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Tanaka S, Adachi K. Label-free colorimetric analysis strategies based on adsorption-responsive surface-enhanced photochromic phenomena of tungsten(VI) oxide nanoparticles for amino acids. ANAL SCI 2024:10.1007/s44211-024-00607-6. [PMID: 38836971 DOI: 10.1007/s44211-024-00607-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Accepted: 05/18/2024] [Indexed: 06/06/2024]
Abstract
Herein, we present a colorimetric detection method based on the surface-enhanced photochromic phenomenon of tungsten (VI) oxide (WO3) nanocolloid particles for α-amino acid (AA) molecules, including L-aspartic acid (Asp), L-glutamic acid (Glu), L-histidine (His), L-isoleucine (Ile), L-leucine (Leu), L-lysine (Lys), L-phenylalanine (Phe), and L-valine (Val). The UV-induced photochromic phenomena in the AA/WO3 binary aqueous systems were investigated using UV-Vis absorption spectrometry. The adsorption properties of the AA molecules on the surface of the WO3 nanocolloid particles have been identified using a combination of adsorption isotherm analysis and attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy. A good linear correlation between the concentration of the AAs adsorbed on the surface of the WO3 nanocolloid particles and the initial photochromic coloration rate in the corresponding UV-irradiated WO3 colloidal aqueous solution was obtained with over three orders of magnitude, indicating that the surface-enhanced photochromic phenomenon of the WO3 nanocolloid particle can be used to detect the AA molecules. In addition, based on the results of the UV-Vis absorption, ATR-FTIR, and adsorption isotherm analyses, we have experimentally demonstrated that the AA/WO3 binary aqueous system with inner-sphere adsorbed Ile, Leu, Lys, or Val molecules on the surface of the WO3 nanocolloid particles exhibits a more significant surface-enhanced photochromic phenomenon than the system with outer-sphere adsorbed Asp, Glu, His, or Phe molecules. The strong inner-sphere adsorption of the AA molecules successfully improved the limit of detection. This study provides valuable insights into a "label-free" colorimetric assay system based on the surface-enhanced photochromic phenomenon of the WO3 nanocolloid probe.
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Affiliation(s)
- Shohei Tanaka
- Department of Chemistry, Graduate School of Sciences and Technology for Innovation, Yamaguchi University, Yamaguchi, 753-8512, Japan
| | - Kenta Adachi
- Department of Chemistry, Graduate School of Sciences and Technology for Innovation, Yamaguchi University, Yamaguchi, 753-8512, Japan.
- Opto-Energy Research Center, Yamaguchi University, Yamaguchi, 753-8511, Japan.
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2
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Ou J, Cui W, Zhao Y, Tang Y, Williams A, Wasalathanthri D, Xu J, Lee J, Borys MC, Khetan A. Use of spectroscopic process analytical technology for rapid quality evaluation during preparation of CHO cell culture media. Biotechnol Prog 2024:e3477. [PMID: 38699906 DOI: 10.1002/btpr.3477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Revised: 03/27/2024] [Accepted: 04/22/2024] [Indexed: 05/05/2024]
Abstract
Media preparation parameters contribute significantly to media quality, cell culture performance, productivity, and product quality. Establishing proper media preparation procedures is critical for ensuring a robust CHO cell culture process. Process analytical technology (PAT) enables unique ways to quantify assessments and improve media quality. Here, cell culture media were prepared under a wide range of temperatures (40-80°C) and pH (7.6-10.0). Media quality profiles were compared using three real-time PATs: Fourier-transform infrared (FTIR) spectroscopy, Raman spectroscopy, and excitation-emission matrix (EEM) spectroscopy. FTIR and Raman spectroscopies identified shifts in media quality under high preparation temperature (80°C) and at differing preparation pH which negatively impacted monoclonal antibody (mAb) production. In fed-batch processes for production of three different mAbs, viable cell density (VCD) and cell viability were mostly unaffected under all media preparation temperatures, while titer and cell specific productivity of mAb decreased when cultured in basal and feed media prepared at 80°C. High feed preparation pH alone was tolerated but cell growth and productivity profiles deviated from the control condition. Further, charge variants (main, acidic, basic species) and glycosylation (G0F, afucosylation, and high mannose) were examined. Statistically significant differences were observed for one or more of these quality attributes with any shifts in media preparation. In this study, we demonstrated strong associations between media preparation conditions and cell growth, productivity, and product quality. The rapid evaluation of media by PAT implementation enabled more comprehensive understanding of different parameters on media quality and consequential effects on CHO cell culture.
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Affiliation(s)
- Jianfa Ou
- Biologics Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Wanyue Cui
- Biologics Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Yuxiang Zhao
- Biologics Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Yawen Tang
- Biologics Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Alexander Williams
- Biologics Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Dhanuka Wasalathanthri
- Biologics Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Jianlin Xu
- Biologics Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Jongchan Lee
- Biologics Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Michael C Borys
- Biologics Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
| | - Anurag Khetan
- Biologics Development, Global Product Development and Supply, Bristol Myers Squibb, Devens, Massachusetts, USA
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3
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Akbarpour A, Rahimnejad M, Sadeghi-Aghbash M, Feizi F. Poly(vinyl alcohol) /Alginate nanofibrous mats containing Malva Sylvestris extract: Synthesis, characterization, in vitro and in vivo assessments for burn wound applications. Int J Pharm 2024; 654:123928. [PMID: 38401874 DOI: 10.1016/j.ijpharm.2024.123928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 01/27/2024] [Accepted: 02/19/2024] [Indexed: 02/26/2024]
Abstract
An important part of wound healing is providing effective wound care, coupled with preventing wound infection, which slows or disrupts healing. There are currently many herbal plants that have historical supernatural properties that show remarkable wound healing abilities. These herbal extracts have shown promising results when applied to electrospun nanofibrous mats platforms for wound healing. Accordingly, Malva Sylvestris extract (MS) was electrospun into polyvinyl alcohol/alginate nanofibrous mats (PVA/ALG). Field Emission Scanning Electron Microscopy (FESEM) demonstrated that the fiber diameter ranged from approximately 100-200 nm in nanofibrous mats, with a uniform appearance without beads. MS extract was detected in nanofibrous mats by Fourier Transform Infrared Spectroscopy (FTIR). A major benefit of incorporating MS extract into PVA/ALG nanofibrous mats is that their alterations have resulted in enhanced mechanical characteristics. The nanofibrous mats containing MS extracts showed significantly increased antibacterial efficacy against Gram-positive and Gram-negative bacteria. Based on the findings from in vivo experiments, the PVA/ALG/MS1 (M2) dressing demonstrated a wound closure rate of 93-94 % within 21 days of treatment in rats, indicating its significant potential for use as a wound dressing agent in the treatment of burn injuries. The combination of PVA, ALG, and MS1 in this nanofibrous mats exhibited beneficial properties, including biocompatibility, suitable mechanical strength, and the ability to promote cellular proliferation and angiogenesis, further validating its effectiveness as a wound healing dressing.
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Affiliation(s)
- Ali Akbarpour
- Biofuel and Renewable Energy Research Center, Chemical Engineering Department, Babol Noshirvani University of Technology, Babol, Iran.
| | - Mostafa Rahimnejad
- Biofuel and Renewable Energy Research Center, Chemical Engineering Department, Babol Noshirvani University of Technology, Babol, Iran.
| | - Mona Sadeghi-Aghbash
- Biofuel and Renewable Energy Research Center, Chemical Engineering Department, Babol Noshirvani University of Technology, Babol, Iran.
| | - Farideh Feizi
- Medicine School, Babol University of Medical Sciences, Babol, Iran.
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4
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Antalicz B, Sengupta S, Vilangottunjalil A, Versluis J, Bakker HJ. Orientational Behavior and Vibrational Response of Glycine at Aqueous Interfaces. J Phys Chem Lett 2024; 15:2075-2081. [PMID: 38358315 PMCID: PMC10895693 DOI: 10.1021/acs.jpclett.3c02930] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2024]
Abstract
Aqueous glycine plays many different roles in living systems, from being a building block for proteins to being a neurotransmitter. To better understand its fundamental behavior, we study glycine's orientational behavior near model aqueous interfaces, in the absence and presence of electric fields and biorelevant ions. To this purpose, we use a surface-specific technique called heterodyne-detected vibrational sum-frequency generation spectroscopy (HD-VSFG). Using HD-VSFG, we directly probe the symmetric and antisymmetric stretching vibrations of the carboxylate group of zwitterionic glycine. From their relative amplitudes, we infer the zwitterion's orientation near surfactant-covered interfaces and find that it is governed by both electrostatic and surfactant-specific interactions. By introducing additional ions, we observe that the net orientation is altered by the enhanced ionic strength, indicating a change in the balance of the electrostatic and surfactant-specific interactions.
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Affiliation(s)
- Balázs Antalicz
- Ultrafast Spectroscopy, AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands
| | - Sanghamitra Sengupta
- Ultrafast Spectroscopy, AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands
| | | | - Jan Versluis
- Ultrafast Spectroscopy, AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands
| | - Huib J Bakker
- Ultrafast Spectroscopy, AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands
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5
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Di Santo R, Niccolini B, Romanò S, Vaccaro M, Di Giacinto F, De Spirito M, Ciasca G. Advancements in Mid-Infrared spectroscopy of extracellular vesicles. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 305:123346. [PMID: 37774583 DOI: 10.1016/j.saa.2023.123346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Revised: 08/07/2023] [Accepted: 09/02/2023] [Indexed: 10/01/2023]
Abstract
Extracellular vesicles (EVs) are lipid vesicles secreted by all cells into the extracellular space and act as nanosized biological messengers among cells. They carry a specific molecular cargo, composed of lipids, proteins, nucleic acids, and carbohydrates, which reflects the state of their parent cells. Due to their remarkable structural and compositional heterogeneity, characterizing EVs, particularly from a biochemical perspective, presents complex challenges. In this context, mid-infrared (IR) spectroscopy is emerging as a valuable tool, providing researchers with a comprehensive and label-free spectral fingerprint of EVs in terms of their specific molecular content. This review aims to provide an up-to-date critical overview of the major advancements in mid-IR spectroscopy of extracellular vesicles, encompassing both fundamental and applied research achievements. We also systematically emphasize the new possibilities offered by the integration of emerging cutting-edge IR technologies, such as tip-enhanced and surface-enhanced spectroscopy approaches, along with the growing use of machine learning for data analysis and spectral interpretation. Additionally, to assist researchers in navigating this intricate subject, our manuscript includes a wide and detailed collection of the spectral peaks that have been assigned to EV molecular constituents up to now in the literature.
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Affiliation(s)
- Riccardo Di Santo
- Dipartimento di Neuroscienze, Sezione di Fisica, Università Cattolica del Sacro Cuore, 00168 Rome, Italy; Fondazione Policlinico Universitario "A. Gemelli" IRCCS, 00168 Rome, Italy.
| | - Benedetta Niccolini
- Dipartimento di Neuroscienze, Sezione di Fisica, Università Cattolica del Sacro Cuore, 00168 Rome, Italy
| | - Sabrina Romanò
- Dipartimento di Neuroscienze, Sezione di Fisica, Università Cattolica del Sacro Cuore, 00168 Rome, Italy
| | - Maria Vaccaro
- Fondazione Policlinico Universitario "A. Gemelli" IRCCS, 00168 Rome, Italy
| | - Flavio Di Giacinto
- Dipartimento di Neuroscienze, Sezione di Fisica, Università Cattolica del Sacro Cuore, 00168 Rome, Italy; Fondazione Policlinico Universitario "A. Gemelli" IRCCS, 00168 Rome, Italy
| | - Marco De Spirito
- Dipartimento di Neuroscienze, Sezione di Fisica, Università Cattolica del Sacro Cuore, 00168 Rome, Italy; Fondazione Policlinico Universitario "A. Gemelli" IRCCS, 00168 Rome, Italy
| | - Gabriele Ciasca
- Dipartimento di Neuroscienze, Sezione di Fisica, Università Cattolica del Sacro Cuore, 00168 Rome, Italy; Fondazione Policlinico Universitario "A. Gemelli" IRCCS, 00168 Rome, Italy
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Kollbek K, Jabłoński P, Perzanowski M, Święch D, Sikora M, Słowik G, Marzec M, Gajewska M, Paluszkiewicz C, Przybylski M. Inert gas condensation made bimetallic FeCu nanoparticles – plasmonic response and magnetic ordering. JOURNAL OF MATERIALS CHEMISTRY C 2024; 12:2593-2605. [DOI: 10.1039/d3tc02630b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2024]
Abstract
Bimetallic FeCu nanoparticles of narrow size distribution produced by inert gas condensation (IGC) technique exhibit functional plasmonic and magnetic properties and can be considered as a promising system for the development of biosensors.
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Affiliation(s)
- Kamila Kollbek
- Academic Centre for Materials and Nanotechnology, AGH University of Krakow, Mickiewicza 30, 30-059 Krakow, Poland
| | - Piotr Jabłoński
- Faculty of Materials Science and Ceramics, AGH University of Krakow, Mickiewicza 30, 30-059 Krakow, Poland
| | - Marcin Perzanowski
- Institute of Nuclear Physics, Polish Academy of Sciences, Radzikowskiego 152, 31-342 Krakow, Poland
| | - Dominika Święch
- Faculty of Foundry Engineering, AGH University of Krakow, Mickiewicza 30, 30-059 Krakow, Poland
| | - Marcin Sikora
- Academic Centre for Materials and Nanotechnology, AGH University of Krakow, Mickiewicza 30, 30-059 Krakow, Poland
| | - Grzegorz Słowik
- Department of Chemical Technology, Faculty of Chemistry, Maria Curie-Skłodowska University, 3. Maria-Curie-Skłodowska Sq., 20-031, Lublin, Poland
| | - Mateusz Marzec
- Academic Centre for Materials and Nanotechnology, AGH University of Krakow, Mickiewicza 30, 30-059 Krakow, Poland
| | - Marta Gajewska
- Academic Centre for Materials and Nanotechnology, AGH University of Krakow, Mickiewicza 30, 30-059 Krakow, Poland
| | - Czesława Paluszkiewicz
- Institute of Nuclear Physics, Polish Academy of Sciences, Radzikowskiego 152, 31-342 Krakow, Poland
| | - Marek Przybylski
- Academic Centre for Materials and Nanotechnology, AGH University of Krakow, Mickiewicza 30, 30-059 Krakow, Poland
- Faculty of Physics and Applied Computer Science, AGH University of Krakow, Mickiewicza 30, 30-059 Krakow, Poland
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7
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Suleiman Alsalhi M, Royall PG, Al-Obaidi H, Alsalhi A, Cilibrizzi A, Chan KLA. Non-salt based co-amorphous formulation produced by freeze-drying. Int J Pharm 2023; 645:123404. [PMID: 37714312 DOI: 10.1016/j.ijpharm.2023.123404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Revised: 09/08/2023] [Accepted: 09/09/2023] [Indexed: 09/17/2023]
Abstract
Amino acids-based co-amorphous system (CAM) has shown to be a promising approach to overcome the dissolution challenge of biopharmaceutics classification system class II drugs. To date, most CAM formulations are based on salt formation at a 1:1 M ratio and are prepared by mechanical activation. However, its use in medicinal products is still limited due to the lack of in-depth understanding of non-ionic based molecular interactions. There are also limited studies on the effect of drug-to-co-former ratio, the development of more scalable, less aggressive, manufacturing processes such as freeze drying and its dissolution benefits. This work aims to investigate the effect of the ratio of tryptophan (a model non-ionic amino acid) to indomethacin (a model drug) on a non-salt-based CAM prepared via freeze-drying with the tert-butyl alcohol-water cosolvent system. The CAM material was systemically characterized at various stages of the freeze-drying process using DSC, UV-Vis, FT-IR, NMR, TGA and XRPD. Dissolution performance and physical stability upon storage were also investigated. Freeze-drying using the cosolvent system has been successfully shown to produce CAMs. The molecular interactions involving H-bonding, H/π and π-π between compounds have been confirmed by FT-IR and NMR. The drug release rate for formulations with a 1.5:1 drug: amino acid molar ratio (or 1:0.42 wt ratio) or below is found to be significantly improved compared to the pure crystalline drug. Furthermore, formulation with a 2.3:1 drug:amino acid molar ratio (or 1:0.25 wt ratio) or below have shown to be physically stable for at least 9 months when stored at dry condition (5% relative humidity, 25 °C) compared to the pure amorphous indomethacin. We have demonstrated the potential of freeze-drying using tert-butyl alcohol-water cosolvent system to produce an optimal non-salt-based class II drug-amino acid CAM.
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Affiliation(s)
- Mohammed Suleiman Alsalhi
- Institute of Pharmaceutical Science, King's College London, SE1 9NH, UK; College of pharmacy, King Saud University, Riyadh, Saudi Arabia.
| | - Paul G Royall
- Institute of Pharmaceutical Science, King's College London, SE1 9NH, UK
| | - Hisham Al-Obaidi
- School of Chemistry, Food and Pharmacy (SCFP), University of Reading, Whiteknights, Reading RG6 6AP, UK
| | - Alyaa Alsalhi
- College of pharmacy, King Saud University, Riyadh, Saudi Arabia
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Porwal VK, Carof A, Ingrosso F. Hydration effects on the vibrational properties of carboxylates: From continuum models to QM/MM simulations. J Comput Chem 2023. [PMID: 37300426 DOI: 10.1002/jcc.27171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Revised: 05/15/2023] [Accepted: 05/21/2023] [Indexed: 06/12/2023]
Abstract
The presence of carboxyl groups in a molecule delivers an affinity to metal cations and a sensitivity to the chemical environment, especially for an environment that can give rise to intermolecular hydrogen bonds. Carboxylate groups can also induce intramolecular interactions, such as the formation of hydrogen bonds with donor groups, leading to an impact on the conformational space of biomolecules. In the latter case, the protonation state of the amino groups plays an important role. In order to provide an accurate description of the modifications induced in a carboxylated molecule by the formation of hydrogen bonds, one needs a compromise between a quantum chemical description of the system and the necessity to take into account explicit solvent molecules. In this work, we propose a bottom-up approach to study the conformational space and the carboxylate stretching band of (bio)organic anions. Starting from the anions in a continuum solvent, we then move to calculations using a microsolvation approach including one explicit water molecule per polar group, immersed in a continuum. Finally, we run QM/MM molecular dynamics simulations to analyze the solvation properties and to explore the anions conformational space. The results thus obtained are in good agreement with the description given by the microsolvation approach and they bring a more detailed description of the solvation shell and of the intermolecular hydrogen bonds.
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Affiliation(s)
- Vishal Kumar Porwal
- Université de Lorraine and CNRS, Laboratoire de Physique et Chimie Théoriques UMR 7019, Nancy, France
| | - Antoine Carof
- Université de Lorraine and CNRS, Laboratoire de Physique et Chimie Théoriques UMR 7019, Nancy, France
| | - Francesca Ingrosso
- Université de Lorraine and CNRS, Laboratoire de Physique et Chimie Théoriques UMR 7019, Nancy, France
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Yang Y, Liu J, Zhu M, Dou S, Ding L. Adsorption of glycine at the anatase TiO 2/water interface: Effects of Ca 2+ ions. J Environ Sci (China) 2023; 128:26-34. [PMID: 36801039 DOI: 10.1016/j.jes.2022.08.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Revised: 08/05/2022] [Accepted: 08/10/2022] [Indexed: 06/18/2023]
Abstract
Adsorption reactions of amino acids (AAs) on TiO2 nanoparticles (NPs) play an important role in the available nutrients in soils and sediments. The pH effects on glycine adsorption have been studied, but little is known about its coadsorption with Ca2+ at the molecular level. Combined attenuated total reflectance Fourier transform infrared (ATR-FTIR) flow-cell measurements and density functional theory (DFT) calculations were used to determine the surface complex and corresponding dynamic adsorption/desorption processes. The structures of glycine adsorbed onto TiO2 were closely associated with its dissolved species in the solution phase. The presence of Ca2+ exerted different influences on glycine adsorption within pH 4-11, thus affecting its migration rate in soils and sediments. The mononuclear bidentate complex at pH 4-7, involving the COO- moiety of zwitterionic glycine, remained unchanged in the absence and presence of Ca2+. At pH 11, the mononuclear bidentate complex with deprotonated NH2 can be removed from the TiO2 surface upon coadsorption with Ca2+. The bonding strength of glycine on TiO2 was much weaker than that of the Ca-bridged ternary surface complexation. Glycine adsorption was inhibited at pH 4 but was enhanced at pH 7 and 11.
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Affiliation(s)
- Yanli Yang
- School of Public Health, Cheeloo College of Medicine, Shandong University, China.
| | - Jiaqi Liu
- School of Public Health, Cheeloo College of Medicine, Shandong University, China
| | - Mengyao Zhu
- School of Public Health, Cheeloo College of Medicine, Shandong University, China
| | - Shengping Dou
- School of Public Health, Cheeloo College of Medicine, Shandong University, China
| | - Lei Ding
- Environment Research Institute, Shandong University, Qingdao 266237, China
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Alkhuder K. Fourier-transform infrared spectroscopy: a universal optical sensing technique with auspicious application prospects in the diagnosis and management of autoimmune diseases. Photodiagnosis Photodyn Ther 2023; 42:103606. [PMID: 37187270 DOI: 10.1016/j.pdpdt.2023.103606] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 04/27/2023] [Accepted: 05/09/2023] [Indexed: 05/17/2023]
Abstract
Autoimmune diseases (AIDs) are poorly understood clinical syndromes due to breakdown of immune tolerance towards specific types of self-antigens. They are generally associated with an inflammatory response mediated by lymphocytes T, autoantibodies or both. Ultimately, chronic inflammation culminates in tissue damages and clinical manifestations. AIDs affect 5% of the world population, and they represent the main cause of fatality in young to middle-aged females. In addition, the chronic nature of AIDs has a devastating impact on the patient's quality of life. It also places a heavy burden on the health care system. Establishing a rapid and accurate diagnosis is considered vital for an ideal medical management of these autoimmune disorders. However, for some AIDs, this task might be challenging. Vibrational spectroscopies, and more particularly Fourier-transform infrared (FTIR) spectroscopy, have emerged as universal analytical techniques with promising applications in the diagnosis of various types of malignancies and metabolic and infectious diseases. The high sensitivity of these optical sensing techniques and their minimal requirements for test reagents qualify them to be ideal analytical techniques. The aim of the current review is to explore the potential applications of FTIR spectroscopy in the diagnosis and management of most common AIDs. It also aims to demonstrate how this technique has contributed to deciphering the biochemical and physiopathological aspects of these chronic inflammatory diseases. The advantages that can be offered by this optical sensing technique over the traditional and gold standard methods used in the diagnosis of these autoimmune disorders have also been extensively discussed.
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11
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Ferrihydrite synthesis in the presence of amino acids and artificial seawater. Amino Acids 2023:10.1007/s00726-023-03253-w. [PMID: 36877410 DOI: 10.1007/s00726-023-03253-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 02/17/2023] [Indexed: 03/07/2023]
Abstract
Ferrihydrite is widespread in clays, soils, and living organisms and was found on Mars. This iron-mineral could be found on the prebiotic Earth, which also contained simple monomeric amino acids. For prebiotic chemistry, it is important to understand how amino acids have an effect on the process of iron oxide formations. There are three important results in this work: (a) preconcentration of cysteine and aspartic acid, (b) formation of cystine and probably the cysteine peptide occurred during ferrihydrite syntheses, and (c) amino acids have an effect on iron oxide synthesis. For samples containing aspartic acid and cysteine, their presence on the surface or mineral structure can be confirmed by FT-IR spectra. Surface charge analysis showed a relatively high decrease for samples synthesized with cysteine. Scanning electron microscopy did not show marked morphological differences among the samples, except for the seawater sample containing cysteine, which had a lamina-shaped morphology surrounded by circular iron particles, indicating the possible formation of a cysteine structure involving iron oxide particles. The thermogravimetric analysis of the samples indicates that the presence of salts and amino acids in the synthesis of ferrihydrite has an effect on the thermal behavior of the iron oxide/amino acids and modifying the water-loss temperature. The heating of the cysteine samples, synthesized in distilled water and artificial seawater, showed several peaks of degradation of cysteine. In addition, heating of the aspartic acid samples produced the polymerization of this amino acid and peaks of degradation of it. FTIR spectra and XRD patterns did not indicate the precipitation of methionine, 2-aminoisobutyric acid, lysine, or glycine with the iron oxide formations. However, the heating of the glycine, methionine and lysine samples, synthesized in artificial seawater, showed peaks that could be attributed to the degradation of them. Then this could be an indication that these amino acids precipitate with the minerals during the syntheses. Also, the dissolution of these amino acids in artificial seawater prevents the formation of ferrihydrite.
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12
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Synthesis, spectroscopic, and molecular interaction study of lead(II) complex of DL-alanine using experimental techniques and quantum chemical calculations. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2023.135208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
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13
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Viorica R, Pawel P, Płociński T, Gloc M, Dobrucka R, Kurzydłowski KJ, Boguslaw B. Consideration of a new approach to clarify the mechanism formation of AgNPs, AgNCl and AgNPs@AgNCl synthesized by biological method. NANOSCALE RESEARCH LETTERS 2023; 18:2. [PMID: 36723754 DOI: 10.1186/s11671-023-03777-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2022] [Accepted: 01/24/2023] [Indexed: 05/24/2023]
Abstract
The biological methods are considered as environmental-eco-friendly methods for the silver nanocomposites mediation and are widely used in this context. However, the biological methods go along with the relevant limitations, for instance simultaneous synthesis of silver chlorides (AgNCl) type during the AgNPs mediation process. Therefore, the present research is coming to summarize several aspects in this context. Firstly, to present the possible promotion of the sustainable development using bioactive source (e.g. milk) as a source of two different available and new lactobacillus strains (Lactobacillus curvatus and Lactobacillus fermentum). Secondly, to show the ability of the respective isolates to be involved in mediation of various biosilver nanocomposites ((Bio)NCs) synthesis. Moreover, at this stage, for the first time, two (Bio)NCs mediation methods, called "direct method" and "modified method", have been developed, thus three types (AgNPs, AgNCl and AgNP@AgNCl) of nanocomposites mediated by two different Lactobacillus isolates take place. The interdisciplinary approach included using several spectroscopic, microscopic, spectrometric and thermogravimetric methods demonstrated that all six synthesized nanoparticles (three AgNPs, AgNCl and AgNP@AgNCl types from each source) consist of complex structure including both metallic silver core as well as organic surface deposits. The spectrometric technique allowed to identification of the organics branching surface, naturally secreted by the used Lactobacillus isolates during the inoculation step, suggesting the presence of amino-acids sequences which are direct connected with the reduction of silver ion to metal silver, and subsequently with the formation of coated (Bio)NCs and nucleation process. Moreover, based on the obtained results, the mediation mechanism of each (Bio)NCs has been proposed, suggesting that the formation of AgNPs, AgNCl and AgNP@AgNCl types occurs in different manners with faster synthesis firstly of AgNCl, then of the AgNPs type. No differences between the (Bio)NCs synthesized by two different Lactobacillus isolates have been noticed indicating no discrepancies between metabolites secreted by the respective sources.
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Affiliation(s)
- Railean Viorica
- Department of Infectious, Invasive Diseases and Veterinary Administration, Institute of Veterinary Medicine, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100, Toruń, Poland.
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Torun, Wileńska 4, 87-100, Toruń, Poland.
| | - Pomastowski Pawel
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Torun, Wileńska 4, 87-100, Toruń, Poland
| | - Tomasz Płociński
- Faculty of Materials Science and Engineering Warsaw, University of Technology, Ul. Wołoska 141, 02-507, Warsaw, Poland
| | - Michał Gloc
- Faculty of Materials Science and Engineering Warsaw, University of Technology, Ul. Wołoska 141, 02-507, Warsaw, Poland
| | - Renata Dobrucka
- Faculty of Materials Science and Engineering Warsaw, University of Technology, Ul. Wołoska 141, 02-507, Warsaw, Poland
- Department of Non-Food Products Quality and Packaging Development, Institute of Quality Science, Poznań University of Economics and Business, Al. Niepodległości 10, 61-875, Poznan, Poland
| | - Krzysztof Jan Kurzydłowski
- Faculty of Mechanical Engineering, Bialystok University of Technology, Ul. Wiejska 45C, 15-351, Białystok, Poland
| | - Buszewski Boguslaw
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Torun, Wileńska 4, 87-100, Toruń, Poland
- Department of Environmental Chemistry and Bioanalytics, Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100, Toruń, Poland
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14
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Aslih N, Dekel BZ, Malonek D, Michaeli M, Polotov D, Shalom-Paz E. Non-invasive evaluation of embryos using mid-infrared attenuated total reflection spectrometry of incubation medium: a preliminary study. Reprod Biomed Online 2022; 46:793-801. [PMID: 36925364 DOI: 10.1016/j.rbmo.2022.12.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Revised: 11/27/2022] [Accepted: 12/13/2022] [Indexed: 12/24/2022]
Abstract
RESEARCH QUESTION Can mid-infrared attenuated total reflection (MIR ATR) spectroscopy combined with machine learning methods be used as an additional tool to predict embryo quality and IVF treatment outcomes? DESIGN Spent culture media was collected and analysed. MIR ATR absorbance spectra were measured using an ALPHA II spectrometer equipped with an attenuated total reflection (ATR) spectrometry accessory. Patient and treatment data and results were collected and analysed in combination with machine learning techniques to identify possible correlations. The main outcome measures were to define the characteristics of absorbance spectra of spent culture media and to distinguish the difference in absorbance between top- and low-quality embryos, day 3 and day 5 embryos and implanting embryos versus non-implanting embryos. RESULTS Spent culture media of 227 embryos was collected and analysed. Absorbance peaks in the culture media were different between day 3 and day 5 embryos. Moreover, significant differences in P-values, spanning from 0.014 to 0.044 in absorbance peaks for day 3 embryos and 0.024 up to 0.04 for day 5 embryos, were seen between implanting and non-implanting embryos. Machine learning techniques offered a pregnancy prediction value of 84.6% for day 3 embryos. CONCLUSIONS MIR ATR may offer an additional parameter for better selection of embryos based on the spectrometric absorbance and secretions of metabolites in the culture media.
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Affiliation(s)
- Nardin Aslih
- IVF Unit, Hillel Yaffe Medical Center, Hadera, Israel.
| | - Ben Zion Dekel
- Department of Electrical and Computer Engineering, Ruppin Academic Center, Emek Hefer, Israel
| | - Dov Malonek
- Department of Electrical and Computer Engineering, Ruppin Academic Center, Emek Hefer, Israel
| | | | - Diana Polotov
- IVF Unit, Hillel Yaffe Medical Center, Hadera, Israel
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15
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Shim JH, Gwak S, Ahn BK, Han H, Hong Y, Shin OS. Investigation of d-Amino Acid-Based Surfactants and Nanocomposites with Gold and Silica Nanoparticles as against Multidrug-Resistant Bacteria Agents. ACS OMEGA 2022; 7:46146-46155. [PMID: 36570237 PMCID: PMC9773340 DOI: 10.1021/acsomega.2c04220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Accepted: 11/23/2022] [Indexed: 06/17/2023]
Abstract
d-amino acid-based surfactants (d-AASs) were synthesized and their antimicrobial activity was evaluated. N-α-lauroyl-d-arginine ethyl ester hydrochloride (d-LAE), d-proline dodecyl ester (d-PD), and d-alanine dodecyl ester (d-AD) were found to have antibacterial activity against both Gram-positive and -negative bacteria, but less efficacy against Gram-negative bacteria. For these reasons, combining antimicrobial agents with nanoparticles is a promising technique for improving their antibacterial properties to eliminate drug-resistant pathogens. d-LAE coated on gold (AuNP) and silica (SiNP) nanoparticles has more efficient antibacterial activity than that of d-LAE alone. However, unlike d-LAE, d-PD has enhanced antibacterial activity upon being coated on AuNP. The antibacterial d-AASs and their nanocomposites with nanoparticles were synthesized in an environmentally friendly manner and are expected to be valuable new antimicrobial agents against multidrug-resistant (MDR) pathogens.
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Affiliation(s)
- Jae Ho Shim
- Department
of Anatomy, Korea University College of
Medicine, Seoul 02842, Korea
| | - Sungduk Gwak
- Department
of Chemistry, Korea University, Seoul 02841, Korea
| | - Byung Kook Ahn
- Department
of Anatomy, Korea University College of
Medicine, Seoul 02842, Korea
| | - Hogyu Han
- Department
of Chemistry, Korea University, Seoul 02841, Korea
| | - Yeonsun Hong
- Department
of Microbiology and Immunology, David H. Smith Center for Vaccine
Biology and Immunology, University of Rochester, Rochester, New York 14642, United States
| | - Ok Sarah Shin
- BK21
Graduate Program, Department of Biomedical Sciences, College of Medicine, Korea University Guro Hospital, Seoul 08308, Korea
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16
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Malykhina NV, Olshannikova SS, Holyavka MG, Sorokin AV, Lavlinskaya MS, Artyukhov VG, Faizullin DA, Zuev YF. Preparation of Ficin Complexes with Carboxymethylchitosan and N-(2-Hydroxy)Propyl-3-Trimethylammoniumchitosan and Studies of Their Structural Features. RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY 2022. [DOI: 10.1134/s1068162022060176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/05/2023]
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17
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Rodzik A, Railean V, Pomastowski P, Žuvela P, Wong MW, Buszewski B. The influence of zinc ions concentration on β-lactoglobulin structure – physicochemical properties of Zn–β-lactoglobulin complexes. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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18
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Cherepanov I, Sidorov A, Terentiev A, Menshikova D, Beduleva L, Menshikov I. Fourier-transform infrared spectroscopy of human IgG Fc fragments, which are a promising drug for the treatment of autoimmune diseases. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 278:121299. [PMID: 35504102 DOI: 10.1016/j.saa.2022.121299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Revised: 04/18/2022] [Accepted: 04/22/2022] [Indexed: 06/14/2023]
Abstract
IgG Fc fragments that expose regulatory rheumatoid factor epitopes (regRF epitopes) have emerged as a promising immunosuppressive drug. Immunization of rats with such Fc fragments reduced symptoms of experimental autoimmune diseases. The immunosuppressive effect of Fc fragments is based on stimulating the production of regRF, which kills activated CD4 T lymphocytes. The formation of regRF epitopes on Fc fragments was previously shown to be associated with a reduction in disulfide bonds in the fragments' hinge region. However, the structure of Fc fragments that bear regRF epitopes remained largely unclear. Infrared spectra were compared for lyophilized Fc fragments displaying regRF epitopes and Fc fragments without such epitopes. FTIR spectroscopy found no differences in the amide I, amide II, and amide III bands, indicating that there are no distinctive features in the secondary structure of Fc fragments bearing regRF epitopes. The distinctive feature of Fc fragments bearing regRF epitopes, irrespective of whether the free SH groups in the hinge were preserved or lost after lyophilization, is the presence of a band or a fine structure in the region containing the bending vibrations of the SH groups. Furthermore, the Fc fragments with regRF epitopes differ from those without in that they have a band in the absorption region of aromatic amino acid rings. Taken together, these facts suggest that the appearance of regRF epitopes results from changes in the tertiary structure of the hinge and the domains that occur when the hinge is reduced, and they also indicate that these conformational changes are resistant to subsequent changes in the state of cysteine residues in the hinge. Bands in the regions of aromatic amino acids and the bending vibrations of SH groups are markers of the presence of regRF epitopes on IgG Fc fragments. FTIR spectroscopy can be used to detect these epitopes.
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Affiliation(s)
- Igor Cherepanov
- Laboratory of Molecular and Cell Immunology, Department of Immunology and Cell Biology, Udmurt State University, 1 Universitetskaya St., Izhevsk 426034, Russian Federation; Department of Fundamental and Applied Chemistry, Udmurt State University, Russian Federation.
| | - Alexandr Sidorov
- Laboratory of Molecular and Cell Immunology, Department of Immunology and Cell Biology, Udmurt State University, 1 Universitetskaya St., Izhevsk 426034, Russian Federation; Laboratory of Biocompatible Materials, Udmurt Federal Research Center UB RAS, Russian Federation
| | - Alexey Terentiev
- Laboratory of Molecular and Cell Immunology, Department of Immunology and Cell Biology, Udmurt State University, 1 Universitetskaya St., Izhevsk 426034, Russian Federation; Laboratory of Biocompatible Materials, Udmurt Federal Research Center UB RAS, Russian Federation
| | - Daria Menshikova
- Peoples' Friendship University of Russia (RUDN University), Moscow, Russian Federation
| | - Liubov Beduleva
- Laboratory of Molecular and Cell Immunology, Department of Immunology and Cell Biology, Udmurt State University, 1 Universitetskaya St., Izhevsk 426034, Russian Federation; Laboratory of Biocompatible Materials, Udmurt Federal Research Center UB RAS, Russian Federation
| | - Igor Menshikov
- Laboratory of Molecular and Cell Immunology, Department of Immunology and Cell Biology, Udmurt State University, 1 Universitetskaya St., Izhevsk 426034, Russian Federation; Laboratory of Biocompatible Materials, Udmurt Federal Research Center UB RAS, Russian Federation
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19
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Rodzik A, Król-Górniak A, Railean V, Sugajski M, Gołębiowski A, Horne DS, Michalke B, Sprynskyy M, Pomastowski P, Buszewski B. Study on zinc ions binding to the individual casein fractions: α-, β- and κ-casein. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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20
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Rehman AN, Bavoh CB, Lal B, Sabil KM, Sangwai JS. Insights on CO 2 Hydrate Formation and Dissociation Kinetics of Amino Acids in a Brine Solution. Ind Eng Chem Res 2022. [DOI: 10.1021/acs.iecr.2c02178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Amirun Nissa Rehman
- Chemical Engineering Department, Universiti Teknologi PETRONAS, Bandar Seri Iskandar 32610, Perak Darul Ridzuan, Malaysia
- Research Centre for CO2 Capture (RCCO2C), Universiti Teknologi PETRONAS, Bandar Seri Iskandar 32610, Perak, Malaysia
| | - Cornelius B. Bavoh
- Chemical Engineering Department, Universiti Teknologi PETRONAS, Bandar Seri Iskandar 32610, Perak Darul Ridzuan, Malaysia
- Research Centre for CO2 Capture (RCCO2C), Universiti Teknologi PETRONAS, Bandar Seri Iskandar 32610, Perak, Malaysia
| | - Bhajan Lal
- Chemical Engineering Department, Universiti Teknologi PETRONAS, Bandar Seri Iskandar 32610, Perak Darul Ridzuan, Malaysia
- Research Centre for CO2 Capture (RCCO2C), Universiti Teknologi PETRONAS, Bandar Seri Iskandar 32610, Perak, Malaysia
| | - Khalik M. Sabil
- PETRONAS Research Sdn Bhd, Kawasan Institusi Bangi, Lot 3288 3289 Off Jalan Ayer Itam, Kajang 43000, Selangor, Malaysia
| | - Jitendra S. Sangwai
- Petroleum Engineering Program, Department of Ocean Engineering, Indian Institute of Technology Madras, Chennai 600036, Tamil Nadu, India
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21
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Paikra SK, Panda J, Sahoo G, Mishra M. Characterization of exopolysaccharide derived from Enterobacter ludwigii and its possible role as an emulsifier. 3 Biotech 2022; 12:212. [PMID: 35959165 PMCID: PMC9357601 DOI: 10.1007/s13205-022-03279-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Accepted: 07/26/2022] [Indexed: 12/01/2022] Open
Abstract
Enterobacter ludwigii is an oral growing bacteria responsible for teeth blackening. It can form biofilm. The exopolysaccharide (EPS) cluster associated with biofilm formation was isolated using ethanol precipitation and the formaldehyde-sodium hydroxide method. The chemical characterization of EPS was done using UV spectroscopy, Fourier transforms infrared spectroscopy, and gas chromatography-mass spectrometry. Energy-dispersive X-ray spectroscopy (EDS) analysis of EPS has revealed the presence of carbon > boron > nitrogen > phosphorous > calcium > sulfur > iron > potassium > magnesium. The carbon content was quite high (72.72-77.63%) in the EPS due to polysaccharide composition. The study showed the presence of different monosaccharides glucose (16.91%), galactose (4.25%), mannose (4.04%), and xylose (8.06%) as the major components of EPS. It appears such as thin filaments with three-dimensional structure, compact, irregular lumps and stacked flakes of polysaccharides. The EPS was also examined using different 1D, 2D Nuclear Magnetic Resonance (NMR) spectroscopy techniques (1H NMR, 13C NMR, 1H-1H COSY, 1H-13C HSQC, 1H-13C HMBC) with different deuterated solvents (Protic and aprotic solvents for exchangeable protons), which showed eight distinguished monomers (seven confirmed by HSQC spectrum and one from 1H spectrum). Semi-crystalline nature and thermal stability were confirmed by X-ray diffractogram and differential scanning calorimetry analysis, respectively. The EPS further shows antioxidant potential in a concentration-dependent manner. It can form a stable emulsion against different edible oil that makes it promising alternative for use in food, and pharmaceutical industries. Supplementary Information The online version contains supplementary material available at 10.1007/s13205-022-03279-z.
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Affiliation(s)
- Sanjeev Kumar Paikra
- Neural Developmental Biology Laboratory, Department of Life Science, National Institute of Technology Rourkela, Sun dergarh, Rourkela, Odisha 769008 India
| | - Jeetendra Panda
- Organocatalysis and Synthesis Laboratory, Department of Chemistry, National Institute of Technology Rourkela, Sundergarh, Rourkela, 769 008 India
| | - Gokarneswar Sahoo
- Organocatalysis and Synthesis Laboratory, Department of Chemistry, National Institute of Technology Rourkela, Sundergarh, Rourkela, 769 008 India
| | - Monalisa Mishra
- Neural Developmental Biology Laboratory, Department of Life Science, National Institute of Technology Rourkela, Sun dergarh, Rourkela, Odisha 769008 India
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22
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Alkhuder K. Attenuated total reflection-Fourier transform infrared spectroscopy: a universal analytical technique with promising applications in forensic analyses. Int J Legal Med 2022; 136:1717-1736. [PMID: 36050421 PMCID: PMC9436726 DOI: 10.1007/s00414-022-02882-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Accepted: 08/17/2022] [Indexed: 11/25/2022]
Abstract
Contemporary criminal investigations are based on the statements made by the victim and the eyewitnesses. They also rely on the physical evidences found in the crime scene. These evidences, and more particularly biological ones, have a great judicial value in the courtroom. They are usually used to revoke the suspect’s allegations and confirm or refute the statements made by the victim and the witnesses. Stains of body fluids are biological evidences highly sought by forensic investigators. In many criminal cases, the success of the investigation relies on the correct identification and classification of these stains. Therefore, the adoption of reliable and accurate forensic analytical methods seems to be of vital importance to attain this objective. Attenuated total reflection-Fourier transform infrared spectroscopy (ATR-FTIR) is a modern and universal analytical technique capable of fingerprint recognition of the analyte using minimal amount of the test sample. The current systematic review aims to through light on the fundamentals of this technique and to illustrate its wide range of applications in forensic investigations. ATR-FTIR is a nondestructive technique which has demonstrated an exceptional efficiency in detecting, identifying and discriminating between stains of various types of body fluids usually encountered in crime scenes. The ATR-FTIR spectral data generated from bloodstains can be used to deduce a wealth of information related to the donor species, age, gender, and race. These data can also be exploited to discriminate between stains of different types of bloods including menstrual and peripheral bloods. In addition, ATR-FTIR has a great utility in the postmortem investigations. More particularly, in estimating the postmortem interval and diagnosing death caused by extreme weather conditions. It is also useful in diagnosing some ambiguous death causes such as fatal anaphylactic shock and diabetic ketoacidosis.
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Affiliation(s)
- Khaled Alkhuder
- Division of Microbial Disease, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London, WC1X 8LD, UK.
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23
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Rodzik A, Railean V, Pomastowski P, Žuvela P, Wong MW, Sprynskyy M, Buszewski B. Study on silver ions binding to β-lactoglobulin. Biophys Chem 2022; 291:106897. [DOI: 10.1016/j.bpc.2022.106897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Revised: 09/13/2022] [Accepted: 09/22/2022] [Indexed: 11/02/2022]
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24
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Luo Z, Qin D, Wu Y, Meng S, Mo W, Deng B. An electrochemiluminescence immunosensor based on ABEI-GO-AgNPs as a double-amplified luminophore for the ultra-sensitive detection of prostate-specific antigen. Colloids Surf B Biointerfaces 2022; 218:112718. [PMID: 35905591 DOI: 10.1016/j.colsurfb.2022.112718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Revised: 07/18/2022] [Accepted: 07/21/2022] [Indexed: 10/16/2022]
Abstract
A sandwich electrochemiluminescence (ECL) immunosensor based on an N-(4-aminobutyl)-N-ethylisoluminol-graphene oxide-Ag nanoparticle (ABEI-GO-AgNPs) complex and cysteine silver nanowires (AgCysNWs) was prepared to detect prostate-specific antigen (PSA). Our results showed that an ECL signal probe, ABEI-GO-AgNPs, with an ultrahigh specific surface area, favorable catalytic properties, and electrical conductivity was prepared by a one-step synthesis method. ABEI-GO-AgNPs with good biocompatibility immobilized secondary antibody (Ab2) via AgN bonds. Furthermore, AgCysNWs containing many -COOH groups were prepared and used to enrich primary antibody (Ab1), which could be used as an affinity probe for the selective capture of PSA. Lastly, through layer-by-layer assembly, we established an ECL immunosensing platform for the sensitive detection of PSA. Under the optimized conditions, the designed ECL immunosensor showed promising sensitivity and selectivity for the detection of PSA in the linear range of 5.5 × 10-7-5.5 ng/mL, with a detection limit of 1.2 × 10-7 ng/mL. The constructed ECL sensing platform possessed good specificity, reproducibility, and stability and could detect PSA in actual human serum samples.
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Affiliation(s)
- Zhi Luo
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmaceutical Sciences, Guangxi Normal University, Guilin 541004, China
| | - Dongmiao Qin
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmaceutical Sciences, Guangxi Normal University, Guilin 541004, China
| | - Yusheng Wu
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmaceutical Sciences, Guangxi Normal University, Guilin 541004, China
| | - Shuo Meng
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmaceutical Sciences, Guangxi Normal University, Guilin 541004, China
| | - Weiming Mo
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmaceutical Sciences, Guangxi Normal University, Guilin 541004, China
| | - Biyang Deng
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmaceutical Sciences, Guangxi Normal University, Guilin 541004, China.
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25
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Abadian H, Cornette P, Costa D, Mezzetti A, Gervais C, Lambert JF. Leucine on Silica: A Combined Experimental and Modeling Study of a System Relevant for Origins of Life, and the Role of Water Coadsorption. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:8038-8053. [PMID: 35737817 DOI: 10.1021/acs.langmuir.2c00841] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Leucine on silica constitutes an interesting system from the point of view of origins of life studies since leucine coadsorbed on SiO2 together with glutamic acid can give rise to rather long linear polypeptides upon activation. It is also an ideal system to test methods of molecular characterization of biomolecules deposited on mineral surfaces since it combines a small-scale model of peptides and proteins, which are among the most important components of biodevices, with one of the most widely used inorganic materials. We have deposited l-leucine on a high surface fumed silica in the submonolayer range and characterized it by a multipronged approach including macroscopic information (thermogravimetry, X-ray diffraction), in situ spectroscopic methods (IR, multinuclear solid-state NMR including single-pulse and CP-MAS, 2-D HETCOR), and molecular modeling by density functional theory (DFT), including calculation of NMR parameters. Specific information can be obtained on the adsorption and interaction mechanism. Leucine is rather strongly adsorbed without any covalent bonds, through the formation of a specific lattice of H-bonds that often involve coadsorbed water molecules. Its state is indeed strongly dependent on the drying procedure: insufficient drying results in liquid-like surroundings for the leucine functional groups, while vacuum drying only retains a limited number of waters (of the order of 5 per leucine molecule). The most stable models have zwitterionic leucine interacting directly with surface silanols through their ammonium group, while the carboxylate interacts through bridging waters. Experimental NMR chemical shifts are satisfactorily predicted for these models, and leucine can be viewed as a probe for specific groups of surface sites known as silanol nests.
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Affiliation(s)
- Hagop Abadian
- Laboratoire de Réactivité de Surface (LRS, UMR 7609 CNRS), Case courrier 178, Sorbonne Université, 4 Place Jussieu, 75252 Paris Cedex 05, France
- Laboratoire de Chimie de la Matière Condensée de Paris (LCMCP, UMR 7574 CNRS), Case courrier 174, Sorbonne Université, 4 Place Jussieu, 75252 Paris Cedex 05, France
| | - Pauline Cornette
- Laboratoire de Réactivité de Surface (LRS, UMR 7609 CNRS), Case courrier 178, Sorbonne Université, 4 Place Jussieu, 75252 Paris Cedex 05, France
| | - Dominique Costa
- Institut de Recherche de Chimie Paris (IRCP, UMR8247 CNRS), 11 rue Pierre et Marie Curie, 75005 Paris, France
| | - Alberto Mezzetti
- Laboratoire de Réactivité de Surface (LRS, UMR 7609 CNRS), Case courrier 178, Sorbonne Université, 4 Place Jussieu, 75252 Paris Cedex 05, France
| | - Christel Gervais
- Laboratoire de Chimie de la Matière Condensée de Paris (LCMCP, UMR 7574 CNRS), Case courrier 174, Sorbonne Université, 4 Place Jussieu, 75252 Paris Cedex 05, France
| | - Jean-François Lambert
- Laboratoire de Réactivité de Surface (LRS, UMR 7609 CNRS), Case courrier 178, Sorbonne Université, 4 Place Jussieu, 75252 Paris Cedex 05, France
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26
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Alsalhi MS, Royall PG, Chan KLA. Mechanistic study of the solubilization effect of basic amino acids on a poorly water-soluble drug. RSC Adv 2022; 12:19040-19053. [PMID: 35865577 PMCID: PMC9240925 DOI: 10.1039/d2ra02870k] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Accepted: 06/15/2022] [Indexed: 11/21/2022] Open
Abstract
Amino acids have shown promising abilities to form complexes with poorly water-soluble drugs and improve their physicochemical properties for a better dissolution profile through molecular interactions. Salt formation via ionization between acidic drugs and basic amino acids is known as the major contributor to solubility enhancement. However, the mechanism of solubility enhancement due to non-ionic interactions, which is less pH-dependent, remains unclear. The aim of this study is to evaluate non-ionic interactions between a model acidic drug, indomethacin (IND), and basic amino acids, arginine, lysine and histidine, in water. At low concentrations of amino acids, IND-arginine and IND-lysine complexes have shown a linear relationship (AL-type phase solubility diagram) between IND solubility and amino acid concentration, producing ∼1 : 1 stoichiometry of drug-amino acid complexes as expected due to the strong electrostatic interactions. However, IND-histidine complexes have shown a nonlinear relationship with lower improvement in IND solubility due to the weaker electrostatic interactions when compared to arginine and lysine. Interestingly, the results have also shown that at high arginine concentrations, the linearity was lost between IND solubility and amino acid concentration with a negative diversion from linearity, following the type-AN phase solubility. This is indicative that the electrostatic interaction is being interrupted by non-electrostatic interactions, as seen with histidine. The IND-lysine complex, on the other hand, showed a complex curvature phase solubility diagram (type BS) as lysine self-assembles and polymerizes at higher concentrations. The freeze-dried drug-amino acid solids were further characterized using thermal analysis and infrared spectroscopy, with results showing the involvement of weak non-ionic interactions. This study shows that the solubility improvement of an insoluble drug in the presence of basic amino acids was due to both non-ionic and ionic interactions.
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Affiliation(s)
| | - Paul G Royall
- Institute of Pharmaceutical Science, King's College London SE1 9NH UK
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Hudson RL, Yarnall YY, Gerakines PA. Infrared Spectral Intensities of Amine Ices, Precursors to Amino Acids. ASTROBIOLOGY 2022; 22:452-461. [PMID: 35171042 DOI: 10.1089/ast.2021.0138] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Here, we address the paucity of infrared (IR) spectral data needed to quantify low-temperature experiments with amine ices, such as the formation of amino acids, by reporting new IR results on solid phases of methylamine (CH3NH2) and ethylamine (CH3CH2NH2), precursors to glycine and alanine, respectively. Mid-IR band strengths and absorption coefficients for CH3NH2 and CH3CH2NH2, in both amorphous and crystalline forms, are presented, along with measurements of a density and refractive index (670 nm) for each. For these same compounds, we also have calculated IR optical constants, and they are being made available in electronic form. Some applications of our new results are described along with proposals for future investigations. Suggestions are made related to the methods employed in such work, and particularly to the application of Beer's Law to the IR study of compounds of astrobiological interest. Comments are also included on the methods used, and the results presented in a recently published work on amino-acid IR intensities.
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Affiliation(s)
- Reggie L Hudson
- Astrochemistry Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
| | - Yukiko Y Yarnall
- Astrochemistry Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
- Universities Space Research Association, Greenbelt, Maryland, USA
| | - Perry A Gerakines
- Astrochemistry Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
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Iglesias-Groth S, Cataldo F. Integrated Molar Absorptivity of Mid- and Far-Infrared Spectra of Alanine and a Selection of Other Five Amino Acids of Astrobiological Relevance. ASTROBIOLOGY 2022; 22:462-480. [PMID: 35133882 DOI: 10.1089/ast.2021.0094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Alanine and other five proteinogeninc amino acids produced quite easily in exogenous and/or endogenous prebiotic processes, that is, valine, serine, proline, glutamic acid, and aspartic acid (Ala, Val, Ser, Pro, Glu, and Asp, respectively) were studied in the mid- and far-infrared spectral range. This work is an extension of the previous one where other proteinogenic amino acids glycine, isoleucine, phenylalanine, tyrosine, and tryptophan (Gly, Ile, Phe, Tyr, and Trp, respectively) were studied in the mid-infrared and in the far-infrared with the purpose to facilitate the search and identification of these astrobiological and astrochemical relevant molecules in space environments. The molar extinction coefficients (ɛ) of all mid- and far-infrared bands were determined as well as the integrated molar absorptivities (ψ). The mid-infrared spectra of Ala, Val, Ser, Pro, Glu, and Asp were recorded also at three different temperatures from -180°C to nearly ambient temperature and at 200°C. With the reported values of ɛ and ψ, it will be possible to estimate the relative abundance of these molecules in space environments.
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Kimura Y, Imanishi M, Li Y, Yura Y, Ohno T, Saga Y, Madigan MT, Wang-Otomo ZY. Identification of metal-sensitive structural changes in the Ca 2+-binding photocomplex from Thermochromatium tepidum by isotope-edited vibrational spectroscopy. J Chem Phys 2022; 156:105101. [DOI: 10.1063/5.0075600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Calcium ions play a dual role in expanding the spectral diversity and structural stability of photocomplexes from several Ca2+-requiring purple sulfur phototrophic bacteria. Here, metal-sensitive structural changes in the isotopically labeled light-harvesting 1 reaction center (LH1-RC) complexes from the thermophilic purple sulfur bacterium Thermochromatium ( Tch.) tepidum were investigated by perfusion-induced attenuated total reflection (ATR) Fourier transform infrared (FTIR) spectroscopy. The ATR-FTIR difference spectra induced by exchanges between native Ca2+ and exogenous Ba2+ exhibited interconvertible structural and/or conformational changes in the metal binding sites at the LH1 C-terminal region. Most of the characteristic Ba2+/Ca2+ difference bands were detected even when only Ca ions were removed from the LH1-RC complexes, strongly indicating the pivotal roles of Ca2+ in maintaining the LH1-RC structure of Tch. tepidum. Upon 15N-, 13C- or 2H-labeling, the LH1-RC complexes exhibited characteristic 15N/14N-, 13C/12C-, or 2H/1H-isotopic shifts for the Ba2+/Ca2+ difference bands. Some of the 15N/14N or 13C/12C bands were also sensitive to further 2H-labelings. Given the band frequencies and their isotopic shifts along with the structural information of the Tch. tepidum LH1-RC complexes, metal-sensitive FTIR bands were tentatively identified to the vibrational modes of the polypeptide main chains and side chains comprising the metal binding sites. Furthermore, important new IR marker bands highly sensitive to the LH1 BChl a conformation in the Ca2+-bound states were revealed based on both ATR-FTIR and near-infrared Raman analyses. The present approach provides valuable insights concerning the dynamic equilibrium between the Ca2+- and Ba2+-bound states statically resolved by x-ray crystallography.
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Affiliation(s)
- Yukihiro Kimura
- Graduate School of Agricultural Science, Kobe University, Kobe 657-8501, Japan
| | - Michie Imanishi
- Graduate School of Agricultural Science, Kobe University, Kobe 657-8501, Japan
| | - Yong Li
- Graduate School of Agricultural Science, Kobe University, Kobe 657-8501, Japan
| | - Yuki Yura
- Graduate School of Agricultural Science, Kobe University, Kobe 657-8501, Japan
| | - Takashi Ohno
- Graduate School of Agricultural Science, Kobe University, Kobe 657-8501, Japan
| | - Yoshitaka Saga
- Department of Chemistry, Faculty of Science and Engineering, Kindai University, Higashi-Osaka 577-8502, Japan
| | - Michael T. Madigan
- School of Biological Sciences, Department of Microbiology, Southern Illinois University, Carbondale, Illinois 62901, USA
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Saroha B, Kumar A, Raman Maurya R, Lal M, Kumar S, Kumar Rajor H, Bahadur I, Singh Negi D. Adsorption of cysteine on metal(II) octacynaomolybdate(IV) at different pH values: Surface complexes characterization by FT-IR, SEM with EDXA, CHNS and Langmuir isotherm analysis. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118197] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Liu J, Zhang F, Dou S, Zhu M, Ding L, Yang Y. Adsorption of serine at the anatase TiO 2/water interface: A combined ATR-FTIR and DFT study. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 807:150839. [PMID: 34627881 DOI: 10.1016/j.scitotenv.2021.150839] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Revised: 10/02/2021] [Accepted: 10/02/2021] [Indexed: 06/13/2023]
Abstract
Knowledge of the adsorption reactions between serine and minerals is critical to understanding the geochemical processes of amino acids (i.e., mobility, bioavailability, and degradation) in the environment. Attenuated total reflectance Fourier-transform infrared (ATR-FTIR) flow-cell measurements were used to distinguish the inner- and outer-sphere complexation and reveal the dynamic adsorption and desorption processes of each surface complex at the molecular level. Density functional theory (DFT) calculations were applied to determine the structures of the surface complexes and to justify the peak assignments of the serine dissolved in solution and adsorbed on TiO2. The structures of interfacial serine were governed by pH conditions but were not affected by the changes in adsorption time and serine concentration. The ATR-FTIR spectra and the results of DFT calculations resolved two different bidentate inner-sphere coordination, involving the COO- group of the serine zwitterion at pH 4-8 and the serine anion at pH 10. The dynamic adsorption processes of these two surface complexes conformed to the pseudo-second-order kinetic model. The stable inner-sphere complexation could not be entirely removed from the TiO2 surface upon serine desorption. In addition to reducing the migration rate in the environment, the bidentate inner-sphere coordination contributes to the potential degradation of the serine NH3+ and NH2 groups. Our research provides new insights into serine adsorption and desorption, facilitating further understanding of the fate and transport of amino acids in the environment.
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Affiliation(s)
- Jiaqi Liu
- School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250012, China
| | - Fengmei Zhang
- School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250012, China
| | - Shengping Dou
- School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250012, China
| | - Mengyao Zhu
- School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250012, China
| | - Lei Ding
- Environment Research Institute, Shandong University, Qingdao 266237, China
| | - Yanli Yang
- School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250012, China.
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Amiri-Sadeghan A, Dinari A, Mohammadi S, Zohrabi T, Khodarahmi R, Hosseinkhani S, Yoon J. Phenylalanine gold nanoclusters as sensing platform for π-π interfering molecules: a case study of iodide. Sci Rep 2022; 12:2235. [PMID: 35140246 PMCID: PMC8828767 DOI: 10.1038/s41598-022-05155-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 12/08/2021] [Indexed: 11/09/2022] Open
Abstract
The photo-physical properties of metal nano clusters are sensitive to their surrounding medium. Fluorescence enhancement, quenching, and changes in the emitted photon properties are usual events in the sensing applications using these nano materials. Combining this sensitivity with unique properties of self-assembled structures opens new opportunities for sensing applications. Here, we synthesized gold nanoclusters by utilizing phenylalanine amino acid as both capping and reducing molecule. Phenylalanine is able to self-assemble to rod-shaped nano structure in which the π-π interaction between the aromatic rings is a major stabilizing force. Any substance as iodide anion or molecule that is able to weaken this interaction influence the fluorescence of metal nano-clusters. Since the building blocks of the self-assembled structure are made through the reaction of gold ions and phenylalanine, the oxidized products and their effect of sensing features are explored.
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Affiliation(s)
- Amir Amiri-Sadeghan
- Tuberculosis and Lung Diseases Research Center, Tabriz University of Medical Sciences, Tabriz, Iran
| | - Ali Dinari
- Research Center for Nanorobotics in BrainGIST Gwangju Institute of Science and Technology, 123 Cheomdan-Gwagiro (Oryong-Dong), Buk-gu, Gwangju, 61005, Korea
| | - Soheila Mohammadi
- Nano Drug Delivery Research Center, Health Technology Institute, Kermanshah University of Medical Sciences, Kermanshah, Iran. .,Pharmaceutical Sciences Research Center, Health Institute, Kermanshah University of Medical Sciences, Kermanshah, Iran.
| | - Tayebeh Zohrabi
- Department of Nanobiotechnology, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran
| | - Reza Khodarahmi
- Medical Biology Research Center, Health Technology Institute, Kermanshah University of Medical Sciences, Kermanshah, Iran.,Department of Pharmacognosy and Biotechnology, Faculty of Pharmacy, Kermanshah University of Medical Sciences, Kermanshah, Iran
| | - Saman Hosseinkhani
- Department of Biochemistry, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran
| | - Jungwon Yoon
- School of Integrated Technology, Gwangju Institute of Science and Technology, Gwangju, 61005, South Korea
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Holzapfel K, Liu J, Rades T, Leopold CS. (Co-)amorphization of enantiomers - Investigation of the amorphization process, the physical stability and the dissolution behavior. Int J Pharm 2022; 616:121552. [PMID: 35131351 DOI: 10.1016/j.ijpharm.2022.121552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2021] [Revised: 02/01/2022] [Accepted: 02/02/2022] [Indexed: 10/19/2022]
Abstract
A novel approach for improvement of the aqueous solubility of poorly water soluble compounds applying co-amorphous systems was investigated by application of the enantiomers of the chiral amino acid tryptophan (TRP) as the model system. (Co-)amorphization of various forms of crystalline TRP was achieved by ball milling. Solid state analysis demonstrated significant differences in the amorphization tendency and physical stability between the two TRP enantiomers alone, the TRP racemate and an equimolar physical mixture of D- and L-TRP (TRP conglomerate). Ball milling for 6 h was required to obtain fully amorphous plain D- and L-TRP, whereas the TRP racemate and the TRP conglomerate were transformed into their amorphous forms already within 90 and 60 min of ball milling, respectively. Physical stability of the co-amorphous TRP conglomerate was observed for up to 60 d at ambient conditions as well as 40 °C/0 % RH. In contrast, the amorphous TRP racemate showed a reduced physical stability under ambient conditions. Interestingly, the intrinsic dissolution rates of the amorphous TRP conglomerate and racemate were not higher than those of the respective crystalline forms. In conclusion, applying two enantiomers of a chiral compound may be a promising approach for fast amorphization of an API and for improving the physical stability of the resulting amorphous form.
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Affiliation(s)
- Katharina Holzapfel
- Division of Pharmaceutical Technology, Dept. of Chemistry, University of Hamburg, Bundesstraße 45, 20146 Hamburg, Germany
| | - Jingwen Liu
- Dept. of Pharmacy, University of Copenhagen, Universitetsparken 2, DK-2100, Denmark
| | - Thomas Rades
- Dept. of Pharmacy, University of Copenhagen, Universitetsparken 2, DK-2100, Denmark
| | - Claudia S Leopold
- Division of Pharmaceutical Technology, Dept. of Chemistry, University of Hamburg, Bundesstraße 45, 20146 Hamburg, Germany.
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Renu S, Sarim KM, Singh DP, Sahu U, Bhoyar MS, Sahu A, Kaur B, Gupta A, Mandal A, Thakur JK, Manna MC, Saxena AK. Deciphering Cadmium (Cd) Tolerance in Newly Isolated Bacterial Strain, Ochrobactrum intermedium BB12, and Its Role in Alleviation of Cd Stress in Spinach Plant ( Spinacia oleracea L.). Front Microbiol 2022; 12:758144. [PMID: 35140690 PMCID: PMC8819065 DOI: 10.3389/fmicb.2021.758144] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Accepted: 12/13/2021] [Indexed: 11/18/2022] Open
Abstract
A cadmium (Cd)-tolerant bacterium Ochrobactrum intermedium BB12 was isolated from sewage waste collected from the municipal sewage dumping site of Bhopal, India. The bacterium showed multiple heavy metal tolerance ability and had the highest minimum inhibitory concentration of 150 mg L-1 of Cd. Growth kinetics, biosorption, scanning electron microscopy (SEM), transmission electron microscopy (TEM), and Fourier transform infrared (FTIR) spectroscopy studies on BB12 in the presence of Cd suggested biosorption as primary mode of interaction. SEM and TEM studies revealed surface deposition of Cd. FTIR spectra indicated nitrogen atom in exopolysaccharides secreted by BB12 to be the main site for Cd attachment. The potential of BB12 to alleviate the impact of Cd toxicity in spinach plants (Spinacia oleracea L.) var. F1-MULAYAM grown in the soil containing Cd at 25, 50, and 75 mg kg-1 was evaluated. Without bacterial inoculation, plants showed delayed germination, decrease in the chlorophyll content, and stunted growth at 50 and 75 mg kg-1 Cd content. Bacterial inoculation, however, resulted in the early germination, increased chlorophyll, and increase in shoot (28.33%) and root fresh weight (72.60%) at 50 mg kg-1 of Cd concentration after 75 days of sowing. Due to bacterial inoculation, elevated proline accumulation and lowered down superoxide dismutase (SOD) enzyme activity was observed in the Cd-stressed plants. The isolate BB12 was capable of alleviating Cd from the soil by biosorption as evident from significant reduction in the uptake/translocation and bioaccumulation of Cd in bacteria itself and in the plant parts of treated spinach. Potential PGP prospects and heavy metal bioremediation capability of BB12 can make the environmental application of the organism a promising approach to reduce Cd toxicity in the crops grown in metal-contaminated soils.
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Affiliation(s)
- S. Renu
- ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan, India
| | - Khan Mohd. Sarim
- ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan, India
| | - Dhananjaya Pratap Singh
- ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan, India
- ICAR-Indian Institute of Vegetable Research, Varanasi, India
| | - Upasana Sahu
- ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan, India
| | - Manish S. Bhoyar
- Intellectual Property Management Unit, National Innovation Foundation, Gandhinagar, India
| | - Asha Sahu
- ICAR-Indian Institute of Soil Sciences, Bhopal, India
| | - Baljeet Kaur
- ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Amrita Gupta
- ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan, India
| | - Asit Mandal
- ICAR-Indian Institute of Soil Sciences, Bhopal, India
| | | | | | - Anil Kumar Saxena
- ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan, India
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The Role of the pH in the Impregnation of Spherical Mesoporous Silica Particles with L-Arginine Aqueous Solutions. Int J Mol Sci 2021; 22:ijms222413403. [PMID: 34948206 PMCID: PMC8703690 DOI: 10.3390/ijms222413403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 12/10/2021] [Accepted: 12/12/2021] [Indexed: 11/16/2022] Open
Abstract
In the context of the development of carriers for amino acids delivery, Spherical Mesoporous Silica Particles (SMSP), characterized by particles size ranging from 0.15 µm to 0.80 µm and average pore diameter of 2.4 nm, were synthesised and loaded with L-arginine (ARG), a basic amino acid involved in several physiological processes. The loading was performed using water as a solvent through the wet impregnation method (with a final arginine content of 9.1% w/w). The material was characterized before and after impregnation by means of X-Ray Diffraction (XRD), nitrogen sorption analysis, Field Emission Scanning Electron Microscopy (FESEM) and Fourier Transform Infrared (FT-IR) spectroscopy. SMSP are shown to suffer degradation upon impregnation, which dramatically affects their porosity. To elucidate the role of the pH of the ARG impregnating solution (originally set at pH ≈ 11) on SMSP degradation, the loading was performed under different pH conditions (5 and 9) keeping constant the ARG concentration. The impregnation performed with acidic solution did not modify the carrier. All samples displayed ARG in amorphous form: zwitterionic species were present in SMSP impregnated at basic pH whereas positive protonated species in that impregnated at acidic pH.
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Goloshchapov D, Kashkarov V, Nikitkov K, Seredin P. Investigation of the Effect of Nanocrystalline Calcium Carbonate-Substituted Hydroxyapatite and L-Lysine and L-Arginine Surface Interactions on the Molecular Properties of Dental Biomimetic Composites. Biomimetics (Basel) 2021; 6:70. [PMID: 34940013 PMCID: PMC8698581 DOI: 10.3390/biomimetics6040070] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Revised: 12/06/2021] [Accepted: 12/09/2021] [Indexed: 01/06/2023] Open
Abstract
Differences in the surface interactions of non-stoichiometric nanocrystalline B-type carbonate-substituted hydroxyapatite (n-cHAp) with the amino acids L-Lysine hydrochloride (L-LysHCl) and L-Arginine hydrochloride (L-ArgHCl) in acidic and alkaline media were determined using structural and spectroscopic analysis methods. The obtained data confirm that hydroxyapatite synthesized using our technique, which was used to develop the n-cHAp/L-LysHCl and n-cHAp/L-ArgHCl composites, is nanocrystalline. Studies of molecular composition of the samples by Fourier transform infrared spectroscopy under the change in the charge state of L-Lysine in environments with different alkalinity are consistent with the results of X-ray diffraction analysis, as evidenced by the redistribution of the modes' intensities in the spectra that is correlated with the side chains, i.e., amide and carboxyl groups, of the amino acid. During the formation of a biomimetic composite containing L-Lysine hydrochloride and n-cHAp, the interaction occurred through bonding of the L-Lysine side chain and the hydroxyl groups of hydroxyapatite, which created an anionic form of L-Lysine at pH ≤ 5. In contrast, in biocomposites based on L-Arginine and n-cHAp, the interaction only slightly depends on pH value, and it proceeds by molecular orientation mechanisms. The X-ray diffraction and infrared spectroscopy results confirm that changes in the molecular composition of n-cHAp/L-ArgHCl biomimetic composites are caused by the electrostatic interaction between the L-ArgHCl molecule and the carbonate-substituted calcium hydroxyapatite. In this case, the bond formation was detected by Fourier transform infrared (FTIR) spectroscopy; the vibrational modes attributed to the main carbon chain and the guanidine group of L-Arginine are shifted during the interaction. The discovered interaction mechanisms between nanocrystalline carbonate-substituted hydroxyapatite that has physicochemical properties characteristic of the apatite in human dental enamel and specific amino acids are important for selecting the formation conditions of biomimetic composites and their integration with the natural dental tissue.
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Affiliation(s)
- Dmitry Goloshchapov
- Solid State Physics and Nanostructures Department, Voronezh State University, University Sq. 1, 394018 Voronezh, Russia; (D.G.); (V.K.); (K.N.)
| | - Vladimir Kashkarov
- Solid State Physics and Nanostructures Department, Voronezh State University, University Sq. 1, 394018 Voronezh, Russia; (D.G.); (V.K.); (K.N.)
| | - Kirill Nikitkov
- Solid State Physics and Nanostructures Department, Voronezh State University, University Sq. 1, 394018 Voronezh, Russia; (D.G.); (V.K.); (K.N.)
| | - Pavel Seredin
- Solid State Physics and Nanostructures Department, Voronezh State University, University Sq. 1, 394018 Voronezh, Russia; (D.G.); (V.K.); (K.N.)
- Scientific and Educational Center “Nanomaterials and Nanotechnologies”, Ural Federal, Mir Av., 620002 Yekaterinburg, Russia
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Buchanan C, Hinds MG, Puskar L, Garvey CJ, Mechler A. Comprehensive multidimensional study of the self-assembly properties of a three residue substituted β3 oligoamide. PURE APPL CHEM 2021. [DOI: 10.1515/pac-2021-0324] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Substituted β3 oligoamides form a unique self-assembling system where each monomer folds into a helix containing approximately three β3 amino acids per turn, yielding a geometrically well-defined cylindrical building block that, when N-acylated, is able to self-assemble head-to-tail into nanorods that can reach several 100 μm length. It was shown in previous works that self-assembly can be achieved with a three residue long oligoamide as well that lacks any intramolecular H-bonds, yet it crystallizes in a helix-like conformation. The self-assembly properties of these small oligoamides are however elusive, suggesting a more complex system than the self-assembly of the H-bond stabilized helical monomers. Here we focus on the self-assembly behaviour of a three residue oligoamide, Ac-β3[LIA] where the letters denote the side chain of the analogous α amino acid. Ac-β3[LIA] can yield highly inhomogeneous suspensions in water with a broad range of large fibrous structures that seem to be very stable, yet occasionally fibre growth is only observed upon heating. The small size of the monomer suggests a highly dynamic equilibrium yet all previous attempts failed to clearly identify low molecular weight species. Therefore a special methodology was employed in this study to characterize the suspensions at different size ranges: SANS that is optimal to measure the small oligomers and cross sectional diameter of the assemblies, DLS that is sensitive to the large populations and therefore the length of the superstructures, and NMR that is sensitive to monomeric and small oligomeric form, in conjunction with IR spectroscopy to probe the folding and AFM to image the morphology of the assemblies. Temperature ramping was used to perturb the system to probe the dynamicity of the self-assembly. It was found that the anomalous self-assembly behaviour of Ac-β3[LIA] is caused by its two stable conformations, a helix-building “horseshoe” fold and a linear conformer. The latter is exclusively found in monomeric form in solution whereas the horseshoe fold is stable in solid phase and in fibrous assemblies. Small oligomers were absent. Thus the self-assembly of Ac-β3[LIA] is arrested by the activation energy need of the conformation change; fibre growth might be triggered by conditions that allow increased conformational freedom of the monomers. This observation may be used to develop strategies for controlled switchable self-assembly.
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Affiliation(s)
- Claire Buchanan
- Department of Chemistry and Physics , Latrobe University , Bundoora , Australia
| | - Mark G. Hinds
- Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne , Parkville , Australia
| | - Ljiljana Puskar
- Helmholtz Zentrum Berlin für Materialien und Energie GmbH , Berlin , Germany
| | - Christopher J. Garvey
- Lund Institute for Advanced Neutron and X-Ray Science , 223 70 Lund , Sweden
- Biofilm-Research Center for Biointerfaces and Biomedical Science Department , Faculty of Health and Society, Malmo University , 211 19 Malmo , Sweden
| | - Adam Mechler
- Department of Chemistry and Physics , Latrobe University , Bundoora , Australia
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De Meutter J, Goormaghtigh E. Protein Structural Denaturation Evaluated by MCR-ALS of Protein Microarray FTIR Spectra. Anal Chem 2021; 93:13441-13449. [PMID: 34592098 DOI: 10.1021/acs.analchem.1c01416] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The loss of native structure is common in proteins. Among others, aggregation is one structural modification of particular importance as it is a major concern for the efficiency and safety of biotherapeutic proteins. Yet, recognizing the structural features associated with intermolecular bridging in a high-throughput manner remains a challenge. We combined here the use of protein microarrays spotted at a density of ca 2500 samples per cm2 and Fourier transform infrared (FTIR) imaging to analyze structural modifications in a set of 85 proteins characterized by widely different secondary structure contents, submitted or not to mild denaturing conditions. Multivariate curve resolution alternating least squares (MCR-ALS) was used to model a new spectral component appearing in the protein set subject to denaturing conditions. In the native protein set, 6 components were found to be sufficient to obtain good modeling of the spectra. Furthermore, their shape allowed them to be assigned to α-helix, β-sheet, and other structures. Their content in each protein was correlated with the known secondary structure, confirming these assignments. In the denatured proteins, a new component was necessary and modeled by MCR-ALS. This new component could be assigned to the intermolecular β-sheet, bridging protein molecules. MCR-ALS, therefore, unveiled a potential spectroscopic marker of protein aggregation and allowed a semiquantitative evaluation of its content. Insight into other structural rearrangements was also obtained.
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Affiliation(s)
- Joëlle De Meutter
- Center for Structural Biology and Bioinformatics, Laboratory for the Structure and Function of Biological Membranes, Campus Plaine, Université Libre de Bruxelles CP206/2, B1050 Brussels, Belgium
| | - Erik Goormaghtigh
- Center for Structural Biology and Bioinformatics, Laboratory for the Structure and Function of Biological Membranes, Campus Plaine, Université Libre de Bruxelles CP206/2, B1050 Brussels, Belgium
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Sun F, Tao R, Liu Q, Wang H, Kong B. Effects of temperature and pH on the structure of a metalloprotease from Lactobacillus fermentum R6 isolated from Harbin dry sausages and molecular docking between protease and meat protein. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2021; 101:5016-5027. [PMID: 33548144 DOI: 10.1002/jsfa.11146] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2020] [Revised: 02/03/2021] [Accepted: 02/06/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND Microbial protease can interact with meat protein in fermented meat products at a certain pH and temperature. To investigate the effects of various pH values and temperatures on the structural characteristics of Lactobacillus fermentum R6 protease, which was isolated from Harbin dry sausages, spectroscopy techniques and molecular dynamics were utilized to evaluate structural changes. RESULTS The protease exhibited a stable spatial structure at pH 7 and 40 °C, and the extension of the protease structure was also promoted. Although the structure of the protease could be changed or destroyed by pH 8 and 70 °C, it was mainly determined by the changes of secondary and tertiary structures such as α-helix, β-sheet, β-turn and random coil. In addition, carbonyl vibration, -NH vibration, C-H stretching vibration and disulphide bonds were present in L. fermentum R6 protease under various pH and temperature conditions. Molecular docking showed that the protease can interact with myosin light chain, myosin heavy chain, actin and myoglobin. CONCLUSION The protease can maintain stable structure and interact with meat protein, which reflected certain application prospects in the fermentation of Harbin dry sausages. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Fangda Sun
- College of Food Science, Northeast Agricultural University, Harbin, China
| | - Ran Tao
- Department of Food Science and Agricultural Chemistry, McGill University, Sainte-Anne-de-Bellevue, QC, Canada
| | - Qian Liu
- College of Food Science, Northeast Agricultural University, Harbin, China
| | - Hui Wang
- College of Food Science, Northeast Agricultural University, Harbin, China
| | - Baohua Kong
- College of Food Science, Northeast Agricultural University, Harbin, China
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40
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Seiça AFS, Iqbal MH, Carvalho A, Choe JY, Boulmedais F, Hellwig P. Study of Membrane Protein Monolayers Using Surface-Enhanced Infrared Absorption Spectroscopy (SEIRAS): Critical Dependence of Nanostructured Gold Surface Morphology. ACS Sens 2021; 6:2875-2882. [PMID: 34347437 DOI: 10.1021/acssensors.1c00238] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Surface-enhanced infrared absorption spectroscopy (SEIRAS) is a powerful tool that allows studying the reactivity of protein monolayers at very low concentrations and independent from the protein size. In this study, we probe the surface's morphology of electroless gold deposition for optimum enhancement using two different types of immobilization adapted to two proteins. Independently from the mode of measurement (i.e., transmission or reflection) or type of protein immobilization (i.e., through electrostatic interactions or nickel-HisTag), the enhancement and reproducibility of protein signals in the infrared spectra critically depended on the gold nanostructured surface morphology deposited on silicon. Just a few seconds deviation from the optimum time in the nanoparticle deposition led to a significantly weaker enhancement. Scanning electron microscopy and atomic force microscopy measurements revealed the evolution of the nanostructured surface when comparing different deposition times. The optimal deposition time led to isolated gold nanostructures on the silicon crystal. Importantly, in the case of the immobilization using nickel-HisTag, the surface morphology is rearranged upon immobilization of linker and the protein. A complex three-dimensional (3D) network of nanoparticles decorated with the protein could be observed leading to the optimal enhancement. The electroless deposition of gold is a simple technique, which can be adapted to flow cells and used in analytical approaches.
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Affiliation(s)
- Ana F. S. Seiça
- Laboratory of Bioelectrochemistry and Spectroscopy, UMR 7140 University of Strasbourg CNRS, 4 Rue Blaise Pascal, 67081 Strasbourg, France
| | - Muhammad Haseeb Iqbal
- University of Strasbourg, CNRS, Institut Charles Sadron, UPR 222, 67034 Strasbourg, France
| | - Alain Carvalho
- University of Strasbourg, CNRS, Institut Charles Sadron, UPR 222, 67034 Strasbourg, France
| | - Jun-yong Choe
- East Carolina Diabetes and Obesity Institute, East Carolina University, Greenville, North Carolina 27834, United States
| | - Fouzia Boulmedais
- University of Strasbourg, CNRS, Institut Charles Sadron, UPR 222, 67034 Strasbourg, France
| | - Petra Hellwig
- Laboratory of Bioelectrochemistry and Spectroscopy, UMR 7140 University of Strasbourg CNRS, 4 Rue Blaise Pascal, 67081 Strasbourg, France
- University of Strasbourg Institute for Advanced Studies (USIAS), 4 Rue Blaise Pascal, 67081 Strasbourg, France
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The selective adsorption performance and mechanism of multiwall magnetic carbon nanotubes for heavy metals in wastewater. Sci Rep 2021; 11:16878. [PMID: 34413419 PMCID: PMC8377063 DOI: 10.1038/s41598-021-96465-7] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Accepted: 08/05/2021] [Indexed: 11/08/2022] Open
Abstract
The safe treatment of heavy metals in wastewater is directly related to human health and social development. In this paper, a new type of recyclable adsorbent is synthesized through the oxidation of enhancer and modification with magnetic nanoparticles. The new adsorbent not only inherits the advantages of multiwall carbon nanotubes (6O-MWCNTs), but also exhibits a new magnetic property and further improved adsorption capacity, which is conducive to the magnetic separation and recovery of heavy metals. The adsorption results indicate that multiwall magnetic carbon nanotubes (6O-MWCNTs@Fe3O4) have a good performance for Pb(II) selective adsorption, with a maximum adsorption capacity of 215.05 mg/g, much higher than the existing adsorption capacity of the same type of adsorbents. Under the action of an external magnetic field, 6O-MWCNTs@Fe3O4 that adsorbed metal ions can quickly achieve good separation from the solution. The joint characterization results of FTIR and XPS show that under the action of both coordination and electrostatic attraction, the C=O bond in the -COOH group is induced to open by the metal ions and transforms into an ionic bond, and the metal ions are stably adsorbed on the surface of 6O-MWCNTs@Fe3O4. Pb(II) has a stronger attraction than Cu(II) and Cd(II) to the lone pair of electrons in oxygen atoms to form complexes, due to the covalent index of Pb (6.41) is more larger than that of Cu (2.98) and Cd (2.71).These data provide a new type of recyclable adsorbent for the efficient treatment of heavy metal ions in wastewater and enrich relevant theoretical knowledge.
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Lee JH, Li S, Yoo JB, Kim YJ. Effects of Various Transition Metals on the Thermal Oxidative Stabilization of Polyacrylonitrile Nanofibers. J Inorg Organomet Polym Mater 2021. [DOI: 10.1007/s10904-021-01954-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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43
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Brito AMM, Oliveira V, Icimoto MY, Nantes-Cardoso IL. Collagenase Activity of Bromelain Immobilized at Gold Nanoparticle Interfaces for Therapeutic Applications. Pharmaceutics 2021; 13:1143. [PMID: 34452104 PMCID: PMC8401344 DOI: 10.3390/pharmaceutics13081143] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Revised: 06/28/2021] [Accepted: 07/05/2021] [Indexed: 11/16/2022] Open
Abstract
Bromelain (Bro) is a multiprotein complex extracted from the pineapple plant Ananas comosus, composed of at least eight cysteine proteases. Bro has a wide range of applications in medicine and industry, where the stability of its active proteases is always a major concern. The present study describes the improvement of stability and gain of specific activity in the enzymatic content of Bro immobilized on gold nanoparticles (GNPs). GNPs were synthesized in situ using Bro as the reducing and stabilizing agents and characterized by surface plasmon resonance and transmission electron microscopy. Consistent with the structural changes observed by circular dichroism analysis, the association with GNPs affected enzyme activity. The active Bro immobilized on GNPs (NanoBro) remained stable under storage and gained thermal stability consistent with a thermophilic enzyme. Proteolytic assays were performed on type I collagen membranes using fluorescence spectroscopy of O-phthaldialdehyde (OPA), changes in the membrane superficial structure, and topography by scanning electron microscopy, FTIR, and scanning laser confocal microscopy. Another characteristic of the NanoBro observed was the significant increase in susceptibility to the inhibitory effect of E-64, indicating a gain in cysteine protease activity. The higher stability and specific activity of NanoBro contributed to the broadening and improvement of Bro applications.
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Affiliation(s)
- Adrianne M. M. Brito
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, Santo André CEP 09210-580, SP, Brazil;
| | - Vitor Oliveira
- Departamento de Biofísica, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo CEP 04039-032, SP, Brazil;
| | - Marcelo Y. Icimoto
- Departamento de Biofísica, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo CEP 04039-032, SP, Brazil;
| | - Iseli L. Nantes-Cardoso
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, Santo André CEP 09210-580, SP, Brazil;
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Pinto SMV, Tasinato N, Barone V, Zanetti-Polzi L, Daidone I. A computational insight into the relationship between side chain IR line shapes and local environment in fibril-like structures. J Chem Phys 2021; 154:084105. [PMID: 33639764 DOI: 10.1063/5.0038913] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
Infrared spectroscopy is a widely used technique to characterize protein structures and protein mediated processes. While the amide I band provides information on proteins' secondary structure, amino acid side chains are used as infrared probes for the investigation of protein reactions and local properties. In this paper, we use a hybrid quantum mechanical/classical molecular dynamical approach based on the perturbed matrix method to compute the infrared band due to the C=O stretching mode of amide-containing side chains. We calculate, at first, the infrared band of zwitterionic glutamine in water and obtain results in very good agreement with the experimental data. Then, we compute the signal arising from glutamine side chains in a microcrystal of the yeast prion Sup35-derived peptide, GNNQQNY, with a fibrillar structure. The infrared bands obtained by selective isotopic labeling of the two glutamine residues, Q4 and Q5, of each peptide were experimentally used to investigate the local hydration in the fibrillar microcrystal. The experimental spectra of the two glutamine residues, which experience different hydration environments, feature different spectral signals that are well reproduced by the corresponding calculated spectra. In addition, the analysis of the simulated spectra clarifies the molecular origin of the experimentally observed spectroscopic differences that arise from the different local electric field experienced by the two glutamine residues, which is, in turn, determined by a different hydrogen bonding pattern.
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Affiliation(s)
- Sandra M V Pinto
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy
| | - Nicola Tasinato
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy
| | | | - Isabella Daidone
- Department of Physical and Chemical Sciences, University of L'Aquila, Via Vetoio, I-67100 L'Aquila, Italy
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45
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Proniewicz E, Burnat G, Domin H, Małuch I, Makowska M, Prahl A. Application of Alanine Scanning to Determination of Amino Acids Essential for Peptide Adsorption at the Solid/Solution Interface and Binding to the Receptor: Surface-Enhanced Raman/Infrared Spectroscopy versus Bioactivity Assays. J Med Chem 2021; 64:8410-8422. [PMID: 34110823 PMCID: PMC8279479 DOI: 10.1021/acs.jmedchem.1c00397] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Indexed: 12/02/2022]
Abstract
The article describes the application of the alanine-scanning technique used in combination with Raman, surface-enhanced Raman, attenuated total reflection Fourier transform infrared, and surface-enhanced infrared absorption (SEIRA) spectroscopies, which allowed defining the role of individual amino acid residues in the C-terminal 6-14 fragment of the bombesin chain (BN6-14) on the path of its adsorption on the surface of Ag (AgNPs) and Au nanoparticles (AuNPs). A reliable analysis of the SEIRA spectra of these peptides was possible, thanks to a curve fitting of these spectra. By combining alanine-scanning with biological activity studies using cell lines overexpressing bombesin receptors and the intracellular inositol monophosphate assay, it was possible to determine which peptide side chains play a significant role in binding a peptide to membrane-bound G protein-coupled receptors (GPCRs). Based on the analysis of spectral profiles and bioactivity results, conclusions for the specific peptide-metal and peptide-GPCR interactions were drawn and compared.
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Affiliation(s)
- Edyta Proniewicz
- Faculty
of Foundry Engineering, AGH University of
Science and Technology, 30-059 Krakow, Poland
| | - Grzegorz Burnat
- Maj
Institute of Pharmacology, Polish Academy of Sciences, Department of Neurobiology, 31-343 Kraków, 12 Smętna Street, Poland
| | - Helena Domin
- Maj
Institute of Pharmacology, Polish Academy of Sciences, Department of Neurobiology, 31-343 Kraków, 12 Smętna Street, Poland
| | - Izabela Małuch
- Faculty
of Chemistry, University of Gdansk, Wita Stwosza 63, 80-308 Gdansk, Poland
| | - Marta Makowska
- Faculty
of Chemistry, University of Gdansk, Wita Stwosza 63, 80-308 Gdansk, Poland
| | - Adam Prahl
- Faculty
of Chemistry, University of Gdansk, Wita Stwosza 63, 80-308 Gdansk, Poland
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Ripanti F, Luchetti N, Nucara A, Minicozzi V, Venere AD, Filabozzi A, Carbonaro M. Normal mode calculation and infrared spectroscopy of proteins in water solution: Relationship between amide I transition dipole strength and secondary structure. Int J Biol Macromol 2021; 185:369-376. [PMID: 34157332 DOI: 10.1016/j.ijbiomac.2021.06.092] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2021] [Revised: 06/11/2021] [Accepted: 06/13/2021] [Indexed: 11/28/2022]
Abstract
Dipole Strength (DS) of the amides has gained a renewed interest in chemical physics since it provides an important tool to disclose the on-site vibrational energy distributions. Apart from earlier experimental efforts on polypeptides, little is still known about DS in complex proteins. We accurately measured the Fourier Transform Infrared absorption spectra of nine proteins in water solution obtaining their Molar Extinction Coefficient in the amide I and II spectral region. Our results show that the amide I DS value depends on the protein secondary structure, being that of the α-rich and unstructured proteins lower by a factor of 2 than that of the β-rich proteins. The average DS for amino acids in α and β secondary structures confirms this finding. Normal Mode calculation and Molecular Dynamics were performed and used as tools for data analysis and interpretation. The present outcomes corroborate the hypothesis that antiparallel β-sheet environment is more prone to delocalize the on-site CO stretching vibration through coupling mechanisms between carbonyl groups, whereas α-helix structures are energetically less stable to permit vibrational mode delocalization.
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Affiliation(s)
- Francesca Ripanti
- Department of Physics, Sapienza University of Rome, P.le A. Moro 5, 00185 Rome, Italy
| | - Nicole Luchetti
- Department of Physics and INFN, Tor Vergata University of Rome, Via della Ricerca Scientifica 1, 00133 Rome, Italy
| | - Alessandro Nucara
- Department of Physics, Sapienza University of Rome, P.le A. Moro 5, 00185 Rome, Italy.
| | - Velia Minicozzi
- Department of Physics and INFN, Tor Vergata University of Rome, Via della Ricerca Scientifica 1, 00133 Rome, Italy
| | - Almerinda Di Venere
- Department of Experimental Medicine, Tor Vergata University of Rome, Via Montpellier 1, 00133 Rome, Italy
| | - Alessandra Filabozzi
- Department of Physics and INFN, Tor Vergata University of Rome, Via della Ricerca Scientifica 1, 00133 Rome, Italy
| | - Marina Carbonaro
- Council for Agricultural Research and Economics (CREA), Research Centre for Food and Nutrition, Via Ardeatina 546, 00178 Rome, Italy
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Hetmańczyk J, Hetmańczyk Ł, Nowicka-Scheibe J, Pawlukojć A, Maurin JK, Schilf W. Structural, Thermal, and Vibrational Properties of N,N-Dimethylglycine-Chloranilic Acid-A New Co-Crystal Based on an Aliphatic Amino Acid. MATERIALS 2021; 14:ma14123292. [PMID: 34198707 PMCID: PMC8232199 DOI: 10.3390/ma14123292] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Revised: 06/02/2021] [Accepted: 06/09/2021] [Indexed: 02/06/2023]
Abstract
The new complex of N,N-Dimethylglycine (DMG) with chloranilic acid (CLA) was synthesized and examined for thermal, structural, and dynamical properties. The structure of the reaction product between DMG and CLA was investigated in a deuterated dimethyl sulfoxide (DMSO-d6) solution and in the solid state by Nuclear Magnetic Resonance (NMR) (Cross Polarization Magic Angle Spinning-CPMAS NMR). The formation of the 1:1 complex of CLA and DMG in the DMSO solution was also confirmed by diffusion measurement. X-ray single crystal diffraction results revealed that the N,N-dimethylglycine–chloranilic acid (DMG+–CLA−) complex crystallizes in the centrosymmetric triclinic P-1 space group. The X-ray diffraction and NMR spectroscopy show the presence of the protonated form of N,N-dimethylglycine and the deprotonated form of chloranilic acid molecules. The vibrational properties of the co-crystal were investigated by the use of neutron (INS), infrared (IR), and Raman (RS) spectroscopies, as well as the density functional theory (DFT) with periodic boundary conditions. From the band shape analysis of the N–CH3 bending vibration, we can conclude that the CH3 groups perform fast (τR ≈ 10−11 to 10‒13 s) reorientational motions down to a temperature of 140 K, with activation energy at ca. 6.7 kJ mol−1. X-ray diffraction and IR investigations confirm the presence of a strong N+–H···O− hydrogen bond in the studied co-crystal.
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Affiliation(s)
- Joanna Hetmańczyk
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2 Str., 30-387 Cracow, Poland;
- Correspondence: ; Tel.: +48-12-686-24-31
| | - Łukasz Hetmańczyk
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2 Str., 30-387 Cracow, Poland;
| | - Joanna Nowicka-Scheibe
- Department of Organic and Physical Chemistry, Faculty of Chemical Technology and Engineering, West Pomeranian University of Technology, Piastów Ave. 42, 71-065 Szczecin, Poland;
| | - Andrzej Pawlukojć
- Institute of Nuclear Chemistry and Technology, Dorodna 16 Str., 03-195 Warsaw, Poland;
- Frank Laboratory of Neutron Physics, Joint Institute for Nuclear Research, 141-980 Dubna, Russia
| | - Jan K. Maurin
- National Medicines Institute, Chełmska 30/34 Str., 00-725 Warsaw, Poland;
- National Centre for Nuclear Research, Sołtana 7 Str., 05-400 Otwock, Poland
| | - Wojciech Schilf
- Institute of Organic Chemistry Polish Academy of Sciences, Kasprzaka 44, 01-224 Warsaw, Poland;
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Calcium Alginate Beads with Entrapped Iron Oxide Magnetic Nanoparticles Functionalized with Methionine-A Versatile Adsorbent for Arsenic Removal. NANOMATERIALS 2021; 11:nano11051345. [PMID: 34065311 PMCID: PMC8161252 DOI: 10.3390/nano11051345] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 05/13/2021] [Accepted: 05/17/2021] [Indexed: 11/20/2022]
Abstract
A novel beads adsorbent, consisting of calcium alginate entrapped on magnetic nanoparticles functionalized with methionine (MFMNABs), was developed for effective elimination of arsenic from water. The material was characterized by FT-IR (Fourier Transform Infrared Spectroscopy), SEM (Scanning Electron Microscopic), XRD (X-ray Diffraction) and TEM (Transmission Electron Microscopy). The arsenic removal capacity of the material was studied by altering variables such as pH of the solution, contact time, adsorbent dose and adsorbate concentration. The maximal removal of As(III) was 99.56% under optimal conditions with an equilibrium time of 110 min and pH 7.0–7.5. The adsorption followed a second order kinetics and data best fitted the Langmuir isotherm with a correlation coefficient of R2 = 0.9890 and adsorption capacity (qm) of 6.6533 mg/g. The thermodynamic study showed entropy change (∆S) and enthalpy change (∆H) to be 34.32 J mol−1 K and 5.25 kJ mol−1, respectively. This study proved that it was feasible to treat an As(III) solution with MFMNABs. The synthesized adsorbent was cost-effective, environmentally friendly and versatile, compared to other adsorbents. The adsorption study was carried by low cost spectrophotometric method using N- bromosuccinimide and rhodamine-B developed in our laboratory.
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Iglesias-Groth S, Cataldo F. Integrated Molar Absorptivity of Mid- and Far-Infrared Spectra of Glycine and Other Selected Amino Acids. ASTROBIOLOGY 2021; 21:526-540. [PMID: 33956490 DOI: 10.1089/ast.2020.2307] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
A selection of five proteinogenic amino acids-glycine, isoleucine, phenylalanine, tyrosine, and tryptophan-were studied in the mid-infrared and in the far-infrared with the purpose to facilitate the search and identification of these astrobiologically and astrochemically relevant molecules in space environments. The molar extinction coefficients (ɛ) of all mid- and far-infrared bands were determined as well as the integrated molar absorptivities (ψ). The mid-infrared spectra of the five selected amino acids were recorded also at three different temperatures from -180°C to ambient temperature to +200°C. We measured the wavelength shift of the infrared bands caused by temperature; and for the most relevant or temperature-sensitive infrared bands, a series of linear equations were determined relating wavelength position with temperature. Such equations may provide estimates of the temperature of these molecules once detected in astrophysical objects; and with the reported values of ɛ and ψ, it will be possible to estimate the relative abundance of these molecules in space environments.
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50
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Sun F, Wang H, Wang H, Xia X, Kong B. Impacts of pH and temperature on the conformation of a protease from Pediococcus pentosaceus R1 isolated from Harbin dry sausage. Lebensm Wiss Technol 2021. [DOI: 10.1016/j.lwt.2021.111056] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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