1
|
Tziros GT, Samaras A, Karaoglanidis GS. Soil Solarization Efficiently Reduces Fungal Soilborne Pathogen Populations, Promotes Lettuce Plant Growth, and Affects the Soil Bacterial Community. BIOLOGY 2024; 13:624. [PMID: 39194562 DOI: 10.3390/biology13080624] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Revised: 08/08/2024] [Accepted: 08/13/2024] [Indexed: 08/29/2024]
Abstract
Lettuce is the most cultivated leafy vegetable in Greece; however, due to the adopted intensive cropping system, its cultivation is susceptible to many soilborne pathogens that cause significant yield and quality losses. In the current study, the impact of various soil disinfestation methods such as solarization, chemical disinfestation, and application of a biofungicide were evaluated in a commercial field that has been repeatedly used for lettuce cultivation. The populations of soilborne pathogens Rhizoctonia solani, Pythium ultimum, Fusarium oxysporum, and Fusarium equiseti were measured via qPCR before and after the implementation of the specific disinfestation methods. Although all the tested methods significantly reduced the population of the four soilborne pathogens, soil solarization was the most effective one. In addition, solarization reduced the number of lettuce plants affected by the pathogens R. solani and F. equiseti, and at the same time, significantly influenced the growth of lettuce plants. Amplicon sequence analysis of 16S rRNA-encoding genes used to study the soil bacterial community structure showed that Firmicutes, Proteobacteria, and Actinobacteria were the predominant bacterial phyla in soil samples. In general, solarization had positive effects on Firmicutes and negative effects on Proteobacteria and Actinobacteria; soil fumigation with dazomet increased the relative abundance of Firmicutes and Proteobacteria and reduced the corresponding values of Actinobacteria; and biofungicide had no significant effects on the three predominant bacterial phyla. The bacterial community composition and structure varied after the application of the soil disinfestation treatments since they imposed changes in the α- and β-diversity levels. The results of this study are expected to contribute towards implementing the most effective control method against the most common soilborne pathogens in intensively cultivated fields, such as those cultivated with leafy vegetables.
Collapse
Affiliation(s)
- George T Tziros
- Laboratory of Plant Pathology, Forestry and Natural Environment, Faculty of Agriculture, Aristotle University of Thessaloniki, P.O. Box 269, 54124 Thessaloniki, Greece
| | - Anastasios Samaras
- Laboratory of Plant Pathology, Forestry and Natural Environment, Faculty of Agriculture, Aristotle University of Thessaloniki, P.O. Box 269, 54124 Thessaloniki, Greece
| | - George S Karaoglanidis
- Laboratory of Plant Pathology, Forestry and Natural Environment, Faculty of Agriculture, Aristotle University of Thessaloniki, P.O. Box 269, 54124 Thessaloniki, Greece
| |
Collapse
|
2
|
Bai X, Liu K, Ning T, Deng C, Wang L, Li D, Wang T, Li J. Effects of multiple N, P, and K fertilizer combinations on strawberry growth and the microbial community. PLoS One 2023; 18:e0293088. [PMID: 38011252 PMCID: PMC10681299 DOI: 10.1371/journal.pone.0293088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 10/05/2023] [Indexed: 11/29/2023] Open
Abstract
Nitrogen (N), phosphorus (P), and potassium (K) exert various effects on strawberry (Fragaria ananassa Duchesne) yields. In this study, we employed an orthogonal experimental design (T1-T9) with three fertilization treatments (N, P, and K) at three levels to identify an optimal fertilization scheme for strawberry cultivation. The effects of fertilizer combinations the rhizosphere soil microbial community were also explored by using bacterial full-length 16S rRNA and fungal ITS (internal transcribed spacer) sequencing (30 samples for each analysis). The results showed that the average plant height and leaf area of the fertilized groups were 24.6% and 41.6% higher than those of the non-fertilized group (T0). After 60 d of planting, the sucrase activity in the T6 group increased by 76.67% compared to the T0 group, with phosphate fertilizer exerting a more significant impact on sucrase activity. The T6 treatment group had the highest alpha diversity index among bacterial and fungal microorganisms, and had a different microbial community structure compared with the control group. The most abundant bacterial taxa in the strawberry rhizosphere soil were Proteobacteria, Bacteroidota, and Acidobacteriota, and the most abundant fungal phyla were Monoblepharomycota, Glomeromycota, and Mucoromycota. Application of the optimal combined fertilizer treatment (T6) significantly increased the abundance of Proteobacteria and altered the abundance of Gemmatimonas compared to other treatment groups. Notably, Gemmatimonas abundance positively correlated with strawberry plant height and soil N, P, and K levels. These findings indicated that the relative abundance of beneficial bacteria could be enhanced by the application of an optimal fertilizer ratio, ultimately improving strawberry agronomic traits.
Collapse
Affiliation(s)
- Xue Bai
- Engineering Research Center for Urban Modern Agriculture of Higher Education in Yunnan Province, School of Agriculture and Life Sciences, Kunming University, Kunming, China
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of Antibiotics, School of Pharmacy, Chengdu University, Chengdu, China
| | - Kaili Liu
- Engineering Research Center for Urban Modern Agriculture of Higher Education in Yunnan Province, School of Agriculture and Life Sciences, Kunming University, Kunming, China
| | - Tiao Ning
- Engineering Research Center for Urban Modern Agriculture of Higher Education in Yunnan Province, School of Agriculture and Life Sciences, Kunming University, Kunming, China
| | | | - Li Wang
- Xinhui Forestry Science Institute, Jiangmen, China
| | - Diyan Li
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of Antibiotics, School of Pharmacy, Chengdu University, Chengdu, China
| | - Tao Wang
- Antibiotics Research and Re-evaluation Key Laboratory of Sichuan Province, Sichuan Industrial Institute of Antibiotics, School of Pharmacy, Chengdu University, Chengdu, China
| | - Jing Li
- Engineering Research Center for Urban Modern Agriculture of Higher Education in Yunnan Province, School of Agriculture and Life Sciences, Kunming University, Kunming, China
- Shangri-La Zangmei Agricultural Technology Co., Ltd., Diqing, China
- Shangri-La City Small Berry Research and Development Center, Diqing, China
| |
Collapse
|
3
|
Zhou T, Wang F, Tahmasbian I, Ma B, Liu M, Zhang M. Linking Carbendazim Accumulation with Soil and Endophytic Microbial Community Diversities, Compositions, Functions, and Assemblies: Effects of Urea-hydrogen Peroxide and Nitrification Inhibitors. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:17689-17699. [PMID: 37934059 DOI: 10.1021/acs.jafc.3c04777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2023]
Abstract
Fungicide carbendazim accumulation in soils and plants is a wide concern. Nitrogen (N) is a substantial nutrient limiting crop growth and affecting soil microbial activity and the community in degrading fungicides. We investigated the effects of urea-hydrogen peroxide (UHP) and nitrification inhibitors Dicyandiamide (DCD) and 3,4-dimethylpyrazole phosphate (DMPP) on carbendazim accumulation and soil and endophytic microbial communities. The UHP application had negligible influences on soil and plant carbendazim accumulation, but the combined UHP and DCD decreased soil carbendazim accumulation by 5.31% and the combined UHP and DMPP decreased plant carbendazim accumulation by 44.36%. The combined UHP and nitrification inhibitor significantly decreased the ratios of soil Firmicutes and endophytic Ascomycota. Soil microbial community assembly was governed by the stochastic process, while the stochastic and deterministic processes governed the endophyte. Our findings could provide considerable methods to reduce fungicide accumulation in soil-plant systems with agricultural N management strategies.
Collapse
Affiliation(s)
- Tangrong Zhou
- College of Environment and Ecology, Hunan Agricultural University, Changsha 410128, China
| | - Fang Wang
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Iman Tahmasbian
- Department of Agriculture and Fisheries, Queensland Government, Toowoomba, Queensland 4350, Australia
| | - Bin Ma
- College of Environment and Ecology, Hunan Agricultural University, Changsha 410128, China
| | - Mengting Liu
- College of Environment and Ecology, Hunan Agricultural University, Changsha 410128, China
| | - Manyun Zhang
- College of Environment and Ecology, Hunan Agricultural University, Changsha 410128, China
- Centre for Planetary Health and Food Security, School of Environment and Science, Griffith University, Brisbane, Queensland 4111, Australia
| |
Collapse
|
4
|
Wang Y, Zhao X, Omidvar N, Liu M, Zou D, Zhang M. Insight into functional mechanisms of percarbamide and nitrification inhibitors in degrading fungicide residues and shaping microbial communities in soil-plant systems. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 345:118687. [PMID: 37517094 DOI: 10.1016/j.jenvman.2023.118687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 07/03/2023] [Accepted: 07/25/2023] [Indexed: 08/01/2023]
Abstract
Fungicides and nitrogen (N) fertilizers are essential to maintain plant yield in current intensive agriculture. Percarbamide is a novel type of N fertilizer with strong oxidizing property, and the nitrification inhibitor is widely used in agricultural production. It may be feasible to apply percarbamide and nitrification inhibitor as N management to promote fungicide dissipations in soil-plant system. This study quantified the effects of percarbamide and nitrification inhibitor dicyandiamide (DCD) and 3, 4-dimethylpyrazole phosphate (DMPP) on carbendazim residues, and microbial communities of soil-plant systems, and relationships among carbendazim residues, soil and endophytic microbial communities and plant yields were also comprehensively quantified. Compared with the control, the percarbamide significantly reduced soil carbendazim residues by 29.4% but enhanced the lettuce yield by 28.0%. Soil carbendazim residues were significantly and negatively correlated with the soil total N and NO3--N contents. Soil microbial community structures and co-occurrence networks were more sensitive to N management than their endophytic counterparts. In comparison to the percarbamide alone, the DCD significantly increased the nodes of soil fungal community co-occurrence network which were positively correlated with the plant yield. The DCD outweighed DMPP in increasing the lettuce yield and soil fungal community stability and reshaping soil bacterial community structure. Our study suggested that soil microbial communities were more sensitive to percarbamide and nitrification inhibitor applications than their endophytic counterparts under fungicide pressure and that the DCD outweighed DMPP in reshaping microbial communities. The integrated applications of percarbamide and nitrification inhibitors were promising soil N management strategies to promote fungicide removal and stimulate microbial community in the soil-plant systems.
Collapse
Affiliation(s)
- Yan Wang
- College of Environment and Ecology, Hunan Agricultural University, Changsha, 410128, China
| | - Xinlin Zhao
- Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China
| | - Negar Omidvar
- Centre for Planetary Health and Food Security, Griffith University, Nathan, Brisbane, QLD, 4111, Australia
| | - Mengting Liu
- College of Environment and Ecology, Hunan Agricultural University, Changsha, 410128, China
| | - Dongsheng Zou
- College of Environment and Ecology, Hunan Agricultural University, Changsha, 410128, China
| | - Manyun Zhang
- College of Environment and Ecology, Hunan Agricultural University, Changsha, 410128, China; Centre for Planetary Health and Food Security, Griffith University, Nathan, Brisbane, QLD, 4111, Australia.
| |
Collapse
|
5
|
Donoso-Piñol P, Briceño G, Evaristo JAM, Nogueira FCS, Leiva B, Lamilla C, Schalchli H, Diez MC. Metabolic Profiling and Comparative Proteomic Insight in Respect of Amidases during Iprodione Biodegradation. Microorganisms 2023; 11:2367. [PMID: 37894025 PMCID: PMC10608976 DOI: 10.3390/microorganisms11102367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 09/11/2023] [Accepted: 09/18/2023] [Indexed: 10/29/2023] Open
Abstract
The fungicide iprodione (IPR) (3-(3,5-dichlorophenyl) N-isopropyl-2,4-dioxoimidazolidine-1-carboxamide) is a highly toxic compound. Although IPR has been restricted, it is still being applied in many places around the world, constituting an environmental risk. The biodegradation of IPR is an attractive option for reducing its residues. In this study, we isolated thirteen IPR-tolerant bacteria from a biopurification system designed to treat pesticides. A study of biodegradation using different strains was comparatively evaluated, and the best degradation rate of IPR was presented by Achromobacter sp. C1 with a half-life (T1/2) of 9 days. Based on a nano-LC-MS/MS analysis for the strains, proteins solely expressed in the IPR treatment were identified by highlighting the strain Achromobacter sp. C1, with 445 proteins primarily involved in the biosynthesis of secondary metabolites and microbial metabolism in diverse environments. Differentially expressed protein amidases were involved in six metabolic pathways. Interestingly, formamidase was inhibited while other cyclases, i.e., amidase and mandelamide hydrolase, were overexpressed, thereby minimizing the effect of IPR on the metabolism of strain C1. The dynamic changes in the protein profiles of bacteria that degrade IPR have been poorly studied; therefore, our results offer new insight into the metabolism of IPR-degrading microorganisms, with special attention paid to amidases.
Collapse
Affiliation(s)
- Pamela Donoso-Piñol
- Doctoral Program in Science of Natural Resources, University of La Frontera, Temuco 4780000, Chile; (P.D.-P.); (B.L.)
| | - Gabriela Briceño
- Department of Chemistry Science and Natural Resources, University of La Frontera, Temuco 4780000, Chile
- Biotechnological Research Centre Applied to the Environment (CIBAMA-BIOREN), University of La Frontera, Temuco 4780000, Chile; (C.L.); (H.S.)
| | - Joseph A. M. Evaristo
- Laboratory of Proteomics, LADETEC, Institute of Chemistry, Federal University of Rio de Janeiro, Rio de Janeiro 22775-000, Brazil; (J.A.M.E.); (F.C.S.N.)
| | - Fábio C. S. Nogueira
- Laboratory of Proteomics, LADETEC, Institute of Chemistry, Federal University of Rio de Janeiro, Rio de Janeiro 22775-000, Brazil; (J.A.M.E.); (F.C.S.N.)
| | - Barbara Leiva
- Doctoral Program in Science of Natural Resources, University of La Frontera, Temuco 4780000, Chile; (P.D.-P.); (B.L.)
- Biotechnological Research Centre Applied to the Environment (CIBAMA-BIOREN), University of La Frontera, Temuco 4780000, Chile; (C.L.); (H.S.)
| | - Claudio Lamilla
- Biotechnological Research Centre Applied to the Environment (CIBAMA-BIOREN), University of La Frontera, Temuco 4780000, Chile; (C.L.); (H.S.)
| | - Heidi Schalchli
- Biotechnological Research Centre Applied to the Environment (CIBAMA-BIOREN), University of La Frontera, Temuco 4780000, Chile; (C.L.); (H.S.)
| | - María Cristina Diez
- Biotechnological Research Centre Applied to the Environment (CIBAMA-BIOREN), University of La Frontera, Temuco 4780000, Chile; (C.L.); (H.S.)
- Department of Chemical Engineering, University of La Frontera, Temuco 4780000, Chile
| |
Collapse
|
6
|
Ma Z, Feng H, Yang C, Ma X, Li P, Feng Z, Zhang Y, Zhao L, Zhou J, Xu X, Zhu H, Wei F. Integrated microbiology and metabolomics analysis reveal responses of cotton rhizosphere microbiome and metabolite spectrum to conventional seed coating agents. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 333:122058. [PMID: 37330187 DOI: 10.1016/j.envpol.2023.122058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 06/10/2023] [Accepted: 06/14/2023] [Indexed: 06/19/2023]
Abstract
Fludioxonil (FL) and metalaxyl-M·fludioxonil·azoxystrobin (MFA) are conventional seed coating agents for controlling cotton seedling diseases. However, their effects on seed endophytic and rhizosphere microecology are still poorly understood. This study aimed to assess the effects of FL and MFA on cotton seed endophytes, rhizosphere soil enzymatic activities, microbiome and metabolites. Both seed coating agents significantly changed seed endophytic bacterial and fungal communities. Growing coated seeds in the soils originating from the Alar (AL) and Shihezi (SH) region inhibited soil catalase activity and decreased both bacterial and fungal biomass. Seed coating agents increased rhizosphere bacterial alpha diversity for the first 21 days but decreased fungal alpha diversity after day 21 in the AL soil. Seed coating reduced the abundance of a number of beneficial microorganisms but enriched some potential pollutant-degrading microorganisms. Seed coating agents may have affected the complexity of the co-occurrence network of the microbiome in the AL soil, reducing connectivity, opposite to what was observed in the SH soil. MFA had more pronounced effects on soil metabolic activities than FL. Furthermore, there were strong links between soil microbial communities, metabolites and enzymatic activities. These findings provide valuable information for future research and development on application of seed coatings for disease management.
Collapse
Affiliation(s)
- Zheng Ma
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China; Zhengzhou Research Base, National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Zhengzhou University, Zhengzhou, 450001, Henan, China
| | - Hongjie Feng
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China; Zhengzhou Research Base, National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Zhengzhou University, Zhengzhou, 450001, Henan, China; Western Agricultural Research Center, Chinese Academy of Agricultural Sciences, Changji, 831100, Xinjiang, China
| | - Chuanzhen Yang
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Xiaojie Ma
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Peng Li
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China
| | - Zili Feng
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China; Western Agricultural Research Center, Chinese Academy of Agricultural Sciences, Changji, 831100, Xinjiang, China
| | - Yalin Zhang
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China; Western Agricultural Research Center, Chinese Academy of Agricultural Sciences, Changji, 831100, Xinjiang, China
| | - Lihong Zhao
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China; Western Agricultural Research Center, Chinese Academy of Agricultural Sciences, Changji, 831100, Xinjiang, China
| | - Jinglong Zhou
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China; Western Agricultural Research Center, Chinese Academy of Agricultural Sciences, Changji, 831100, Xinjiang, China
| | - Xiangming Xu
- NIAB, East Malling, West Malling, ME19 6BJ, Kent, UK
| | - Heqin Zhu
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China; Zhengzhou Research Base, National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Zhengzhou University, Zhengzhou, 450001, Henan, China; Western Agricultural Research Center, Chinese Academy of Agricultural Sciences, Changji, 831100, Xinjiang, China
| | - Feng Wei
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China; Zhengzhou Research Base, National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Zhengzhou University, Zhengzhou, 450001, Henan, China; Western Agricultural Research Center, Chinese Academy of Agricultural Sciences, Changji, 831100, Xinjiang, China.
| |
Collapse
|
7
|
Wei X, Fu T, He G, Zhong Z, Yang M, Lou F, He T. Types of vegetables shape composition, diversity, and co-occurrence networks of soil bacteria and fungi in karst areas of southwest China. BMC Microbiol 2023; 23:194. [PMID: 37468849 PMCID: PMC10354930 DOI: 10.1186/s12866-023-02929-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Accepted: 07/03/2023] [Indexed: 07/21/2023] Open
Abstract
BACKGROUND Microorganisms are of significant importance in soil. Yet their association with specific vegetable types remains poorly comprehended. This study investigates the composition of bacterial and fungal communities in soil by employing high-throughput sequencing of 16 S rRNA genes and ITS rRNA genes while considering the cultivation of diverse vegetable varieties. RESULTS The findings indicate that the presence of cultivated vegetables influenced the bacterial and fungal communities leading to discernible alterations when compared to uncultivated soil. In particular, the soil of leafy vegetables (such as cabbage and kale) exhibited higher bacterial α-diversity than melon and fruit vegetable (such as cucumber and tomato), while fungal α-diversity showed an inverse pattern. The prevailing bacterial phyla in both leafy vegetable and melon and fruit vegetable soils were Proteobacteria, Acidobacteriota, Actinobacteriota, and Chloroflexi. In leafy vegetable soil, dominant fungal phyla included Ascomycota, Olpidiomycota, Mortierellomycota, and Basidiomycota whereas in melon and fruit vegetable soil. Ascomycota, Mortierellomycota, Basidiomycota, and Rozellomycota held prominence. Notably, the relative abundance of Ascomycota was lower in leafy vegetable soil compared to melon and fruit vegetable soil. Moreover, leafy vegetable soil exhibited a more complex and stable co-occurrence network in comparison to melon and fruit vegetable soil. CONCLUSION The findings enhance our understanding of how cultivated soil bacteria and fungi respond to human disturbance, thereby providing a valuable theoretical basis for soil health in degraded karst areas of southwest China.
Collapse
Affiliation(s)
- Xiaoliao Wei
- College of Agriculture, Guizhou University, Guiyang, 550025, PR China
| | - Tianling Fu
- Institute of New Rural Development, Engineering Key Laboratory for Pollution Control and Resource Reuse Technology of Mountain Livestock Breeding, Guizhou University, Huaxi District, Guiyang City, 550025, Guizhou Province, PR China
| | - Guandi He
- College of Agriculture, Guizhou University, Guiyang, 550025, PR China
| | - Zhuoyan Zhong
- College of Agriculture, Guizhou University, Guiyang, 550025, PR China
| | - Mingfang Yang
- College of Agriculture, Guizhou University, Guiyang, 550025, PR China
| | - Fei Lou
- College of Agriculture, Guizhou University, Guiyang, 550025, PR China
| | - Tengbing He
- College of Agriculture, Guizhou University, Guiyang, 550025, PR China.
- Institute of New Rural Development, Engineering Key Laboratory for Pollution Control and Resource Reuse Technology of Mountain Livestock Breeding, Guizhou University, Huaxi District, Guiyang City, 550025, Guizhou Province, PR China.
| |
Collapse
|
8
|
Fan X, Chen H, Yan G, Ye M, Yin C, Li T, Wakelin SA, Liang Y. Niche Differentiation Among Canonical Nitrifiers and N 2O Reducers Is Linked to Varying Effects of Nitrification Inhibitors DCD and DMPP in Two Arable Soils. MICROBIAL ECOLOGY 2023; 85:1434-1447. [PMID: 35420314 DOI: 10.1007/s00248-022-02006-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Accepted: 03/29/2022] [Indexed: 05/10/2023]
Abstract
The efficacy of nitrification inhibitors (NIs) dicyandiamide (DCD) and 3,4-dimethylpyrazole phosphate (DMPP) varies with soil types. Understanding the microbial mechanisms for this variation may lead to better modelling of NI efficacy and therefore on-farm adoption. This study addressed the response patterns of mineral nitrogen, nitrous oxide (N2O) emission, abundances of N-cycling functional guilds and soil microbiota characteristics, in relation to urea application with or without DCD or DMPP in two arable soils (an alkaline and an acid soil). The inhibition of nitrification rate and N2O emission by NI application occurred by suppressing ammonia-oxidizing bacteria (AOB) abundances and increasing the abundances of nosZI-N2O reducers; however, abundances of ammonia-oxidizing archaea (AOA) were also stimulated with NIs-added in these two arable soils. DMPP generally had stronger inhibition efficiency than DCD, and both NIs' addition decreased Nitrobacter, while increased Nitrospira abundance only in alkaline soil. N2O emissions were positively correlated with AOB and negatively correlated with nosZI in both soils and AOA only in acid soil. Moreover, N2O emissions were also positively correlated with nirK-type denitrifiers in alkaline soil, and clade A comammox in acid soil. Amendment with DCD or DMPP altered soil microbiota community structure, but had minor effect on community composition. These results highlight a crucial role of the niche differentiation among canonical ammonia oxidizers (AOA/AOB), Nitrobacter and Nitrospira, as well as nosZI- and nosZII-N2O reducers in determining the varying efficacies of DCD and DMPP in different arable soils.
Collapse
Affiliation(s)
- Xiaoping Fan
- Ministry of Education Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Hao Chen
- Ministry of Education Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Guochao Yan
- Laboratory for Quality Improvement of Agricultural Products of Zhejiang Province, College of Agriculture and Food Science, Zhejiang Agriculture and Forestry University, Hangzhou, 311300, China
| | - Mujun Ye
- Ministry of Education Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Chang Yin
- Ministry of Education Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Tingqiang Li
- Ministry of Education Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, 310058, China
| | | | - Yongchao Liang
- Ministry of Education Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Sciences, Zhejiang University, Hangzhou, 310058, China.
| |
Collapse
|
9
|
Xiao Z, Hou K, Zhou T, Zhang J, Li B, Du Z, Sun S, Zhu L. Effects of the fungicide trifloxystrobin on the structure and function of soil bacterial community. ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY 2023; 99:104104. [PMID: 36893889 DOI: 10.1016/j.etap.2023.104104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Revised: 03/02/2023] [Accepted: 03/06/2023] [Indexed: 06/18/2023]
Abstract
Trifloxystrobin has been widely applied to prevent fungal diseases because of its high efficiency and desirable safety characteristics. In the present study, the effects of trifloxystrobin on soil microorganisms were integrally investigated. The results showed that trifloxystrobin inhibited urease activity, promoted dehydrogenase activity. Downregulated expressions of the nitrifying gene (amoA), denitrifying genes (nirK and nirS), and carbon fixation gene (cbbL) were also observed. Soil bacterial community structure analysis showed that trifloxystrobin changed the abundance of bacteria genera related to nitrogen and carbon cycle in soil. Through the comprehensive analysis of soil enzymes, functional gene abundance, and soil bacterial community structure, we concluded that trifloxystrobin inhibited both nitrification and denitrification of soil microorganisms, and also diminished the carbon-sequestration ability. Integrated biomarker response analysis showed that dehydrogenase and nifH were the most sensitive indicators of trifloxystrobin exposure. It provides new insights about trifloxystrobin environmental pollution and its influence on soil ecosystem.
Collapse
Affiliation(s)
- Zongyuan Xiao
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, 61 Daizong Road, Taian 271018, China.
| | - Kaixuan Hou
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, 61 Daizong Road, Taian 271018, China.
| | - Tongtong Zhou
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, 61 Daizong Road, Taian 271018, China.
| | - Jingwen Zhang
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, 61 Daizong Road, Taian 271018, China.
| | - Bing Li
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, 61 Daizong Road, Taian 271018, China.
| | - Zhongkun Du
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, 61 Daizong Road, Taian 271018, China.
| | - Shujuan Sun
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, 61 Daizong Road, Taian 271018, China.
| | - Lusheng Zhu
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, 61 Daizong Road, Taian 271018, China
| |
Collapse
|
10
|
Pokharel P, Chang SX. Biochar decreases and nitrification inhibitor increases phosphorus limitation for microbial growth in a wheat-canola rotation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 858:159773. [PMID: 36374728 DOI: 10.1016/j.scitotenv.2022.159773] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 10/22/2022] [Accepted: 10/23/2022] [Indexed: 06/16/2023]
Abstract
Agricultural management practices affect microbial populations and ecoenzymatic activities; however, the effect of these practices on ecological stoichiometry relating the elemental ratio of resources to microbial biomass is poorly understood. In a 2-year field study, we assessed the effects of biochar and nitrapyrin (a commonly used nitrification inhibitor (NI)) on the ecological stoichiometry and microbial nutrient limitation in a wheat (Triticum aestivum L.)-canola (Brassica juncea L.) rotation. This study used a 3 × 2 factorial design that included two treatments: (i) biochar with three levels: no biochar addition (BC0), and biochar added at 10 (BC10) and 20 t ha-1 (BC20), and (ii) NI with two levels: without (NI0) and with NI (NI1). Soil microbial biomass carbon (C), nitrogen (N) and phosphorus (P) were increased by biochar application, regardless of the application rate, but were not affected by NI application. Biochar increased and NI decreased β-1,4-glucosidase, β-1,4-N-acetyl glucosaminidase and acid phosphatase (P < 0.05) with subsequent changes in ecoenzymatic stoichiometry. Ecoenzymatic stoichiometry analysis showed microbial P limitation relative to N in the studied area irrespective of the treatment, with contrasting effects of biochar (decreasing) and NI (increasing) on the vector angle of ecoenzymatic stoichiometry (P = 0.037 and 0.043, respectively). Biochar applied at 20 t ha-1 decreased the threshold elemental ratio of C:P at which microbial growth switches between nutrient and C limitations, suggesting a shift towards C relative to nutrient (P) limitation. This study concludes that biochar produced from manure compost can be useful in increasing microbial growth by alleviating P limitations in a wheat-canola rotation.
Collapse
Affiliation(s)
- Prem Pokharel
- 442 Earth Sciences Building, Department of Renewable Resources, University of Alberta, Edmonton T6G 2E3, Canada.
| | - Scott X Chang
- 442 Earth Sciences Building, Department of Renewable Resources, University of Alberta, Edmonton T6G 2E3, Canada.
| |
Collapse
|
11
|
Shahid M, Khan MS. Ecotoxicological implications of residual pesticides to beneficial soil bacteria: A review. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2022; 188:105272. [PMID: 36464377 DOI: 10.1016/j.pestbp.2022.105272] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Revised: 10/02/2022] [Accepted: 10/23/2022] [Indexed: 06/17/2023]
Abstract
Optimization of crop production in recent times has become essential to fulfil food demands of constantly increasing human populations worldwide. To address this formidable challenge, application of agro-chemicals including synthetic pesticides in intensive farm practices has increased alarmingly. The excessive and indiscriminate application of pesticides to foster food production however, leads to its exorbitant deposition in soils. After accumulation in soils beyond threshold limits, pesticides harmfully affect the abundance, diversity and composition and functions of rhizosphere microbiome. Also, the cost of pesticides and emergence of resistance among insect-pests against pesticides are other reasons that require attention. Due to this, loss in soil nutrient pool cause a substantive reduction in agricultural production which warrant the search for newer environmentally friendly technology for sustainable crop production. Rhizosphere microbes, in this context, play vital roles in detoxifying the polluted environment making soil amenable for cultivation through detoxification of pollutants, rhizoremediation, bioremediation, pesticide degradation, and stress alleviation, leading to yield optimization. The response of soil microorganisms to range of chemical pesticides is variable ranging from unfavourable to the death of beneficial microbes. At cellular and biochemical levels, pesticides destruct the morphology, ultrastructure, viability/cellular permeability, and many biochemical reactions including protein profiles of soil bacteria. Several classes of pesticides also disturb the molecular interaction between crops and their symbionts impeding the overall useful biological processes. The harmful impact of pesticides on soil microbes, however, is poorly researched. In this review, the recent findings related with potential effects of synthetic pesticides on a range of soil microbiota is highlighted. Emphasis is given to find and suggest strategies to minimize the chemical pesticides usage in the real field conditions to preserve the viability of soil beneficial bacteria and soil quality for safe and sustainable crop production even in pesticide contaminated soils.
Collapse
Affiliation(s)
- Mohammad Shahid
- Department of Agricultural Microbiology, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh 202002, Uttar Pradesh, India.
| | - Mohammad Saghir Khan
- Department of Agricultural Microbiology, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh 202002, Uttar Pradesh, India
| |
Collapse
|
12
|
Yang X, Zhang Z, Yuan Y, Wang K, Chen Y, Wang H. Control efficiency of hexaconazole-lentinan against wheat sharp eyespot and wheat crown rot and the associated effects on rhizosphere soil fungal community. Front Microbiol 2022; 13:1014969. [PMID: 36212818 PMCID: PMC9537369 DOI: 10.3389/fmicb.2022.1014969] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Accepted: 09/02/2022] [Indexed: 11/28/2022] Open
Abstract
The use of polysaccharides to induce the systemic immune response of plants for disease resistance has become an effective plant protection measure. Sharp eyespot wheat and crown rot wheat are serious diseases of wheat. In this study, the control effects of hexaconazole and lentinan (LNT) seed dressing of the two wheat diseases were evaluated by field experiments, and the effects of the seed dressing on plant growth, soil enzyme activity, and community diversity in the wheat rhizosphere were discussed. The results showed that the combined seed dressing of hexaconazole at 0.5 a.i. g·100 kg−1 and LNT at 4 a.i. g·100 kg−1 could significantly improve the control effect of the two wheat diseases. The combined treatment of hexaconazole and LNT had little effect on wheat soil enzyme activities. Different seed dressing treatments changed the fungal community structure in the wheat rhizosphere soil, and the combination of LNT and hexaconazole reduced the relative abundance of Rhizoctonia, Cladosporium, Fusarium, Bipolaris, and Gibberella in wheat planting soils. These findings suggested that the combined seed dressing of hexaconazole and LNT could effectively control soilborne diseases of wheat, concurrently could change in rhizosphere fungal community, and reduce in potential soilborne pathogens.
Collapse
Affiliation(s)
- Xiu Yang
- Department of Plant Protection, Shandong Agricultural University, Tai’an, Shandong, China
| | - Zhongxiao Zhang
- Department of Plant Protection, Shandong Agricultural University, Tai’an, Shandong, China
| | - Yazhen Yuan
- Department of Plant Protection, Shandong Agricultural University, Tai’an, Shandong, China
| | - Kaiyun Wang
- Department of Plant Protection, Shandong Agricultural University, Tai’an, Shandong, China
| | - Yuan Chen
- Shandong Laboratory of Advanced Agricultural Sciences at Weifang, Peking University Institute of Advanced Agricultural Sciences, Weifang, Shandong, China
- *Correspondence: Hongyan Wang, ; Yuan Chen,
| | - Hongyan Wang
- Department of Plant Protection, Shandong Agricultural University, Tai’an, Shandong, China
- *Correspondence: Hongyan Wang, ; Yuan Chen,
| |
Collapse
|
13
|
Volova TG, Kiselev EG, Baranovskiy SV, Zhila NO, Prudnikova SV, Shishatskaya EI, Kuzmin AP, Nemtsev IV, Vasiliev AD, Thomas S. Degradable Poly(3-hydroxybutyrate)-The Basis of Slow-Release Fungicide Formulations for Suppressing Potato Pathogens. Polymers (Basel) 2022; 14:3669. [PMID: 36080743 PMCID: PMC9460056 DOI: 10.3390/polym14173669] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 08/26/2022] [Accepted: 08/31/2022] [Indexed: 12/02/2022] Open
Abstract
Three-component slow-release fungicide formulations with different modes of action of the active ingredients for suppressing potato pathogens were constructed for the first time. The difenoconazole, mefenoxam, prothioconazole, and azoxystrobin fungicides were embedded in the degradable polymer P(3HB)/birch wood flour blend and examined using SEM, IR spectroscopy, X-ray analysis, DTA, and DSC. Results showed that no chemical bonds were established between the components and that they were physical mixtures that had a lower degree of crystallinity compared to the initial P(3HB), which suggested different crystallization kinetics in the mixtures. The degradation behavior of the experimental formulations was investigated in laboratory micro-ecosystems with pre-characterized field soil. The slow-release fungicide formulations were prolonged-action forms with a half-life of at least 50-60 d, enabling gradual and sustained delivery of the active ingredients to plants. All slow-release fungicide formulations had a strong inhibitory effect on the most common and harmful potato pathogens (Phytophthorainfestans, Alternarialongipes, Rhizoctoniasolani, and Fusariumsolani).
Collapse
Affiliation(s)
- Tatiana G. Volova
- Basic Department of Biotechnology, School of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodnyi Av., 660041 Krasnoyarsk, Russia
- Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, 50/50 Akademgorodok, 660036 Krasnoyarsk, Russia
| | - Evgeniy G. Kiselev
- Basic Department of Biotechnology, School of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodnyi Av., 660041 Krasnoyarsk, Russia
- Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, 50/50 Akademgorodok, 660036 Krasnoyarsk, Russia
| | - Sergey V. Baranovskiy
- Basic Department of Biotechnology, School of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodnyi Av., 660041 Krasnoyarsk, Russia
| | - Natalia O. Zhila
- Basic Department of Biotechnology, School of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodnyi Av., 660041 Krasnoyarsk, Russia
- Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, 50/50 Akademgorodok, 660036 Krasnoyarsk, Russia
| | - Svetlana V. Prudnikova
- Basic Department of Biotechnology, School of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodnyi Av., 660041 Krasnoyarsk, Russia
| | - Ekaterina I. Shishatskaya
- Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, 50/50 Akademgorodok, 660036 Krasnoyarsk, Russia
- Department of Medical Biology, School of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodnyi Av., 660041 Krasnoyarsk, Russia
| | - Andrey P. Kuzmin
- Basic Department of Chemistry and Technology of Natural Energy Sources and Carbon Materials, School of Petroleum and Gas Engineering, Siberian Federal University, 82 Svobodny Pr., 660041 Krasnoyarsk, Russia
| | - Ivan V. Nemtsev
- Basic Department of Biotechnology, School of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodnyi Av., 660041 Krasnoyarsk, Russia
- L.V. Kirensky Institute of Physics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, 50/38 Akademgorodok, 660036 Krasnoyarsk, Russia
- Federal Research Center, “Krasnoyarsk Science Center of the Siberian Branch of the Russian Academy of Sciences”, 50 Akademgorodok, 660036 Krasnoyarsk, Russia
| | - Aleksander D. Vasiliev
- L.V. Kirensky Institute of Physics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, 50/38 Akademgorodok, 660036 Krasnoyarsk, Russia
- Basic Department of Solid State Physics and Nanotechnology, School of Engineering Physics and Radio Electronics, Siberian Federal University, 26 Kirensky St., 660074 Krasnoyarsk, Russia
| | - Sabu Thomas
- Basic Department of Biotechnology, School of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodnyi Av., 660041 Krasnoyarsk, Russia
- International and Interuniversity Centre for Nano Science and Nano Technology, Mahatma Gandhi University, Kottayam 686560, India
| |
Collapse
|
14
|
Bergsma S, Euverink GJW, Charalampogiannis N, Poulios E, Janssens TKS, Achinas S. Biotechnological and Medical Aspects of Lactic Acid Bacteria Used for Plant Protection: A Comprehensive Review. BIOTECH 2022; 11:biotech11030040. [PMID: 36134914 PMCID: PMC9497054 DOI: 10.3390/biotech11030040] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Revised: 08/22/2022] [Accepted: 08/29/2022] [Indexed: 11/25/2022] Open
Abstract
The use of chemical pesticides in agriculture goes hand in hand with some crucial problems. These problems include environmental deterioration and human health complications. To eliminate the problems accompanying chemical pesticides, biological alternatives should be considered. These developments spark interest in many environmental fields, including agriculture. In this review, antifungal compounds produced by lactic acid bacteria (LABs) are considered. It summarizes the worldwide distribution of pesticides and the effect of pesticides on human health and goes into detail about LAB species, their growth, fermentation, and their antifungal compounds. Additionally, interactions between LABs with mycotoxins and plants are discussed.
Collapse
Affiliation(s)
- Simon Bergsma
- Faculty of Science and Engineering; University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
- Correspondence: (S.B.); (S.A.)
| | - Gerrit Jan Willem Euverink
- Faculty of Science and Engineering; University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | | | - Efthymios Poulios
- 4th Department of Surgery, Attikon University Hospital, Medical School, National and Kapodistrian University of Athens, Rimini 1, Chaidari, 12462 Athens, Greece
| | | | - Spyridon Achinas
- Faculty of Science and Engineering; University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
- Correspondence: (S.B.); (S.A.)
| |
Collapse
|
15
|
Liu H, Shan M, Liu M, Song J, Chen K. Assessment of the eco-toxicological effects in zoxamide polluted soil amended with fertilizers-An indoor evaluation. CHEMOSPHERE 2022; 301:134630. [PMID: 35447215 DOI: 10.1016/j.chemosphere.2022.134630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Revised: 04/10/2022] [Accepted: 04/13/2022] [Indexed: 06/14/2023]
Abstract
Zoxamide is a benzamide fungicide applied to control diseases caused by oomycete fungi. Fertilizers are important agricultural supplies to adjust soil properties and increase nutrition. To investigate the impact of zoxamide and seven fertilizers urea, phosphate fertilizer, potash fertilizer, compound fertilizer, organic fertilizer, vermicompost and soya bean cakes on the soil environment, the enantioselective dissipation characteristics of zoxamide, soil enzyme activities, pH and N, P nutrition changes were comprehensively analyzed in our present study. The enantioseparation method was successfully validated to quantify the zoxamide enantiomers in soil by HPLC using Chiral NQ (2)-RH column. Our results demonstrated that the R-(-)- and S-(+)-zoxamide half dissipated in the range of 10.88-17.81 and 8.05-14.41 days, respectively. S-(+)-zoxamide disappeared faster in soil. The vermicompost accelerated the dissipation rate of S-(+)-zoxamide, while urea, phosphate, organic and vermicompost fertilizer increased the dissipation selectivity. Zoxamide and fertilizers other than urea caused soil acidification during 80 days. Zoxamide was beneficial to soil catalase, instead inhibited soil urease, dehydrogenase activities and available phosphorus content. No significant effects on sucrase activity and available nitrogen content were found by zoxamide. Vermicompost and soya bean cakes had lasting and outstanding performance in efficiently improving soil enzyme activity and N, P nutrition. The comprehensive understanding of the ecological impact induced by chiral pesticide enantiomers and fertilizers on soil is vital to ensure the sustainable development and safety of agricultural production.
Collapse
Affiliation(s)
- Hui Liu
- Department of Plant Protection, College of Agronomy, Northeast Agricultural University, Harbin, 150030, China.
| | - Mei Shan
- Department of Plant Protection, College of Agronomy, Northeast Agricultural University, Harbin, 150030, China.
| | - Mengqi Liu
- Department of Plant Protection, College of Agronomy, Northeast Agricultural University, Harbin, 150030, China.
| | - Jiaqi Song
- Department of Plant Protection, College of Agronomy, Northeast Agricultural University, Harbin, 150030, China.
| | - Kuiyuan Chen
- Department of Plant Protection, College of Agronomy, Northeast Agricultural University, Harbin, 150030, China.
| |
Collapse
|
16
|
Ayiti OE, Babalola OO. Factors Influencing Soil Nitrification Process and the Effect on Environment and Health. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2022. [DOI: 10.3389/fsufs.2022.821994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
To meet the global demand for food, several factors have been deployed by agriculturists to supply plants with nitrogen. These factors have been observed to influence the soil nitrification process. Understanding the aftermath effect on the environment and health would provoke efficient management. We review literature on these factors, their aftermath effect on the environment and suggest strategies for better management. Synthetic fertilizers and chemical nitrification inhibitors are the most emphasized factors that influence the nitrification process. The process ceases when pH is <5.0. The range of temperature suitable for the proliferation of ammonia oxidizing archaea is within 30 to 37oC while that of ammonia oxidizing bacteria is within 16 to 23oC. Some of the influencing factors excessively speed up the rate of the nitrification process. This leads to excess production of nitrate, accumulation of nitrite as a result of decoupling between nitritation process and nitratation process. The inhibition mechanism of chemical nitrification inhibitors either causes a reduction in the nitrifying micro-organisms or impedes the amoA gene's function. The effects on the environment are soil acidification, global warming, and eutrophication. Some of the health effects attributed to the influence are methemoglobinemia, neurotoxicity, phytotoxicity and cancer. Biomagnification of the chemicals along the food chain is also a major concern. The use of well-researched and scientifically formulated organic fertilizers consisting of microbial inoculum, well-treated organic manure and good soil conditioner are eco-friendly. They are encouraged to be used to efficiently manage the process. Urban agriculture could promote food production, but environmental sustainability should be ensured.
Collapse
|
17
|
Liu Q, Zhang H, Chang F, Xie P, Zhang Y, Wu H, Zhang X, Peng W, Liu F. eDNA revealed in situ microbial community changes in response to Trapa japonica in Lake Qionghai and Lake Erhai, southwestern China. CHEMOSPHERE 2022; 288:132605. [PMID: 34678346 DOI: 10.1016/j.chemosphere.2021.132605] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 10/12/2021] [Accepted: 10/16/2021] [Indexed: 06/13/2023]
Abstract
Trapa japonica was observed to have inhibiting effects and could be used as a potential environment-friendly control strategy for cyanobacterial blooms in freshwater. However, the changes and effecting mechanisms in eukaryotic and prokaryotic communities by T. japonica are not yet clear. In this study, the effects of T. japonica on microbial communities were assessed in Lake Qionghai and Lake Erhai by 18S rRNA and 16S rRNA amplicon sequencing, respectively. The results showed that T. japonica can improve biodiversity and change the microbial community structures to varying degrees in both lakes. The alpha diversity indexes of microbial communities (e.g., Shannon, Sobs, Ace and Chao 1) were higher in the water inhabited by T. japonica (TJ group) than the water uninhabited by T. japonica (control) (P < 0.05). The PCoA results suggested that the microbial community compositions differed between the two groups (PERMANOVA P = 0.001). In Lake Qionghai, the relative abundances of dominant taxa and nutrients level showed little differences between the two groups. These may result from the homogenous water condition in Lake Qionghai. While the genera Cyanobium_PCC-6307, the majority of Cyanobacteria, decreased significantly in TJ group than control according to 16S rRNA gene sequencing. In Lake Erhai, environmental variables were distinctly affected by T. japonica, which was found to drive Cryptophyceae to become the main taxa through taxonomic analysis of 18S rRNA. Based on 16S rRNA gene sequencing, T. japonica reduced the relative abundance of Cyanobacteria, such as Planktothrix_NIVA-CYA_15 and Cyanobium_PCC-6307, by enriching cyanobactericidal bacteria and growth-inhibiting bacteria (e.g., Limnohabitans and Flavobacterium) and changing environmental parameters. Our results revealed that T. japonica acts in shaping microbial communities in lakes on the community level, shedding new lights on eutrophication mitigation, one of the most serious global ecological problems we are facing.
Collapse
Affiliation(s)
- Qi Liu
- Institute for Ecological Research and Pollution Control of Plateau Lakes, School of Ecology and Environmental Science, Yunnan University, Kunming, 650504, China
| | - Hucai Zhang
- Institute for Ecological Research and Pollution Control of Plateau Lakes, School of Ecology and Environmental Science, Yunnan University, Kunming, 650504, China; CAS Center for Excellence in Tibetan Plateau Earth Sciences, Chinese Academy of Sciences (CAS), Beijing, 100101, China.
| | - Fengqin Chang
- Institute for Ecological Research and Pollution Control of Plateau Lakes, School of Ecology and Environmental Science, Yunnan University, Kunming, 650504, China
| | - Ping Xie
- Institute for Ecological Research and Pollution Control of Plateau Lakes, School of Ecology and Environmental Science, Yunnan University, Kunming, 650504, China
| | - Yun Zhang
- Institute for Ecological Research and Pollution Control of Plateau Lakes, School of Ecology and Environmental Science, Yunnan University, Kunming, 650504, China
| | - Han Wu
- Institute for Ecological Research and Pollution Control of Plateau Lakes, School of Ecology and Environmental Science, Yunnan University, Kunming, 650504, China
| | - Xiaonan Zhang
- Institute for Ecological Research and Pollution Control of Plateau Lakes, School of Ecology and Environmental Science, Yunnan University, Kunming, 650504, China
| | - Wei Peng
- Institute for Ecological Research and Pollution Control of Plateau Lakes, School of Ecology and Environmental Science, Yunnan University, Kunming, 650504, China
| | - Fengwen Liu
- Institute for Ecological Research and Pollution Control of Plateau Lakes, School of Ecology and Environmental Science, Yunnan University, Kunming, 650504, China
| |
Collapse
|
18
|
Corrochano-Monsalve M, González-Murua C, Estavillo JM, Estonba A, Zarraonaindia I. Impact of dimethylpyrazole-based nitrification inhibitors on soil-borne bacteria. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 792:148374. [PMID: 34153750 DOI: 10.1016/j.scitotenv.2021.148374] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 05/03/2021] [Accepted: 06/03/2021] [Indexed: 05/25/2023]
Abstract
Nitrogen (N) input from fertilizers modifies the properties of agricultural soils as well as bacterial community diversity, composition and relationships. This can lead to negative impacts such as the deterioration of system multifunctionality, whose maintenance is critical to normal nutrient cycling. Synthetic nitrification inhibitors (NIs) can be combined with fertilizers to improve the efficiency of N use by reducing N losses. However, analysis of their effects on non-target bacteria are scarce. This study aimed to analyze the effect of applying the NIs DMPP and DMPSA on the whole bacterial community. Through 16S rRNA amplicon sequencing we determined the differences between samples in terms of microbial diversity, composition and co-occurrence networks. The application of DMPP and DMPSA exerted little impact on the abundance of the dominant phyla. Nevertheless, several significant shifts were detected in bacterial diversity, co-occurrence networks, and the abundance of particular taxa, where soil water content played a key role. For instance, the application of NIs intensified the negative impact of N fertilization on bacterial diversity under high water-filled pore spaces (WFPS) (>64%), reducing community diversity, whereas alpha-diversity was not affected at low WFPS (<55%). Interestingly, despite NIs are known to inhibit ammonia monooxygenase (AMO) enzyme, both NIs almost exclusively inhibited Nitrosomonas genera among AMO holding nitrifiers. Thus, Nitrosomonas showed abundance reductions of up to 47% (DMPP) and 66% (DMPSA). Nonetheless, non-target bacterial abundances also shifted with NI application. Notably, DMPSA application partially alleviated the negative effect of fertilization on soil multifunctionality. A remarkable increase in populations related to system multifunctionality, such as Armatimonadetes (up to +21%), Cyanobacteria (up to +30%) and Fibrobacteres (up to +25%) was observed when DMPSA was applied. NI application substantially influenced microbial associations by decreasing the complexity of co-occurrence networks, decreasing the total edges and node connectivity, and increasing path distances.
Collapse
Affiliation(s)
- Mario Corrochano-Monsalve
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Apdo. 644, E-48080 Bilbao, Spain.
| | - Carmen González-Murua
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Apdo. 644, E-48080 Bilbao, Spain
| | - José-María Estavillo
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Apdo. 644, E-48080 Bilbao, Spain
| | - Andone Estonba
- Department of Genetics, Physical Anthropology & Animal Physiology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Leioa, Spain
| | - Iratxe Zarraonaindia
- Department of Genetics, Physical Anthropology & Animal Physiology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Leioa, Spain; IKERBASQUE, Basque Foundation for Science, Bilbao, Spain
| |
Collapse
|
19
|
Gu Y, Wang J, Cai W, Li G, Mei Y, Yang S. Different Amounts of Nitrogen Fertilizer Applications Alter the Bacterial Diversity and Community Structure in the Rhizosphere Soil of Sugarcane. Front Microbiol 2021; 12:721441. [PMID: 34616383 PMCID: PMC8489880 DOI: 10.3389/fmicb.2021.721441] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Accepted: 08/06/2021] [Indexed: 11/25/2022] Open
Abstract
Sugarcane cropping systems receive elevated application of nitrogen (N) fertilizer for higher production, which may affect production costs and cause environmental pollution. Therefore, it is critical to elucidate the response of soil microbial to N fertilizer inputs in sugarcane soil. A field experiment was carried out to investigate the effects of optimum (N375, 375 kg N/ha) and excessive (N563, 563 kg N/ha) amounts of N fertilizer on soil bacterial diversity and community structure in a sugarcane cropping system by MiSeq high-throughput sequencing; 50,007 operational taxonomic units (OTUs) were obtained by sequencing the 16S rRNA gene amplicons. Results showed that the most abundant phyla in the sugarcane rhizosphere soil were Proteobacteria, Actinobacteria, Acidobacteria, and Planctomycetes, whose ensemble mean accounted for 74.29%. Different amounts of N application indeed change the bacterial diversity and community structures. Excessive application of N fertilizers significantly decreased the pH and increased the available N in soils and unexpectedly obtained a lower yield. Excessive N resulted in a relatively lower bacterial species richness and significantly increased the relative abundance of phyla Proteobacteria, Acidobacteria, and Bacteroidetes and the genera Sphingomonas and Gemmatimonas, while optimum N treatment significantly increased the phylum Actinobacteria and the genera Bacillus and Nitrospira (P < 0.05). N application shifted the N cycle in nitrification, mainly on the Nitrospira, but showed no significant effect on the genera related to nitrogen fixation, methane oxidation, sulfate reduction, and sulfur oxidation (P > 0.05). Overall, the optimum amount of N application might be conducive to beneficial microorganisms, such as Actinobacteria, Nitrospira, and Bacillus and, thus, result in a healthier ecosystem and higher sustainable crop production.
Collapse
Affiliation(s)
- Yan Gu
- Guangdong Provincial Key Laboratory of Crops Genetics and Improvement, Crop Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
| | - Jihua Wang
- Guangdong Provincial Key Laboratory of Crops Genetics and Improvement, Crop Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
| | - Weijun Cai
- Zhanjiang Academy of Agricultural Sciences, Zhanjiang, China
| | - Guoliang Li
- Institute of Agricultural Resources and Environment, Guangdong Academy of Agricultural Sciences, Guangzhou, China
| | - Yu Mei
- Guangdong Provincial Key Laboratory of Crops Genetics and Improvement, Crop Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
| | - Shaohai Yang
- Guangdong Provincial Key Laboratory of Crops Genetics and Improvement, Crop Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
| |
Collapse
|
20
|
Yang H, Zhang Y, Chuang S, Cao W, Ruan Z, Xu X, Jiang J. Bioaugmentation of acetamiprid-contaminated soil with Pigmentiphaga sp. strain D-2 and its effect on the soil microbial community. ECOTOXICOLOGY (LONDON, ENGLAND) 2021; 30:1559-1571. [PMID: 33443714 DOI: 10.1007/s10646-020-02336-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 12/15/2020] [Indexed: 06/12/2023]
Abstract
Bioaugmentation, a strategy based on microbiome engineering, has been proposed for bioremediation of pollutant-contaminated environments. However, the complex microbiome engineering processes for soil bioaugmentation, involving interactions among the exogenous inoculum, soil environment, and indigenous microbial microbiome, remain largely unknown. Acetamiprid is a widely used neonicotinoid insecticide which has caused environmental contaminations. Here, we used an acetamiprid-degrading strain, Pigmentiphaga sp. D-2, as inoculum to investigate the effects of bioaugmentation on the soil microbial community and the process of microbiome reassembly. The bioaugmentation treatment removed 94.8 and 92.5% of acetamiprid within 40 days from soils contaminated with 50 and 200 mg/kg acetamiprid, respectively. A decrease in bacterial richness and diversity was detected in bioaugmentation treatments, which later recovered with the removal of acetamiprid from soil. Moreover, the bioaugmentation treatment significantly influenced the bacterial community structure, whereas application of acetamiprid alone had little influence on the soil microbial community. Furthermore, the bioaugmentation treatment improved the growth of bacteria associated with acetamiprid degradation, and the inoculated and recruited taxa significantly influenced the keystone taxa of the indigenous microbiome, resulting in reassembly of the bacterial community yielding higher acetamiprid-degrading efficiency than that of the indigenous and acetamiprid-treated communities. Our results provide valuable insights into the mechanisms of microbiome engineering for bioaugmentation of acetamiprid-contaminated soils.
Collapse
Affiliation(s)
- Hongxing Yang
- Department of Microbiology, Key Laboratory of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
- College of Resource and Environment, Anhui Science and Technology University, Anhui, 233100, China
| | - Yanlin Zhang
- Department of Microbiology, Key Laboratory of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Shaochuang Chuang
- Department of Microbiology, Key Laboratory of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Weimiao Cao
- Department of Microbiology, Key Laboratory of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Zhepu Ruan
- Department of Microbiology, Key Laboratory of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xihui Xu
- Department of Microbiology, Key Laboratory of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
| | - Jiandong Jiang
- Department of Microbiology, Key Laboratory of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
| |
Collapse
|
21
|
Wang Y, Jin Y, Han P, Hao J, Pan H, Liu J. Impact of Soil Disinfestation on Fungal and Bacterial Communities in Soil With Cucumber Cultivation. Front Microbiol 2021; 12:685111. [PMID: 34489884 PMCID: PMC8417054 DOI: 10.3389/fmicb.2021.685111] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Accepted: 07/16/2021] [Indexed: 11/13/2022] Open
Abstract
Soil treatment with disinfectants has been used for controlling soilborne phytopathogens. Besides suppressing specific pathogens, how these disinfectants impact soil health, especially soil microbial communities, is yet to be systemically determined. The objectives of this study were to examine the effects of three representative disinfectants, including the dazomet fumigant, fenaminosulf fungicide, and kasugamycin antibiotic on chemical properties, enzymatic activities, and microbial communities in soil for cucumber cultivation. Results showed that 14 days after soil treatment with these chemicals, residual content of dazomet and kasugamycin quickly declined in soil and were undetectable, while fenaminosulf residues were found at 0.48 ± 0.01 mg/kg. Total nitrogen and total carbon increased in soil after dazomet treatment. Urease and sucrase activities were significantly restrained after disinfectant application. The disinfectants did not significantly change the taxon of predominant bacteria and fungi but altered the relative abundance and diversity of soil microbiome, as well as microbial interspecific relationships. Moreover, cucumber cultivation enhanced the overall soil microbial diversity and enzymatic activities, which diminished the difference of soil microbiome among four treatments. The difference in soil microbial diversity among the four treatments became smaller after planting cucumber. Thus, soil microbial communities were affected by soil disinfectants and gradually recovered by cucumber application.
Collapse
Affiliation(s)
- Yan Wang
- College of Plant Science, Jilin University, Changchun, China
| | - Yujie Jin
- College of Plant Science, Jilin University, Changchun, China
| | - Ping Han
- Beijing Research Center for Agricultural Standards and Testing, Beijing Academy of Agriculture and Forestry Science, Beijing, China
| | - Jianjun Hao
- School of Food and Agriculture, The University of Maine, Orono, ME, United States
| | - Hongyu Pan
- College of Plant Science, Jilin University, Changchun, China
| | - Jinliang Liu
- College of Plant Science, Jilin University, Changchun, China
| |
Collapse
|
22
|
Ezazi R, Ahmadzadeh M, Majidian S, Stefani E, Pindo M, Donati C. Responses of cucumber (Cucumis sativus L.) rhizosphere microbial community to some agronomic management practices. FEMS Microbiol Ecol 2021; 97:6325168. [PMID: 34289042 DOI: 10.1093/femsec/fiab107] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Accepted: 07/19/2021] [Indexed: 11/14/2022] Open
Abstract
The microbial communities associated to the rhizosphere (the rhizomicrobiome) have a substantial impact on plant growth and yield. Understanding the effects of agricultural management on the rhizomicrobiome is very important for selecting efficient practices. By sequencing the V4 region of 16S rRNA for bacteria and the ITS1 regions and fungi, we investigated the influences of agronomic practices, including cucumber grafting on cucurbit hybrid (Cucurbita moschata × C. maxima), cucumber-garlic intercropping, and treatment with fungicide iprodione-carbendazim on cucumber rhizosphere microbial communities during plant growth. Soil dehydrogenase activity (DHA) and plant vegetative parameters were assessed as an indicator of overall soil microbial activity. We found that both treatments and growth stage induced significant shifts in microbial community structure. Grafting had the highest number of differentially abundant OTUs compared to control samples, followed by intercropping and fungicide treatment, while plant development stage affected both alpha and beta diversities indices and composition of the rhizomicrobiome. DHA was more dependent on plant growth stages than on treatments. Among the assessed factors, grafting and plant developmental stage resulted in the greatest changes in the microbial community composition. Grafting also increased the plant growth parameters, suggesting that this method should be further investigated in vegetable production systems.
Collapse
Affiliation(s)
- Robab Ezazi
- Department of Plant Protection, College of Agriculture and Natural Resources, University of Tehran, Daneshkadeh Ave., Karaj, Iran, Postal code: 31587-77871
| | - Masoud Ahmadzadeh
- Department of Plant Protection, College of Agriculture and Natural Resources, University of Tehran, Daneshkadeh Ave., Karaj, Iran, Postal code: 31587-77871
| | - Sina Majidian
- School of Electrical Engineering, Iran university of science and technology, Narmak, Hengam street, Tehran, Iran, Postal code: 16846-13114
| | - Erika Stefani
- Unit of Computational Biology, Research and Innovation Centre, Fondazione Edmund Mach, Via Mach 1, 38010 San Michele all'Adige (TN) - Italy
| | - Massimo Pindo
- Unit of Computational Biology, Research and Innovation Centre, Fondazione Edmund Mach, Via Mach 1, 38010 San Michele all'Adige (TN) - Italy
| | - Claudio Donati
- Unit of Computational Biology, Research and Innovation Centre, Fondazione Edmund Mach, Via Mach 1, 38010 San Michele all'Adige (TN) - Italy
| |
Collapse
|
23
|
Zhang C, Wu X, Wu Y, Li J, An H, Zhang T. Enhancement of dicarboximide fungicide degradation by two bacterial cocultures of Providencia stuartii JD and Brevundimonas naejangsanensis J3. JOURNAL OF HAZARDOUS MATERIALS 2021; 403:123888. [PMID: 33264954 DOI: 10.1016/j.jhazmat.2020.123888] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Revised: 08/13/2020] [Accepted: 08/22/2020] [Indexed: 06/12/2023]
Abstract
Bioremediation is commonly conducted by microbial consortia rather than individual species in natural environments. Biodegradation of dicarboximide fungicides in brunisolic soil were significantly enhanced by two bacterial cocultures of Providencia stuartii JD and Brevundimonas naejangsanensis J3. The cocultures degraded 98.42 %, 95.44 %, and 96.81 % of 50 mg/L dimethachlon, iprodione, and procymidone in liquid culture within 6 d respectively, whose efficiency was 1.23 and 1.26, 1.25 and 1.23, and 1.24 and 1.24 times of strains JD and J3, respectively. The cocultures could effectively degrade dimethachlon, iprodione and procymidone to simple products. Moreover, the cocultures immobilized in a charcoal-alginate-chitosan carrier obviously surpassed free cocultures in terms of degradability, stability and reusability. In the field brunisolic soils treated by immobilized cocultures, 96.74 % of 20.25 kg a.i./ha dimethachlon, 95.02 % of 7.50 kg a.i./ha iprodione and 96.27 % of 7.50 kg a.i./ha procymidone were degraded after 7 d, respectively. Moreover, the lower half-lifes (1.53, 1.59 and 1.57 d) by immobilized cocultures were observed, as compared to free cocultures (3.60, 4.03 and 3.92 d) and natural dissipation (21.33, 20.51 and 20.09 d). This study highlights that strains JD and J3 have significant synergetic degradation advantages in rapid bioremediation of dicarboximide fungicide contamination sites.
Collapse
Affiliation(s)
- Cheng Zhang
- Key Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, College of Agricultural Engineering, Jiangsu University, Zhenjiang, Jiangsu, 212013, China; Department of Plant Protection, Institute of Crop Protection, Research Center for Engineering Technology of Kiwifruit, Guizhou Engineering Research Center of Fruit Crops, College of Agriculture, Guizhou University, Guiyang, Guizhou, 550025, China; State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, Guiyang, Guizhou, 550081, China
| | - Xiaomao Wu
- Department of Plant Protection, Institute of Crop Protection, Research Center for Engineering Technology of Kiwifruit, Guizhou Engineering Research Center of Fruit Crops, College of Agriculture, Guizhou University, Guiyang, Guizhou, 550025, China.
| | - Yanyou Wu
- Key Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, College of Agricultural Engineering, Jiangsu University, Zhenjiang, Jiangsu, 212013, China; State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, Guiyang, Guizhou, 550081, China.
| | - Jiaohong Li
- Department of Plant Protection, Institute of Crop Protection, Research Center for Engineering Technology of Kiwifruit, Guizhou Engineering Research Center of Fruit Crops, College of Agriculture, Guizhou University, Guiyang, Guizhou, 550025, China
| | - Huaming An
- Department of Plant Protection, Institute of Crop Protection, Research Center for Engineering Technology of Kiwifruit, Guizhou Engineering Research Center of Fruit Crops, College of Agriculture, Guizhou University, Guiyang, Guizhou, 550025, China
| | - Tao Zhang
- Key Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, College of Agricultural Engineering, Jiangsu University, Zhenjiang, Jiangsu, 212013, China
| |
Collapse
|
24
|
Prudnikova S, Streltsova N, Volova T. The effect of the pesticide delivery method on the microbial community of field soil. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:8681-8697. [PMID: 33064277 DOI: 10.1007/s11356-020-11228-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2020] [Accepted: 10/11/2020] [Indexed: 05/26/2023]
Abstract
The study deals with the effects of herbicides (metribuzin, tribenuron-methyl, fenoxaprop-P-ethyl) and fungicides (tebuconazole, epoxiconazole, azoxystrobin) applied to soil as free pesticides or as slow release formulations embedded in a biodegradable composite matrix on the structure of the soil microbial community. The matrix consisted of a natural biopolymer poly-3-hydroxybutyrate [P(3HB)] and a filler-one of the natural materials (peat, clay, and wood flour). The soil microbial community was characterized, including the major eco-trophic groups of bacteria, dominant taxa of bacteria and fungi, and primary P(3HB)-degrading microorganisms, such as Pseudomonas, Bacillus, Pseudarthrobacter, Streptomyces, Penicillium, and Talaromyces. The addition of free pesticides adversely affected the abundance of soil microorganisms; the decrease varied from 1.4 to 56.0 times for different types of pesticides. The slow release pesticide formulations, in contrast to the free pesticides, exerted a much weaker effect on soil microorganisms, no significant inhibition in the abundance of saprotrophic bacteria was observed, partly due to the positive effects of the composite matrix (polymer/natural material), which was a supplementary substrate for microorganisms. The slow release fungicide formulations, like the free fungicides, reduced the total abundance of fungi and inhibited the development of the phytopathogens Fusarium and Alternaria. Thus, slow release formulations of pesticides preserve the bioremediation potential of soil microorganisms, which are the main factor of removing xenobiotics from the biosphere.
Collapse
Affiliation(s)
| | | | - Tatiana Volova
- Siberian Federal University, 79 Svobodny pr, Krasnoyarsk, 660041, Russia
- Institute of Biophysics SB RAS, Federal Research Center "Krasnoyarsk Science Center SB RAS", 50/50 Akademgorodok, Krasnoyarsk, 660036, Russia
| |
Collapse
|
25
|
Katsoula A, Vasileiadis S, Sapountzi M, Karpouzas DG. The response of soil and phyllosphere microbial communities to repeated application of the fungicide iprodione: accelerated biodegradation or toxicity? FEMS Microbiol Ecol 2020; 96:5813261. [PMID: 32221586 DOI: 10.1093/femsec/fiaa056] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2019] [Accepted: 03/23/2020] [Indexed: 12/30/2022] Open
Abstract
Pesticides interact with microorganisms in various ways with the outcome being negative or positive for the soil microbiota. Pesticides' effects on soil microorganisms have been studied extensively in soil but not in other pesticides-exposed microbial habitats like the phyllosphere. We tested the hypothesis that soil and phyllosphere support distinct microbial communities, but exhibit a similar response (accelerated biodegradation or toxicity) to repeated exposure to the fungicide iprodione. Pepper plants received four repeated foliage or soil applications of iprodione, which accelerated its degradation in soil (DT50_1st = 1.23 and DT50_4th = 0.48 days) and on plant leaves (DT50_1st > 365 and DT50_4th = 5.95 days). The composition of the epiphytic and soil bacterial and fungal communities, determined by amplicon sequencing, was significantly altered by iprodione. The archaeal epiphytic and soil communities responded differently; the former showed no response to iprodione. Three iprodione-degrading Paenarthrobacter strains were isolated from soil and phyllosphere. They hydrolyzed iprodione to 3,5-dichloraniline via the formation of 3,5-dichlorophenyl-carboxiamide and 3,5-dichlorophenylurea-acetate, a pathway shared by other soil-derived arthrobacters implying a phylogenetic specialization in iprodione biotransformation. Our results suggest that iprodione-repeated application could affect soil and epiphytic microbial communities with implications for the homeostasis of the plant-soil system and agricultural production.
Collapse
Affiliation(s)
- A Katsoula
- Laboratory of Plant and Environmental Biotechnology, Department of Biochemistry and Biotechnology, University of Thessaly, Viopolis 41500, Larissa, Greece
| | - S Vasileiadis
- Laboratory of Plant and Environmental Biotechnology, Department of Biochemistry and Biotechnology, University of Thessaly, Viopolis 41500, Larissa, Greece
| | - M Sapountzi
- Laboratory of Plant and Environmental Biotechnology, Department of Biochemistry and Biotechnology, University of Thessaly, Viopolis 41500, Larissa, Greece
| | - Dimitrios G Karpouzas
- Laboratory of Plant and Environmental Biotechnology, Department of Biochemistry and Biotechnology, University of Thessaly, Viopolis 41500, Larissa, Greece
| |
Collapse
|
26
|
Khan S, Shahid M, Khan MS, Syed A, Bahkali AH, Elgorban AM, Pichtel J. Fungicide-Tolerant Plant Growth-Promoting Rhizobacteria Mitigate Physiological Disruption of White Radish Caused by Fungicides Used in the Field Cultivation. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:E7251. [PMID: 33020389 PMCID: PMC7579310 DOI: 10.3390/ijerph17197251] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/21/2020] [Revised: 09/29/2020] [Accepted: 09/30/2020] [Indexed: 12/20/2022]
Abstract
Excessive use of fungicides in agriculture may result in substantial accumulation of active residues in soil, which affect crop health and yield. We investigated the response of Raphanus sativus (white radish) to fungicides in soil and potential beneficial interactions of radish plants with fungicide-tolerant plant growth-promoting rhizobacteria (PGPR). The PGPR were isolated from cabbage and mustard rhizospheres. Morphological and biochemical characteristics measured using standard methods, together with analysis of partial 16S rRNA gene sequences, revealed that fungicide-tolerant PGPR, isolates PS3 and AZ2, were closely related to Pseudomonas spp. These PGPR survived in the presence of high fungicide concentrations i.e., up to 2400 μg mL-1 carbendazim (CBZM) and 3200 μg mL-1 hexaconazole (HEXA). Bacterial isolates produced plant growth stimulants even under fungicide stress, though fungicides induced surface morphological distortion and alteration in membrane permeability of these bacteria, which was proved by a set of microscopic observations. Fungicides considerably affected the germination efficiency, growth, and physiological development of R. sativus, but these effects were relieved when inoculated with PGPR isolates. For instance, CBZM at 1500 mg kg-1 decreased whole dry biomass by 71%, whole plant length by 54%, total chlorophyll by 50%, protein content by 61%, and carotenoid production by 29%. After applying isolate AZ2 for white radish grown in CBZM (10 mg kg-1)-amended soil, it could improve plant growth and development with increased whole plant dry weight (10%), entire plant length (13%) and total chlorophyll content (18%). Similarly, isolate PS3 enhanced plant survival by relieving plant stress with declined biomarkers, i.e., proline (12%), malondialdehyde (3%), ascorbate peroxidase (6.5%), catalase (18%), and glutathione reductase (4%). Application of isolates AZ2 and PS3 could be effective for remediation of fungicide-contaminated soil and for improving the cultivation of radish plants while minimizing inputs of fungicides.
Collapse
Affiliation(s)
- Sadaf Khan
- Department of Agricultural Microbiology, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh 202002, India; (S.K.); (M.S.K.)
| | - Mohammad Shahid
- Department of Agricultural Microbiology, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh 202002, India; (S.K.); (M.S.K.)
| | - Mohammad Saghir Khan
- Department of Agricultural Microbiology, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh 202002, India; (S.K.); (M.S.K.)
| | - Asad Syed
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. 2455, Riyadh 11451, Saudi Arabia; (A.S.); (A.H.B.); (A.M.E.)
| | - Ali H. Bahkali
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. 2455, Riyadh 11451, Saudi Arabia; (A.S.); (A.H.B.); (A.M.E.)
| | - Abdallah M. Elgorban
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. 2455, Riyadh 11451, Saudi Arabia; (A.S.); (A.H.B.); (A.M.E.)
| | - John Pichtel
- Natural Resources and Environmental Management, Ball State University, Muncie, IN 47306, USA;
| |
Collapse
|
27
|
Huang B, Yan D, Ouyang C, Zhang D, Zhu J, Liu J, Li Y, Wang Q, Han Q, Cao A. Chloropicrin fumigation alters the soil phosphorus and the composition of the encoding alkaline phosphatase PhoD gene microbial community. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 711:135080. [PMID: 31818557 DOI: 10.1016/j.scitotenv.2019.135080] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Revised: 10/18/2019] [Accepted: 10/18/2019] [Indexed: 06/10/2023]
Abstract
The transformation of phosphorus (P) compounds in soil depends largely on soil microbial communities and is sensitive to agricultural practices. However, the effects of soil fumigation on soil P, and microbes involved in P transformation, are unknown. Our results showed that chloropicrin (CP) fumigation significantly increased the available-P, Leached-P and active-P fractionation (inorganic P extracted from H2O, NaHCO3 and NaOH) in Shangdong and Miyun soils in the early stages of culture, while soil alkaline phosphatase (ALP) activity and phoD gene abundance decreased significantly. Leached-P in fumigated soil was positively correlated with increased active-P fractionation, indicating that it was an important source of soil Leached-P after fumigation. The changes in P-fractionation, Leached-P and ALP after fumigation were also significantly correlated with the composition of the microbial communities. CP fumigation briefly stimulated an increase in the abundance and diversity of phoD-harboring microbial communities and promoted the mineralization process of soil P. PICRUSt metagenomic analysis showed an increase in the relative abundance of microorganisms with involved in carbohydrate/lipid transport and metabolism functions after fumigation. These results suggest CP fumigation altered soil P transformation and phoD-harboring microbes that might lead to an increased risk of P enrichment in waterways.
Collapse
Affiliation(s)
- Bin Huang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Dongdong Yan
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; Beijing Innovation Consortium of Agriculture Research System, Beijing 100193, China
| | - Canbin Ouyang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; Beijing Innovation Consortium of Agriculture Research System, Beijing 100193, China
| | - Daqi Zhang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Jiahong Zhu
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Jie Liu
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Yuan Li
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; Beijing Innovation Consortium of Agriculture Research System, Beijing 100193, China
| | - Qiuxia Wang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; Beijing Innovation Consortium of Agriculture Research System, Beijing 100193, China
| | - Qingli Han
- College of Biodiversity Conservation, Southwest Forestry University, Kunming 650224, China
| | - Aocheng Cao
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; Beijing Innovation Consortium of Agriculture Research System, Beijing 100193, China.
| |
Collapse
|
28
|
Li X, Lu S, Liu S, Zheng Q, Shen P, Wang X. Shifts of bacterial community and molecular ecological network at the presence of fluoroquinolones in a constructed wetland system. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 708:135156. [PMID: 31780166 DOI: 10.1016/j.scitotenv.2019.135156] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2019] [Revised: 10/11/2019] [Accepted: 10/22/2019] [Indexed: 06/10/2023]
Abstract
Fluoroquinolones (FQs) has caused increasing concerns regarding its potential environmental risks. However, their effects on bacterial community and microbial interactions in wetland system remains unclear. To verify these issues, a lab-scale constructed wetland exposed to low concentration FQs mixture was carried out for two months. The results showed that the removal efficiencies of COD and TP were negatively affected. FQs significantly increased the bacterial diversity and altered the overall bacterial community structure. Proteobacteria significantly decreased while Firmicutes exhibited opposite tendency (P < 0.05). Dechloromonas and Delftia, involved in phosphorus removal, decreased significantly (P < 0.05). Molecular ecological network analysis suggested that FQs promoted the network complexity and microbial interactions. A super module emerged at FQs and among-module connections were weakened obviously. Additionally, Nodes of Betaproteobacteria lost most interactions while Clostridia acquired more interactions at the presence of FQs. This study provided insights into how the bacterial community and their molecular ecological network respond to FQs in constructed wetland system.
Collapse
Affiliation(s)
- Xinhui Li
- Beijing Engineering Research Center of Environmental Material for Water Purification, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Shaoyong Lu
- State Environmental Protection Scientific Observation and Research Station for Lake Dongtinghu (SEPSORSLD), National Engineering Laboratory for Lake Pollution Control and Ecological Restoration, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Shidi Liu
- Beijing Engineering Research Center of Environmental Material for Water Purification, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Quan Zheng
- Beijing Engineering Research Center of Environmental Material for Water Purification, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Peng Shen
- Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Xiaohui Wang
- Beijing Engineering Research Center of Environmental Material for Water Purification, College of Chemical Engineering, Beijing University of Chemical Technology, Beijing 100029, China.
| |
Collapse
|
29
|
Tayyab S, Min LH, Kabir MZ, Kandandapani S, Ridzwan NFW, Mohamad SB. Exploring the interaction mechanism of a dicarboxamide fungicide, iprodione with bovine serum albumin. CHEMICAL PAPERS 2019. [DOI: 10.1007/s11696-019-01015-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
|
30
|
Volova T, Prudnikova S, Boyandin A, Zhila N, Kiselev E, Shumilova A, Baranovskiy S, Demidenko A, Shishatskaya E, Thomas S. Constructing Slow-Release Fungicide Formulations Based on Poly(3-hydroxybutyrate) and Natural Materials as a Degradable Matrix. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:9220-9231. [PMID: 31347838 DOI: 10.1021/acs.jafc.9b01634] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Slow-release fungicide formulations (azoxystrobin, epoxiconazole, and tebuconazole) shaped as pellets and granules in a matrix of biodegradable poly(3-hydroxybutyrate) and natural fillers (clay, wood flour, and peat) were constructed. Infrared spectroscopy showed no formation of chemical bonds between components in the experimental formulations. The formulations of pesticides had antifungal activity against Fusarium verticillioides in vitro. A study of biodegradation of the experimental fungicide formulations in the soil showed that the degradation process was mainly influenced by the type of formulation without significant influence of the type of filler. More active destruction of the granules led to a more rapid accumulation of fungicides in the soil. The content of fungicides present in the soil as a result of degradation of the formulations and fungicide release was determined by their solubility. Thus, all formulations are able to function in the soil for a long time, ensuring gradual and sustained delivery of fungicides.
Collapse
Affiliation(s)
- Tatiana Volova
- Siberian Federal University , 79 Svobodnyi Avenue , Krasnoyarsk 660041 , Russia
- Institute of Biophysics Siberian Branch of the Russian Academy of Sciences (SB RAS) , Federal Research Center "Krasnoyarsk Science Center SB RAS" , 50/50 Akademgorodok , Krasnoyarsk 660036 , Russia
| | - Svetlana Prudnikova
- Siberian Federal University , 79 Svobodnyi Avenue , Krasnoyarsk 660041 , Russia
| | - Anatoly Boyandin
- Siberian Federal University , 79 Svobodnyi Avenue , Krasnoyarsk 660041 , Russia
- Institute of Biophysics Siberian Branch of the Russian Academy of Sciences (SB RAS) , Federal Research Center "Krasnoyarsk Science Center SB RAS" , 50/50 Akademgorodok , Krasnoyarsk 660036 , Russia
| | - Natalia Zhila
- Siberian Federal University , 79 Svobodnyi Avenue , Krasnoyarsk 660041 , Russia
- Institute of Biophysics Siberian Branch of the Russian Academy of Sciences (SB RAS) , Federal Research Center "Krasnoyarsk Science Center SB RAS" , 50/50 Akademgorodok , Krasnoyarsk 660036 , Russia
| | - Evgeniy Kiselev
- Siberian Federal University , 79 Svobodnyi Avenue , Krasnoyarsk 660041 , Russia
- Institute of Biophysics Siberian Branch of the Russian Academy of Sciences (SB RAS) , Federal Research Center "Krasnoyarsk Science Center SB RAS" , 50/50 Akademgorodok , Krasnoyarsk 660036 , Russia
| | - Anna Shumilova
- Siberian Federal University , 79 Svobodnyi Avenue , Krasnoyarsk 660041 , Russia
| | - Sergey Baranovskiy
- Siberian Federal University , 79 Svobodnyi Avenue , Krasnoyarsk 660041 , Russia
| | - Aleksey Demidenko
- Siberian Federal University , 79 Svobodnyi Avenue , Krasnoyarsk 660041 , Russia
- Institute of Biophysics Siberian Branch of the Russian Academy of Sciences (SB RAS) , Federal Research Center "Krasnoyarsk Science Center SB RAS" , 50/50 Akademgorodok , Krasnoyarsk 660036 , Russia
| | - Ekaterina Shishatskaya
- Siberian Federal University , 79 Svobodnyi Avenue , Krasnoyarsk 660041 , Russia
- Institute of Biophysics Siberian Branch of the Russian Academy of Sciences (SB RAS) , Federal Research Center "Krasnoyarsk Science Center SB RAS" , 50/50 Akademgorodok , Krasnoyarsk 660036 , Russia
| | - Sabu Thomas
- Siberian Federal University , 79 Svobodnyi Avenue , Krasnoyarsk 660041 , Russia
- International and Inter University Centre for Nanoscience and Nanotechnology , Mahatma Gandhi University , Priyadarshini Hills, Kottayam , Kerala 686560 , India
| |
Collapse
|
31
|
Luo P, Chen X, Xiao J, Zhao Y, Wang Z. Rapid detection of iprodione in cucumber and apple using an immunochromatographic strip test. FOOD AGR IMMUNOL 2019. [DOI: 10.1080/09540105.2019.1625309] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Affiliation(s)
- Pengjie Luo
- NHC Key Laboratory of Food Safety Risk Assessment, China National Center for Food Safety Risk Assessment, Beijing, People’s Republic of China
| | - Xia Chen
- State Key Laboratory for infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People’s Republic of China
| | - Jing Xiao
- NHC Key Laboratory of Food Safety Risk Assessment, China National Center for Food Safety Risk Assessment, Beijing, People’s Republic of China
| | - Yunfeng Zhao
- NHC Key Laboratory of Food Safety Risk Assessment, China National Center for Food Safety Risk Assessment, Beijing, People’s Republic of China
| | - Zifei Wang
- NHC Key Laboratory of Food Safety Risk Assessment, China National Center for Food Safety Risk Assessment, Beijing, People’s Republic of China
| |
Collapse
|
32
|
Choudhary P, Chakdar H, Singh A, Kumar S, Singh SK, Aarthy M, Goswami SK, Srivastava AK, Saxena AK. Computational identification and antifungal bioassay reveals phytosterols as potential inhibitor of Alternaria arborescens. J Biomol Struct Dyn 2019; 38:1143-1157. [PMID: 30898083 DOI: 10.1080/07391102.2019.1597767] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
Alternaria arborescens is a major pathogen for crops like tomato, tangerine and so on and its control is mostly dependent on the application of chemical agents. Plants as the sources of natural products are very attractive option for developing eco-friendly and natural antifungal agents. In this study, we modeled three-dimensional structure of chorismate synthase (CS) enzyme from A. arborescens. Docking studies of phytosterols, namely, γ-sitosterol and β-sitosterol, with CS showed them to be potential inhibitor of CS. To explore the stability and conformational flexibility of all the AaCS complex systems, molecular dynamics simulations were performed. None of the putative inhibitors as well as β- and γ-sitosterol showed interaction with the FMNH2 binding pocket of the tomato CS (major host of A. arborescens) indicating their suitability as antifungal compounds inhibiting the shikimate pathway without causing any harm to the host. An in vivo antifungal bioassay showed a significant reduction in fungal growth in the presence of β-sitosterol (500 ppm) which resulted in ∼23% and ∼17% reduction in fungal fresh and dry weight, respectively, at 8 days after inoculation. This study provides experimental evidence establishing natural sterols like β-sitosterol can be useful in curbing A. arborescens damage in an eco-friendly manner.Communicated by Ramaswamy H. Sarma.
Collapse
Affiliation(s)
- Prassan Choudhary
- Microbial Technology Unit, ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, Uttar Pradesh, India
| | - Hillol Chakdar
- Microbial Technology Unit, ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, Uttar Pradesh, India
| | - Arjun Singh
- Microbial Technology Unit, ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, Uttar Pradesh, India
| | - Sunil Kumar
- Microbial Technology Unit, ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, Uttar Pradesh, India
| | - Sanjeev Kumar Singh
- Department of Bioinformatics, Algappa University, Karaikudi, Tamil Nadu, India
| | - Murali Aarthy
- Department of Bioinformatics, Algappa University, Karaikudi, Tamil Nadu, India
| | - Sanjay Kumar Goswami
- Microbial Technology Unit, ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, Uttar Pradesh, India
| | - Alok Kumar Srivastava
- Microbial Technology Unit, ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, Uttar Pradesh, India
| | - Anil Kumar Saxena
- Microbial Technology Unit, ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, Uttar Pradesh, India
| |
Collapse
|
33
|
Hu D, Zhang S, Baskin JM, Baskin CC, Wang Z, Liu R, Du J, Yang X, Huang Z. Seed mucilage interacts with soil microbial community and physiochemical processes to affect seedling emergence on desert sand dunes. PLANT, CELL & ENVIRONMENT 2019; 42:591-605. [PMID: 30193400 DOI: 10.1111/pce.13442] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2018] [Revised: 08/31/2018] [Accepted: 09/03/2018] [Indexed: 06/08/2023]
Abstract
Seedling emergence is a critical stage in the establishment of desert plants. Soil microbes participate in plant growth and development, but information is lacking with regard to the role of microbes on seedling emergence. We applied the biocides (captan and streptomycin) to assess how seed mucilage interacts with soil microbial community and physiochemical processes to affect seedling emergence of Artemisia sphaerocephala on the desert sand dune. Fungal and bacterial community composition and diversity and fungal-bacterial interactions were changed by both captan and streptomycin. Mucilage increased soil enzyme activities and fungal-bacterial interactions. Highest seedling emergence occurred under streptomycin and mucilage treatment. Members of the phyla Firmicutes and Glomeromycota were the keystone species that improved A. sphaerocephala seedling emergence, by increasing resistance of young seedlings to drought and pathogen. Seed mucilage directly improved seedling emergence and indirectly interacted with the soil microbial community through strengthening fungal-bacterial interactions and providing favourable environment for soil enzymes to affect seedling emergence. Our study provides a comprehensive understanding of the regulatory mechanisms by which soil microbial community and seed mucilage interactively promote successful establishment of populations of desert plants on the barren and stressful sand dune.
Collapse
Affiliation(s)
- Dandan Hu
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Shudong Zhang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Jerry M Baskin
- Department of Biology, University of Kentucky, Lexington, Kentucky
| | - Carol C Baskin
- Department of Biology, University of Kentucky, Lexington, Kentucky
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, Kentucky
| | - Zhaoren Wang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Rong Liu
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Juan Du
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Xuejun Yang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Zhenying Huang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| |
Collapse
|
34
|
Chaufan G, Galvano C, Nieves M, Mudry MD, Ríos de Molina MDC, Andrioli NB. Oxidative Response and Micronucleus Centromere Assay in HEp-2 Cells Exposed to Fungicide Iprodione. Chem Res Toxicol 2019; 32:745-752. [DOI: 10.1021/acs.chemrestox.8b00405] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Gabriela Chaufan
- Laboratorio de Enzimología Estrés y Metabolismo, Departamento de Química Biológica, Facultad de Ciencias Exactas y Naturales, Consejo de Investigaciones Científicas y Técnicas, Universidad de Buenos Aires (IQUIBICEN-CONICET), Ciudad Universitaria, Pabellón II, 4° Piso Laboratories. 43-46, C1428EGA Buenos Aires, Argentina
- Consejo Nacional de Investigaciones Cientificas y Técnicas, Universidad de Buenos Aires, C1428EGA Buenos Aires, Argentina
| | - Camila Galvano
- GIBE (Grupo de Investigación en Biología Evolutiva), FCEyN-UBA, Facultad de Ciencias Exactas y Naturales, Instituto de Ecología, Genética y Evolución de Buenos Aires - Consejo de Investigaciones Científicas y Técnicas), Universidad de Buenos Aires (IEGEBA−CONICET), Ciudad Universitaria, Pabellón II, 4° Piso Laboratories. 43-46, C1428EGA Buenos Aires, Argentina
| | - Mariela Nieves
- GIBE (Grupo de Investigación en Biología Evolutiva), FCEyN-UBA, Facultad de Ciencias Exactas y Naturales, Instituto de Ecología, Genética y Evolución de Buenos Aires - Consejo de Investigaciones Científicas y Técnicas), Universidad de Buenos Aires (IEGEBA−CONICET), Ciudad Universitaria, Pabellón II, 4° Piso Laboratories. 43-46, C1428EGA Buenos Aires, Argentina
- Consejo Nacional de Investigaciones Cientificas y Técnicas, Universidad de Buenos Aires, C1428EGA Buenos Aires, Argentina
| | - Marta D. Mudry
- GIBE (Grupo de Investigación en Biología Evolutiva), FCEyN-UBA, Facultad de Ciencias Exactas y Naturales, Instituto de Ecología, Genética y Evolución de Buenos Aires - Consejo de Investigaciones Científicas y Técnicas), Universidad de Buenos Aires (IEGEBA−CONICET), Ciudad Universitaria, Pabellón II, 4° Piso Laboratories. 43-46, C1428EGA Buenos Aires, Argentina
- Consejo Nacional de Investigaciones Cientificas y Técnicas, Universidad de Buenos Aires, C1428EGA Buenos Aires, Argentina
| | - Maria del Carmen Ríos de Molina
- Laboratorio de Enzimología Estrés y Metabolismo, Departamento de Química Biológica, Facultad de Ciencias Exactas y Naturales, Consejo de Investigaciones Científicas y Técnicas, Universidad de Buenos Aires (IQUIBICEN-CONICET), Ciudad Universitaria, Pabellón II, 4° Piso Laboratories. 43-46, C1428EGA Buenos Aires, Argentina
- Consejo Nacional de Investigaciones Cientificas y Técnicas, Universidad de Buenos Aires, C1428EGA Buenos Aires, Argentina
| | - Nancy B. Andrioli
- GIBE (Grupo de Investigación en Biología Evolutiva), FCEyN-UBA, Facultad de Ciencias Exactas y Naturales, Instituto de Ecología, Genética y Evolución de Buenos Aires - Consejo de Investigaciones Científicas y Técnicas), Universidad de Buenos Aires (IEGEBA−CONICET), Ciudad Universitaria, Pabellón II, 4° Piso Laboratories. 43-46, C1428EGA Buenos Aires, Argentina
| |
Collapse
|
35
|
Vasileiadis S, Puglisi E, Papadopoulou ES, Pertile G, Suciu N, Pappolla RA, Tourna M, Karas PA, Papadimitriou F, Kasiotakis A, Ipsilanti N, Ferrarini A, Sułowicz S, Fornasier F, Menkissoglu-Spiroudi U, Nicol GW, Trevisan M, Karpouzas DG. Blame It on the Metabolite: 3,5-Dichloroaniline Rather than the Parent Compound Is Responsible for the Decreasing Diversity and Function of Soil Microorganisms. Appl Environ Microbiol 2018; 84:e01536-18. [PMID: 30194100 PMCID: PMC6210116 DOI: 10.1128/aem.01536-18] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2018] [Accepted: 08/29/2018] [Indexed: 12/12/2022] Open
Abstract
Pesticides are key stressors of soil microorganisms with reciprocal effects on ecosystem functioning. These effects have been mainly attributed to the parent compounds, while the impact of their transformation products (TPs) has been largely overlooked. We assessed in a meadow soil (soil A) the transformation of iprodione and its toxicity in relation to (i) the abundance of functional microbial groups, (ii) the activity of key microbial enzymes, and (iii) the diversity of bacteria, fungi, and ammonia-oxidizing microorganisms (AOM) using amplicon sequencing. 3,5-Dichloroaniline (3,5-DCA), the main iprodione TP, was identified as a key explanatory factor for the persistent reduction in enzymatic activities and potential nitrification (PN) and for the observed structural changes in the bacterial and fungal communities. The abundances of certain bacterial (Actinobacteria, Hyphomicrobiaceae, Ilumatobacter, and Solirubrobacter) and fungal (Pichiaceae) groups were negatively correlated with 3,5-DCA. A subsequent study in a fallow agricultural soil (soil B) showed limited formation of 3,5-DCA, which concurred with the lack of effects on nitrification. Direct 3,5-DCA application in soil B induced a dose-dependent reduction of PN and NO3--N, which recovered with time. In vitro assays with terrestrial AOM verified the greater toxicity of 3,5-DCA over iprodione. "Candidatus Nitrosotalea sinensis" Nd2 was the most sensitive AOM to both compounds. Our findings build on previous evidence on the sensitivity of AOM to pesticides, reinforcing their potential utilization as indicators of the soil microbial toxicity of pesticides in pesticide environmental risk analysis and stressing the need to consider the contribution of TPs in the toxicity of pesticides on the soil microbial community.IMPORTANCE Pesticide toxicity on soil microorganisms is an emerging issue in pesticide risk assessment, dictated by the pivotal role of soil microorganisms in ecosystem services. However, the focus has traditionally been on parent compounds, while transformation products (TPs) are largely overlooked. We tested the hypothesis that TPs can be major contributors to the soil microbial toxicity of pesticides using iprodione and its main TP, 3,5-dichloroaniline, as model compounds. We demonstrated, by measuring functional and structural endpoints, that 3,5-dichloroaniline and not iprodione was associated with adverse effects on soil microorganisms, with nitrification being mostly affected. Pioneering in vitro assays with relevant ammonia-oxidizing bacteria and archaea verified the greater toxicity of 3,5-dichloroaniline. Our findings are expected to advance environmental risk assessment, highlighting the potential of ammonia-oxidizing microorganisms as indicators of the soil microbial toxicity of pesticides and stressing the need to consider the contribution of TPs to pesticide soil microbial toxicity.
Collapse
Affiliation(s)
- S Vasileiadis
- Universita Cattolica del Sacro Cuore, Department for Sustainable Food Process, Piacenza, Italy
- University of Thessaly, Department of Biochemistry and Biotechnology, Laboratory of Plant and Environmental Biotechnology, Larissa, Greece
| | - E Puglisi
- Universita Cattolica del Sacro Cuore, Department for Sustainable Food Process, Piacenza, Italy
| | - E S Papadopoulou
- University of Thessaly, Department of Biochemistry and Biotechnology, Laboratory of Plant and Environmental Biotechnology, Larissa, Greece
- Aristotle University of Thessaloniki, Faculty of Agriculture Forestry and Natural Environment, School of Agriculture, Pesticide Science Laboratory, Thessaloniki, Greece
| | - G Pertile
- Universita Cattolica del Sacro Cuore, Department for Sustainable Food Process, Piacenza, Italy
| | - N Suciu
- Universita Cattolica del Sacro Cuore, Department for Sustainable Food Process, Piacenza, Italy
| | - R A Pappolla
- Universita Cattolica del Sacro Cuore, Department for Sustainable Food Process, Piacenza, Italy
| | - M Tourna
- University of Thessaly, Department of Biochemistry and Biotechnology, Laboratory of Plant and Environmental Biotechnology, Larissa, Greece
| | - P A Karas
- University of Thessaly, Department of Biochemistry and Biotechnology, Laboratory of Plant and Environmental Biotechnology, Larissa, Greece
| | - F Papadimitriou
- University of Thessaly, Department of Biochemistry and Biotechnology, Laboratory of Plant and Environmental Biotechnology, Larissa, Greece
| | - A Kasiotakis
- University of Thessaly, Department of Biochemistry and Biotechnology, Laboratory of Plant and Environmental Biotechnology, Larissa, Greece
| | - N Ipsilanti
- University of Thessaly, Department of Biochemistry and Biotechnology, Laboratory of Plant and Environmental Biotechnology, Larissa, Greece
| | - A Ferrarini
- Universita Cattolica del Sacro Cuore, Department of Sustainable Crop Production, Piacenza, Italy
| | - S Sułowicz
- University of Silesia, Department of Microbiology, Katowice, Poland
| | - F Fornasier
- Consiglio per la Ricerca e la Sperimentazione in Agricoltura, Centro di Ricerca per lo Studio delle Relazioni tra Pianti e Suolo, Gorizia, Italy
| | - U Menkissoglu-Spiroudi
- Aristotle University of Thessaloniki, Faculty of Agriculture Forestry and Natural Environment, School of Agriculture, Pesticide Science Laboratory, Thessaloniki, Greece
| | - G W Nicol
- Ecole Centrale de Lyon, Group of Environmental Microbial Genomics, Lyon, France
| | - M Trevisan
- Universita Cattolica del Sacro Cuore, Department for Sustainable Food Process, Piacenza, Italy
| | - D G Karpouzas
- Universita Cattolica del Sacro Cuore, Department for Sustainable Food Process, Piacenza, Italy
- University of Thessaly, Department of Biochemistry and Biotechnology, Laboratory of Plant and Environmental Biotechnology, Larissa, Greece
| |
Collapse
|
36
|
Zhang M, Wang W, Wang D, Heenan M, Xu Z. Short-term responses of soil nitrogen mineralization, nitrification and denitrification to prescribed burning in a suburban forest ecosystem of subtropical Australia. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 642:879-886. [PMID: 29925058 DOI: 10.1016/j.scitotenv.2018.06.144] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2018] [Revised: 06/11/2018] [Accepted: 06/11/2018] [Indexed: 06/08/2023]
Abstract
As an anthropogenic disturbance, prescribed burning may alter the biogeochemistries of nutrients, including nitrogen (N) cycling, in forest ecosystems. This study aimed to examine the changes in N mineralization, nitrification and denitrification rates following prescribed burning in a suburban forest located in subtropical Australia and assess the interactive relationships among soil properties, functional gene abundances and N transformation rates. After a prescribed burning event, soil pH value increased, but soil labile carbon and mineral N contents decreased. Net N mineralization rates, potential nitrification rates and ammonium-oxidizing archaea and bacteria (AOA and AOB) amoA gene abundances in the soils all increased after 3 months of the prescribed burning. However, the abundances of different functional genes related to denitrification changed differently after the prescribed burning. The net N mineralization rates could be best described by soil abiotic properties, rather than functional gene abundances. In contrast, potential denitrification rates were positively related to soil nirK gene abundances. Potential nitrification rates could be influenced by both soil chemical and microbial properties. The results revealed that the prescribed burning might increase N mineralization and nitrification rates in the forest soil.
Collapse
Affiliation(s)
- Manyun Zhang
- Environmental Futures Research Institute, School of Environment and Science, Griffith University, Brisbane, Queensland 4111, Australia
| | - Weijin Wang
- Environmental Futures Research Institute, School of Environment and Science, Griffith University, Brisbane, Queensland 4111, Australia; Department of Environment and Science, Dutton Park, Queensland 4102, Australia.
| | - Dianjie Wang
- Environmental Futures Research Institute, School of Environment and Science, Griffith University, Brisbane, Queensland 4111, Australia
| | - Marijke Heenan
- Department of Environment and Science, Dutton Park, Queensland 4102, Australia
| | - Zhihong Xu
- Environmental Futures Research Institute, School of Environment and Science, Griffith University, Brisbane, Queensland 4111, Australia
| |
Collapse
|
37
|
Özdoğan N, Kapukıran F, Mutluoğlu G, Chormey DS, Bakırdere S. Simultaneous determination of iprodione, procymidone, and chlorflurenol in lake water and wastewater matrices by GC-MS after multivariate optimization of binary dispersive liquid-liquid microextraction. ENVIRONMENTAL MONITORING AND ASSESSMENT 2018; 190:607. [PMID: 30255206 DOI: 10.1007/s10661-018-6961-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2018] [Accepted: 09/05/2018] [Indexed: 06/08/2023]
Abstract
This study reports the optimization of a binary dispersive liquid-liquid microextraction method for the determination of iprodione, procymidone, and chlorflurenol by gas chromatography mass spectrometry. The study was aimed at using two extraction solvents to increase the extraction efficiency of all analytes. The binary solvents recorded results higher than the mono-solvents. After examining the effects of main experimental parameters and their interactions by analysis of variance, 200 μL of binary mixture (dichloromethane and 1,2-dichloroethane), 2.5 mL of ethanol, and 15 s vortex were obtained as optimum parameters. The detection and quantification limits calculated for the analytes were found to be between 0.30-1.6 and 1.0-5.3 ng/mL, respectively. Enhancement in detection power calculated as a ratio of the binary extraction detection limit to the detection limit of direct GC-MS analysis was 105-, 214-, and 233-fold for chlorflurenol, iprodione, and procymidone, respectively. In order to check the accuracy of the developed method, recovery study was performed. Water sampled from a lake and two wastewater samples from treatment facilities were spiked at two concentrations, and the percent recovery calculated for the samples ranged between 87 and 116%. These results confirmed the suitability of the method to real samples for accurate determination of the analytes at trace levels.
Collapse
Affiliation(s)
- Nizamettin Özdoğan
- Department of Environmental Engineer, Institute of Science, Bülent Ecevit University, 67100, Zonguldak, Turkey.
| | - Fatih Kapukıran
- Department of Environmental Engineer, Institute of Science, Bülent Ecevit University, 67100, Zonguldak, Turkey
| | - Gülşen Mutluoğlu
- Faculty of Art and Science, Department of Chemistry, Yıldız Technical University, 34210, Istanbul, Turkey
| | - Dotse Selali Chormey
- Faculty of Art and Science, Department of Chemistry, Yıldız Technical University, 34210, Istanbul, Turkey
| | - Sezgin Bakırdere
- Faculty of Art and Science, Department of Chemistry, Yıldız Technical University, 34210, Istanbul, Turkey
| |
Collapse
|
38
|
Long-term effects of multi-walled carbon nanotubes on the performance and microbial community structures of an anaerobic granular sludge system. Appl Microbiol Biotechnol 2018; 102:9351-9361. [DOI: 10.1007/s00253-018-9273-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2018] [Revised: 06/19/2018] [Accepted: 07/25/2018] [Indexed: 01/03/2023]
|
39
|
Du P, Wu X, Xu J, Dong F, Liu X, Zheng Y. Effects of trifluralin on the soil microbial community and functional groups involved in nitrogen cycling. JOURNAL OF HAZARDOUS MATERIALS 2018; 353:204-213. [PMID: 29674095 DOI: 10.1016/j.jhazmat.2018.04.012] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2017] [Revised: 03/13/2018] [Accepted: 04/04/2018] [Indexed: 06/08/2023]
Abstract
Large amounts of trifluralin are applied each year for weed control; however, its effects on soil microbial communities and functions are unknown. Two agricultural soils, one silty loam and one silty clay were spiked with TFL (0, 0.84, 8.4, and 84 mg kg-1) and studied the effects using a laboratory microcosm approach. The half-lives were 44.19-61.83 d in all cases. Bacterial abundance increased 1.12-5.56 times by TFL, but the diversity decreased. From the next-generation sequencing results, TFL altered the bacterial community structure, which initially diverged from the control community structure, then recovered, and then diverged again. Linear discriminant analysis effect size indicated that Sphingomonas and Xanthomonadaceae were the predominant species on day 7 and 15 in TFL treatments. N2-fixing bacteria were initially increased, then decreased, and then recovered, and it was positively correlated with NH4+-N content. Compared with the control, ammonia-oxidizing bacteria were decreased by 25.51-92.63%, ammonia-oxidizing archaea were decreased by 17.12-85.21% (except day 7), and the NO3--N concentration was also inhibited. In contrast to bacteria, fungal abundance was inhibited without any observable effects on fungal diversity or community structure. These results suggest that TFL impacts soil bacterial community and alters functional microorganisms involved in soil N processing.
Collapse
Affiliation(s)
- Pengqiang Du
- College of Chemistry, Central China Normal University, No. 152 Luoyu Road, Wuhan, 430079, China; State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing, 100193, China
| | - Xiaohu Wu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing, 100193, China
| | - Jun Xu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing, 100193, China
| | - Fengshou Dong
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing, 100193, China.
| | - Xingang Liu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing, 100193, China.
| | - Yongquan Zheng
- College of Chemistry, Central China Normal University, No. 152 Luoyu Road, Wuhan, 430079, China; State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing, 100193, China.
| |
Collapse
|
40
|
Xu XH, Liu XM, Zhang L, Mu Y, Zhu XY, Fang JY, Li SP, Jiang JD. Bioaugmentation of chlorothalonil-contaminated soil with hydrolytically or reductively dehalogenating strain and its effect on soil microbial community. JOURNAL OF HAZARDOUS MATERIALS 2018; 351:240-249. [PMID: 29550558 DOI: 10.1016/j.jhazmat.2018.03.002] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2017] [Revised: 03/02/2018] [Accepted: 03/03/2018] [Indexed: 05/24/2023]
Abstract
Although bioaugmentation of pollutant-contaminated sites is a great concern, there are few reports on the relationships among indigenous microbial consortia, exogenous inocula, and pollutants in a bioaugmentation process. In this study, bioaugmentation with Pseudochrobactrum sp. BSQ1 and Massilia sp. BLM18, which can hydrolytically and reductively dehalogenate chlorothalonil (TPN), respectively, was studied for its ability to remove TPN from soil; the alteration of the soil microbial community during the bioaugmentation process was investigated. The results showed that TPN (50 mg/kg) was completely removed in both bioaugmentation treatments within 35 days with half-lives of 6.8 and 9.8 days for strains BSQ1 and BLM18 respectively. In high concentration of TPN-treated soils (100 mg/kg), the bioaugmentation with strains BSQ1 and BLM18 respectively reduced 76.7% and 62.0% of TPN within 35 days. The TPN treatment significantly decreased bacterial richness and diversity and improved the growth of bacteria related to the elimination of chlorinated organic pollutants. However, little influence on soil microbial community was observed for each inoculation treatment (without TPN treatment), showing that TPN treatment is the main force for the shift in indigenous consortia. This study provides insights into the effects of halogenated fungicide application and bioaugmentation on indigenous soil microbiomes.
Collapse
Affiliation(s)
- Xi-Hui Xu
- Department of Microbiology, Key Lab of Environmental Microbiology for Agriculture, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, 210095, Nanjing, China
| | - Xiao-Mei Liu
- Department of Microbiology, Key Lab of Environmental Microbiology for Agriculture, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, 210095, Nanjing, China; College of Food Science and Engineering, Inner Mongolia Agricultural University, 010018, Hohhot, China
| | - Long Zhang
- Department of Microbiology, Key Lab of Environmental Microbiology for Agriculture, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, 210095, Nanjing, China
| | - Yang Mu
- Department of Microbiology, Key Lab of Environmental Microbiology for Agriculture, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, 210095, Nanjing, China
| | - Xu-Yuan Zhu
- Department of Microbiology, Key Lab of Environmental Microbiology for Agriculture, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, 210095, Nanjing, China
| | - Jing-Ya Fang
- Department of Microbiology, Key Lab of Environmental Microbiology for Agriculture, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, 210095, Nanjing, China
| | - Shun-Peng Li
- Department of Microbiology, Key Lab of Environmental Microbiology for Agriculture, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, 210095, Nanjing, China
| | - Jian-Dong Jiang
- Department of Microbiology, Key Lab of Environmental Microbiology for Agriculture, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, 210095, Nanjing, China; Jiangsu Key Lab for Solid Organic Waste Utilization, 210095, Nanjing, China.
| |
Collapse
|
41
|
Wu M, Li G, Chen X, Liu J, Liu M, Jiang C, Li Z. Rational dose of insecticide chlorantraniliprole displays a transient impact on the microbial metabolic functions and bacterial community in a silty-loam paddy soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 616-617:236-244. [PMID: 29117582 DOI: 10.1016/j.scitotenv.2017.11.012] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2017] [Revised: 09/28/2017] [Accepted: 11/01/2017] [Indexed: 06/07/2023]
Abstract
Chlorantraniliprole (CAP) is a newly developed insecticide widely used in rice fields in China. There have been few studies regarding its effects on soil microbial functional diversity and bacterial community composition. An 85-day microcosm experiment was performed to reveal the dissipation dynamics of CAP under different application doses in a silty-loam paddy soil in subtropical China. The half-life of CAP was 51.3 and 62.5d for low (1mgkg-1) and high (10mgkg-1) application dose, respectively. We used a combination of community level physiological profile (CLPP) and 16S rRNA gene sequencing analysis to get insights into the soil microbial features responded to CAP during the experiment. Non-metric multidimensional scaling (NMDS) performed on CLPP and the sequence results indicated that the soil microbial functional diversity and bacterial community composition were significantly changed by CAP application at day 14, and recovered to the similar level as no CAP treatment (CK) under low dose of CAP at day 36. However, high dose of CAP imposed longer effect on these soil microbial features, and was still significantly different from CK at day 36. Mcrobial taxa analysis at phylum level showed that high dose of CAP decreased the relative abundance of Nitrospirae at day 14, while increased Bacteroidetes and decreased Actinobacteria, Nitrospirae, and Firmicutes at day 36 in relative to CK. Low dose of CAP only increased Crenarchaeota and decreased Nitrospirae at day 14. The response ratio (RR) analysis was used to quantify significant responses of OTUs to different doses of CAP and found that CAP significantly affected the microbes involving the N transformation. This study provides a basic information to aid in the development of application regulations regarding the safe use of CAP in soil and inspire us to apply CAP at rational dose to minimize its ecotoxicity on soil microbes.
Collapse
Affiliation(s)
- Meng Wu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Guilong Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Xiaofen Chen
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Jia Liu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Ming Liu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Chunyu Jiang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Zhongpei Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; Graduate University of Chinese Academy of Sciences, Beijing 100049, China.
| |
Collapse
|
42
|
Tian H, Kong L, Megharaj M, He W. Contribution of attendant anions on cadmium toxicity to soil enzymes. CHEMOSPHERE 2017; 187:19-26. [PMID: 28829948 DOI: 10.1016/j.chemosphere.2017.08.073] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2017] [Revised: 07/30/2017] [Accepted: 08/16/2017] [Indexed: 06/07/2023]
Abstract
Sorption and desorption are critical processes to control the mobility and biotoxicity of cadmium (Cd) in soils. It is known that attendant anion species of heavy metals could affect metal adsorption on soils and might further alter their biotoxicity. However, for Cd, the influence of attendant anions on its sorption in soils and subsequent toxicity on soil enzymes are still unknown. In this work, four Cd compounds with different salt anions (SO42-, NO3-, Cl-, and Ac-) were selected to investigate their impact of on the sorption, soil dehydrogenase activity (DHA) and alkaline phosphatase activity (ALP). Thus, a series of simulated Cd pollution batch experiments including measuring adsorption-desorption behavior of Cd on soils and soil enzyme activities were carried out. Results showed that CdSO4 exhibited highest sorption capacity among the tested soils except in Hunan soil. The Cd sorption with NO3- displayed a similar behavior with Cl- on all tested soils. Compared with soil properties, all four kinds of anions on Cd sorption played a more significant role affecting Cd ecological toxicity to soil DHA and ALP. Cd in acetate or nitrate form appears more sensitive towards DHA than sulphate and chloride, while the later pair is more toxic towards ALP than the former. These results have important implications for evaluation of Cd contamination using soil enzyme as bioindicator.
Collapse
Affiliation(s)
- Haixia Tian
- College of Natural Resources and Environment, Northwest A&F University, Key Laboratory of Plant Nutrition and Agro-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi, 712100, China
| | - Long Kong
- College of Natural Resources and Environment, Northwest A&F University, Key Laboratory of Plant Nutrition and Agro-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi, 712100, China
| | - Mallavarapu Megharaj
- Global Centre for Environmental Remediation, Faculty of Science, University of Newcastle, Callaghan NSW 2308, Australia
| | - Wenxiang He
- College of Natural Resources and Environment, Northwest A&F University, Key Laboratory of Plant Nutrition and Agro-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi, 712100, China.
| |
Collapse
|
43
|
Zhang M, Wang W, Wang J, Teng Y, Xu Z. Dynamics of biochemical properties associated with soil nitrogen mineralization following nitrification inhibitor and fungicide applications. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:11340-11348. [PMID: 28303541 DOI: 10.1007/s11356-017-8762-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2016] [Accepted: 03/07/2017] [Indexed: 06/06/2023]
Abstract
Agrochemical applications may have side effects on soil biochemical properties related to soil nitrogen (N) mineralization and thus affect N cycling. The present study aimed to evaluate the effects of nitrification inhibitor 3,4-dimethylpyrazole phosphate (DMPP) and fungicide iprodione on soil neutral protease (NPR), alkaline protease (APR), chitinase (CHI), and their functional genes (nprA, aprA, and chiA) related to soil N mineralization. The following four treatments were included: blank control (CK), single DMPP application (DAA), weekly iprodione applications (IPR), and the combined applications of DMPP and iprodione (DI). Compared with the CK treatment, DMPP application significantly inhibited the CHI activity in the first 14 days of incubation, and iprodione applications, particularly when applied alone, decreased the NPR, APR, and CHI activities. Relative to the IPR treatment, extra DMPP application had the potential to alleviate the inhibitory effects of iprodione on the activities of these enzymes. DMPP application significantly increased aprA gene abundances after 14 days of incubation. However, repeated iprodione applications, alone or with the DMPP, decreased nprA and chiA gene abundances. Relative to the CK treatment, DMPP application generated negligible effects on the positive/negative correlations between soil enzyme activities and the corresponding functional gene abundances. However, the positive correlation between the CHI activity and chiA gene abundance was changed to negative correlation by repeated iprodione applications, alone or together with the DMPP. Our results demonstrated that agrochemical applications, particularly repeated fungicide applications, can have inadvertent effects on enzyme activities and functional gene abundances associated with soil N mineralization.
Collapse
Affiliation(s)
- Manyun Zhang
- Environmental Futures Research Institute, School of Natural Sciences, Griffith University, Brisbane, QLD, 4111, Australia.
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.
| | - Weijin Wang
- Environmental Futures Research Institute, School of Natural Sciences, Griffith University, Brisbane, QLD, 4111, Australia
- Department of Science, Information Technology and Innovation, Dutton Park, QLD, 4102, Australia
| | - Jun Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
- Chongqing Research Academy of Environmental Sciences, Chongqing, 401147, China
| | - Ying Teng
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.
| | - Zhihong Xu
- Environmental Futures Research Institute, School of Natural Sciences, Griffith University, Brisbane, QLD, 4111, Australia.
| |
Collapse
|