 669-1337
| | - Brian M Hopkinson
- Department of Marine Sciences, University of Georgia, Athens, Georgia 30602
| | - Kensuke Nakajima
- Department of Bioscience, Kwansei-Gakuin University, Sanda, Hyogo, Japan 669-1337
| | - Yusuke Matsuda
- Department of Bioscience, Kwansei-Gakuin University, Sanda, Hyogo, Japan 669-1337
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22
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Bedoshvili YD, Gneusheva KV, Popova MS, Avezova TN, Arsentyev KY, Likhoshway YV. Frustule morphogenesis of raphid pennate diatom Encyonema ventricosum (Agardh) Grunow. PROTOPLASMA 2018; 255:911-921. [PMID: 29270874 DOI: 10.1007/s00709-017-1199-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2017] [Accepted: 12/15/2017] [Indexed: 06/07/2023]
Abstract
Diatoms stand out among other microalgae due to the high diversity of species-specific silica frustules whose components (valves and girdle bands) are formed within the cell in special organelles called silica deposition vesicles (SDVs). Research on cell structure and morphogenesis of frustule elements in diatoms of different taxonomic groups has been carried out since the 1950s but is still relevant today. Here, cytological features and valve morphogenesis in the freshwater raphid pennate diatom Encyonema ventricosum (Agardh) Grunow have been studied using light and transmission electron microscopy of cleaned frustules and ultrathin sections of cells, and scanning electron and atomic force microscopy of the frustule surface. Data have been obtained on chloroplast structure: the pyrenoid is spherical, penetrated by a lamella (a stack of two thylakoids); the girdle lamella consists of several short lamellae. The basic stages of frustule morphogenesis characteristic of raphid pennate diatoms have been traced, with the presence of cytoskeletal elements near SDVs being observed throughout this process. Degradation of the plasmalemma and silicalemma is shown to take place when the newly formed valve is released into the space between sister cells. The role of vesicular transport and exocytosis in the gliding of pennate diatoms is discussed.
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Affiliation(s)
- Yekaterina D Bedoshvili
- Limnological Institute, Siberian Branch, Russian Academy of Sciences, 3 Ulan-Batorskaya St., Irkutsk, Russia, 664033.
| | - Ksenia V Gneusheva
- Limnological Institute, Siberian Branch, Russian Academy of Sciences, 3 Ulan-Batorskaya St., Irkutsk, Russia, 664033
| | - Maria S Popova
- Limnological Institute, Siberian Branch, Russian Academy of Sciences, 3 Ulan-Batorskaya St., Irkutsk, Russia, 664033
| | - Tatyana N Avezova
- Limnological Institute, Siberian Branch, Russian Academy of Sciences, 3 Ulan-Batorskaya St., Irkutsk, Russia, 664033
| | - Kirill Yu Arsentyev
- Limnological Institute, Siberian Branch, Russian Academy of Sciences, 3 Ulan-Batorskaya St., Irkutsk, Russia, 664033
| | - Yelena V Likhoshway
- Limnological Institute, Siberian Branch, Russian Academy of Sciences, 3 Ulan-Batorskaya St., Irkutsk, Russia, 664033
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23
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Kotzsch A, Gröger P, Pawolski D, Bomans PHH, Sommerdijk NAJM, Schlierf M, Kröger N. Silicanin-1 is a conserved diatom membrane protein involved in silica biomineralization. BMC Biol 2017; 15:65. [PMID: 28738898 PMCID: PMC5525289 DOI: 10.1186/s12915-017-0400-8] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2017] [Accepted: 06/28/2017] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Biological mineral formation (biomineralization) proceeds in specialized compartments often bounded by a lipid bilayer membrane. Currently, the role of membranes in biomineralization is hardly understood. RESULTS Investigating biomineralization of SiO2 (silica) in diatoms we identified Silicanin-1 (Sin1) as a conserved diatom membrane protein present in silica deposition vesicles (SDVs) of Thalassiosira pseudonana. Fluorescence microscopy of GFP-tagged Sin1 enabled, for the first time, to follow the intracellular locations of a biomineralization protein during silica biogenesis in vivo. The analysis revealed incorporation of the N-terminal domain of Sin1 into the biosilica via association with the organic matrix inside the SDVs. In vitro experiments showed that the recombinant N-terminal domain of Sin1 undergoes pH-triggered assembly into large clusters, and promotes silica formation by synergistic interaction with long-chain polyamines. CONCLUSIONS Sin1 is the first identified SDV transmembrane protein, and is highly conserved throughout the diatom realm, which suggests a fundamental role in the biomineralization of diatom silica. Through interaction with long-chain polyamines, Sin1 could serve as a molecular link by which the SDV membrane exerts control on the assembly of biosilica-forming organic matrices in the SDV lumen.
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Affiliation(s)
- Alexander Kotzsch
- B CUBE Center for Molecular Bioengineering, CMCB, TU Dresden, Arnoldstrasse 18, 01307, Dresden, Germany
| | - Philip Gröger
- B CUBE Center for Molecular Bioengineering, CMCB, TU Dresden, Arnoldstrasse 18, 01307, Dresden, Germany
| | - Damian Pawolski
- B CUBE Center for Molecular Bioengineering, CMCB, TU Dresden, Arnoldstrasse 18, 01307, Dresden, Germany
| | - Paul H H Bomans
- Department of Chemical Engineering and Chemistry, Laboratory of Materials and Interface Chemistry & Center of Multiscale Electron Microscopy, P.O. Box 513, 5600 MB, Eindhoven, The Netherlands.,Institute for Complex Molecular Systems, Eindhoven University of Technology, P.O. Box 513, 5600 MB, Eindhoven, The Netherlands
| | - Nico A J M Sommerdijk
- Department of Chemical Engineering and Chemistry, Laboratory of Materials and Interface Chemistry & Center of Multiscale Electron Microscopy, P.O. Box 513, 5600 MB, Eindhoven, The Netherlands.,Institute for Complex Molecular Systems, Eindhoven University of Technology, P.O. Box 513, 5600 MB, Eindhoven, The Netherlands
| | - Michael Schlierf
- B CUBE Center for Molecular Bioengineering, CMCB, TU Dresden, Arnoldstrasse 18, 01307, Dresden, Germany
| | - Nils Kröger
- B CUBE Center for Molecular Bioengineering, CMCB, TU Dresden, Arnoldstrasse 18, 01307, Dresden, Germany. .,Department of Chemistry and Food Chemistry, TU Dresden, 01062, Dresden, Germany.
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24
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De Tommasi E, Gielis J, Rogato A. Diatom Frustule Morphogenesis and Function: a Multidisciplinary Survey. Mar Genomics 2017; 35:1-18. [PMID: 28734733 DOI: 10.1016/j.margen.2017.07.001] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Revised: 07/05/2017] [Accepted: 07/06/2017] [Indexed: 01/08/2023]
Abstract
Diatoms represent the major component of phytoplankton and are responsible for about 20-25% of global primary production. Hundreds of millions of years of evolution led to tens of thousands of species differing in dimensions and morphologies. In particular, diatom porous silica cell walls, the frustules, are characterized by an extraordinary, species-specific diversity. It is of great interest, among the marine biologists and geneticists community, to shed light on the origin and evolutionary advantage of this variability of dimensions, geometries and pore distributions. In the present article the main reported data related to frustule morphogenesis and functionalities with contributions from fundamental biology, genetics, mathematics, geometry and physics are reviewed.
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Affiliation(s)
- Edoardo De Tommasi
- Institute for Microelectronics and Microsystems, CNR, Via P. Castellino 111, 80131 Naples, Italy
| | - Johan Gielis
- University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium
| | - Alessandra Rogato
- Institute of Biosciences and BioResources, CNR, Via P. Castellino 111, 80131 Naples, Italy; Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale 1, 80121 Naples, Italy.
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25
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Dorrell RG, Gile G, McCallum G, Méheust R, Bapteste EP, Klinger CM, Brillet-Guéguen L, Freeman KD, Richter DJ, Bowler C. Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome. eLife 2017; 6. [PMID: 28498102 PMCID: PMC5462543 DOI: 10.7554/elife.23717] [Citation(s) in RCA: 99] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2016] [Accepted: 05/08/2017] [Indexed: 12/18/2022] Open
Abstract
Plastids are supported by a wide range of proteins encoded within the nucleus and imported from the cytoplasm. These plastid-targeted proteins may originate from the endosymbiont, the host, or other sources entirely. Here, we identify and characterise 770 plastid-targeted proteins that are conserved across the ochrophytes, a major group of algae including diatoms, pelagophytes and kelps, that possess plastids derived from red algae. We show that the ancestral ochrophyte plastid proteome was an evolutionary chimera, with 25% of its phylogenetically tractable nucleus-encoded proteins deriving from green algae. We additionally show that functional mixing of host and plastid proteomes, such as through dual-targeting, is an ancestral feature of plastid evolution. Finally, we detect a clear phylogenetic signal from one ochrophyte subgroup, the lineage containing pelagophytes and dictyochophytes, in plastid-targeted proteins from another major algal lineage, the haptophytes. This may represent a possible serial endosymbiosis event deep in eukaryotic evolutionary history. DOI:http://dx.doi.org/10.7554/eLife.23717.001 The cells of most plants and algae contain compartments called chloroplasts that enable them to capture energy from sunlight in a process known as photosynthesis. Chloroplasts are the remnants of photosynthetic bacteria that used to live freely in the environment until they were consumed by a larger cell. “Complex” chloroplasts can form if a cell that already has a chloroplast is swallowed by another cell. The most abundant algae in the oceans are known as diatoms. These algae belong to a group called the stramenopiles, which also includes giant seaweeds such as kelp. The stramenopiles have a complex chloroplast that they acquired from a red alga (a relative of the seaweed used in sushi). However, some of the proteins in their chloroplasts are from other sources, such as the green algal relatives of plants, and it was not clear how these chloroplast proteins have contributed to the evolution of this group. Many of the proteins that chloroplasts need to work properly are produced by the host cell and are then transported into the chloroplasts. Dorrell et al. studied the genetic material of many stramenopile species and identified 770 chloroplast-targeted proteins that are predicted to underpin the origins of this group. Experiments in a diatom called Phaeodactylum confirmed these predictions and show that many of these chloroplast-targeted proteins have been recruited from green algae, bacteria, and other compartments within the host cell to support the chloroplast. Further experiments suggest that another major group of algae called the haptophytes once had a stramenopile chloroplast. The current haptophyte chloroplast does not come from the stramenopiles so the haptophytes appear to have replaced their chloroplasts at least once in their evolutionary history. The findings show that algal chloroplasts are mosaics, supported by proteins from many different species. This helps us understand why certain species succeed in the wild and how they may respond to environmental changes in the oceans. In the future, these findings may help researchers to engineer new species of algae and plants for food and fuel production. DOI:http://dx.doi.org/10.7554/eLife.23717.002
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Affiliation(s)
- Richard G Dorrell
- IBENS, Département de Biologie, École Normale Supérieure, CNRS, Inserm, PSL Research University, Paris, France
| | - Gillian Gile
- School of Life Sciences, Arizona State University, Tempe, United States
| | - Giselle McCallum
- IBENS, Département de Biologie, École Normale Supérieure, CNRS, Inserm, PSL Research University, Paris, France
| | - Raphaël Méheust
- Institut de Biologie Paris-Seine, Université Pierre et Marie Curie, Paris, France
| | - Eric P Bapteste
- Institut de Biologie Paris-Seine, Université Pierre et Marie Curie, Paris, France
| | | | | | | | - Daniel J Richter
- Sorbonne Universités, Université Pierre et Marie Curie, CNRS UMR 7144.,Adaptation et Diversité en Milieu Marin, Équipe EPEP, Station Biologique de Roscoff, Roscoff, France
| | - Chris Bowler
- IBENS, Département de Biologie, École Normale Supérieure, CNRS, Inserm, PSL Research University, Paris, France
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26
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Dell'Aquila G, Ferrante MI, Gherardi M, Cosentino Lagomarsino M, Ribera d'Alcalà M, Iudicone D, Amato A. Nutrient consumption and chain tuning in diatoms exposed to storm-like turbulence. Sci Rep 2017; 7:1828. [PMID: 28500335 PMCID: PMC5431809 DOI: 10.1038/s41598-017-02084-6] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2016] [Accepted: 04/07/2017] [Indexed: 11/09/2022] Open
Abstract
Current information on the response of phytoplankton to turbulence is linked to cell size and nutrient availability. Diatoms are considered to be favored by mixing as dissolved nutrients are more easily accessible for non-motile cells. We investigated how diatoms exploit microscale turbulence under nutrient repletion and depletion conditions. Here, we show that the chain-forming diatom Chaetoceros decipiens, continues to take up phosphorus and carbon even when silicon is depleted during turbulence. Our findings indicate that upon silica depletion, during turbulence, chain spectra of C. decipiens remained unchanged. We show here that longer chains are maintained during turbulence upon silica depletion whereas under still conditions, shorter chains are enriched. We interpret this as a sign of good physiological state leading to a delay of culture senescence. Our results show that C. decipiens senses and responds to turbulence both in nutrient repletion and depletion. This response is noteworthy due to the small size of the species. The coupling between turbulence and biological response that we depict here may have significant ecological implications. Considering the predicted increase of storms in Northern latitudes this response might modify community structure and succession. Our results partly corroborate Margalef's mandala and provide additional explanations for that conceptualization.
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Affiliation(s)
- Gianluca Dell'Aquila
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, 80121, Naples, Italy.,Zellbiologie Philipps-Universität Marburg, Karl-von-Frisch Str., 8 35043, Marburg, Germany
| | - Maria I Ferrante
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, 80121, Naples, Italy
| | - Marco Gherardi
- Dipartimento di Fisica, Università di Milano, Via Celoria 16, 20133, Milan, Italy.,UMR 7238 CNRS Computational and Quantitative Biology, University Pierre et Marie Curie, 15, rue de l'Ecole de Médecine, 75006, Paris, France
| | - Marco Cosentino Lagomarsino
- UMR 7238 CNRS Computational and Quantitative Biology, University Pierre et Marie Curie, 15, rue de l'Ecole de Médecine, 75006, Paris, France
| | - Maurizio Ribera d'Alcalà
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, 80121, Naples, Italy
| | - Daniele Iudicone
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, 80121, Naples, Italy.
| | - Alberto Amato
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, 80121, Naples, Italy. .,Laboratoire de Physiologie Cellulaire et Végétale, UMR5168 CNRS-CEA-INRA-Université de Grenoble Alpes, Institut de Recherche en Science et Technologies pour le Vivant, CEA Grenoble, 17 rue des Martyrs, 38054, Grenoble Cédex 9, France.
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27
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Thompson SEM, Coates JC. Surface sensing and stress-signalling in Ulva and fouling diatoms - potential targets for antifouling: a review. BIOFOULING 2017; 33:410-432. [PMID: 28508711 DOI: 10.1080/08927014.2017.1319473] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2016] [Accepted: 04/11/2017] [Indexed: 06/07/2023]
Abstract
Understanding the underlying signalling pathways that enable fouling algae to sense and respond to surfaces is essential in the design of environmentally friendly coatings. Both the green alga Ulva and diverse diatoms are important ecologically and economically as they are persistent biofoulers. Ulva spores exhibit rapid secretion, allowing them to adhere quickly and permanently to a ship, whilst diatoms secrete an abundance of extracellular polymeric substances (EPS), which are highly adaptable to different environmental conditions. There is evidence, now supported by molecular data, for complex calcium and nitric oxide (NO) signalling pathways in both Ulva and diatoms being involved in surface sensing and/or adhesion. Moreover, adaptation to stress has profound effects on the biofouling capability of both types of organism. Targets for future antifouling coatings based on surface sensing are discussed, with an emphasis on pursuing NO-releasing coatings as a potentially universal antifouling strategy.
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Affiliation(s)
| | - Juliet C Coates
- a School of Biosciences , University of Birmingham , Birmingham , UK
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28
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Gherardi M, Amato A, Bouly JP, Cheminant S, Ferrante MI, d'Alcalá MR, Iudicone D, Falciatore A, Cosentino Lagomarsino M. Regulation of chain length in two diatoms as a growth-fragmentation process. Phys Rev E 2016; 94:022418. [PMID: 27627344 DOI: 10.1103/physreve.94.022418] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2016] [Indexed: 11/07/2022]
Abstract
Chain formation in diatoms is relevant because of several aspects of their adaptation to the ecosystem. However, the tools to quantify the regulation of their assemblage and infer specific mechanisms in a laboratory setting are scarce. To address this problem, we define an approach based on a statistical physics model of chain growth and separation in combination with experimental evaluation of chain-length distributions. Applying this combined analysis to data from Chaetoceros decipiens and Phaeodactylum tricornutum, we find that cells of the first species control chain separation, likely through a cell-to-cell communication process, while the second species only modulates the separation rate. These results promote quantitative methods for characterizing chain formation in several chain-forming species and in diatoms in particular.
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Affiliation(s)
- Marco Gherardi
- Dipartimento di Fisica, University of Milano, Via Celoria 16, Milano, Italy.,INFN, Milano, Italy.,Sorbonne Universités, UPMC Université Paris 6, UMR 7238, Computational and Quantitative Biology, 15 rue de l'École de Médecine, Paris, France
| | - Alberto Amato
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, Naples, Italy
| | - Jean-Pierre Bouly
- Sorbonne Universités, UPMC Université Paris 6, UMR 7238, Computational and Quantitative Biology, 15 rue de l'École de Médecine, Paris, France
| | - Soizic Cheminant
- Sorbonne Universités, UPMC Université Paris 6, UMR 7238, Computational and Quantitative Biology, 15 rue de l'École de Médecine, Paris, France
| | - Maria Immacolata Ferrante
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, Naples, Italy
| | - Maurizio Ribera d'Alcalá
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, Naples, Italy
| | - Daniele Iudicone
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Villa Comunale, Naples, Italy
| | - Angela Falciatore
- Sorbonne Universités, UPMC Université Paris 6, UMR 7238, Computational and Quantitative Biology, 15 rue de l'École de Médecine, Paris, France.,CNRS, UMR 7238, Paris, France
| | - Marco Cosentino Lagomarsino
- Sorbonne Universités, UPMC Université Paris 6, UMR 7238, Computational and Quantitative Biology, 15 rue de l'École de Médecine, Paris, France.,CNRS, UMR 7238, Paris, France
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29
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Hehenberger E, Burki F, Kolisko M, Keeling PJ. Functional Relationship between a Dinoflagellate Host and Its Diatom Endosymbiont. Mol Biol Evol 2016; 33:2376-90. [DOI: 10.1093/molbev/msw109] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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30
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Flori S, Jouneau PH, Finazzi G, Maréchal E, Falconet D. Ultrastructure of the Periplastidial Compartment of the Diatom Phaeodactylum tricornutum. Protist 2016; 167:254-67. [DOI: 10.1016/j.protis.2016.04.001] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2015] [Revised: 04/04/2016] [Accepted: 04/16/2016] [Indexed: 11/16/2022]
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