1
|
Ma X, Huete A, Liu Y, Zhu X, Nguyen H, Miura T, Chen M, Li X, Asrar G. A holistic big data approach to understand and manage increasing pollen-induced respiratory allergies under global change. GLOBAL CHANGE BIOLOGY 2024; 30:e17451. [PMID: 39092794 DOI: 10.1111/gcb.17451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2024] [Revised: 07/22/2024] [Accepted: 07/22/2024] [Indexed: 08/04/2024]
Abstract
Nearly a third of the world's population suffers from pollen‐induced respiratory allergies—and the number is rising. For those affected, the situation is becoming more stressful every year with climate change, rising atmospheric CO2 levels, and urbanization. These phenomena form a complex interface between human health and global change, yet the critical information needed to unravel it remains fragmented. A holistic big data approach, with close collaboration between Earth system scientists and health experts, is urgently needed to achieve meaningful insights that advance our understanding and management of increasing pollen‐induced respiratory allergies under global change.
Collapse
Affiliation(s)
- Xuanlong Ma
- College of Earth and Environmental Sciences, Lanzhou University, Lanzhou, Gansu, China
| | - Alfredo Huete
- School of Life Sciences, University of Technology Sydney, Ultimo, New South Wales, Australia
| | - Yuxia Liu
- Department of Geography and Geospatial Sciences, Geospatial Science Center of Excellence, South Dakota State University, Brookings, South Dakota, USA
| | - Xiaoyu Zhu
- College of Earth and Environmental Sciences, Lanzhou University, Lanzhou, Gansu, China
| | - Ha Nguyen
- CSIRO Agriculture & Food, Black Mountains, Acton, Australian Capital Territory, Australia
| | - Tomoaki Miura
- Department of Natural Resources and Environmental Management, University of Hawai'i at Mānoa, Honolulu, Hawaii, USA
| | - Min Chen
- Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Madison, Wisconsin, USA
- Data Science Institute, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Xuecao Li
- College of Land Science and Technology, China Agricultural University, Beijing, China
| | | |
Collapse
|
2
|
Van Haeften S, Campbell BC, Milic A, Addison-Smith E, Al Kouba J, Huete A, Beggs PJ, Davies JM. Environmental DNA analysis of airborne poaceae (grass) pollen reveals taxonomic diversity across seasons and climate zones. ENVIRONMENTAL RESEARCH 2024; 247:117983. [PMID: 38163541 DOI: 10.1016/j.envres.2023.117983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 12/08/2023] [Accepted: 12/16/2023] [Indexed: 01/03/2024]
Abstract
BACKGROUND Grasses populate most biogeographical zones, and their diversity influences allergic sensitisation to pollen. Previously, the contribution of different Poaceae subfamilies to airborne pollen has mostly been inferred from historical herbarium records. We recently applied environmental (e)DNA metabarcoding at one subtropical site revealing that successive airborne grass pollen peaks were derived from repeated flowering of Chloridoid and Panicoid grasses over a season. This study aimed to compare spatiotemporal patterns in grass pollen exposure across seasons and climate zones. METHODS Airborne pollen concentrations across two austral pollen seasons spanning 2017-2019 at subtropical (Mutdapilly and Rocklea, Queensland) and temperate (Macquarie Park and Richmond, New South Wales) sites, were determined with a routine volumetric impaction sampler and counting by light microscopy. Poaceae rbcL metabarcode sequences amplified from daily pollen samples collected once per week were assigned to subfamily and genus using a ribosomal classifier and compared with Atlas of Living Australia sighting records. RESULTS eDNA analysis revealed distinct dominance patterns of grass pollen at various sites: Panicoid grasses prevailed in both subtropical Mutdapilly and temperate Macquarie Park, whilst Chloridoid grasses dominated the subtropical Rocklea site. Overall, subtropical sites showed significantly higher proportion of pollen from Chloridoid grasses than temperate sites, whereas the temperate sites showed a significantly higher proportion of pollen from Pooideae grasses than subtropical sites. Timing of airborne Pooid (spring), Panicoid and Chloridoid (late spring to autumn), and Arundinoid (autumn) pollen were significantly related to number of days from mid-winter. Proportions of eDNA for subfamilies correlated with distributions grass sighting records between climate zones. CONCLUSIONS eDNA analysis enabled finer taxonomic discernment of Poaceae pollen records across seasons and climate zones with implications for understanding adaptation of grasslands to climate change, and the complexity of pollen exposure for patients with allergic respiratory diseases.
Collapse
Affiliation(s)
- Shanice Van Haeften
- School of Biomedical Sciences, Centre Immunology and Infection Control and Centre for Environment, Queensland University of Technology, Brisbane, Queensland, Australia
| | - Bradley C Campbell
- School of Biomedical Sciences, Centre Immunology and Infection Control and Centre for Environment, Queensland University of Technology, Brisbane, Queensland, Australia
| | - Andelija Milic
- School of Biomedical Sciences, Centre Immunology and Infection Control and Centre for Environment, Queensland University of Technology, Brisbane, Queensland, Australia
| | - Elizabeth Addison-Smith
- School of Biomedical Sciences, Centre Immunology and Infection Control and Centre for Environment, Queensland University of Technology, Brisbane, Queensland, Australia
| | - Jane Al Kouba
- School of Natural Sciences, Faculty of Science and Engineering, Macquarie University, Sydney, New South Wales, Australia
| | - Alfredo Huete
- School of Life Sciences, University of Technology Sydney, Sydney, New South Wales, Australia
| | - Paul J Beggs
- School of Natural Sciences, Faculty of Science and Engineering, Macquarie University, Sydney, New South Wales, Australia
| | - Janet M Davies
- School of Biomedical Sciences, Centre Immunology and Infection Control and Centre for Environment, Queensland University of Technology, Brisbane, Queensland, Australia.
| |
Collapse
|
3
|
Noirmain F, Baray JL, Deguillaume L, Van Baelen J, Latour D. Exploring the size-dependent dynamics of photosynthetic cells in rainwater: The influence of atmospheric variables and rain characteristics. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167746. [PMID: 37827319 DOI: 10.1016/j.scitotenv.2023.167746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 10/09/2023] [Accepted: 10/09/2023] [Indexed: 10/14/2023]
Abstract
The presence of microalgae in the atmosphere raises health and environmental concerns. Despite recent scientific advances, our knowledge of the origins and dynamics of photosynthetic cells in relation to atmospheric processes is limited due to a lack of empirical data. To address this gap, we conducted a one-year survey, collecting and analyzing rainwater samples. This study proposes to investigate the temporal dynamics of photosynthetic cells based on their size in combination with a unique dataset of variables of interest: type of rain and its characteristics, local meteorology, concentrations of inorganic chemical species, and long-range air mass transport. The analysis of the biochemical composition of rainwater, along with its correlation with the origin of air masses using ions as tracers, provides evidence of the long-range transport of photosynthetic cells. Additionally, our study reveals distinct removal mechanisms from the atmosphere for photosynthetic cells depending on their size. Our results suggest that convective events with high-intensity rainfall led to the efficient removal of medium-sized photosynthetic cells (4-15 μm) from the atmosphere. However, removal mechanisms for small (<4 μm) and large-sized cells (>15 μm) are not influenced by microphysical rainfall characteristics and seem to be governed by different atmospheric processes: dry deposition is proposed to be a significant mechanism for the removal of large-sized photosynthetic cells, while small-sized cells detected in rain are correlated with the horizontal wind speed and duration of rainfall, particularly during stratiform events. This implies that the removal of photosynthetic cells from the atmosphere is strongly influenced by environmental variables, which are expected to vary in response to global change. Therefore, it is crucial to enhance the monitoring of photosynthetic cells in relation to atmospheric processes and investigate the potential impact of the dissemination of genetic material from distant sources on recipient ecosystems.
Collapse
Affiliation(s)
- Fanny Noirmain
- Université Clermont Auvergne, CNRS, Laboratoire Microorganismes: Genome, Environnement (LMGE), UMR6023, Clermont-Ferrand, France.
| | - Jean-Luc Baray
- Université Clermont Auvergne, CNRS, Laboratoire de Météorologie Physique (LaMP), UMR6016, Clermont-Ferrand, France; Université Clermont Auvergne, CNRS, Observatoire de Physique du Globe de Clermont Ferrand (OPGC), UAR833, Clermont-Ferrand, France
| | - Laurent Deguillaume
- Université Clermont Auvergne, CNRS, Laboratoire de Météorologie Physique (LaMP), UMR6016, Clermont-Ferrand, France; Université Clermont Auvergne, CNRS, Observatoire de Physique du Globe de Clermont Ferrand (OPGC), UAR833, Clermont-Ferrand, France
| | - Joël Van Baelen
- Université de La Réunion, CNRS, Météo-France, Laboratoire de l'Atmosphère et des Cyclones (LACy), UMR8105, St Denis de la Réunion, France
| | - Delphine Latour
- Université Clermont Auvergne, CNRS, Laboratoire Microorganismes: Genome, Environnement (LMGE), UMR6023, Clermont-Ferrand, France
| |
Collapse
|
4
|
Frisk CA, Adams-Groom B, Smith M. Isolating the species element in grass pollen allergy: A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 883:163661. [PMID: 37094678 DOI: 10.1016/j.scitotenv.2023.163661] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Revised: 04/17/2023] [Accepted: 04/18/2023] [Indexed: 05/03/2023]
Abstract
Grass pollen is a leading cause of allergy in many countries, particularly Europe. Although many elements of grass pollen production and dispersal are quite well researched, gaps still remain around the grass species that are predominant in the air and which of those are most likely to trigger allergy. In this comprehensive review we isolate the species aspect in grass pollen allergy by exploring the interdisciplinary interdependencies between plant ecology, public health, aerobiology, reproductive phenology and molecular ecology. We further identify current research gaps and provide open ended questions and recommendations for future research in an effort to focus the research community to develop novel strategies to combat grass pollen allergy. We emphasise the role of separating temperate and subtropical grasses, identified through divergence in evolutionary history, climate adaptations and flowering times. However, allergen cross-reactivity and the degree of IgE connectivity in sufferers between the two groups remains an area of active research. The importance of future research to identify allergen homology through biomolecular similarity and the connection to species taxonomy and practical implications of this to allergenicity is further emphasised. We also discuss the relevance of eDNA and molecular ecological techniques (DNA metabarcoding, qPCR and ELISA) as important tools in quantifying the connection between the biosphere with the atmosphere. By gaining more understanding of the connection between species-specific atmospheric eDNA and flowering phenology we will further elucidate the importance of species in releasing grass pollen and allergens to the atmosphere and their individual role in grass pollen allergy.
Collapse
Affiliation(s)
- Carl A Frisk
- Department of Urban Greening and Vegetation Ecology, Norwegian Institute of Bioeconomy Research, Ås, Norway.
| | - Beverley Adams-Groom
- School of Science and the Environment, University of Worcester, Worcester, United Kingdom
| | - Matt Smith
- School of Science and the Environment, University of Worcester, Worcester, United Kingdom
| |
Collapse
|
5
|
Ma X, Zhu X, Xie Q, Jin J, Zhou Y, Luo Y, Liu Y, Tian J, Zhao Y. Monitoring nature's calendar from space: Emerging topics in land surface phenology and associated opportunities for science applications. GLOBAL CHANGE BIOLOGY 2022; 28:7186-7204. [PMID: 36114727 PMCID: PMC9827868 DOI: 10.1111/gcb.16436] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 09/09/2022] [Accepted: 09/11/2022] [Indexed: 06/15/2023]
Abstract
Vegetation phenology has been viewed as the nature's calendar and an integrative indicator of plant-climate interactions. The correct representation of vegetation phenology is important for models to accurately simulate the exchange of carbon, water, and energy between the vegetated land surface and the atmosphere. Remote sensing has advanced the monitoring of vegetation phenology by providing spatially and temporally continuous data that together with conventional ground observations offers a unique contribution to our knowledge about the environmental impact on ecosystems as well as the ecological adaptations and feedback to global climate change. Land surface phenology (LSP) is defined as the use of satellites to monitor seasonal dynamics in vegetated land surfaces and to estimate phenological transition dates. LSP, as an interdisciplinary subject among remote sensing, ecology, and biometeorology, has undergone rapid development over the past few decades. Recent advances in sensor technologies, as well as data fusion techniques, have enabled novel phenology retrieval algorithms that refine phenology details at even higher spatiotemporal resolutions, providing new insights into ecosystem dynamics. As such, here we summarize the recent advances in LSP and the associated opportunities for science applications. We focus on the remaining challenges, promising techniques, and emerging topics that together we believe will truly form the very frontier of the global LSP research field.
Collapse
Affiliation(s)
- Xuanlong Ma
- College of Earth and Environmental Sciences, Lanzhou UniversityLanzhouChina
| | - Xiaolin Zhu
- Department of Land Surveying and Geo‐InformaticsThe Hong Kong Polytechnic UniversityHong KongChina
| | - Qiaoyun Xie
- School of Life Sciences, Faculty of ScienceUniversity of Technology SydneySydneyNew South WalesAustralia
| | - Jiaxin Jin
- College of Hydrology and Water Resources, Hohai UniversityNanjingChina
| | - Yuke Zhou
- Key Laboratory of Ecosystem Network Observation and ModellingInstitute of Geographic Sciences and Natural Resources Research, Chinese Academy of SciencesBeijingChina
| | - Yunpeng Luo
- Swiss Federal Institute for Forest, Snow and Landscape Research WSLBirmensdorfSwitzerland
- Department of Environmental System ScienceETH ZurichZurichSwitzerland
| | - Yuxia Liu
- School of Life Sciences, Faculty of ScienceUniversity of Technology SydneySydneyNew South WalesAustralia
- Geospatial Sciences Center of Excellence (GSCE)South Dakota State UniversityBrookingsSouth DakotaUSA
| | - Jiaqi Tian
- Department of Land Surveying and Geo‐InformaticsThe Hong Kong Polytechnic UniversityHong KongChina
- Department of GeographyNational University of SingaporeSingaporeSingapore
| | - Yuhe Zhao
- College of Earth and Environmental Sciences, Lanzhou UniversityLanzhouChina
| |
Collapse
|
6
|
Davies JM, Smith BA, Milic A, Campbell B, Van Haeften S, Burton P, Keaney B, Lampugnani ER, Vicendese D, Medek D, Huete A, Erbas B, Newbigin E, Katelaris CH, Haberle SG, Beggs PJ. The AusPollen partnership project: Allergenic airborne grass pollen seasonality and magnitude across temperate and subtropical eastern Australia, 2016-2020. ENVIRONMENTAL RESEARCH 2022; 214:113762. [PMID: 35779617 DOI: 10.1016/j.envres.2022.113762] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Revised: 05/25/2022] [Accepted: 06/22/2022] [Indexed: 06/15/2023]
Abstract
BACKGROUND Allergic rhinitis affects half a billion people globally, including a fifth of the Australian population. As the foremost outdoor allergen source, ambient grass pollen exposure is likely to be altered by climate change. The AusPollen Partnership aimed to standardize pollen monitoring and examine broad-scale biogeographical and meteorological factors influencing interannual variation in seasonality of grass pollen aerobiology in Australia. METHODS Daily airborne grass and other pollen concentrations in four eastern Australian cities separated by over 1700 km, were simultaneously monitored using Hirst-style samplers following the Australian Interim Pollen and Spore Monitoring Standard and Protocols over four seasons from 2016 to 2020. The grass seasonal pollen integral was determined. Gridded rainfall, temperature, and satellite-derived grassland sources up to 100 km from the monitoring site were analysed. RESULTS The complexity of grass pollen seasons was related to latitude with multiple major summer-autumn peaks in Brisbane, major spring and minor summer peaks in Sydney and Canberra, and single major spring peaks occurring in Melbourne. The subtropical site of Brisbane showed a higher proportion of grass out of total pollen than more temperate sites. The magnitude of the grass seasonal pollen integral was correlated with pasture greenness, rainfall and number of days over 30 °C, preceding and within the season, up to 100 km radii from monitoring sites. CONCLUSIONS Interannual fluctuations in Australian grass pollen season magnitude are strongly influenced by regional biogeography and both pre- and in-season weather. This first continental scale, Southern Hemisphere standardized aerobiology dataset forms the basis to track shifts in pollen seasonality, biodiversity and impacts on allergic respiratory diseases.
Collapse
Affiliation(s)
- Janet M Davies
- School of Biomedical Sciences, Centre Immunity and Infection Control, Centre for Environment, Queensland University of Technology, Herston, 4006, Queensland, Australia; Metro North Hospital and Health Service, Office of Research, Herston, 4006, Queensland, Australia.
| | - Beth Addison Smith
- School of Biomedical Sciences, Centre Immunity and Infection Control, Centre for Environment, Queensland University of Technology, Herston, 4006, Queensland, Australia
| | - Andelija Milic
- School of Biomedical Sciences, Centre Immunity and Infection Control, Centre for Environment, Queensland University of Technology, Herston, 4006, Queensland, Australia
| | - Bradley Campbell
- School of Biomedical Sciences, Centre Immunity and Infection Control, Centre for Environment, Queensland University of Technology, Herston, 4006, Queensland, Australia
| | - Shanice Van Haeften
- School of Biomedical Sciences, Centre Immunity and Infection Control, Centre for Environment, Queensland University of Technology, Herston, 4006, Queensland, Australia
| | - Pamela Burton
- Department of Immunology, Campbelltown Hospital, Campbelltown, Sydney, New South Wales, 2751, Australia
| | - Benedict Keaney
- The Australian National University, Canberra, Australian Capital Territory, 2601, Australia
| | - Edwin R Lampugnani
- School of Biosciences, The University of Melbourne, Parkville, Victoria, 3010, Australia
| | - Don Vicendese
- The Melbourne School of Population and Global Health, University of Melbourne, Parkville, Victoria, 3010, Australia; The Department of Mathematics and Statistics, La Trobe University, Bundoora, Victoria, 3086, Australia
| | - Danielle Medek
- Gold Coast University Hospital, Southport, Queensland, 4215, Australia
| | - Alfredo Huete
- School of Life Sciences, University of Technology Sydney, Ultimo, New South Wales, 2007, Australia
| | - Bircan Erbas
- School of Public Health, LaTrobe University, Bundoora, Victoria, 3086, Australia
| | - Edward Newbigin
- School of Biosciences, The University of Melbourne, Parkville, Victoria, 3010, Australia
| | - Constance H Katelaris
- Department of Immunology, Campbelltown Hospital, Campbelltown, Sydney, New South Wales, 2751, Australia; School of Medicine, Western Sydney University, Sydney, New South Wales, 2751, Australia
| | - Simon G Haberle
- The Australian National University, Canberra, Australian Capital Territory, 2601, Australia
| | - Paul J Beggs
- Department of Earth and Environmental Sciences, Faculty of Science and Engineering, Macquarie University, Sydney, New South Wales, 2109, Australia
| |
Collapse
|
7
|
Biological-based and remote sensing techniques to link vegetative and reproductive development and assess pollen emission in Mediterranean grasses. ECOL INFORM 2022. [DOI: 10.1016/j.ecoinf.2022.101898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|
8
|
Hughes KM, Price D, Suphioglu C. Importance of allergen–environment interactions in epidemic thunderstorm asthma. Ther Adv Respir Dis 2022; 16:17534666221099733. [PMID: 35603956 PMCID: PMC9134402 DOI: 10.1177/17534666221099733] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Australia is home to one of the highest rates of allergic rhinitis
worldwide. Commonly known as ‘hay fever’, this chronic condition
affects up to 30% of the population and is characterised by
sensitisation to pollen and fungal spores. Exposure to these
aeroallergens has been strongly associated with causing allergic
reactions and worsening asthma symptoms. Over the last few decades,
incidences of respiratory admissions have risen due to the increased
atmospheric concentration of airborne allergens. The fragmentation and
dispersion of these allergens is aided by environmental factors like
rainfall, temperature and interactions with atmospheric aerosols.
Extreme weather parameters, which continue to become more frequent due
to the impacts of climate change, have greatly fluctuated allergen
concentrations and led to epidemic thunderstorm asthma (ETSA) events
that have left hundreds, if not thousands, struggling to breathe.
While a link exists between airborne allergens, weather and
respiratory admissions, the underlying factors that influence these
epidemics remain unknown. It is important we understand the potential
threat these events pose on our susceptible populations and ensure our
health infrastructure is prepared for the next epidemic.
Collapse
Affiliation(s)
- Kira Morgan Hughes
- NeuroAllergy Research Laboratory (NARL), School of Life and Environmental Sciences, Faculty of Science, Engineering and Built Environment, Deakin University, Burwood, VIC, Australia
- Deakin AIRwatch Pollen and Spore Counting and Forecasting Facility, Deakin University, Melbourne, VIC, Australia
- Institute for Mental and Physical Health and Clinical Translation (IMPACT), Deakin University, Waurn Ponds, VIC, Australia
| | - Dwan Price
- NeuroAllergy Research Laboratory (NARL), School of Life and Environmental Sciences, Faculty of Science, Engineering and Built Environment, Deakin University, Burwood, VIC, Australia
- NeuroAllergy Research Laboratory (NARL), School of Life and Environmental Sciences, Faculty of Science, Engineering and Built Environment, Deakin University, Waurn Ponds, VIC, Australia
- Deakin AIRwatch Pollen and Spore Counting and Forecasting Facility, Deakin University, Melbourne, VIC, Australia
- Institute for Mental and Physical Health and Clinical Translation (IMPACT), Deakin University, Waurn Ponds, VIC, Australia
- COVID-19 Response, Department of Health, Melbourne, VIC, Australia
| | - Cenk Suphioglu
- NeuroAllergy Research Laboratory (NARL), School of Life and Environmental Sciences, Faculty of Science, Engineering and Built Environment, Deakin University, Burwood, VIC, Australia
- NeuroAllergy Research Laboratory (NARL), School of Life and Environmental Sciences, Faculty of Science, Engineering and Built Environment, Deakin University, Waurn Ponds, VIC, Australia
- Deakin AIRwatch Pollen and Spore Counting and Forecasting Facility, Deakin University, Melbourne, VIC, Australia
- Institute for Mental and Physical Health and Clinical Translation (IMPACT), Deakin University, Waurn Ponds Campus, 75 Pidgons Road, Geelong, VIC 3216, Australia
| |
Collapse
|
9
|
Zapata-Marin S, Schmidt AM, Weichenthal S, Katz DSW, Takaro T, Brook J, Lavigne E. Within city spatiotemporal variation of pollen concentration in the city of Toronto, Canada. ENVIRONMENTAL RESEARCH 2022; 206:112566. [PMID: 34922985 DOI: 10.1016/j.envres.2021.112566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Revised: 12/08/2021] [Accepted: 12/11/2021] [Indexed: 06/14/2023]
Abstract
BACKGROUND The exacerbation of asthma and respiratory allergies has been associated with exposure to aeroallergens such as pollen. Within an urban area, tree cover, level of urbanization, atmospheric conditions, and the number of source plants can influence spatiotemporal variations in outdoor pollen concentrations. OBJECTIVE We analyze weekly pollen measurements made between March and October 2018 over 17 sites in Toronto, Canada. The main goals are: to estimate the concentration of different types of pollen across the season; estimate the association, if any, between pollen concentration and environmental variables, and provide a spatiotemporal surface of concentration of different types of pollen across the weeks in the studied period. METHODS We propose an extension of the land-use regression model to account for the temporal variation of pollen levels and the high number of measurements equal to zero. Inference is performed under the Bayesian framework, and uncertainty of predicted values is naturally obtained through the posterior predictive distribution. RESULTS Tree pollen was positively associated with commercial areas and tree cover, and negatively associated with grass cover. Both grass and weed pollen were positively associated with industrial areas and TC brightness and negatively associated with the northing coordinate. The total pollen was associated with a combination of these environmental factors. Predicted surfaces of pollen concentration are shown at some sampled weeks for all pollen types. SIGNIFICANCE The predicted surfaces obtained here can help future epidemiological studies to find possible associations between pollen levels and some health outcome like respiratory allergies at different locations within the study area.
Collapse
Affiliation(s)
- Sara Zapata-Marin
- Quantitative Life Sciences Program, McGill University, Montreal, QC, Canada.
| | - Alexandra M Schmidt
- Quantitative Life Sciences Program, McGill University, Montreal, QC, Canada; Department of Epidemiology, Biostatistics, and Occupational Health, McGill University, Montreal, QC, Canada
| | - Scott Weichenthal
- Department of Epidemiology, Biostatistics, and Occupational Health, McGill University, Montreal, QC, Canada
| | - Daniel S W Katz
- Dell Medical School, University of Texas at Austin, Austin, TX, USA
| | - Tim Takaro
- Faculty of Health Sciences, Simon Fraser University, Burnaby, British Columbia, Canada
| | - Jeffrey Brook
- Department of Public Health Sciences, University of Toronto, Toronto, ON, Canada
| | - Eric Lavigne
- Air Health Science Division and Population Studies Division, Health Canada, Ottawa, ON, Canada
| |
Collapse
|
10
|
Addison-Smith B, Milic A, Dwarakanath D, Simunovic M, Van Haeften S, Timbrell V, Davies JM. Medium-Term Increases in Ambient Grass Pollen Between 1994-1999 and 2016-2020 in a Subtropical Climate Zone. FRONTIERS IN ALLERGY 2022; 2:705313. [PMID: 35387005 PMCID: PMC8974679 DOI: 10.3389/falgy.2021.705313] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Accepted: 06/30/2021] [Indexed: 12/21/2022] Open
Abstract
Grass pollen is the major outdoor trigger of allergic respiratory diseases. Climate change is influencing pollen seasonality in Northern Hemisphere temperate regions, but many aspects of the effects on grass pollen remain unclear. Carbon dioxide and temperature rises could increase the distribution of subtropical grasses, however, medium term shifts in grass pollen in subtropical climates have not yet been analysed. This study investigates changes in grass pollen aerobiology in a subtropical city of Brisbane, Australia, between the two available monitoring periods, 1994-1999 and 2016-2020. Potential drivers of pollen change were examined including weather and satellite-derived vegetation indicators. The magnitude of the seasonal pollen index for grass showed almost a three-fold increase for 2016-2020 over 1994-1999. The number and proportion of high and extreme grass pollen days in the recent period increased compared to earlier monitoring. Statistically significant changes were also identified for distributions of CO2, satellite-derived seasonal vegetation health indices, and daily maximum temperatures, but not for minimum temperatures, daily rainfall, or seasonal fraction of green groundcover. Quarterly grass pollen levels were correlated with corresponding vegetation health indices, and with green groundcover fraction, suggesting that seasonal-scale plant health was higher in the latter period. The magnitude of grass pollen exposure in the subtropical region of Brisbane has increased markedly in the recent past, posing an increased environmental health threat. This study suggests the need for continuous pollen monitoring to track and respond to the possible effects of climate change on grass pollen loads.
Collapse
Affiliation(s)
- Beth Addison-Smith
- School of Biomedical Sciences, Centre for Immunology and Infection Control, Centre for the Environment, Queensland University of Technology, Brisbane, QLD, Australia
| | - Andelija Milic
- School of Biomedical Sciences, Centre for Immunology and Infection Control, Centre for the Environment, Queensland University of Technology, Brisbane, QLD, Australia
| | - Divya Dwarakanath
- School of Biomedical Sciences, Centre for Immunology and Infection Control, Centre for the Environment, Queensland University of Technology, Brisbane, QLD, Australia
| | - Marko Simunovic
- School of Biomedical Sciences, Centre for Immunology and Infection Control, Centre for the Environment, Queensland University of Technology, Brisbane, QLD, Australia
| | - Shanice Van Haeften
- School of Biomedical Sciences, Centre for Immunology and Infection Control, Centre for the Environment, Queensland University of Technology, Brisbane, QLD, Australia
| | - Victoria Timbrell
- School of Biomedical Sciences, Centre for Immunology and Infection Control, Centre for the Environment, Queensland University of Technology, Brisbane, QLD, Australia
| | - Janet M Davies
- School of Biomedical Sciences, Centre for Immunology and Infection Control, Centre for the Environment, Queensland University of Technology, Brisbane, QLD, Australia.,Office of Research, Metro North Hospital and Health Service, Brisbane, QLD, Australia
| |
Collapse
|
11
|
Frisk CA, Apangu GP, Petch GM, Adams-Groom B, Skjøth CA. Atmospheric transport reveals grass pollen dispersion distances. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 814:152806. [PMID: 34982985 DOI: 10.1016/j.scitotenv.2021.152806] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2021] [Revised: 12/07/2021] [Accepted: 12/27/2021] [Indexed: 06/14/2023]
Abstract
Identifying the origin of bioaerosols is of central importance in many biological disciplines, such as human health, agriculture, forestry, aerobiology and conservation. Modelling sources, transportation pathways and sinks can reveal how bioaerosols vary in the atmosphere and their environmental impact. Grass pollen are particularly important due to their widely distributed source areas, relatively high abundance in the atmosphere and high allergenicity. Currently, studies are uncertain regarding sampler representability between distance and sources for grass pollen. Using generalized linear modelling, this study aimed to analyse this relationship further by answering the question of distance-to-source area contribution. Grass pollen concentrations were compared between urban and rural locations, located 6.4 km apart, during two years in Worcestershire, UK. We isolated and refined vegetation areas at 100 m × 100 m using the 2017 CEH Crop Map and conducted atmospheric modelling using HYSPLIT to identify which source areas could contribute pollen. Pollen concentrations were then modelled with source areas and meteorology using generalized linear mixed-models with three temporal variables as random variation. We found that the Seasonal Pollen Integral for grass pollen varied between both years and location, with the urban location having higher levels. Day of year showed higher temporal variation than the diurnal or annual variables. For the urban location, grass source areas within 30 km had positive significant effects in predicting grass pollen concentrations, while source areas within 2-10 km were important for the rural one. The source area differential was likely influenced by an urban-rural gradient that caused differences in the source area contribution. Temperature had positive highly significant effects on both locations while precipitation affected only the rural location. Combining atmospheric modelling, vegetation source maps and generalized linear modelling was found to be a highly accurate tool to identify transportation pathways of bioaerosols in landscape environments.
Collapse
Affiliation(s)
- Carl A Frisk
- National Pollen and Aerobiological Research Unit, School of Science and the Environment, University of Worcester, Henwick Grove, WR2 6AJ Worcester, UK.; School of Biology and Environmental Sciences, University College Dublin, Belfield, Dublin 4, Ireland.
| | - Godfrey P Apangu
- National Pollen and Aerobiological Research Unit, School of Science and the Environment, University of Worcester, Henwick Grove, WR2 6AJ Worcester, UK.; Department of Biointeractions & Crop Protection, Rothamsted Research, West Common, AL5 2JQ Harpenden, UK
| | - Geoffrey M Petch
- National Pollen and Aerobiological Research Unit, School of Science and the Environment, University of Worcester, Henwick Grove, WR2 6AJ Worcester, UK
| | - Beverley Adams-Groom
- National Pollen and Aerobiological Research Unit, School of Science and the Environment, University of Worcester, Henwick Grove, WR2 6AJ Worcester, UK
| | - Carsten A Skjøth
- National Pollen and Aerobiological Research Unit, School of Science and the Environment, University of Worcester, Henwick Grove, WR2 6AJ Worcester, UK
| |
Collapse
|
12
|
Picornell A, Oteros J, Ruiz-Mata R, Recio M, Trigo MM, Martínez-Bracero M, Lara B, Serrano-García A, Galán C, García-Mozo H, Alcázar P, Pérez-Badia R, Cabezudo B, Romero-Morte J, Rojo J. Methods for interpolating missing data in aerobiological databases. ENVIRONMENTAL RESEARCH 2021; 200:111391. [PMID: 34058184 DOI: 10.1016/j.envres.2021.111391] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Revised: 05/15/2021] [Accepted: 05/21/2021] [Indexed: 06/12/2023]
Abstract
Missing data is a common problem in scientific research. The availability of extensive environmental time series is usually laborious and difficult, and sometimes unexpected failures are not detected until samples are processed. Consequently, environmental databases frequently have some gaps with missing data in it. Applying an interpolation method before starting the data analysis can be a good solution in order to complete this missing information. Nevertheless, there are several different approaches whose accuracy should be considered and compared. In this study, data from 6 aerobiological sampling stations were used as an example of environmental data series to assess the accuracy of different interpolation methods. For that, observed daily pollen/spore concentration data series were randomly removed, interpolated by using different methods and then, compared with the observed data to measure the errors produced. Different periods, gap sizes, interpolation methods and bioaerosols were considered in order to check their influence in the interpolation accuracy. The moving mean interpolation method obtained the highest success rate as average. By using this method, a success rate of the 70% was obtained when the risk classes used in the alert systems of the pollen information platforms were taken into account. In general, errors were mostly greater when there were high oscillations in the concentrations of biotic particles during consecutive days. That is the reason why the pre-peak and peak periods showed the highest interpolation errors. The errors were also higher when gaps longer than 5 days were considered. So, for completing long periods of missing data, it would be advisable to test other methodological approaches. A new Variation Index based on the behaviour of the pollen/spore season (measurement of the variability of the concentrations every 2 consecutive days) was elaborated, which allows to estimate the potential error before the interpolation is applied.
Collapse
Affiliation(s)
- A Picornell
- Department of Botany and Plant Physiology, University of Malaga, Campus de Teatinos s/n, E-29071, Malaga, Spain.
| | - J Oteros
- Department of Botany, Ecology and Plant Physiology, Agrifood Campus of International Excellence CeiA3, University of Cordoba, Cordoba, Spain; Andalusian Inter-University Institute for Earth System IISTA, University of Cordoba, Spain
| | - R Ruiz-Mata
- Department of Botany and Plant Physiology, University of Malaga, Campus de Teatinos s/n, E-29071, Malaga, Spain
| | - M Recio
- Department of Botany and Plant Physiology, University of Malaga, Campus de Teatinos s/n, E-29071, Malaga, Spain
| | - M M Trigo
- Department of Botany and Plant Physiology, University of Malaga, Campus de Teatinos s/n, E-29071, Malaga, Spain
| | - M Martínez-Bracero
- Department of Botany, Ecology and Plant Physiology, Agrifood Campus of International Excellence CeiA3, University of Cordoba, Cordoba, Spain; Andalusian Inter-University Institute for Earth System IISTA, University of Cordoba, Spain; School of Chemical and Pharmaceutical Sciences, Technological University Dublin, Dublin, Ireland
| | - B Lara
- University of Castilla-La Mancha, Institute of Environmental Sciences (Botany), Toledo, Spain
| | - A Serrano-García
- University of Castilla-La Mancha, Institute of Environmental Sciences (Botany), Toledo, Spain
| | - C Galán
- Department of Botany, Ecology and Plant Physiology, Agrifood Campus of International Excellence CeiA3, University of Cordoba, Cordoba, Spain; Andalusian Inter-University Institute for Earth System IISTA, University of Cordoba, Spain
| | - H García-Mozo
- Department of Botany, Ecology and Plant Physiology, Agrifood Campus of International Excellence CeiA3, University of Cordoba, Cordoba, Spain; Andalusian Inter-University Institute for Earth System IISTA, University of Cordoba, Spain
| | - P Alcázar
- Department of Botany, Ecology and Plant Physiology, Agrifood Campus of International Excellence CeiA3, University of Cordoba, Cordoba, Spain; Andalusian Inter-University Institute for Earth System IISTA, University of Cordoba, Spain
| | - R Pérez-Badia
- University of Castilla-La Mancha, Institute of Environmental Sciences (Botany), Toledo, Spain
| | - B Cabezudo
- Department of Botany and Plant Physiology, University of Malaga, Campus de Teatinos s/n, E-29071, Malaga, Spain
| | - J Romero-Morte
- University of Castilla-La Mancha, Institute of Environmental Sciences (Botany), Toledo, Spain
| | - J Rojo
- University of Castilla-La Mancha, Institute of Environmental Sciences (Botany), Toledo, Spain; Department of Pharmacology, Pharmacognosy and Botany, Complutense University, Madrid, Spain
| |
Collapse
|
13
|
Newnham RM. Monitoring airborne pollen in New Zealand. J R Soc N Z 2021; 52:192-211. [PMID: 39439819 PMCID: PMC11486117 DOI: 10.1080/03036758.2021.1967414] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2021] [Accepted: 08/09/2021] [Indexed: 10/20/2022]
Abstract
Against a backdrop of increasing pollen allergy prevalence, this paper reviews the current state of knowledge of allergenic pollen loading in New Zealand. An unavoidable conclusion is that relevant available datasets are fragmentary, incomplete and out-of-date, with the last nationwide survey conducted >30 years ago. In contrast, many other developed regions continue to provide routine, standardised pollen reporting and forecasting to assist with the management and treatment of seasonal allergic rhinitis and related diseases, which affect a large proportion of the population. The data also inform wider research including investigating allergic rhinitis co-association with other health issues and monitoring and projecting the impacts of climate change on pollen production and dispersal; fundamental biological processes that underpin most life on Earth. New Zealand is lagging well behind other regions in realising these benefits by failing to implement a programme of routine aeroallergen monitoring at major population centres. The data generated would also help to answer some pressing questions in relation to respiratory disorder in New Zealand and in particular whether the timing and severity of key pollen allergens are changing and new sources are establishing as a result of climate change.
Collapse
Affiliation(s)
- Rewi M. Newnham
- Schhol of Geography, Environment & Earth Sciences, Victoria University of Wellington, Wellington, New Zealand
| |
Collapse
|
14
|
Holloway T, Miller D, Anenberg S, Diao M, Duncan B, Fiore AM, Henze DK, Hess J, Kinney PL, Liu Y, Neu JL, O'Neill SM, Odman MT, Pierce RB, Russell AG, Tong D, West JJ, Zondlo MA. Satellite Monitoring for Air Quality and Health. Annu Rev Biomed Data Sci 2021; 4:417-447. [PMID: 34465183 DOI: 10.1146/annurev-biodatasci-110920-093120] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Data from satellite instruments provide estimates of gas and particle levels relevant to human health, even pollutants invisible to the human eye. However, the successful interpretation of satellite data requires an understanding of how satellites relate to other data sources, as well as factors affecting their application to health challenges. Drawing from the expertise and experience of the 2016-2020 NASA HAQAST (Health and Air Quality Applied Sciences Team), we present a review of satellite data for air quality and health applications. We include a discussion of satellite data for epidemiological studies and health impact assessments, as well as the use of satellite data to evaluate air quality trends, support air quality regulation, characterize smoke from wildfires, and quantify emission sources. The primary advantage of satellite data compared to in situ measurements, e.g., from air quality monitoring stations, is their spatial coverage. Satellite data can reveal where pollution levels are highest around the world, how levels have changed over daily to decadal periods, and where pollutants are transported from urban to global scales. To date, air quality and health applications have primarily utilized satellite observations and satellite-derived products relevant to near-surface particulate matter <2.5 μm in diameter (PM2.5) and nitrogen dioxide (NO2). Health and air quality communities have grown increasingly engaged in the use of satellite data, and this trend is expected to continue. From health researchers to air quality managers, and from global applications to community impacts, satellite data are transforming the way air pollution exposure is evaluated.
Collapse
Affiliation(s)
- Tracey Holloway
- Nelson Institute Center for Sustainability and the Global Environment, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA; .,Department of Atmospheric and Oceanic Sciences, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA
| | - Daegan Miller
- Nelson Institute Center for Sustainability and the Global Environment, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA;
| | - Susan Anenberg
- Department of Environmental and Occupational Health, George Washington University, Washington, DC 20052, USA
| | - Minghui Diao
- Department of Meteorology and Climate Science, San José State University, San Jose, California 95192, USA
| | - Bryan Duncan
- Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, USA
| | - Arlene M Fiore
- Lamont-Doherty Earth Observatory and Department of Earth and Environmental Sciences, Columbia University, Palisades, New York 10964, USA
| | - Daven K Henze
- Department of Mechanical Engineering, University of Colorado, Boulder, Colorado 80309, USA
| | - Jeremy Hess
- Department of Environmental and Occupational Health Sciences, Department of Global Health, and Department of Emergency Medicine, University of Washington, Seattle, Washington 98105, USA
| | - Patrick L Kinney
- School of Public Health, Boston University, Boston, Massachusetts 02215, USA
| | - Yang Liu
- Gangarosa Department of Environment Health, Rollins School of Public Health, Emory University, Atlanta, Georgia 30322, USA
| | - Jessica L Neu
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California 91109, USA
| | - Susan M O'Neill
- Pacific Northwest Research Station, USDA Forest Service, Seattle, Washington 98103, USA
| | - M Talat Odman
- School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - R Bradley Pierce
- Department of Atmospheric and Oceanic Sciences, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA.,Space Science and Engineering Center, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA
| | - Armistead G Russell
- School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - Daniel Tong
- Atmospheric, Oceanic and Earth Sciences Department, George Mason University, Fairfax, Virginia 22030, USA
| | - J Jason West
- Gillings School of Global Public Health, University of North Carolina, Chapel Hill, North Carolina 27599, USA
| | - Mark A Zondlo
- Department of Civil and Environmental Engineering, Princeton University, Princeton, New Jersey 08544, USA
| |
Collapse
|
15
|
Van Haeften S, Milic A, Addison‐Smith B, Butcher C, Davies JM. Grass Gazers: Using citizen science as a tool to facilitate practical and online science learning for secondary school students during the COVID-19 lockdown. Ecol Evol 2021; 11:3488-3500. [PMID: 33362921 PMCID: PMC7753511 DOI: 10.1002/ece3.6948] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Revised: 09/27/2020] [Accepted: 09/30/2020] [Indexed: 12/11/2022] Open
Abstract
The coronavirus disease of 2019 (COVID-19) pandemic has impacted educational systems worldwide during 2020, including primary and secondary schooling. To enable students of a local secondary school in Brisbane, Queensland, to continue with their practical agricultural science learning and facilitate online learning, a "Grass Gazers" citizen science scoping project was designed and rapidly implemented as a collaboration between the school and a multidisciplinary university research group focused on pollen allergy. Here, we reflect on the process of developing and implementing this project from the perspective of the school and the university. A learning package including modules on pollen identification, tracking grass species, measuring field greenness, using a citizen science data entry platform, forensic palynology, as well as video guides, risk assessment and feedback forms were generated. Junior agriculture science students participated in the learning via online lessons and independent data collection in their own local neighborhood and/or school grounds situated within urban environments. The university research group and school coordinator, operating in their own distributed work environments, had to develop, source, adopt, and/or adapt material rapidly to meet the unique requirements of the project. The experience allowed two-way knowledge exchange between the secondary and tertiary education sectors. Participating students were introduced to real-world research and were able to engage in outdoor learning during a time when online, indoor, desk-based learning dominated their studies. The unique context of restrictions imposed by the social isolation policies, as well as government Public Health and Department of Education directives, allowed the team to respond by adapting teaching and research activity to develop and trial learning modules and citizen science tools. The project provided a focus to motivate and connect teachers, academic staff, and school students during a difficult circumstance. Extension of this citizen project for the purposes of research and secondary school learning has the potential to offer ongoing benefits for grassland ecology data acquisition and student exposure to real-world science.
Collapse
Affiliation(s)
- Shanice Van Haeften
- School of Biomedical ScienceCentre Immunity and Infection Control and Centre for the EnvironmentSchool of Biomedical ScienceQueensland University of TechnologyBrisbaneQldAustralia
| | - Andelija Milic
- School of Biomedical ScienceCentre Immunity and Infection Control and Centre for the EnvironmentSchool of Biomedical ScienceQueensland University of TechnologyBrisbaneQldAustralia
| | - Beth Addison‐Smith
- School of Biomedical ScienceCentre Immunity and Infection Control and Centre for the EnvironmentSchool of Biomedical ScienceQueensland University of TechnologyBrisbaneQldAustralia
| | - Christopher Butcher
- Agricultural Farm and Science Innovation CentreCorinda State High SchoolBrisbaneQldAustralia
| | - Janet Mary Davies
- School of Biomedical ScienceCentre Immunity and Infection Control and Centre for the EnvironmentSchool of Biomedical ScienceQueensland University of TechnologyBrisbaneQldAustralia
- Office of ResearchMetro North Hospital and Health ServiceBrisbaneQldAustralia
| |
Collapse
|
16
|
Campbell BC, Al Kouba J, Timbrell V, Noor MJ, Massel K, Gilding EK, Angel N, Kemish B, Hugenholtz P, Godwin ID, Davies JM. Tracking seasonal changes in diversity of pollen allergen exposure: Targeted metabarcoding of a subtropical aerobiome. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 747:141189. [PMID: 32799020 DOI: 10.1016/j.scitotenv.2020.141189] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 07/21/2020] [Accepted: 07/21/2020] [Indexed: 05/15/2023]
Abstract
The importance of grass pollen to the global burden of allergic respiratory disease is well established but exposure to subtropical and temperate pollens is difficult to discern. Current monitoring of airborne pollen relies on light microscopy, limiting identification of taxa to family level. This informs seasonal fluctuations in pollen aerobiology but restricts analysis of aerobiological composition. We aimed to test the utility of DNA metabarcoding to identify specific taxa contributing to the aerobiome of environmental air samples, using routine pollen and spore monitoring equipment, as well as assess temporal variation of Poaceae pollen across an entire season. Airborne pollen concentrations were determined by light microscopy over two pollen seasons in the subtropical city of Brisbane (27°32'S, 153°00E), Australia. Thirty daily pollen samples were subjected to high throughput sequencing of the plastid rbcL amplicon. Amplicons corresponded to plants observed in the local biogeographical region with up to 3238 different operational taxonomic units (OTU) detected. The aerobiome sequencing data frequently identified pollen to genus levels with significant quantitative differences in aerobiome diversity between the months and seasons detected. Moreover, multiple peaks of Chloridoideae and Panicoideae pollen were evident over the collection period confirming these grasses as the dominant Poaceae pollen source across the season. Targeted high throughput sequencing of routinely collected airborne pollen samples appears to offer utility to track temporal changes in the aerobiome and shifts in pollen exposure. Precise identification of the composition and temporal distributions of airborne pollen is important for tracking biodiversity and for management of allergic respiratory disease.
Collapse
Affiliation(s)
- B C Campbell
- Queensland University of Technology, Brisbane, Australia
| | | | - V Timbrell
- Queensland University of Technology, Brisbane, Australia
| | - M J Noor
- Fatema Jinnah Women University, Rawalpindi, Pakistan
| | - K Massel
- The University of Queensland, Brisbane, Australia
| | - E K Gilding
- The University of Queensland, Brisbane, Australia
| | - N Angel
- Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Australia
| | - B Kemish
- Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Australia
| | - P Hugenholtz
- Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Australia
| | - I D Godwin
- The University of Queensland, Brisbane, Australia
| | - J M Davies
- Queensland University of Technology, Brisbane, Australia; Metro North Hospital and Health Service, Brisbane, Australia.
| |
Collapse
|
17
|
Davies JM, Berman D, Beggs PJ, Ramón GD, Peter J, Katelaris CH, Ziska LH. Global Climate Change and Pollen Aeroallergens: A Southern Hemisphere Perspective. Immunol Allergy Clin North Am 2020; 41:1-16. [PMID: 33228867 DOI: 10.1016/j.iac.2020.09.002] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Climatic change will have an impact on production and release of pollen, with consequences for the duration and magnitude of aeroallergen seasonal exposure and allergic diseases. Evaluations of pollen aerobiology in the southern hemisphere have been limited by resourcing and the density of monitoring sites. This review emphasizes inconsistencies in pollen monitoring methods and metrics used globally. Research should consider unique southern hemisphere biodiversity, climate, plant distributions, standardization of pollen aerobiology, automation, and environmental integration. For both hemispheres, there is a clear need for better understanding of likely influences of climate change and comprehending their impact on pollen-related health outcomes.
Collapse
Affiliation(s)
- Janet M Davies
- School of Biomedical Science, Queensland University of Technology, Herston, Queensland 4006, Australia; Office of Research, Metro North Hospital and Health Service, Herston, Queensland 4006, Australia.
| | - Dilys Berman
- Allergy and Immunology Unit, University of Cape Town Lung Institute, Cape Town 7700, South Africa
| | - Paul J Beggs
- Department of Earth and Environmental Sciences, Faculty of Science and Engineering, Macquarie University, Sydney, New South Wales 2109, Australia
| | - Germán Darío Ramón
- Hospital Italiano Regional DelSur, Bahía Blanca, Buenos Aires, Argentina
| | - Jonny Peter
- Division of Allergy and Clinical Immunology, Department of Medicine, Groote Schuur Hospital, University of Cape Town, 7700
- PO Box 34560, 7937, South Africa; Allergy and Immunology Unit, University of Cape Town Lung Institute, George Street, Cape Town, South Africa
| | | | - Lewis H Ziska
- Mailman School of Public Health, Columbia University, New York, NY 10032, USA
| |
Collapse
|
18
|
Katelaris CH. Climate Change and Extreme Weather Events in Australia: Impact on Allergic Diseases. Immunol Allergy Clin North Am 2020; 41:53-62. [PMID: 33228872 DOI: 10.1016/j.iac.2020.09.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Several climate change-related predictions and observations have been documented for the Australian continent. Extreme weather events such as cycles of severe drought and damaging flooding are occurring with greater frequency and have a severe impact on human health. Two specific aspects of climate change affecting allergic and other respiratory disorders are outlined: firstly, the consequences of extreme weather events and secondly, the change in distribution of airborne allergens that results from various climate change factors.
Collapse
Affiliation(s)
- Constance H Katelaris
- Immunology and Allergy, Western Sydney University; Head of Unit, Campbelltown Hospital, Sydney, New South Wales, Australia.
| |
Collapse
|
19
|
Impact of Plane Tree Abundance on Temporal and Spatial Variations in Pollen Concentration. FORESTS 2020. [DOI: 10.3390/f11080817] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Many ornamental species growing in cities have considerable allergenic potential and pose a risk to allergy sufferers. Such species include members of the genus Platanus, or London plane tree, which is increasingly prevalent in a number of southern European cities. Analysis of airborne pollen concentrations enables biological air quality to be assessed, and also provides information on the local distribution of vegetation. The aim of this study was to analyze trends in annual Platanus pollen concentrations in central Spain and to determine the extent to which they are linked to the presence of this species in urban green spaces. The results point to a correlation between the growing number of plane trees and an increase both in the annual pollen index and in the number of days on which allergy sufferers are at risk. Analysis suggests that variations in the diversity and abundance of allergenic ornamental species in urban green spaces may account for the trends observed in the dynamics and behavior of airborne pollen from these species. The results obtained in studies of this kind should be reflected in urban green-space management plans, in order to decrease the allergenic load and thus both reduce exposure to allergenic pollen and improve air quality in these spaces.
Collapse
|
20
|
Silver JD, Spriggs K, Haberle SG, Katelaris CH, Newbigin EJ, Lampugnani ER. Using crowd-sourced allergic rhinitis symptom data to improve grass pollen forecasts and predict individual symptoms. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 720:137351. [PMID: 32325552 DOI: 10.1016/j.scitotenv.2020.137351] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2019] [Revised: 02/14/2020] [Accepted: 02/14/2020] [Indexed: 06/11/2023]
Abstract
Seasonal allergic rhinitis (AR), also known as hay fever, is a common respiratory condition brought on by a range of environmental triggers. Previous work has characterised the relationships between community-level AR symptoms collected using mobile apps in two Australian cities, Canberra and Melbourne, and various environmental covariates including pollen. Here, we build on these relationships by assessing the skill of models that provide a next-day forecast of an individual's risk of developing AR and that nowcast ambient grass pollen concentrations using crowd-sourced AR symptoms as a predictor. Categorical grass pollen forecasts (low/moderate/high) were made based on binning mean daily symptom scores by corresponding categories. Models for an individual's risk were constructed by forward variable selection, considering environmental, demographic, behaviour and health-related inputs, with non-linear responses permitted. Proportional-odds logistic regression was then applied with the variables selected, modelling the symptom scores on their original five-point scale. AR symptom-based estimates of today's average grass pollen concentration were more accurate than those provided by two benchmark forecasting methods using various metrics for assessing accuracy. Predictions of an individual's next-day AR symptoms rated on a five-point scale were correct in 36% of cases and within one point on this scale in 82% of cases. Both outcomes were significantly better than chance. This large-scale AR symptoms measurement program shows that crowd-sourced symptom scores can be used to predict the daily average grass pollen concentration, as well as provide a personalised AR forecast.
Collapse
Affiliation(s)
- Jeremy D Silver
- School of Earth Sciences, University of Melbourne, Parkville, Victoria, Australia
| | - Kymble Spriggs
- Melbourne Medical School, University of Melbourne, Parkville, Victoria, Australia; Department of Allergy and Immunology, Royal Melbourne Hospital, Parkville, Victoria, Australia
| | - Simon G Haberle
- School of Culture, History and Language, College of Asia and the Pacific, Australian National University Canberra, Canberra, Australian Capital Territory, Australia; ARC Centre of Excellence for Australian Biodiversity and Heritage, Australian National University, Canberra, Australian Capital Territory, Australia
| | | | - Edward J Newbigin
- School of BioSciences, University of Melbourne, Parkville, Victoria, Australia
| | - Edwin R Lampugnani
- School of BioSciences, University of Melbourne, Parkville, Victoria, Australia.
| |
Collapse
|
21
|
Land-Use and Height of Pollen Sampling Affect Pollen Exposure in Munich, Germany. ATMOSPHERE 2020. [DOI: 10.3390/atmos11020145] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Airborne pollen concentrations vary depending on the location of the pollen trap with respect to the pollen sources. Two Hirst-type pollen traps were analyzed within the city of Munich (Germany): one trap was located 2 m above ground level (AGL) and the other one at rooftop (35 m AGL), 4.2 km apart. In general, 1.4 ± 0.5 times higher pollen amounts were measured by the trap located at ground level, but this effect was less than expected considering the height difference between the traps. Pollen from woody trees such as Alnus, Betula, Corylus, Fraxinus, Picea, Pinus and Quercus showed a good agreement between the traps in terms of timing and intensity. Similar amounts of pollen were recorded in the two traps when pollen sources were more abundant outside of the city. In contrast, pollen concentrations from Cupressaceae/Taxaceae, Carpinus and Tilia were influenced by nearby pollen sources. The representativeness of both traps for herbaceous pollen depended on the dispersal capacity of the pollen grains, and in the case of Poaceae pollen, nearby pollen sources may influence the pollen content in the air. The timing of the pollen season was similar for both sites; however, the season for some pollen types ended later at ground level probably due to resuspension processes that would favor recirculation of pollen closer to ground level. We believe measurements from the higher station provides a picture of background pollen levels representative of a large area, to which local sources add additional and more variable pollen amounts.
Collapse
|
22
|
Katz DSW, Dzul A, Kendel A, Batterman SA. Effect of intra-urban temperature variation on tree flowering phenology, airborne pollen, and measurement error in epidemiological studies of allergenic pollen. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 653:1213-1222. [PMID: 30759561 PMCID: PMC6402594 DOI: 10.1016/j.scitotenv.2018.11.020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Revised: 11/01/2018] [Accepted: 11/02/2018] [Indexed: 05/23/2023]
Abstract
Temperature gradients in cities can cause inter-neighborhood differences in the timing of pollen release. However, most epidemiological studies examining allergenic pollen utilize daily measurements from a single pollen monitoring station with the implicit assumption that the measured time series of airborne pollen concentrations applies across the study areas, and that the temporal mismatch between concentrations at the counting station and elsewhere in the study area is negligible. This assumption is tested by quantifying temperature using satellite imagery, observing flowering times of oak (Quercus) and mulberry (Morus) trees at multiple sites, and collecting airborne pollen. Epidemiological studies of allergenic pollen are reviewed and temperatures within their study areas are quantified. In this one-year study, peak oak flowering time was well explained by average February nighttime temperature (R2 = 0.94), which varied by 6 °C across Detroit. This relationship was used to predict flowering phenology across the study region. Peak flowering ranged from April 20-May 13 and predicted a substantial portion of relative airborne oak pollen concentrations in Detroit (R2 = 0.46) and at the regional pollen monitoring station (R2 = 0.61). The regional pollen monitoring station was located in a cooler outlying area where peak flowering occurred around May 12 and peak pollen concentrations were measured on May 15. This provides evidence that the timing of pollen release varies substantially within a metropolitan area and challenges the assumption that pollen measurements at a single location are representative of an entire city. Across the epidemiological studies, 50% of study areas were not within 1 °C (equal to a lag or lead of 4 days in flowering time) of temperatures at the pollen measurement location. Epidemiological studies using a single pollen station as a proxy for pollen concentrations are prone to significant measurement error if the study area is climatically variable.
Collapse
Affiliation(s)
- Daniel S W Katz
- School of Public Health, University of Michigan- Ann Arbor, Ann Arbor, MI, USA.
| | - Andrew Dzul
- Lakeshore Ear, Nose, and Throat, Saint Claire Shores, MI, USA
| | - Amber Kendel
- Lakeshore Ear, Nose, and Throat, Saint Claire Shores, MI, USA
| | - Stuart A Batterman
- School of Public Health, University of Michigan- Ann Arbor, Ann Arbor, MI, USA
| |
Collapse
|
23
|
Kaidashev I, Morokhovets H, Rodinkova V, Bousquet J. Patterns in Google Trends Terms Reporting Rhinitis and Ragweed Pollen Season in Ukraine. Int Arch Allergy Immunol 2019; 178:363-369. [PMID: 30759448 DOI: 10.1159/000495306] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2018] [Accepted: 11/11/2018] [Indexed: 11/19/2022] Open
Abstract
BACKGROUND Google Trends (GT) may represent a new approach to assessing pollen allergy. However, the development of a pan-European sentinel network has raised a problem of translating terms in different languages. A precise definition of the pollen season onset is crucial for the confirmation of a pollen allergy diagnosis and personalized treatment. Ragweed pollen allergy was investigated due to its high allergenicity and wide expansion in Europe. OBJECTIVES The study aimed to examine translations of "ragweed" and "hay fever" in native Cyrillic languages, especially in Ukrainian and Russian, and to compare the seasonality of queries in Ukraine with ragweed and mugwort pollen counts. METHODS We used GT to search Google queries concerning ragweed allergy: "allergy," "hay fever," "running nose," "ragweed," "asthma," and "pollen." The Cyrillic terms in Ukrainian and Russian were used. Pollen collection for 2013-2015 was conducted using volumetric methods. Average daily temperatures were obtained from the website http://gismeteo.ua. Correlations were studied by using Pearson and Spearman tests. RESULTS GT queries profile had the "B" pattern according to the classification developed by Bousquet et al. [Allergy. 2017 Aug; 72(8): 1261-6]. A peak of "ragweed" queries was observed after the maximum of average daily temperature. The terms "allergy," "hay fever," and "ragweed" in Cyrillic are required in Ukraine to calculate the ragweed pollen exposure by GT. The ragweed pollen season started with a concentration of pollen grains of 12.95 m-3. The Artemisia pollen season started between 19 and 25 days before the beginning of the Ambrosia pollen season. CONCLUSIONS GT may be a useful tool in the differentiation of the pollen seasons, especially when they overlap as in the case of Arte misia/Ambrosia. Three terms, "allergy," "hay fever," and "ragweed" (in Cyrillic equivalents), are required in Ukraine to account for ragweed pollen exposure. The combination of GT tools with pollen counts may be used in large-scale epidemiological studies.
Collapse
Affiliation(s)
- Igor Kaidashev
- Ukrainian Medical Stomatological Academy, Department of Internal Medicine No. 3 with Phthisiology, Research Department, Poltava, Ukraine,
| | - Halyna Morokhovets
- Ukrainian Medical Stomatological Academy, Department of Internal Medicine No. 3 with Phthisiology, Research Department, Poltava, Ukraine
| | - Viktoriia Rodinkova
- National Pirogov Memorial Medical University, Pharmacy Department, Vinnytsya, Ukraine
| | - Jean Bousquet
- University Hospital, Montpellier, France.,MACVIA-France, Fondation partenariale FMC VIA-LR, Montpellier, France.,VIMA, INSERM U 1168, VIMA: Ageing and chronic diseases, Epidemiological and public health approaches, Villejuif, France.,Université Versailles St-Quentin-en-Yvelines, UMR-S 1168, Montigny le Bretonneux, France.,Euforea, Brussels, Belgium
| |
Collapse
|
24
|
Thien F, Beggs PJ, Csutoros D, Darvall J, Hew M, Davies JM, Bardin PG, Bannister T, Barnes S, Bellomo R, Byrne T, Casamento A, Conron M, Cross A, Crosswell A, Douglass JA, Durie M, Dyett J, Ebert E, Erbas B, French C, Gelbart B, Gillman A, Harun NS, Huete A, Irving L, Karalapillai D, Ku D, Lachapelle P, Langton D, Lee J, Looker C, MacIsaac C, McCaffrey J, McDonald CF, McGain F, Newbigin E, O'Hehir R, Pilcher D, Prasad S, Rangamuwa K, Ruane L, Sarode V, Silver JD, Southcott AM, Subramaniam A, Suphioglu C, Susanto NH, Sutherland MF, Taori G, Taylor P, Torre P, Vetro J, Wigmore G, Young AC, Guest C. The Melbourne epidemic thunderstorm asthma event 2016: an investigation of environmental triggers, effect on health services, and patient risk factors. Lancet Planet Health 2018; 2:e255-e263. [PMID: 29880157 DOI: 10.1016/s2542-5196(18)30120-7] [Citation(s) in RCA: 131] [Impact Index Per Article: 21.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Revised: 04/28/2018] [Accepted: 05/16/2018] [Indexed: 06/08/2023]
Abstract
BACKGROUND A multidisciplinary collaboration investigated the world's largest, most catastrophic epidemic thunderstorm asthma event that took place in Melbourne, Australia, on Nov 21, 2016, to inform mechanisms and preventive strategies. METHODS Meteorological and airborne pollen data, satellite-derived vegetation index, ambulance callouts, emergency department presentations, and data on hospital admissions for Nov 21, 2016, as well as leading up to and following the event were collected between Nov 21, 2016, and March 31, 2017, and analysed. We contacted patients who presented during the epidemic thunderstorm asthma event at eight metropolitan health services (each including up to three hospitals) via telephone questionnaire to determine patient characteristics, and investigated outcomes of intensive care unit (ICU) admissions. FINDINGS Grass pollen concentrations on Nov 21, 2016, were extremely high (>100 grains/m3). At 1800 AEDT, a gust front crossed Melbourne, plunging temperatures 10°C, raising humidity above 70%, and concentrating particulate matter. Within 30 h, there were 3365 (672%) excess respiratory-related presentations to emergency departments, and 476 (992%) excess asthma-related admissions to hospital, especially individuals of Indian or Sri Lankan birth (10% vs 1%, p<0·0001) and south-east Asian birth (8% vs 1%, p<0·0001) compared with previous 3 years. Questionnaire data from 1435 (64%) of 2248 emergency department presentations showed a mean age of 32·0 years (SD 18·6), 56% of whom were male. Only 28% had current doctor-diagnosed asthma. 39% of the presentations were of Asian or Indian ethnicity (25% of the Melbourne population were of this ethnicity according to the 2016 census, relative risk [RR] 1·93, 95% CI 1·74-2·15, p <0·0001). Of ten individuals who died, six were Asian or Indian (RR 4·54, 95% CI 1·28-16·09; p=0·01). 35 individuals were admitted to an intensive care unit, all had asthma, 12 took inhaled preventers, and five died. INTERPRETATION Convergent environmental factors triggered a thunderstorm asthma epidemic of unprecedented magnitude, tempo, and geographical range and severity on Nov 21, 2016, creating a new benchmark for emergency and health service escalation. Asian or Indian ethnicity and current doctor-diagnosed asthma portended life-threatening exacerbations such as those requiring admission to an ICU. Overall, the findings provide important public health lessons applicable to future event forecasting, health care response coordination, protection of at-risk populations, and medical management of epidemic thunderstorm asthma. FUNDING None.
Collapse
Affiliation(s)
- Francis Thien
- Eastern Health, Melbourne, VIC, Australia; Monash University, Melbourne, VIC, Australia.
| | | | - Danny Csutoros
- Department of Health and Human Services, Melbourne, VIC, Australia
| | - Jai Darvall
- Melbourne Health, Melbourne, VIC, Australia; The University of Melbourne, Melbourne, VIC, Australia
| | - Mark Hew
- Alfred Health, Melbourne, VIC, Australia; Monash University, Melbourne, VIC, Australia
| | - Janet M Davies
- Queensland University of Technology, Brisbane, QLD, Australia; Metro North Hospital and Health Service, Brisbane, QLD, Australia
| | - Philip G Bardin
- Monash Health, Melbourne, VIC, Australia; Monash University, Melbourne, VIC, Australia
| | | | | | - Rinaldo Bellomo
- The University of Melbourne, Melbourne, VIC, Australia; Monash University, Melbourne, VIC, Australia; Austin Health, Melbourne, VIC, Australia
| | | | | | | | | | | | - Jo A Douglass
- Melbourne Health, Melbourne, VIC, Australia; The University of Melbourne, Melbourne, VIC, Australia
| | | | - John Dyett
- Eastern Health, Melbourne, VIC, Australia
| | | | | | | | - Ben Gelbart
- Royal Children's Hospital, Melbourne, VIC, Australia
| | | | | | - Alfredo Huete
- University of Technology Sydney, Sydney, NSW, Australia
| | - Louis Irving
- Melbourne Health, Melbourne, VIC, Australia; The University of Melbourne, Melbourne, VIC, Australia
| | | | - David Ku
- Monash Health, Melbourne, VIC, Australia
| | | | | | - Joy Lee
- Alfred Health, Melbourne, VIC, Australia
| | - Clare Looker
- Department of Health and Human Services, Melbourne, VIC, Australia
| | | | | | - Christine F McDonald
- The University of Melbourne, Melbourne, VIC, Australia; Austin Health, Melbourne, VIC, Australia
| | | | | | - Robyn O'Hehir
- Alfred Health, Melbourne, VIC, Australia; Monash University, Melbourne, VIC, Australia
| | - David Pilcher
- Alfred Health, Melbourne, VIC, Australia; Monash University, Melbourne, VIC, Australia; The Australian and New Zealand Intensive Care Society (ANZICS) Centre for Outcome and Resource Evaluation (CORE), Melbourne, VIC, Australia
| | | | | | | | | | | | | | | | | | | | | | | | | | - Paul Torre
- Environmental Protection Authority Victoria, Melbourne, VIC, Australia
| | | | | | - Alan C Young
- Eastern Health, Melbourne, VIC, Australia; Monash University, Melbourne, VIC, Australia
| | - Charles Guest
- Department of Health and Human Services, Melbourne, VIC, Australia
| |
Collapse
|