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Hessler T, Harrison ST, Banfield JF, Huddy RJ. Harnessing Fermentation May Enhance the Performance of Biological Sulfate-Reducing Bioreactors. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:2830-2846. [PMID: 38301118 PMCID: PMC10867827 DOI: 10.1021/acs.est.3c04187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 12/28/2023] [Accepted: 01/08/2024] [Indexed: 02/03/2024]
Abstract
Biological sulfate reduction (BSR) represents a promising strategy for bioremediation of sulfate-rich waste streams, yet the impact of metabolic interactions on performance is largely unexplored. Here, genome-resolved metagenomics was used to characterize 17 microbial communities in reactors treating synthetic sulfate-contaminated solutions. Reactors were supplemented with lactate or acetate and a small amount of fermentable substrate. Of the 163 genomes representing all the abundant bacteria, 130 encode 321 NiFe and FeFe hydrogenases and all genomes of the 22 sulfate-reducing microorganisms (SRM) encode genes for H2 uptake. We observed lactate oxidation solely in the first packed bed reactor zone, with propionate and acetate oxidation in the middle and predominantly acetate oxidation in the effluent zone. The energetics of these reactions are very different, yet sulfate reduction kinetics were unaffected by the type of electron donor available. We hypothesize that the comparable rates, despite the typically slow growth of SRM on acetate, are a result of the consumption of H2 generated by fermentation. This is supported by the sustained performance of a predominantly acetate-supplemented stirred tank reactor dominated by diverse fermentative bacteria encoding FeFe hydrogenase genes and SRM capable of acetate and hydrogen consumption and CO2 assimilation. Thus, addition of fermentable substrates to stimulate syntrophic relationships may improve the performance of BSR reactors supplemented with inexpensive acetate.
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Affiliation(s)
- Tomas Hessler
- The
Center for Bioprocess Engineering Research, University of Cape Town, Cape Town 7700, South Africa
- Department
of Chemical Engineering, University of Cape
Town, Cape Town 7700, South Africa
- The
Innovative Genomics Institute at the University of California, Berkeley, California CA94720, United
States
- The
Department of Earth and Planetary Science, University of California, Berkeley, California CA94720, United States
- Environmental
Genomics and Systems Biology Division, Lawrence
Berkeley National Laboratory, Berkeley, California CA94720, United States
| | - Susan T.L. Harrison
- The
Center for Bioprocess Engineering Research, University of Cape Town, Cape Town 7700, South Africa
- Department
of Chemical Engineering, University of Cape
Town, Cape Town 7700, South Africa
- The Future
Water Institute, University of Cape Town, Cape Town 7700, South Africa
| | - Jillian F. Banfield
- The
Innovative Genomics Institute at the University of California, Berkeley, California CA94720, United
States
- The
Department of Earth and Planetary Science, University of California, Berkeley, California CA94720, United States
- The
Department of Environmental Science, Policy and Management, University of California, Berkeley, California CA94720, United States
| | - Robert J. Huddy
- The
Center for Bioprocess Engineering Research, University of Cape Town, Cape Town 7700, South Africa
- Department
of Chemical Engineering, University of Cape
Town, Cape Town 7700, South Africa
- The Future
Water Institute, University of Cape Town, Cape Town 7700, South Africa
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Basic A, Dahlén G. Microbial metabolites in the pathogenesis of periodontal diseases: a narrative review. FRONTIERS IN ORAL HEALTH 2023; 4:1210200. [PMID: 37388417 PMCID: PMC10300593 DOI: 10.3389/froh.2023.1210200] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Accepted: 05/31/2023] [Indexed: 07/01/2023] Open
Abstract
The purpose of this narrative review is to highlight the importance of microbial metabolites in the pathogenesis of periodontal diseases. These diseases, involving gingivitis and periodontitis are inflammatory conditions initiated and maintained by the polymicrobial dental plaque/biofilm. Gingivitis is a reversible inflammatory condition while periodontitis involves also irreversible destruction of the periodontal tissues including the alveolar bone. The inflammatory response of the host is a natural reaction to the formation of plaque and the continuous release of metabolic waste products. The microorganisms grow in a nutritious and shielded niche in the periodontal pocket, protected from natural cleaning forces such as saliva. It is a paradox that the consequences of the enhanced inflammatory reaction also enable more slow-growing, fastidious, anaerobic bacteria, with often complex metabolic pathways, to colonize and thrive. Based on complex food chains, nutrient networks and bacterial interactions, a diverse microbial community is formed and established in the gingival pocket. This microbiota is dominated by anaerobic, often motile, Gram-negatives with proteolytic metabolism. Although this alternation in bacterial composition often is considered pathologic, it is a natural development that is promoted by ecological factors and not necessarily a true "dysbiosis". Normal commensals are adapting to the gingival crevice when tooth cleaning procedures are absent. The proteolytic metabolism is highly complex and involves a number of metabolic pathways with production of a cascade of metabolites in an unspecific manner. The metabolites involve short chain fatty acids (SCFAs; formic, acetic, propionic, butyric, and valeric acid), amines (indole, scatole, cadaverine, putrescine, spermine, spermidine) and gases (NH3, CO, NO, H2S, H2). A homeostatic condition is often present between the colonizers and the host response, where continuous metabolic fluctuations are balanced by the inflammatory response. While it is well established that the effect of the dental biofilm on the host response and tissue repair is mediated by microbial metabolites, the mechanisms behind the tissue destruction (loss of clinical attachment and bone) are still poorly understood. Studies addressing the functions of the microbiota, the metabolites, and how they interplay with host tissues and cells, are therefore warranted.
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Din I, Khan S, Hesham AEL, Irum S, Daqiang C. Mine Wastewater Treatment with Upflow Anaerobic Fixed Film Reactors. MINE WATER AND THE ENVIRONMENT 2023; 42:340-347. [DOI: 10.1007/s10230-023-00929-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Accepted: 03/23/2023] [Indexed: 09/02/2023]
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Dai S, Harnisch F, Bin-Hudari MS, Keller NS, Vogt C, Korth B. Improving the performance of bioelectrochemical sulfate removal by applying flow mode. Microb Biotechnol 2023; 16:595-604. [PMID: 36259447 PMCID: PMC9948226 DOI: 10.1111/1751-7915.14157] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Revised: 09/19/2022] [Accepted: 09/26/2022] [Indexed: 11/26/2022] Open
Abstract
Treatment of wastewater contaminated with high sulfate concentrations is an environmental imperative lacking a sustainable and environmental friendly technological solution. Microbial electrochemical technology (MET) represents a promising approach for sulfate reduction. In MET, a cathode is introduced as inexhaustible electron source for promoting sulfate reduction via direct or mediated electron transfer. So far, this is mainly studied in batch mode representing straightforward and easy-to-use systems, but their practical implementation seems unlikely, as treatment capacities are limited. Here, we investigated bioelectrochemical sulfate reduction in flow mode and achieved removal efficiencies (Esulfate , 89.2 ± 0.4%) being comparable to batch experiments, while sulfate removal rates (Rsulfate , 3.1 ± 0.2 mmol L-1 ) and Coulombic efficiencies (CE, 85.2 ± 17.7%) were significantly increased. Different temperatures and hydraulic retention times (HRT) were applied and the best performance was achieved at HRT 3.5 days and 30°C. Microbial community analysis based on amplicon sequencing demonstrated that sulfate reduction was mainly performed by prokaryotes belonging to the genera Desulfomicrobium, Desulfovibrio, and Desulfococcus, indicating that hydrogenotrophic and heterotrophic sulfate reduction occurred by utilizing cathodically produced H2 or acetate produced by homoacetogens (Acetobacterium). The advantage of flow operation for bioelectrochemical sulfate reduction is likely based on higher absolute biomass, stable pH, and selection of sulfate reducers with a higher sulfide tolerance, and improved ratio between sulfate-reducing prokaryotes and homoacetogens.
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Affiliation(s)
- Shixiang Dai
- Department of Environmental Microbiology, Helmholtz Centre for Environmental Research GmbH - UFZ, Leipzig, Germany
| | - Falk Harnisch
- Department of Environmental Microbiology, Helmholtz Centre for Environmental Research GmbH - UFZ, Leipzig, Germany
| | - Mohammad Sufian Bin-Hudari
- Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research GmbH - UFZ, Leipzig, Germany
| | - Nina Sophie Keller
- Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research GmbH - UFZ, Leipzig, Germany
| | - Carsten Vogt
- Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research GmbH - UFZ, Leipzig, Germany
| | - Benjamin Korth
- Department of Environmental Microbiology, Helmholtz Centre for Environmental Research GmbH - UFZ, Leipzig, Germany
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Ostermeyer P, Van Landuyt J, Bonin L, Folens K, Williamson A, Hennebel T, Rabaey K. High rate production of concentrated sulfides from metal bearing wastewater in an expanded bed hydrogenotrophic sulfate reducing bioreactor. ENVIRONMENTAL SCIENCE AND ECOTECHNOLOGY 2022; 11:100173. [PMID: 36158753 PMCID: PMC9488047 DOI: 10.1016/j.ese.2022.100173] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/02/2022] [Revised: 03/28/2022] [Accepted: 03/29/2022] [Indexed: 06/16/2023]
Abstract
Metallurgical wastewaters contain high concentrations of sulfate, up to 15 g L-1. Sulfate-reducing bioreactors are employed to treat these wastewaters, reducing sulfates to sulfides which subsequently co-precipitate metals. Sulfate loading and reduction rates are typically restricted by the total H2S concentration. Sulfide stripping, sulfide precipitation and dilution are the main strategies employed to minimize inhibition by H2S, but can be adversely compromised by suboptimal sulfate reduction, clogging and additional energy costs. Here, metallurgical wastewater was treated for over 250 days using two hydrogenotrophic granular activated carbon expanded bed bioreactors without additional removal of sulfides. H2S toxicity was minimized by operating at pH 8 ± 0.15, resulting in an average sulfate removal of 7.08 ± 0.08 g L-1, sulfide concentrations of 2.1 ± 0.2 g L-1 and peaks up to 2.3 ± 0.2 g L-1. A sulfate reduction rate of 20.6 ± 0.9 g L-1 d-1 was achieved, with maxima up to 27.2 g L-1 d-1, which is among the highest reported considering a literature review of 39 studies. The rates reported here are 6-8 times higher than those reported for other reactors without active sulfide removal and the only reported for expanded bed sulfate-reducing bioreactors using H2. By increasing the influent sulfate concentration and maintaining high sulfide concentrations, sulfate reducers were promoted while fermenters and methanogens were suppressed. Industrial wastewater containing 4.4 g L-1 sulfate, 0.036 g L-1 nitrate and various metals (As, Fe, Tl, Zn, Ni, Sb, Co and Cd) was successfully treated with all metal(loid)s, nitrates and sulfates removed below discharge limits.
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Affiliation(s)
- Pieter Ostermeyer
- Center of Microbial Ecology and Technology (CMET), Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000, Gent, Belgium
- CAPTURE, Frieda Saeysstraat 1, 9000, Gent, Belgium1
www.capture-resources.be
| | - Josefien Van Landuyt
- Center of Microbial Ecology and Technology (CMET), Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000, Gent, Belgium
| | - Luiza Bonin
- Center of Microbial Ecology and Technology (CMET), Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000, Gent, Belgium
- CAPTURE, Frieda Saeysstraat 1, 9000, Gent, Belgium1
www.capture-resources.be
| | - Karel Folens
- Center of Microbial Ecology and Technology (CMET), Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000, Gent, Belgium
| | - Adam Williamson
- Center of Microbial Ecology and Technology (CMET), Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000, Gent, Belgium
- CENBG, Université de Bordeaux, CNRS-IN2P3/, 19 chemin du Solarium, CS10120, 33175, Gradignan, France
| | - Tom Hennebel
- Center of Microbial Ecology and Technology (CMET), Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000, Gent, Belgium
- CAPTURE, Frieda Saeysstraat 1, 9000, Gent, Belgium1
www.capture-resources.be - Umicore, Group Research & Development, Competence Area Recycling and Extraction Technologies, Watertorenstraat 33, B-2250, Olen, Belgium
| | - Korneel Rabaey
- Center of Microbial Ecology and Technology (CMET), Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000, Gent, Belgium
- CAPTURE, Frieda Saeysstraat 1, 9000, Gent, Belgium1
www.capture-resources.be
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Yang H, Li Z, Chen Y, Zhou Z. Role of microparticles in membrane fouling from acidogenesis to methanogenesis phases in an anaerobic baffled reactor. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 806:150663. [PMID: 34597561 DOI: 10.1016/j.scitotenv.2021.150663] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Revised: 09/24/2021] [Accepted: 09/24/2021] [Indexed: 06/13/2023]
Abstract
Microparticles (0.45-10 μm) have been recognized as key foulants in anaerobic membrane bioreactors (AnMBRs). However, their characteristics and fouling behaviors are often understood in single-stage and completely mixed reactors, failing to elucidate the occurrence of microparticles in the multi-stage anaerobic bioprocess. Here, a lab-scale anaerobic baffled reactor with four compartments (C1-C4) was employed to explore the composition and fouling potential of microparticles in different compartments. Photometric analysis showed that the microparticles had an increasing percentage in the total organics of the top supernatant but a decreasing concentration from C1 to C4. Long-term filtration and dead-end filtration tests revealed that the top supernatant in C1 had much higher fouling potential than those in C2-C4. The supernatant microparticles significantly accumulated in the cake layers for each compartment (68-95% of the total organics), particularly the fraction of 1-5 μm, and the fouling rate was positively correlated with the biomass accumulation rate. Based on reactor performance and 16S rRNA gene sequences, a significant bio-phase separation occurred between C1 (acidogenesis) and C2-C4 (methanogenesis). And hydrolytic and fermentative bacteria in the family Veillonellaceae, Streptococcaceae, and Enterobacteriaceae were dominant in the supernatant microparticles, particularly in C1, which had a positive correlation with the fouling rate and biomass accumulation rate. These above results all revealed that the microparticles in the acidogenesis phase had higher fouling potential. In summary, our results suggest that the tactic of pre-hydrolysis and acidification with feedstocks and constructing AnMBRs by coupling with multi-phase anaerobic bioprocesses and membrane units could be beneficial to fouling control.
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Affiliation(s)
- Houlong Yang
- College of Resources and Environment, Southwest University, Chongqing 400715, China; Key Laboratory of Eco-environments in Three Gorges Reservoir Region, Ministry of Education, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Zicong Li
- College of Resources and Environment, Southwest University, Chongqing 400715, China; Key Laboratory of Eco-environments in Three Gorges Reservoir Region, Ministry of Education, College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Yucheng Chen
- College of Resources and Environment, Southwest University, Chongqing 400715, China; Key Laboratory of Eco-environments in Three Gorges Reservoir Region, Ministry of Education, College of Resources and Environment, Southwest University, Chongqing 400715, China; Chongqing Engineering Research Center of Rural Cleaner Production, Chongqing 400715, China
| | - Zhongbo Zhou
- College of Resources and Environment, Southwest University, Chongqing 400715, China; Key Laboratory of Eco-environments in Three Gorges Reservoir Region, Ministry of Education, College of Resources and Environment, Southwest University, Chongqing 400715, China; Chongqing Engineering Research Center of Rural Cleaner Production, Chongqing 400715, China.
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Johnson CR, Antonopoulos DA, Boyanov MI, Flynn TM, Koval JC, Kemner KM, O'Loughlin EJ. Reduction of Sb(V) by coupled biotic-abiotic processes under sulfidogenic conditions. Heliyon 2021; 7:e06275. [PMID: 33681496 PMCID: PMC7930292 DOI: 10.1016/j.heliyon.2021.e06275] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 01/26/2021] [Accepted: 02/09/2021] [Indexed: 01/05/2023] Open
Abstract
Increasing use and mining of antimony (Sb) has resulted in greater concern involving its fate and transport in the environment. Antimony(V) and (III) are the two most environmentally relevant oxidation states, but little is known about the redox transitions between the two in natural systems. To better understand the behavior of antimony in anoxic environments, the redox transformations of Sb(V) were studied in biotic and abiotic reactors. The biotic reactors contained Sb(V) (2 mM as KSb(OH)6), ferrihydrite (50 mM Fe(III)), sulfate (10 mM), and lactate (10 mM), that were inoculated with sediment from a wetland. In the abiotic reactors, The interaction of Sb(V) with green rust, magnetite, siderite, vivianite or mackinawite was examined under abiotic conditions. Changes in the concentrations of Sb, Fe(II), sulfate, and lactate, as well as the microbial community composition were monitored over time. Lactate was rapidly fermented to acetate and propionate in the bioreactors, with the latter serving as the primary electron donor for dissimilatory sulfate reduction (DSR). The reduction of ferrihydrite was primarily abiotic, being driven by biogenic sulfide. Sb and Fe K-edge X-ray absorption near edge structure (XANES) analysis showed reduction of Sb(V) to Sb(III) within 4 weeks, concurrent with DSR and the formation of FeS. Sb K-edge extended X-ray absorption fine structure (EXAFS) spectroscopy analysis indicated that the reduced phase was a mixture of S- and O-coordinated Sb(III). Reduction of Sb(V) was not observed in the presence of magnetite, siderite, or green rust, and limited reduction occurred with vivianite. However, reduction of Sb(V) to amorphous Sb(III) sulfide occurred with mackinawite. These results are consistent with abiotic reduction of Sb(V) by biogenic sulfide and reveal a substantial influence of Fe oxides on the speciation of Sb(III), which illustrates the tight coupling of Sb speciation with the biogeochemical cycling of S and Fe.
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Affiliation(s)
- Clayton R Johnson
- Biosciences Division, Argonne National Laboratory, Lemont, IL 60439-4843
| | | | - Maxim I Boyanov
- Biosciences Division, Argonne National Laboratory, Lemont, IL 60439-4843.,Bulgarian Academy of Sciences, Institute of Chemical Engineering, Sofia, 1113, Bulgaria
| | - Theodore M Flynn
- Biosciences Division, Argonne National Laboratory, Lemont, IL 60439-4843
| | - Jason C Koval
- Biosciences Division, Argonne National Laboratory, Lemont, IL 60439-4843
| | - Kenneth M Kemner
- Biosciences Division, Argonne National Laboratory, Lemont, IL 60439-4843
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Xu YN, Chen Y. Advances in heavy metal removal by sulfate-reducing bacteria. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2020; 81:1797-1827. [PMID: 32666937 DOI: 10.2166/wst.2020.227] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Industrial development has led to generation of large volumes of wastewater containing heavy metals, which need to be removed before the wastewater is released into the environment. Chemical and electrochemical methods are traditionally applied to treat this type of wastewater. These conventional methods have several shortcomings, such as secondary pollution and cost. Bioprocesses are gradually gaining popularity because of their high selectivities, low costs, and reduced environmental pollution. Removal of heavy metals by sulfate-reducing bacteria (SRB) is an economical and effective alternative to conventional methods. The limitations of and advances in SRB activity have not been comprehensively reviewed. In this paper, recent advances from laboratory studies in heavy metal removal by SRB were reported. Firstly, the mechanism of heavy metal removal by SRB is introduced. Then, the factors affecting microbial activity and metal removal efficiency are elucidated and discussed in detail. In addition, recent advances in selection of an electron donor, enhancement of SRB activity, and improvement of SRB tolerance to heavy metals are reviewed. Furthermore, key points for future studies of the SRB process are proposed.
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Affiliation(s)
- Ya-Nan Xu
- State Key Laboratory of Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Tongji University, 1239 Siping Road, Shanghai 200092, China E-mail:
| | - Yinguang Chen
- State Key Laboratory of Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Tongji University, 1239 Siping Road, Shanghai 200092, China E-mail: ; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China
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Reyes-Alvarado LC, Habouzit F, Rene ER, Santa-Catalina G, Escudie R, Bernet N, Lens PNL. Effect of ammonium, electron donor and sulphate transient feeding conditions on sulphidogenesis in sequencing batch bioreactors. BIORESOURCE TECHNOLOGY 2019; 276:288-299. [PMID: 30641327 DOI: 10.1016/j.biortech.2018.12.087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2018] [Revised: 12/22/2018] [Accepted: 12/24/2018] [Indexed: 06/09/2023]
Abstract
This work aimed to study the effect of transient feeding conditions on sulphidogenesis in 8 sequencing batch bioreactors (SBR). SBR L1 and H1, operated under steady-state conditions were used as the control reactors, while four SBR were tested under transient feeding conditions using moderate (L2 and L3, feast and famine: 2.5 and 0 g SO42-·L-1) and high (H2 and H3, feast and famine: 15 and 0 g SO42-·L-1) loads. The sulphate removal efficiency (RE) was ≥90% in SBR L2, L3 and H1. The NH4+ famine conditions resulted in a higher sulphate RE (≥40% H3) compared to feast conditions (≤20% H2). Besides, the sulphidogenic first-order kinetic constant was 4% larger and the use of electron donor was 16.6% more efficient under NH4+ famine conditions. Sulphidogenesis is robust to transient feeding conditions, but not when applying high loading rates (SBR H2 and H3).
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Affiliation(s)
- Luis C Reyes-Alvarado
- LBE, Univ Montpellier, INRA, 102 Avenue des Etangs, 11100 Narbonne, France; UNESCO-IHE Institute for Water Education, P.O. Box 3015, 2601 DA Delft, The Netherlands
| | - Frédéric Habouzit
- LBE, Univ Montpellier, INRA, 102 Avenue des Etangs, 11100 Narbonne, France
| | - Eldon R Rene
- UNESCO-IHE Institute for Water Education, P.O. Box 3015, 2601 DA Delft, The Netherlands.
| | | | - Renaud Escudie
- LBE, Univ Montpellier, INRA, 102 Avenue des Etangs, 11100 Narbonne, France
| | - Nicolas Bernet
- LBE, Univ Montpellier, INRA, 102 Avenue des Etangs, 11100 Narbonne, France
| | - Piet N L Lens
- UNESCO-IHE Institute for Water Education, P.O. Box 3015, 2601 DA Delft, The Netherlands
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Labrado AL, Brunner B, Bernasconi SM, Peckmann J. Formation of Large Native Sulfur Deposits Does Not Require Molecular Oxygen. Front Microbiol 2019; 10:24. [PMID: 30740094 PMCID: PMC6355691 DOI: 10.3389/fmicb.2019.00024] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Accepted: 01/09/2019] [Indexed: 01/05/2023] Open
Abstract
Large native (i.e., elemental) sulfur deposits can be part of caprock assemblages found on top of or in lateral position to salt diapirs and as stratabound mineralization in gypsum and anhydrite lithologies. Native sulfur is formed when hydrocarbons come in contact with sulfate minerals in presence of liquid water. The prevailing model for native sulfur formation in such settings is that sulfide produced by sulfate-reducing bacteria is oxidized to zero-valent sulfur in presence of molecular oxygen (O2). Although possible, such a scenario is problematic because: (1) exposure to oxygen would drastically decrease growth of microbial sulfate-reducing organisms, thereby slowing down sulfide production; (2) on geologic timescales, excess supply with oxygen would convert sulfide into sulfate rather than native sulfur; and (3) to produce large native sulfur deposits, enormous amounts of oxygenated water would need to be brought in close proximity to environments in which ample hydrocarbon supply sustains sulfate reduction. However, sulfur stable isotope data from native sulfur deposits emplaced at a stage after the formation of the host rocks indicate that the sulfur was formed in a setting with little solute exchange with the ambient environment and little supply of dissolved oxygen. We deduce that there must be a process for the formation of native sulfur in absence of an external oxidant for sulfide. We hypothesize that in systems with little solute exchange, sulfate-reducing organisms, possibly in cooperation with other anaerobic microbial partners, drive the formation of native sulfur deposits. In order to cope with sulfide stress, microbes may shift from harmful sulfide production to non-hazardous native sulfur production. We propose four possible mechanisms as a means to form native sulfur: (1) a modified sulfate reduction process that produces sulfur compounds with an intermediate oxidation state, (2) coupling of sulfide oxidation to methanogenesis that utilizes methylated compounds, acetate or carbon dioxide, (3) ammonium oxidation coupled to sulfate reduction, and (4) sulfur comproportionation of sulfate and sulfide. We show these reactions are thermodynamically favorable and especially useful in environments with multiple stressors, such as salt and dissolved sulfide, and provide evidence that microbial species functioning in such environments produce native sulfur. Integrating these insights, we argue that microbes may form large native sulfur deposits in absence of light and external oxidants such as O2, nitrate, and metal oxides. The existence of such a process would not only explain enigmatic occurrences of native sulfur in the geologic record, but also provide an explanation for cryptic sulfur and carbon cycling beneath the seabed.
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Affiliation(s)
- Amanda L. Labrado
- Department of Geological Sciences, The University of Texas at El Paso, El Paso, TX, United States
| | - Benjamin Brunner
- Department of Geological Sciences, The University of Texas at El Paso, El Paso, TX, United States
| | | | - Jörn Peckmann
- Centrum für Erdsystemforschung und Nachhaltigkeit, Universität Hamburg, Hamburg, Germany
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Liu ZH, Yin H, Lin Z, Dang Z. Sulfate-reducing bacteria in anaerobic bioprocesses: basic properties of pure isolates, molecular quantification, and controlling strategies. ACTA ACUST UNITED AC 2018. [DOI: 10.1080/21622515.2018.1437783] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Ze-hua Liu
- School of Environment and Energy, South China University of Technology, Guangzhou, People’s Republic of China
- Key Lab Pollution Control and Ecosystem Restoration in Industry Cluster, Ministry of Education, Guangzhou, People’s Republic of China
- Guangdong Environmental Protection Key Laboratory of Solid Waste Treatment and Recycling, Guangzhou, People’s Republic of China
- Guangdong Provincial Engineering and Technology Research Center for Environment Risk Prevention and Emergency Disposal, South China University of Technology, Guangzhou, People’s Republic of China
| | - Hua Yin
- School of Environment and Energy, South China University of Technology, Guangzhou, People’s Republic of China
| | - Zhang Lin
- School of Environment and Energy, South China University of Technology, Guangzhou, People’s Republic of China
| | - Zhi Dang
- School of Environment and Energy, South China University of Technology, Guangzhou, People’s Republic of China
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Removal of Arsenic Using Acid/Metal-Tolerant Sulfate Reducing Bacteria: A New Approach for Bioremediation of High-Arsenic Acid Mine Waters. WATER 2017. [DOI: 10.3390/w9120994] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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13
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Santos SC, Liebensteiner MG, van Gelder AH, Dimitrov MR, Almeida PF, Quintella CM, Stams AJM, Sánchez-Andrea I. Bacterial glycerol oxidation coupled to sulfate reduction at neutral and acidic pH. J GEN APPL MICROBIOL 2017; 64:1-8. [PMID: 29187682 DOI: 10.2323/jgam.2017.02.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Glycerol is a main co-product of biodiesel production. Crude glycerol may serve as a cheap and attractive substrate in biotechnological applications, e.g. for the production of valuable chemicals or as an electron donor for reduction processes. In this work, sulfate reduction with glycerol was studied at neutral and acidic pH using bioreactor sludge samples and Tinto River sediments as a source of inoculum, respectively. Communities of sulfate-reducing bacteria (SRB) and fermentative bacteria were co-enriched at both pH values. Molecular analyses revealed that sequences belonging to Desulfomicrobium genus were dominant in the cultures enriched at pH 7, while Desulfosporosinus sequences dominated in the culture enriched at pH 4. Glycerol conversion was coupled to sulfate reduction, but the substrate was incompletely oxidized to acetate in the neutrophilic enrichments, and acetate, lactate, and 1,3-propanediol under low pH conditions. Two strains belonging to Desulfomicrobium and Proteiniphilum genera were isolated from the neutrophilic enrichments, but the first isolate was not able to use glycerol, which suggests a syntrophic relationship between glycerol-degrading fermentative bacteria and SRB. A Clostridium strain able to grow with glycerol was isolated from the low pH enrichment. Our data indicate that glycerol promotes the growth of sulfate-reducing communities to form sulfide, which can be used to precipitate and recover heavy metals.
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Affiliation(s)
- Sidnei C Santos
- Laboratory of Microbiology, Wageningen University.,Studies Institute in Health and Biological, Federal University of South and Southeast of Pará
| | | | | | | | - Paulo F Almeida
- Laboratory of Biotechnology and Ecology of Microorganisms, Department of Bio-Interaction Sciences, Federal University of Bahia
| | - Cristina M Quintella
- Laboratory of Kinetic and Molecular Dynamic, Institute of Chemistry, Federal University of Bahia
| | - Alfons J M Stams
- Laboratory of Microbiology, Wageningen University.,Institute for Biotechnology and Bioengineering, Centre of Biological Engineering, University of Minho
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de Alencar FLS, Navoni JA, do Amaral VS. The use of bacterial bioremediation of metals in aquatic environments in the twenty-first century: a systematic review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:16545-16559. [PMID: 28540556 DOI: 10.1007/s11356-017-9129-8] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2017] [Accepted: 04/26/2017] [Indexed: 06/07/2023]
Abstract
Metal pollution is a current environmental issue as a consequence of unregulated anthropic activiy. A wide range of bioremediation strategies have been successfully implemented to recover contaminated areas. Among them, bacterial bioremediation stands out as a promising tool to confront these types of concerns. This study aimed to compare and discuss worldwide scientific evolution of bacterial potential for metal bioremediation in aquatic ecosystems. The study consisted of a systematic review, elaborated through a conceptual hypothesis model, during the period from 2000 to 2016, using PubMed, MEDLINE, and SciELO databases as data resources. The countries with the largest number of reports included in this work were India and the USA. Industrial wastewater discharge was the main subject associated to metal contamination/pollution and where bacterial bioremediations have mostly been applied. Biosorption is the main bioremediation mechanism described. Bacterial adaptation to metal presence was discussed in all the selected studies, and chromium was the most researched bioremedied substrate. Gram-negative Pseudomonas aeruginosas and the Gram-positive Bacillus subtilis bacteria were microorganisms with the greatest applicability for metal bioremediation. Most reports involved the study of genes and/or proteins related to metal metabolism and/or resistence, and Chromobacterium violaceum was the most studied. The present work shows the relevance of metal bacterial bioremediation through the high number of studies aimed at understanding the microbiological mechanisms involved. Moreover, the developed processes applied in removal and/or reducing the resulting environmental metal contaminant/pollutant load have become a current and increasingly biotechnological issue for recovering impacted areas.
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Affiliation(s)
| | - Julio Alejandro Navoni
- Development and Environment, Biosciences Center, Federal University of Rio Grande do Norte, Natal, RN, Brazil
| | - Viviane Souza do Amaral
- Development and Environment, Biosciences Center, Federal University of Rio Grande do Norte, Natal, RN, Brazil.
- Department of Cell Biology and Genetics, Federal University of Rio Grande do Norte (UFRN), Natal, RN, Brazil.
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15
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Seyedmonir E, Yilmaz F, Icgen B. Methicillin-Resistant Bacteria Inhabiting Surface Waters Monitored by mecA-Targeted Oligonucleotide Probes. BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2016; 97:261-271. [PMID: 27156085 DOI: 10.1007/s00128-016-1815-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2015] [Accepted: 04/27/2016] [Indexed: 06/05/2023]
Abstract
Part of a 20-60 kb staphylococcal chromosome cassette called mecA encodes low-affinity penicillin-binding protein PBP2a and causes methicillin resistance. Among all methicillin-resistant bacteria, methicillin-resistant Staphylococcus aureus is a major pathogen and main concern worldwide. Although the origin of the mecA is not very well-defined, mecA homologues are also ubiquitous in methicillin-resistant non-staphylococcal bacteria. Due to the dissemination of methicillin resistance through the transmission of mecA gene among staphylococcal and non-staphylococcal bacteria inhabiting surface waters, there is a need to monitor mecA gene in these waters for public health safety. Therefore, this study aimed at monitoring mecA harboring bacteria inhabiting surface waters by using fluorescently labelled mecA-targeted oligonucleotide probes. Under the hybridization conditions of 55 % formamide and 0.020 M NaCl at 46°C, the oligonucleotide probe used in the study showed high hybridization stringency to the mecA gene targeted. The strong linear relationships observed between the signal intensity and the target gene were used to assess the population dynamics of mecA harboring isolates over a 2-year-period. The results indicated that mecA-targeted oligonucleotide probes can be effectively used for in situ monitoring of methicillin resistant isolates inhabiting surface waters.
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Affiliation(s)
- Elnaz Seyedmonir
- Department of Biochemistry, Middle East Technical University, 06800, Ankara, Turkey
| | - Fadime Yilmaz
- Department of Environmental Engineering, Middle East Technical University, 06800, Ankara, Turkey
| | - Bulent Icgen
- Department of Biochemistry, Middle East Technical University, 06800, Ankara, Turkey.
- Department of Environmental Engineering, Middle East Technical University, 06800, Ankara, Turkey.
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16
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Zhao YG, Zheng Y, Tian W, Bai J, Feng G, Guo L, Gao M. Enrichment and immobilization of sulfide removal microbiota applied for environmental biological remediation of aquaculture area. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2016; 214:307-313. [PMID: 27105167 DOI: 10.1016/j.envpol.2016.03.028] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2015] [Revised: 03/10/2016] [Accepted: 03/10/2016] [Indexed: 06/05/2023]
Abstract
To remove sulfide in the deteriorating aquaculture sediment and water, sulfide-oxidizing microbiota was enriched from Jiaozhou Bay, China, by using sulfide-rich medium. Composition and structure of microbial communities in the enrichments were investigated by 16S rDNA molecular biotechniques. Results showed that microbial community structure continuously shifted and the abundance of sulfate reducing bacteria, i.e., Desulfobacterium, Desulfococcus and Desulfobacca apparently declined. Several halophile genera, Vibrio, Marinobacter, Pseudomonas, Prochlorococcus, Pediococcus and Thiobacillus predominated finally in the microbiota. The enriched microbiota was capable of removing a maximum of 1000 mg/L sulfide within 12 h with 10% inoculum at pH 7.0, 20-30 °C. After immobilized, the microbiota presented excellent resistance to impact and could completely remove 600 mg/L sulfide in 12 h. Moreover, the immobilized microbiota recovered well even recycled for five times. In conclusion, the immobilized sulfide-removing microbiota showed a quite promising application for biological restoring of sulfide-rich aquaculture environment.
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Affiliation(s)
- Yang-Guo Zhao
- Key Laboratory of Marine Environment and Ecology (Ocean University of China), Ministry of Education, Qingdao 266100, China; Shandong Provincial Key Laboratory of Marine Environment and Geological Engineering (MEGE), Ocean University of China, Qingdao 266100, China; College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China.
| | - Yu Zheng
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
| | - Weijun Tian
- Key Laboratory of Marine Environment and Ecology (Ocean University of China), Ministry of Education, Qingdao 266100, China; College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
| | - Jie Bai
- Key Laboratory of Marine Environment and Ecology (Ocean University of China), Ministry of Education, Qingdao 266100, China; College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
| | - Gong Feng
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
| | - Liang Guo
- Key Laboratory of Marine Environment and Ecology (Ocean University of China), Ministry of Education, Qingdao 266100, China; Shandong Provincial Key Laboratory of Marine Environment and Geological Engineering (MEGE), Ocean University of China, Qingdao 266100, China; College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
| | - Mengchun Gao
- Key Laboratory of Marine Environment and Ecology (Ocean University of China), Ministry of Education, Qingdao 266100, China; Shandong Provincial Key Laboratory of Marine Environment and Geological Engineering (MEGE), Ocean University of China, Qingdao 266100, China; College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
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17
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Icgen B, Yilmaz F. Design a cadA-targeted DNA probe for screening of potential bacterial cadmium biosorbents. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2016; 23:5743-5752. [PMID: 26585451 DOI: 10.1007/s11356-015-5810-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2015] [Accepted: 11/13/2015] [Indexed: 06/05/2023]
Abstract
Due to their metal removal ability, bacterial biosorbents can be effectively used for the treatment of wastewaters containing heavy metals. Searching for bacterial biosorbents for hazardous heavy metals like cadmium is a pivotal for remediation efforts. The gene cadA, that mediates resistance to cadmium over an ATP-dependent efflux mechanism, provides a good target for the selection of potential cadmium biosorbents. For this reason, in this study, a 36-mer-oligonucleotide DNA probe based on the entire 3.5-kb BglII-XbaI fragment of cadA operon from staphylococcal plasmid pI258 was prepared by using Vector NTI Express software. Under the hybridization conditions of 46 °C, 50 % formamide, and 0.028 M NaCl, the designed cadA probe appeared to be highly specific to the cadA-positive Staphylococcus warneri and Delftia acidovorans isolates tested. The results indicated that the newly designed cadA-targeted DNA probe has potential as a specific, sensitive, and quantitative tool in selecting and in situ screening of potential cadmium biosorbents.
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Affiliation(s)
- Bulent Icgen
- Department of Environmental Engineering, Middle East Technical University, 06800, Ankara, Turkey.
| | - Fadime Yilmaz
- Department of Environmental Engineering, Middle East Technical University, 06800, Ankara, Turkey
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18
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García-Solares SM, Ordaz A, Monroy-Hermosillo O, Jan-Roblero J, Guerrero-Barajas C. High sulfate reduction efficiency in a UASB using an alternative source of sulfidogenic sludge derived from hydrothermal vent sediments. Appl Biochem Biotechnol 2014; 174:2919-40. [PMID: 25234397 DOI: 10.1007/s12010-014-1237-z] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2014] [Accepted: 09/10/2014] [Indexed: 10/24/2022]
Abstract
Sulfidogenesis in reactors is mostly achieved through adaptation of predominantly methanogenic granular sludge to sulfidogenesis. In this work, an upflow anaerobic sludge blanket (UASB) reactor operated under sulfate-reducing conditions was inoculated with hydrothermal vent sediments to carry out sulfate reduction using volatile fatty acids (VFAs) as substrate and chemical oxygen demand (COD)/SO4 (-2) ratios between 0.49 and 0.64. After a short period of adaptation, a robust non-granular sludge was capable of achieving high sulfate reduction efficiencies while avoiding competence with methanogens and toxicity to the microorganisms due to high sulfide concentration. The highest sulfide concentration (2,552 mg/L) was obtained with acetate/butyrate, and sulfate reduction efficiencies were up to 98 %. A mixture of acetate/butyrate, which produced a higher yielding of HS(-), was preferred over acetate/propionate/butyrate since the consumption of COD was minimized during the process. Sludge was analyzed, and some of the microorganisms identified in the sludge belong to the genera Desulfobacterium, Marinobacter, and Clostridium. The tolerance of the sludge to sulfide may be attributed to the syntrophy among these microorganisms, some of which have been reported to tolerate high concentrations of sulfide. To the best of our knowledge, this is the first report on the analysis of the direct utilization of hydrothermal vent sediments as an alternate source of sludge for sulfate reduction under high sulfide concentrations.
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Affiliation(s)
- Selene Montserrat García-Solares
- Departamento de Bioprocesos, Laboratorio de Biotecnología Ambiental, Unidad Profesional Interdisciplinaria de Biotecnología (UPIBI), Instituto Politécnico Nacional, Mexico City, 07340, Mexico
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19
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Yilmaz F, Icgen B. Characterization of SDS-degrading Delftia acidovorans and in situ monitoring of its temporal succession in SDS-contaminated surface waters. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2014; 21:7413-7424. [PMID: 24584641 DOI: 10.1007/s11356-014-2653-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2013] [Accepted: 02/11/2014] [Indexed: 06/03/2023]
Abstract
Incomplete removal of sodium dodecyl sulfate (SDS) in wastewater treatment plants may result in SDS residues escaping and finding their way into receiving water bodies like rivers, lakes, and sea. Introduction of effective microorganisms into the aerobic treatment facilities can reduce unpleasant by-products and SDS residues. Selecting effective microorganisms for SDS treatment is a big challenge. Current study reports the isolation, identification, and in situ monitoring of an effective SDS-degrading isolate from detergent-polluted river waters. Screening was carried out by the conventional enrichment culture technique and the isolate was tentatively identified by using fatty acid methyl ester and 16S ribosomal RNA (rRNA) sequence analyses. Fatty acids produced by the isolate investigated were assumed as typical for the genus Comamonas. 16S rRNA sequence analysis also confirmed that the isolate had 95% homology with Delftia acidovorans known as Comamonas or Pseudomonas acidovorans previously. D. acidovorans exhibited optimum growth at SDS concentration of 1 g l(-1) but tolerated up to 10 g l(-1) SDS. 87% of 1.0 g l(-1) pure SDS was degraded after 11 days of incubation. The temporal succession of D. acidovorans in detergent-polluted river water was also monitored in situ by using Comamonas-specific fluorescein-labeled Cte probe. Being able to degrade SDS and populate in SDS-polluted surface waters, D. acidovorans isolates seem to be very helpful in elimination of SDS.
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Affiliation(s)
- Fadime Yilmaz
- Department of Environmental Engineering, Middle East Technical University, 06800, Ankara, Turkey
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20
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Barbosa LP, Costa PF, Bertolino SM, Silva JCC, Guerra-Sá R, Leão VA, Teixeira MC. Nickel, manganese and copper removal by a mixed consortium of sulfate reducing bacteria at a high COD/sulfate ratio. World J Microbiol Biotechnol 2014; 30:2171-80. [DOI: 10.1007/s11274-013-1592-x] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2013] [Accepted: 12/29/2013] [Indexed: 10/25/2022]
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21
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Sánchez-Andrea I, Sanz JL, Bijmans MFM, Stams AJM. Sulfate reduction at low pH to remediate acid mine drainage. JOURNAL OF HAZARDOUS MATERIALS 2014; 269:98-109. [PMID: 24444599 DOI: 10.1016/j.jhazmat.2013.12.032] [Citation(s) in RCA: 163] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2013] [Revised: 11/29/2013] [Accepted: 12/16/2013] [Indexed: 05/25/2023]
Abstract
Industrial activities and the natural oxidation of metallic sulfide-ores produce sulfate-rich waters with low pH and high heavy metals content, generally termed acid mine drainage (AMD). This is of great environmental concern as some heavy metals are highly toxic. Within a number of possibilities, biological treatment applying sulfate-reducing bacteria (SRB) is an attractive option to treat AMD and to recover metals. The process produces alkalinity, neutralizing the AMD simultaneously. The sulfide that is produced reacts with the metal in solution and precipitates them as metal sulfides. Here, important factors for biotechnological application of SRB such as the inocula, the pH of the process, the substrates and the reactor design are discussed. Microbial communities of sulfidogenic reactors treating AMD which comprise fermentative-, acetogenic- and SRB as well as methanogenic archaea are reviewed.
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Affiliation(s)
- Irene Sánchez-Andrea
- Departamento de Biología Molecular, Universidad Autónoma de Madrid, 28049 Madrid, Spain; Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, The Netherlands.
| | - Jose Luis Sanz
- Departamento de Biología Molecular, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Martijn F M Bijmans
- Wetsus, Centre of Sustainable Water Technology, P.O. Box 1113, 8900 CC Leeuwarden, The Netherlands
| | - Alfons J M Stams
- Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, The Netherlands; IBB - Institute for Biotechnology and Bioengineering, Centre of Biological Engineering, University of Minho, 4710-057 Braga, Portugal
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22
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Kim M, Han S, Gieskes J, Deheyn DD. Importance of organic matter lability for monomethylmercury production in sulfate-rich marine sediments. THE SCIENCE OF THE TOTAL ENVIRONMENT 2011; 409:778-784. [PMID: 21109287 DOI: 10.1016/j.scitotenv.2010.10.050] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2010] [Revised: 09/30/2010] [Accepted: 10/28/2010] [Indexed: 05/30/2023]
Abstract
Sediment cores were collected from two shallow sites in the Venice Lagoon, Italy, in order to study the lability of organic matter and the methylation rate of inorganic Hg(II). Measurements were made of concentrations of total Hg and monomethylmercury (MMHg), Hg(II) methylation rates, concentrations of total organic carbon and total nitrogen in the sediments, and dissolved sulfate, sulfide, and alkalinity in sedimentary pore waters. A positive linear relationship was detected between the specific Hg(II) methylation rate constant and the fraction of total Hg comprised of MMHg (%MMHg/Hg), indicating that short-term Hg(II) methylation rate reflects a long-term accumulation of MMHg in sediment. In addition, the %MMHg/Hg and specific Hg(II) methylation rate constant in sediment increased with decreasing ratios of total organic carbon to total nitrogen (C/N), whereas concentrations of dissolved sulfate, sulfide, and alkalinity in pore water remained constant. This result suggests that the Hg(II) methylation rate was affected by lability of organic matter. In particular, surface sediments, which contained large fractions of fresh algal organic material (C/N=5.8-7.8), showed higher Hg(II) methylation rates than did deeper sediments (C/N>10). Our results indicate that the C/N ratio can be used as a proxy for the lability of organic matter that influences Hg(II) methylation rate in sulfate-rich marine sediments.
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Affiliation(s)
- Miji Kim
- School of Environmental Science and Engineering, Gwangju Institute of Science and Technology, 261 Chemdan-gwagiro, Gwangju, Republic of Korea
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23
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Oyekola OO, van Hille RP, Harrison ST. Kinetic analysis of biological sulphate reduction using lactate as carbon source and electron donor: Effect of sulphate concentration. Chem Eng Sci 2010. [DOI: 10.1016/j.ces.2010.05.014] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Briones AM, Daugherty BJ, Angenent LT, Rausch K, Tumbleson M, Raskin L. Characterization of microbial trophic structures of two anaerobic bioreactors processing sulfate-rich waste streams. WATER RESEARCH 2009; 43:4451-4460. [PMID: 19643455 DOI: 10.1016/j.watres.2009.07.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2008] [Revised: 05/20/2009] [Accepted: 07/04/2009] [Indexed: 05/28/2023]
Abstract
A multi-compartment anaerobic bioreactor, designated the anaerobic migrating blanket reactor (AMBR), did not perform well in terms of chemical oxygen demand (COD) removal after an increase in sulfate load, compared to a conventional upflow anaerobic sludge blanket (UASB) reactor. The trophic structures of the bioreactors were characterized by analyzing the electron flows, formation and consumption of fermentation intermediates and terminal product (methane and hydrogen sulfide) formation. Critical performance parameters were linked to operational perturbations such as increase in sulfate load and changes in flow reversal schemes in the AMBR. Both of these manipulations affected the microbial communities, which were monitored by terminal restriction fragment length polymorphism (T-RFLP) analysis targeting the bacterial and archaeal domains. The less stable AMBR did not produce granular biomass, and in response to increased sulfate concentrations, experienced a reversal in the distribution of hydrogenotrophic methanogens that correlated with a shift in electron flow from butyrate to propionate. As this shift occurred, bacterial populations such as butyrate-producing clostridia, became predominant, thus leading to reactor imbalance. The stable UASB reactor developed and retained granules and maintained a relatively stable archaeal community. Sulfate perturbation led to the selection of a novel bacterial group (Thermotogaceae), which was most likely well adapted to the increasingly sulfidogenic conditions in the bioreactor.
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Affiliation(s)
- A M Briones
- Department of Civil and Environmental Engineering, University of Michigan, 1351 Beal Avenue, Ann Arbor, MI 48109-2125, USA
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25
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Gough HL, Dahl AL, Tribou E, Noble PA, Gaillard JF, Stahl DA. Elevated sulfate reduction in metal-contaminated freshwater lake sediments. ACTA ACUST UNITED AC 2008. [DOI: 10.1029/2008jg000738] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Heidi L. Gough
- Department of Civil and Environmental Engineering; Northwestern University; Evanston Illinois USA
- Department of Civil and Environmental Engineering; University of Washington; Seattle Washington USA
| | - Amy L. Dahl
- Department of Civil and Environmental Engineering; Northwestern University; Evanston Illinois USA
| | - Erik Tribou
- Department of Civil and Environmental Engineering; University of Washington; Seattle Washington USA
| | - Peter A. Noble
- Department of Civil and Environmental Engineering; University of Washington; Seattle Washington USA
| | - Jean-François Gaillard
- Department of Civil and Environmental Engineering; Northwestern University; Evanston Illinois USA
| | - David A. Stahl
- Department of Civil and Environmental Engineering; University of Washington; Seattle Washington USA
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26
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Caldwell SL, Laidler JR, Brewer EA, Eberly JO, Sandborgh SC, Colwell FS. Anaerobic oxidation of methane: mechanisms, bioenergetics, and the ecology of associated microorganisms. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2008; 42:6791-6799. [PMID: 18853791 DOI: 10.1021/es800120b] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Microbially mediated anaerobic oxidation of methane (AOM) moderates the input of methane, an important greenhouse gas, to the atmosphere by consuming methane produced in various marine, terrestrial, and subsurface environments. AOM coupled to sulfate reduction has been most extensively studied because of the abundance of sulfate in marine systems, but electron acceptors otherthan sulfate are more energetically favorable. Phylogenetic trees based on 16S rRNA gene clone libraries derived from microbial communities where AOM occurs show evidence of diverse, methanotrophic archaea (ANME) closely associated with sulfate-reducing bacteria, but these organisms have not yet been isolated as pure cultures. Several biochemical pathways for AOM have been proposed, including reverse methanogenesis, acetogenesis, and methylogenesis, and both culture-dependent and independent techniques have provided some clues to howthese communities function. Still, questions remain regarding the diversity, physiology, and metabolic restrictions of AOM-related organisms.
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Affiliation(s)
- Sara L Caldwell
- Department of Biology, Portland State University, Portland, Oregon 97201, USA
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