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Ali M, Song X, Wang Q, Zhang Z, Zhang M, Ma M, Che J, Li R, Chen X, Tang Z, Tang B, Huang X. Effects of short and long-term thermal exposure on microbial compositions in soils contaminated with mixed benzene and benzo[a]pyrene: A short communication. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:168862. [PMID: 38016555 DOI: 10.1016/j.scitotenv.2023.168862] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2023] [Revised: 10/30/2023] [Accepted: 11/23/2023] [Indexed: 11/30/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) and benzene, toluene, ethylbenzene, and xylene (BTEX) are the most persistent and toxic organic contaminants often found co-contaminated in anthropogenic and petrochemical industrial sites. Therefore, an experiment was performed for the safe biodegradation of benzene and benzo[a]pyrene (BaP) through thermally-enhanced biodegradation, and to explore the influence of elevated thermal treatments on microbial diversity and composition. The results revealed that elevated thermal treatments (15 to 45 °C) significantly enhanced the diversity of both bacteria and fungi. The composition analysis revealed that short-term and long-term elevated temperature conditions can directly enhance the specificity of microorganisms that play a crucial role in the biodegradation of benzene and BaP co-contaminated soil. Moreover, the indirect role of elevated temperature conditions on microbial compositions was through the fluctuations of soil properties, especially soil pH, moisture, TOC, potassium, phosphorous, total Fe, Fe(II), and Fe(III). In addition, the correlation analyses revealed that thermal exposure enhances the synergistic association (fungal-fungal, fungal-bacterial, bacterial-bacterial) of microbes to degrade the toxic contaminants and to cope with harsh environmental conditions. These results concluded that the biodegradation of benzene and BaP co-contamination was efficiently enhanced under the thermally-enhanced biodegradation approach and the elevation of temperature can affect the microbial compositions directly via microbial specificity or indirectly by influencing the soil properties.
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Affiliation(s)
- Mukhtiar Ali
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China; Advanced Water Technology Laboratory, National University of Singapore (Suzhou) Research Institute, Suzhou, 215123, China
| | - Xin Song
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Qing Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Zhuanxia Zhang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Meng Zhang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Min Ma
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Jilu Che
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Rui Li
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xing Chen
- China Construction 8(th) Engineering Division Corp., LTD, Shanghai 200122, China
| | - Zhiwen Tang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Biao Tang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Xiangfeng Huang
- China Construction 8(th) Engineering Division Corp., LTD, Shanghai 200122, China
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Gao H, Wu M, Liu H, Ou Y, Zhang T, Duan X. Unraveling the Positive Effect of Soil Moisture on the Bioaugmentation of Petroleum-Contaminated Soil Using Bioinformatics. MICROBIAL ECOLOGY 2023; 86:2436-2446. [PMID: 37278908 DOI: 10.1007/s00248-023-02245-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Accepted: 05/18/2023] [Indexed: 06/07/2023]
Abstract
Petroleum contamination is a severe threat to the soil environment. Previous studies have demonstrated that petroleum degradation efficiency is promoted by enhancing soil moisture content (MC). However, the effects of MC on soil microbial ecological functions during bioremediation remain unclear. Here, we investigated the impacts of 5% and 15% of moisture contents on petroleum degradation, soil microbial structures and functions, and the related genes using high-throughput sequencing and gene function prediction. Results indicated that petroleum biodegradation efficiency was increased by 8.06% in the soils with 15% MC when compared to that with 5% of MC. The complexity and stability of soil microbial community structures with 15% MC were higher than those in the soils with 5% MC when hydrocarbon-degrading bacterial flora (HDBF) were inoculated into the soils. Fifteen percent of moisture content strengthened the interaction of the bacterial community network and reduced the loss of some key bacteria species including Mycobacterium, Sphingomonas, and Gemmatimonas. Some downregulated gene pathways relating to bioaugmentation were enhanced in the soils with 15% MC. The results suggested that the dynamic balances of microbial communities and the metabolic interactions by 15% MC treatment are the driving forces for the enhancement of bioremediation in petroleum-contaminated soil.
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Affiliation(s)
- Huan Gao
- Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China
| | - Manli Wu
- Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China.
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China.
- Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China.
| | - Heng Liu
- Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China
| | - Yawen Ou
- Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China
| | - Ting Zhang
- Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China
| | - Xuhong Duan
- Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an, 710055, People's Republic of China
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Ali M, Song X, Wang Q, Zhang Z, Che J, Chen X, Tang Z, Liu X. Mechanisms of biostimulant-enhanced biodegradation of PAHs and BTEX mixed contaminants in soil by native microbial consortium. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 318:120831. [PMID: 36509345 DOI: 10.1016/j.envpol.2022.120831] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Revised: 11/29/2022] [Accepted: 12/04/2022] [Indexed: 06/17/2023]
Abstract
Despite the co-occurrence of polycyclic aromatic hydrocarbons (PAHs) and benzene, toluene, ethylbenzene, and xylene (BTEX) in the field, to date, knowledge on the bioremediation of benzene and benzo[a]pyrene (BaP) mixed contaminants is limited. In this study, the mechanisms underlying the biodegradation of benzene and BaP under individual and co-contaminated conditions followed by the enhanced biodegradation using methanol, ethanol, and vegetable oil as biostimulants were investigated. The results demonstrated that the benzene biodegradation was highly reduced under the co-contaminated condition compared to the individual benzene contamination, whereas the BaP biodegradation was slightly enhanced with the co-contamination of benzene. Moreover, biostimulation significantly improved the biodegradation of both contaminants under co-contaminated conditions. A trend of significant reduction in the bioavailable BaP contents was observed in all biostimulant-enhanced groups, implying that the bioavailable BaP was the preferred biodegradable BaP fraction. Furthermore, the enzymatic activity analysis revealed a significant increase in lipase and dehydrogenase (DHA) activities, as well as a reduction in the catalase and polyphenol oxidase, suggesting that the increased hydrolysis of fats and proton transfer, as well as the reduced oxidative stress, contributed to the enhanced benzene and BaP biodegradation in the vegetable oil treatment. In addition, the microbial composition analysis results demonstrated that the enriched functional genera contributed to the increased biodegradation efficiency, and the functional genera in the microbial consortium responded differently to different biostimulants, and competitive growth was observed in the biostimulant-enhanced treatments. In addition, the enrichment of Pseudomonas and Rhodococcus species was noticed during the biostimulation of benzene and BaP co-contamination soil, and was positively correlated with the DHA enzyme activities, indicating that these species encode DHA genes which contributed to the higher biodegradation. In conclusion, multiple lines of evidence were provided to shed light on the mechanisms of biostimulant-enhanced biodegradation of PAHs and BTEX co-contamination with native microbial consortiums.
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Affiliation(s)
- Mukhtiar Ali
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xin Song
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China.
| | - Qing Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Zhuanxia Zhang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jilu Che
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Xing Chen
- China Construction 8th Engineering Division Corp., LTD, Shanghai, 200122, China
| | - Zhiwen Tang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xin Liu
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
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Zhao Z, Oury BM, Xia L, Qin Z, Pan X, Qian J, Luo F, Wu Y, Liu L, Wang W. The ecological response and distribution characteristics of microorganisms and polycyclic aromatic hydrocarbons in a retired coal gas plant post-thermal remediation site. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 857:159314. [PMID: 36220477 DOI: 10.1016/j.scitotenv.2022.159314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Revised: 09/16/2022] [Accepted: 10/05/2022] [Indexed: 06/16/2023]
Abstract
Thermal remediation is one of the most common approaches of removing organic pollutants in the retired contamination sites. However, little is known about the performance of bacterial community characteristics after in situ thermal remediation. In this study, the ecological response and spatial distributional characteristics of microorganisms and polycyclic aromatic hydrocarbons (PAHs) were investigated using a high throughput sequencing method in a retired coal gas plant site after in situ thermal remediation in Nanjing, China. Combination of Venn, clustering-correlation heatmap and two - factor correlation network analysis revealed that, microbial communities were obviously affected and classified by soil depths, temperature, and contamination level, respectively. The common and endemic microorganisms of each group were identified. The relative abundances of Thermaerobacter, Calditerricola, Brevibacillus, Ralstonia and Rhodococcus (aerobic bacteria) gradually declined with the increase of soil depth, while those of Bacillus, Fictibacillus, Paenibacillus, Rheinheimera presented opposite tendency. Some thermophilic degradation bacteria of PAHs, including Thermaerobacter, Calditerricola, Bacillus, Rhodococcus, unclassified_p__Firmicutes, Arthrobacter and Deinococcus, were identified and increased in the abundance at heavily polluted sites. Additionally, Proteobacteria, Bacteroidota, Deinococcota, Chloroflexi, Acidobacteriota, and Actinobacteriota showed negative response to the increase of soil depth, temperature and pollution level, while Firmicutes presented a positive response. This implied that Firmicutes has better stress resistance and adaptability to thermal remediation condition. The key environmental factors affecting microorganism composition and distribution were Temperature, Total nitrogen, Oxidation-Reduction Potential, Organic matters, and PAHs concentrations, which explains the dominant driving mechanism of soil depth, temperature, and contamination level on microbial characteristics in thermal remediation site. Our study could contribute to a better understanding of the resilience and adaptation mechanisms of microbial community at the contaminated site after the in situ thermal remediation.
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Affiliation(s)
- Zhenhua Zhao
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing 210098, China; Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA.
| | - Barry Mody Oury
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing 210098, China
| | - Liling Xia
- Nanjing Vocational University of Industry Technology, Nanjing 210016, China.
| | - Zhirui Qin
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing 210098, China
| | - Xiangyu Pan
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing 210098, China
| | - Jichan Qian
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing 210098, China
| | - Fangzhou Luo
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing 210098, China
| | - Yong Wu
- Nanjing Qingzhan Environmental Engineering CO. Ltd, China
| | - Luqi Liu
- SUMEC Complete Equipment & Engineering CO. LTD, Nanjing 210018, China
| | - Wei Wang
- SUMEC Complete Equipment & Engineering CO. LTD, Nanjing 210018, China
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5
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Hu H, Wang M, Huang Y, Xu Z, Xu P, Nie Y, Tang H. Guided by the principles of microbiome engineering: Accomplishments and perspectives for environmental use. MLIFE 2022; 1:382-398. [PMID: 38818482 PMCID: PMC10989833 DOI: 10.1002/mlf2.12043] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Revised: 08/19/2022] [Accepted: 09/02/2022] [Indexed: 06/01/2024]
Abstract
Although the accomplishments of microbiome engineering highlight its significance for the targeted manipulation of microbial communities, knowledge and technical gaps still limit the applications of microbiome engineering in biotechnology, especially for environmental use. Addressing the environmental challenges of refractory pollutants and fluctuating environmental conditions requires an adequate understanding of the theoretical achievements and practical applications of microbiome engineering. Here, we review recent cutting-edge studies on microbiome engineering strategies and their classical applications in bioremediation. Moreover, a framework is summarized for combining both top-down and bottom-up approaches in microbiome engineering toward improved applications. A strategy to engineer microbiomes for environmental use, which avoids the build-up of toxic intermediates that pose a risk to human health, is suggested. We anticipate that the highlighted framework and strategy will be beneficial for engineering microbiomes to address difficult environmental challenges such as degrading multiple refractory pollutants and sustain the performance of engineered microbiomes in situ with indigenous microorganisms under fluctuating conditions.
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Affiliation(s)
- Haiyang Hu
- State Key Laboratory of Microbial Metabolism, and School of Life Sciences & BiotechnologyShanghai Jiao Tong UniversityShanghaiChina
| | - Miaoxiao Wang
- Department of Environmental Systems ScienceETH ZürichZürichSwitzerland
- Department of Environmental MicrobiologyETH ZürichEawagSwitzerland
| | - Yiqun Huang
- State Key Laboratory of Microbial Metabolism, and School of Life Sciences & BiotechnologyShanghai Jiao Tong UniversityShanghaiChina
| | - Zhaoyong Xu
- State Key Laboratory of Microbial Metabolism, and School of Life Sciences & BiotechnologyShanghai Jiao Tong UniversityShanghaiChina
| | - Ping Xu
- State Key Laboratory of Microbial Metabolism, and School of Life Sciences & BiotechnologyShanghai Jiao Tong UniversityShanghaiChina
| | - Yong Nie
- College of EngineeringPeking UniversityBeijingChina
| | - Hongzhi Tang
- State Key Laboratory of Microbial Metabolism, and School of Life Sciences & BiotechnologyShanghai Jiao Tong UniversityShanghaiChina
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6
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Cantera S, López M, Muñoz R, Lebrero R. Comparative evaluation of bacterial and fungal removal of indoor and industrial polluted air using suspended and packed bed bioreactors. CHEMOSPHERE 2022; 308:136412. [PMID: 36108761 DOI: 10.1016/j.chemosphere.2022.136412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Revised: 08/22/2022] [Accepted: 09/07/2022] [Indexed: 06/15/2023]
Abstract
The abatement of indoor volatile organic compounds (VOCs) represents a major challenge due to their environmental risk, wide nature and concentration variability. Biotechnologies represent a cost-effective, robust and sustainable platform for the treatment of hazardous VOCs at low and fluctuating concentrations. However, they have been scarcely implemented for indoor air purification. Thus, little is known about the influence of the reactor configuration or the VOC nature and concentration variability on the removal, resilience and the microbial population of bioreactor configurations susceptible to be implemented, both in indoors and industrial environments. The present study aims at comparing the removal performance of four VOCs with different hydrophobicity and molecular structure -acetone, n-hexane, α-pinene and toluene-at two inlet concentrations (5 and 400 mg m-3), which mimics the concentrations of contaminated indoor and industrial air. To this aim a stirred tank, flat biofilm and latex-based biocoated flat bioreactor were comparatively evaluated. The results demonstrated the superior performance of the stirred tank reactor for the removal of hydrophilic VOCs at high inlet concentrations, which achieved removals >99% for acetone and toluene. At low concentrations, the removal efficiencies of acetone, toluene and α-pinene were >97% regardless of the bioreactor configuration tested. The most hydrophobic gas, n-hexane, was more efficiently removed in the flat biofilm reactor without latex. The microbial community analyses showed that the presence of VOCs as the only carbon and energy source didn't promote the growth of dominant bacterial members and the populations independently evolved in each reactor configuration and operation mode. The fungal population was more diverse in the biofilm-based bioreactors, although, it was mainly dominated by uncultured fungi from the phylum Cryptomycota.
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Affiliation(s)
- Sara Cantera
- Laboratory of Microbiology, Wageningen University and Research Center, the Netherlands
| | - Martino López
- Department of Chemical Engineering and Environmental Technology, University of Valladolid, Dr. Mergelina s/n., Valladolid, 47011, Spain; Institute of Sustainable Processes, University of Valladolid, Dr. Mergelina s/n., Valladolid, 47011, Spain
| | - Raúl Muñoz
- Department of Chemical Engineering and Environmental Technology, University of Valladolid, Dr. Mergelina s/n., Valladolid, 47011, Spain; Institute of Sustainable Processes, University of Valladolid, Dr. Mergelina s/n., Valladolid, 47011, Spain
| | - Raquel Lebrero
- Department of Chemical Engineering and Environmental Technology, University of Valladolid, Dr. Mergelina s/n., Valladolid, 47011, Spain; Institute of Sustainable Processes, University of Valladolid, Dr. Mergelina s/n., Valladolid, 47011, Spain.
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7
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Zakavi M, Askari H, Shahrooei M. Bacterial diversity changes in response to an altitudinal gradient in arid and semi-arid regions and their effects on crops growth. Front Microbiol 2022; 13:984925. [PMID: 36312986 PMCID: PMC9614161 DOI: 10.3389/fmicb.2022.984925] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2022] [Accepted: 09/16/2022] [Indexed: 12/01/2023] Open
Abstract
The microbiome of soil has a fundamental role in maintaining the health of soil and plants. While the diversity of microbes is one of the most important factors in the environment, little is known about the effects of elevation on the microbiome and the impact of the affected microbiome on plants. The main goal of this study is to expand our knowledge of what happens to the soil bacterial community along an altitudinal gradient and investigate their possibly different impacts on plant growth. Bacteria from soils at various altitudes have been isolated, characterized, and identified by Matrix-Assisted Laser Desorption/Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) to determine the effects of an elevational gradient on the microbiome and plant growth. Furthermore, their effects have been investigated by isolates assessment on maize, wheat, and canola. Based on our results, higher altitude results in a higher diversity of the microbiome and lower bacteria biomass. Bacillus cereus is found in abundance in arid and semi-arid samples. Interestingly, enhanced diversity in higher altitudes shows similarity in response to environmental stress and tolerates these factors well. Furthermore, the inoculation of these bacteria could enhance the overall growth of plants. We prove that bacterial communities could change their biomass and diversity in response to altitude changes. These indicate evolutionary pressure as these bacteria could tolerate stress factors well and have a better relationship with plants.
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Affiliation(s)
- Maryam Zakavi
- Department of Plant Sciences and Biotechnology, Faculty of Life Sciences and Biotechnology, Shahid Beheshti University, Tehran, Iran
| | - Hossein Askari
- Department of Plant Sciences and Biotechnology, Faculty of Life Sciences and Biotechnology, Shahid Beheshti University, Tehran, Iran
| | - Mohammad Shahrooei
- Department of Microbiology and Immunology, Clinical and Diagnostic Immunology, KU Leuven, Leuven, Belgium
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Wu Y, Jiang B, Zou Y, Dong H, Wang H, Zou H. Influence of bacterial community diversity, functionality, and soil factors on polycyclic aromatic hydrocarbons under various vegetation types in mangrove wetlands. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 308:119622. [PMID: 35750309 DOI: 10.1016/j.envpol.2022.119622] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Revised: 05/04/2022] [Accepted: 06/12/2022] [Indexed: 06/15/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are prevalent organic pollutants in coastal ecosystems, particularly in mangrove wetlands. However, it is still largely unclear how PAHs affect the soil bacterial community under various vegetation types in the Greater Bay Area. Here, we selected soil samples from four sites with different vegetation types (native mangrove forest dominated by Kandelia candel, invasive mangrove forest dominated by Sonneratia apetala, unvegetated mudflat, and riverine runoff outlet) in the Qi'ao and Futian Nature Reserves. We investigated the effects of PAHs on soil bacterial community composition and diversity, function, and co-occurrence via 16S rRNA high-throughput sequencing. PAHs obviously reduced soil bacterial community diversity and richness. Based on PICRUSt 2, PAHs demonstrated positive influences on PAHs degradation metabolism related bacterial genes. Meanwhile, we predicted that riverine runoff outlets can potentially degrade PAHs, may donate to sustain healthy mangrove ecosystem. Also, PAHs and total nitrogen (TN) were crucial factors driving the soil bacterial community in Qi'ao sites, whereas in the Futian sites, PAHs and SOC were more important. PAHs, SOC and TN showed negative effects on specific bacteria abundance. Subsequently, environmental factors and PAHs levels influenced the soil bacterial ecological functions community. Co-occurrence network analysis revealed non-random assembly patterns of the bacterial communities. SBR1031 and A4b were the keystone genera and played a crucial role whgich played an irreplaceable role in PAHs degradation in Qi'ao and Futian sites. PAHs inhibited specific microbial activity and metabolism in native mangrove forest, while affects positively to bacterial community in riverine runoff outlet which might profoundly affect the whole soil quality under various vegetation types. Overall, this study might identify existing health problems and provide insights for enhancing protection and utilization management for mangrove ecosystem in the Greater Bay Area.
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Affiliation(s)
- Yining Wu
- Northeast Forestry University, China; Heilongjiang Academy of Sciences Institute of Natural Resources and Ecology, China
| | | | - Yu Zou
- Qiqihar Medical University, China
| | | | - He Wang
- Northeast Forestry University, China
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Chen J, Yang Y, Ke Y, Chen X, Jiang X, Chen C, Xie S. Sulfonamide-metabolizing microorganisms and mechanisms in antibiotic-contaminated wetland sediments revealed by stable isotope probing and metagenomics. ENVIRONMENT INTERNATIONAL 2022; 165:107332. [PMID: 35687947 DOI: 10.1016/j.envint.2022.107332] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Revised: 05/25/2022] [Accepted: 05/31/2022] [Indexed: 06/15/2023]
Abstract
Sulfonamide (SA) antibiotics are ubiquitous pollutants in livestock breeding and aquaculture wastewaters, which increases the propagation of antibiotic resistance genes. Microbes with the ability to degrade SA play important roles in SA dissipation, but their diversity and the degradation mechanism in the field remain unclear. In the present study, we employed DNA-stable isotope probing (SIP) combined with metagenomics to explore the active microorganisms and mechanisms of SA biodegradation in antibiotic-contaminated wetland sediments. DNA-SIP revealed various SA-assimilating bacteria dominated by members of Proteobacteria, such as Bradyrhizobium, Gemmatimonas, and unclassified Burkholderiaceae. Both sulfadiazine and sulfamethoxazole were dissipated mainly through the initial ipso-hydroxylation, and were driven by similar microbes. sadA gene, which encodes an NADH-dependent monooxygenase, was enriched in the 13C heavy DNA, confirming its catalytic capacity for the initial ipso-hydroxylation of SA in sediments. In addition, some genes encoding dioxygenases were also proposed to participate in SA hydroxylation and aromatic ring cleavage based on metagenomics analysis, which might play an important role in SA metabolism in the sediment ecosystem when Proteobacteria was the dominant active bacteria. Our work elucidates the ecological roles of uncultured microorganisms in their natural habitats and gives a deeper understanding of in-situ SA biodegradation mechanisms.
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Affiliation(s)
- Jianfei Chen
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Yuyin Yang
- South China Institute of Environmental Sciences (SCIES), Ministry of Ecology and Environment (MEE), Guangzhou 510655, China
| | - Yanchu Ke
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Xiuli Chen
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Xinshu Jiang
- State Key Joint Laboratory of Environment Simulation and Pollution Control (SKJLESPC), Beijing Key Laboratory for Emerging Organic Contaminants Control (BKLEOC), School of Environment, POPs Research Center, Tsinghua University, Beijing 100084, China
| | - Chao Chen
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Shuguang Xie
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China.
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Sjøholm KK, Dechesne A, Lyon D, Saunders DMV, Birch H, Mayer P. Linking biodegradation kinetics, microbial composition and test temperature - Testing 40 petroleum hydrocarbons using inocula collected in winter and summer. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2022; 24:152-160. [PMID: 34985480 DOI: 10.1039/d1em00319d] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Many factors affect the biodegradation kinetics of chemicals in test systems and the environment. Empirical knowledge is needed on how much test temperature, inoculum, test substances and co-substrates influence the biodegradation kinetics and microbial composition in the test. Water was sampled from the Gudenaa river in winter (2.7 °C) and summer (17 °C) (microbial inoculum) and combined with an aqueous stock solution of >40 petroleum hydrocarbons prepared by passive dosing. This resulted in low-concentration test systems that were incubated for 30 days at 2.7, 12 and 20 °C. Primary biodegradation kinetics, based on substrate depletion relative to abiotic controls, were determined with automated Solid Phase Microextraction coupled to GC/MS. Biodegradation kinetics were remarkably similar for summer and winter inocula when tested at the same temperature, except when cooling summer inoculum to 2.7 °C which delayed degradation relative to winter inoculum. Amplicon sequencing was applied to determine shifts in the microbial composition between season and during incubations: (1) the microbial composition of summer and winter inocula were remarkably similar, (2) the incubation and the incubation temperature had both a clear impact on the microbial composition and (3) the effect of adding >40 petroleum hydrocarbons at low test concentrations was limited but resulted in some proliferation of the known petroleum hydrocarbon degraders Nevskia and Sulfuritalea. Overall, biodegradation kinetics and its temperature dependency were very similar for winter and summer inoculum, whereas the microbial composition was more affected by incubation and test temperature compared to the addition of test chemicals at low concentrations.
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Affiliation(s)
- Karina Knudsmark Sjøholm
- Department of Environmental Engineering, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - Arnaud Dechesne
- Department of Environmental Engineering, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | | | - David M V Saunders
- Concawe, B-1160 Brussels, Belgium
- Shell Health, Shell International B.V., 2596 HR The Hague, The Netherlands
| | - Heidi Birch
- Department of Environmental Engineering, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - Philipp Mayer
- Department of Environmental Engineering, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
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11
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Wang H, Chen P, Zhang S, Jiang J, Hua T, Li F. Degradation of pyrene using single-chamber air-cathode microbial fuel cells: Electrochemical parameters and bacterial community changes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 804:150153. [PMID: 34509835 DOI: 10.1016/j.scitotenv.2021.150153] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Revised: 08/30/2021] [Accepted: 09/01/2021] [Indexed: 06/13/2023]
Abstract
Pyrene, a typical four-ring polycyclic aromatic hydrocarbon, is abundantly present in the environment and is potentially harmful to the human body. In this study, single-chamber air-cathode microbial fuel cells (MFCs) were used to treat pyrene, and the ensuing degradation, electrical parameters, and microbial changes were analyzed. The results showed that MFCs could degrade pyrene, and the maximum degradation rate for 30 mg/L reached 88.1 ± 5.4%. The addition of pyrene reduced the electrical performance of the MFCs and suppressed the power output. Analysis of the anodic microbial community showed that the proportion of Alcaligenes and Stenotrophomonas increased with an increase in pyrene concentration, which may explain the high degradation rate of pyrene.
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Affiliation(s)
- Haonan Wang
- Key Laboratory of Pollution Processes and Environmental Criteria at (Ministry of Education), Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, People's Republic of China
| | - Peng Chen
- Key Laboratory of Pollution Processes and Environmental Criteria at (Ministry of Education), Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, People's Republic of China
| | - Shixuan Zhang
- Key Laboratory of Pollution Processes and Environmental Criteria at (Ministry of Education), Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, People's Republic of China
| | - Jiwei Jiang
- Key Laboratory of Pollution Processes and Environmental Criteria at (Ministry of Education), Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, People's Republic of China
| | - Tao Hua
- Key Laboratory of Pollution Processes and Environmental Criteria at (Ministry of Education), Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, People's Republic of China
| | - Fengxiang Li
- Key Laboratory of Pollution Processes and Environmental Criteria at (Ministry of Education), Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, People's Republic of China.
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12
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Geng S, Qin W, Cao W, Wang Y, Ding A, Zhu Y, Fan F, Dou J. Pilot-scale bioaugmentation of polycyclic aromatic hydrocarbon (PAH)-contaminated soil using an indigenous bacterial consortium in soil-slurry bioreactors. CHEMOSPHERE 2022; 287:132183. [PMID: 34500332 DOI: 10.1016/j.chemosphere.2021.132183] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Revised: 08/08/2021] [Accepted: 09/04/2021] [Indexed: 06/13/2023]
Abstract
Soil-slurry bioreactor based bioremediation of polycyclic aromatic hydrocarbons (PAHs) contaminated soil was studied through laboratory and pilot-scale trials, in which the degradation mechanism was explored. Indigenous PAH-degrading consortium was firstly screened out and it degraded 80.5% of total PAHs in lab-scale bioreactors. Then a pilot-scale trial lasting 410 days was conducted in two bioreactors of 1.5 m3 to examine the operating parameters and validate the optimum running conditions. During the initial 200 days, the crucial running parameters affecting PAH removal were evaluated and selected. Subsequently, an average PAH removal rate of 93.4% was achieved during 15 consecutive batches (210 days) under the optimum running conditions. The kinetic analysis showed that the reactor under optimum conditions achieved the highest PAH degradation rate of 0.1795 day-1 and the shortest half-life of 3.86 days. Notably, efficient mass transfer of PAHs and high biodegradation capability by bioaugmented consortia in soil-slurry bioreactors were two key mechanisms for appreciable PAH removal performance. Under the optimal operating conditions, the degradation rate of low-molecular-weight (LMW) PAHs was significantly higher than high-molecular-weight (HMW) PAHs; when the mass transfer was limited, there was no significant difference between their degradation behaviors. Both microbial co-metabolism and collaborative metabolism might occur when all PAHs demonstrated low degradation rates. The findings provide insightful guidance on the future assessment and remediation practices of PAH-contaminated sites.
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Affiliation(s)
- Shuying Geng
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China
| | - Wei Qin
- School of Environment, Tsinghua University, Beijing, 100084, PR China
| | - Wei Cao
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China
| | - Yingying Wang
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China
| | - Aizhong Ding
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China
| | - Yi Zhu
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China
| | - Fuqiang Fan
- Advanced Institute of Natural Sciences, Beijing Normal University at Zhuhai, Zhuhai, 519087, PR China.
| | - Junfeng Dou
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, PR China.
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13
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Ahmad M, Wang P, Li JL, Wang R, Duan L, Luo X, Irfan M, Peng Z, Yin L, Li WJ. Impacts of bio-stimulants on pyrene degradation, prokaryotic community compositions, and functions. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 289:117863. [PMID: 34352636 DOI: 10.1016/j.envpol.2021.117863] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Revised: 07/26/2021] [Accepted: 07/27/2021] [Indexed: 06/13/2023]
Abstract
Bio-stimulation of the indigenous microbial community is considered as an effective strategy for the bioremediation of polluted environments. This examination explored the near effects of various bio-stimulants on pyrene degradation, prokaryotic community compositions, and functions using 16S rRNA amplicon sequencing and qPCR. At first, the results displayed significant differences (p < 0.05) between the prokaryotic community structures of the control group, PYR (contains pyrene only), and bio-stimulants amended groups. Among the bio-stimulants, biochar, oxalic acid, salicylate, NPK, and ammonium sulfate augmented the pyrene degradation potential of microbial communities. Moreover, the higher abundance of genera, such as Flavobacterium, Hydrogenophaga, Mycobacterium, Rhodococcus, Flavihumibacter, Pseudomonas, Novosphingobium, etc., across the treatments indicated that these genera play a vital role in pyrene metabolism. Based on the higher abundance of GP-RHD and nidA genes, we speculated that Gram-positive prokaryotic communities are more competent in pyrene dissipation than Gram-negative. Furthermore, the marked abundance of nifH, and pqqC genes in the NPK and SA treatments, respectively, suggested that different bio-stimulants might enrich certain bacterial assemblages. Besides, the significant distinctions (p < 0.05) between the bacterial consortia of HA (humic acid) and SA (sodium acetate) groups from NPK, OX (oxalic acid), UR (urea), NH4, and SC (salicylate) groups also suggested that different bio-stimulants might induce distinct ecological impacts influencing the succession of prokaryotic communities in distinct directions. This work provides new insight into the bacterial degradation of pyrene using the bio-stimulation technique. It suggests that it is equally important to investigate the community structure and functions along with studying their impacts on degradation when devising a bio-stimulation technology.
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Affiliation(s)
- Manzoor Ahmad
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Pandeng Wang
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Jia-Ling Li
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Renfei Wang
- Division of Biosciences, University College London, Gower Street, London, WC1E 6BT, UK
| | - Li Duan
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Xiaoqing Luo
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Muhammad Irfan
- Department of Oral Biology, College of Dentistry, University of Florida, Gainesville, FL, United States
| | - Ziqi Peng
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Lingzi Yin
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Wen-Jun Li
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China; State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, PR China.
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14
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Li J, Chen W, Zhou W, Wang Y, Deng M, Zhou S. Synergistic degradation of pyrene by Pseudomonas aeruginosa PA06 and Achromobacter sp. AC15 with sodium citrate as the co-metabolic carbon source. ECOTOXICOLOGY (LONDON, ENGLAND) 2021; 30:1487-1498. [PMID: 32844301 DOI: 10.1007/s10646-020-02268-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 08/10/2020] [Indexed: 06/11/2023]
Abstract
Two pyrene-degrading strains, Pseudomonas aeruginosa PA06 and Achromobacter sp. AC15 were co-incubated in equal proportions as a microbiological consortium and could enhance the degradation of pyrene. The enzymatic activities of the catechol 1,2-dioxygenase (C12O) and 2,3-dioxygenase activities (C23O) were produced complementary expression by P. aeruginosa PA06 and Achromobacter sp. AC15, respectively. Meanwhile, results showed that pyrene degradation was sufficiently promoted in the presence of sodium citrate as a co-metabolic carbon source, likely a result of enhanced biomass and biosurfactant production. The optimized dosage and ideal initial pHs were 1.4 g L-1 and 5.5, respectively. We also analyzed the rate constant of pyrene degradation, cell growth, and enzyme activity. Results show that P. aeruginosa PA06 had a better effect than Achromobacter sp. AC15 in bacterial growth. However, the C23O or C12O activity produced by Achromobacter sp. AC15 continued at a similar or even faster than that of P. aeruginosa PA06. The mixed bacteria had a better effect than any single bacteria, suggesting the strains worked synergistically to enhance the degradation efficiency. In the co-metabolism system of 600 mg/L pyrene and 1.4 g/L sodium citrate, pyrene degradation reached 74.6%, was 1.57 times, 2.06 times, and 3.89 times that of the mix-culture strains, single PA06 and single AC15 without sodium citrate, respectively. Overall, these findings are valuable as a potential tool for the bioremediation of high-molecular-weight PAHs.
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Affiliation(s)
- Jing Li
- School of Environment and Energy, South China University of Technology, Guangzhou Higher Education Mega Center, Guangzhou, 510006, People's Republic of China
- School of Food and Biotechnology, Guangdong Industry Polytechnic, Guangzhou, 510300, People's Republic of China
| | - Weixin Chen
- School of Food and Biotechnology, Guangdong Industry Polytechnic, Guangzhou, 510300, People's Republic of China
| | - Wei Zhou
- Guizhou Academy of Sciences, 1 Shanxi Road, Guiyang, 550001, People's Republic of China
| | - Yao Wang
- School of Food and Biotechnology, Guangdong Industry Polytechnic, Guangzhou, 510300, People's Republic of China
| | - Maocheng Deng
- School of Food and Biotechnology, Guangdong Industry Polytechnic, Guangzhou, 510300, People's Republic of China.
| | - Shaoqi Zhou
- School of Environment and Energy, South China University of Technology, Guangzhou Higher Education Mega Center, Guangzhou, 510006, People's Republic of China.
- Guizhou Academy of Sciences, 1 Shanxi Road, Guiyang, 550001, People's Republic of China.
- State Key Laboratory of Subtropical Building Science, South China University of Technology, Guangzhou, 510641, People's Republic of China.
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15
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Wu Y, Song Q, Wu J, Zhou J, Zhou L, Wu W. Field study on the soil bacterial associations to combined contamination with heavy metals and organic contaminants. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 778:146282. [PMID: 33714815 DOI: 10.1016/j.scitotenv.2021.146282] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Revised: 02/28/2021] [Accepted: 03/01/2021] [Indexed: 06/12/2023]
Abstract
The understanding of soil microbial associations to combined contamination would substantially benefit the restoration of damaged ecosystems, which is currently limited at the field scale. In this study, we investigated the soil bacterial associations to combined contamination with metals (Cd, Cu, Hg, Pb, and Zn), polyaromatic hydrocarbons (PAHs), and polybrominated diphenyl ethers (PBDEs). Samples were collected from field sites under five land-use patterns with electronic waste recycling. Results showed that the contents of Cd (0.22-12.86 mg/kg), Cu (17-14,136 mg/kg), Pb (4.6-77,014 mg/kg), Hg (0.28-22 mg/kg), Zn (26-42,495 mg/kg), PAHs (4.6-1753 μg/kg), and PBDEs (1.9-1079 μg/kg) varied significantly across sites. We observed positive correlations between catalase activity and heavy metals, indicative of a resistance response to the oxidative stress induced by metals. Furthermore, the bacterial community diversity was found to be determined primarily by PBDEs, whereas acenaphthylene, available phosphorus, and 2,2',3,3',4,5,6-heptabrominated diphenyl ether (BDE-183) were the three major drivers affecting community composition. The co-occurrence network constructed for bacterial communities exposed to combined contamination was non-random with scale-free, small-world and modularity features. We further proposed functional roles of the modules including stress resistance, hydrocarbon degradation, and nutrient cycling. Overall, the findings of redundancy analysis, variation partition analysis and the co-occurrence network indicated that soil bacterial community under combined contamination cooperated to survive. Members including Rhodoplanes and Nitrospira were capable of degrading PAHs and PBDEs in various pathways, while others, including Acinetobacter, Citrobacter, and Pseudomonas, reduced the metal toxicity to the community. Our findings provide new insights into the responses of soil bacteria, particularly in terms of inter-specific relationships, under combined contamination at the field scale.
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Affiliation(s)
- Yingxin Wu
- South China Institute of Environmental Sciences, Ministry of Ecology and Environment, 7 West Street, Yuancun, Guangzhou 510655, PR China
| | - Qingmei Song
- South China Institute of Environmental Sciences, Ministry of Ecology and Environment, 7 West Street, Yuancun, Guangzhou 510655, PR China
| | - Jiahui Wu
- South China Institute of Environmental Sciences, Ministry of Ecology and Environment, 7 West Street, Yuancun, Guangzhou 510655, PR China
| | - Jingyan Zhou
- South China Institute of Environmental Sciences, Ministry of Ecology and Environment, 7 West Street, Yuancun, Guangzhou 510655, PR China
| | - Lingli Zhou
- South China Institute of Environmental Sciences, Ministry of Ecology and Environment, 7 West Street, Yuancun, Guangzhou 510655, PR China
| | - Wencheng Wu
- South China Institute of Environmental Sciences, Ministry of Ecology and Environment, 7 West Street, Yuancun, Guangzhou 510655, PR China.
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16
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Wang B, Teng Y, Yao H, Christie P. Detection of functional microorganisms in benzene [a] pyrene-contaminated soils using DNA-SIP technology. JOURNAL OF HAZARDOUS MATERIALS 2021; 407:124788. [PMID: 33321373 DOI: 10.1016/j.jhazmat.2020.124788] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2020] [Revised: 12/03/2020] [Accepted: 12/04/2020] [Indexed: 06/12/2023]
Abstract
DNA-SIP technology was used to detect active BaP-degraders involved in the biodegradation of benzo [a] pyrene (BaP) in two soils separately and in mixture. The lowest BaP removal was observed in red soil, and Ramlibacter (OTU830) belonging to the γ-Proteobacteria was labeled as BaP degrader with 13C-BaP. The highest diversity of degrading microorganisms occurred in the paddy soil with OTUs belonging to Nocardioids, Micromonospora, Saccharothrix, Lysobacter and Methylium present and a BaP removal efficiency of 29.5% after 14 d. BaP degraders in the mixed microbiome of the soil mixture were Burkholderia and Phenylobacterium, together with Nocardioides and Micromonospora as in the paddy soil. These results indicated that the active BaP-degraders in the mixed microbiome were identical to the active BaP-degraders in paddy soil (OTU356 and OTU328), but also unique in the mixed microbiome, such as OTU393 and OTU392. The functional genes of PAH-ring hydroxylating dioxygenases (PAH-RHDα) were expressed and were positively related to the removal of BaP, and the active BaP degrading bacteria included both Gram-positive and Gram-negative bacteria. Saccharothrix, Phylobacterium, Micromonospora and Nocardioids are here reported as BaP degraders for the first time using DNA-SIP.
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Affiliation(s)
- Beibei Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; College of Resources and Environmental Science, Henan Agricultural University, Zhengzhou 450002, China
| | - Ying Teng
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China.
| | - Huaiying Yao
- Ningbo Urban Environment Observation and Research Station, Chinese Academy of Sciences, Ningbo 315800, China
| | - Peter Christie
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
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17
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Sun S, Wang H, Yan K, Lou J, Ding J, Snyder SA, Wu L, Xu J. Metabolic interactions in a bacterial co-culture accelerate phenanthrene degradation. JOURNAL OF HAZARDOUS MATERIALS 2021; 403:123825. [PMID: 33264917 DOI: 10.1016/j.jhazmat.2020.123825] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Revised: 08/03/2020] [Accepted: 08/25/2020] [Indexed: 05/22/2023]
Abstract
A highly eff ;ective phenanthrene (PHE)-degrading co-culture containing Rhodococcus sp. WB9 and Mycobacterium sp. WY10 was constructed and completely degraded 100 mg L-1 PHE within 36 h, showing improved degradation rate compared to their monocultures. In the co-culture, strain WY10 played a predominant role in PHE degradation. 1-hydroxy-2-naphthoic acid was an end-product of PHE degradation by strain WB9 and accumulated in the culture medium to serve as a substrate for strain WY10 growth, thereby accelerating PHE degradation. In turn, strain WY10 degraded PHE and 1-hydroxy-2-naphthoic acid intracellularly to form phthalate and protocatechuate that were exported to the culture medium through efflux transporters. However, strain WY10 cannot take up extracellular phthalate due to the absence of phthalate transporters, restricting phthalate degradation and PHE mineralization. In the co-culture, phthalate and protocatechuate accumulated in the culture medium were taken up and degraded towards TCA cycle by strain WB9. Therefore, the metabolic cross-feeding of strains WB9 and WY10 accelerated PHE degradation and mineralization. These findings exhibiting the synergistic degradation of PHE in the bacterial co-culture will facilitate its bioremediation application.
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Affiliation(s)
- Shanshan Sun
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China
| | - Haizhen Wang
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China.
| | - Kang Yan
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China
| | - Jun Lou
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Vector Biology and Pathogen Control of Zhejiang Province, College of Life Science, Huzhou University, Huzhou 313000, China
| | - Jiahui Ding
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China
| | - Shane A Snyder
- Nanyang Environment and Water Research Institute (NEWRI), Nanyang Technological University, Singapore 637141, Singapore
| | - Laosheng Wu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China; Department of Environmental Sciences, University of California, Riverside, CA 92521, USA
| | - Jianming Xu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China
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18
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Sun Y, Chen W, Wang Y, Guo J, Zhang H, Hu X. Nutrient depletion is the main limiting factor in the crude oil bioaugmentation process. J Environ Sci (China) 2021; 100:317-327. [PMID: 33279045 DOI: 10.1016/j.jes.2020.07.025] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Revised: 07/30/2020] [Accepted: 07/30/2020] [Indexed: 06/12/2023]
Abstract
The biodegradation was considered as the prime mechanism of crude oil degradation. To validate the efficacy and survival of the crude oil-degrading strain in a bioremediation process, the enhanced green fluorescent protein gene (egfp) was introduced into Acinetobacter sp. HC8-3S. In this study, an oil-contaminated sediment microcosm was conducted to investigate the temporal dynamics of the physicochemical characterization and microbial community in response to bacterium amendment. The introduced strains were able to survive, flourish and degrade crude oil quickly in the early stage of the bioremediation. However, the high abundance cannot be maintained due to the ammonium (NH4+-N) and phosphorus (PO43--P) contents decreased rapidly after 15 days of remediation. The sediment microbial community changed considerably and reached relatively stable after nutrient depletion. Therefore, the addition of crude oil and degrading cells did not show a long-time impact on the original microbial communities, and sufficient nitrogen and phosphorus nutrients ensures the survive and activity of degrader. Our studies expand the understanding of the crude oil degradative processes, which will help to develop more rational bioremediation strategies.
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Affiliation(s)
- Yanyu Sun
- Key laboratory of Coastal Biology and Bioresource Utilization, Yantai Institute of Costal Zone Research, Chinese Academy of Sciences, Yantai 264003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China; Centre for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Weiwei Chen
- Key laboratory of Coastal Biology and Bioresource Utilization, Yantai Institute of Costal Zone Research, Chinese Academy of Sciences, Yantai 264003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China; Centre for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yibo Wang
- Key laboratory of Coastal Biology and Bioresource Utilization, Yantai Institute of Costal Zone Research, Chinese Academy of Sciences, Yantai 264003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China; Centre for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jie Guo
- Key laboratory of Coastal Biology and Bioresource Utilization, Yantai Institute of Costal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
| | - Haikun Zhang
- Key laboratory of Coastal Biology and Bioresource Utilization, Yantai Institute of Costal Zone Research, Chinese Academy of Sciences, Yantai 264003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China; Centre for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
| | - Xiaoke Hu
- Key laboratory of Coastal Biology and Bioresource Utilization, Yantai Institute of Costal Zone Research, Chinese Academy of Sciences, Yantai 264003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China; Centre for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China.
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Ma X, Li X, Liu J, Cheng Y, Zou J, Zhai F, Sun Z, Han L. Soil microbial community succession and interactions during combined plant/white-rot fungus remediation of polycyclic aromatic hydrocarbons. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 752:142224. [PMID: 33207520 DOI: 10.1016/j.scitotenv.2020.142224] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2020] [Revised: 09/02/2020] [Accepted: 09/03/2020] [Indexed: 06/11/2023]
Abstract
Despite combined plant/white-rot fungus remediation being effective for remediating polycyclic aromatic hydrocarbon (PAH)-contaminated soil, the complex organismal interactions and their effects on soil PAH degradation remain unclear. Here, we used quantitative PCR, analysis of soil enzyme activities, and sequencing of representative genes to characterize the ecological dynamics of natural attenuation, mycoremediation (MR, using Crucibulum laeve), phytoremediation (PR, using Salix viminalis), and plant-microbial remediation (PMR, using both species) for PAHs in soil for 60 days. On day 60, PMR achieved the highest removal efficiency of all three representative PAHs (65.5%, 47.5%, and 62.4% for phenanthrene, pyrene, and benzo(a)pyrene, respectively) when compared with the other treatments. MR significantly increased the relative abundance of Rhizobium and Bacillus but antagonized the other putative indigenous PAH-degrading bacteria, which were enriched by PR. PR significantly reduced soil nutrients, such as NO3- and NH4+, and available potassium (AK), thereby changing the microbial community composition as reflected by redundancy analysis, significantly reducing the soil bacterial biomass relative to that in other treatments. These disadvantages hampered phenanthrene and pyrene removal. MR provided additional nutrients, which counteracted the nutrient consumption associated with PR, thereby maintaining the microbial community diversity and bacterial biomass of PMR at a level achieved in the NA treatment. Combination remediation therefore overcame the disadvantages of using PR alone. These results indicated that inoculation with the combination of S. viminalis and C. laeve synergistically stimulated the growth of indigenous PAH-degrading microorganisms and maintained bacterial biomass, thus accelerating the dissipation of soil PAHs.
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Affiliation(s)
- Xiaodong Ma
- Key Laboratory of Tree Breeding and Cultivation of the State Forestry Administration, Chinese Academy of Forestry Research Institute of Forestry, Xiangshan Road, Haidian District, Beijing 100091, China
| | - Xia Li
- Key Laboratory of Tree Breeding and Cultivation of the State Forestry Administration, Chinese Academy of Forestry Research Institute of Forestry, Xiangshan Road, Haidian District, Beijing 100091, China; College of Agriculture and Bioengineering, Heze University, University Road, Mudan District, Heze 274000, Shandong, China
| | - Junxiang Liu
- Key Laboratory of Tree Breeding and Cultivation of the State Forestry Administration, Chinese Academy of Forestry Research Institute of Forestry, Xiangshan Road, Haidian District, Beijing 100091, China
| | - Yunhe Cheng
- Beijing Academy of Forestry and Pomology Sciences, Shuguanghuayuanzhong Road, Haidian District, Beijing 100097, China
| | - Junzhu Zou
- Key Laboratory of Tree Breeding and Cultivation of the State Forestry Administration, Chinese Academy of Forestry Research Institute of Forestry, Xiangshan Road, Haidian District, Beijing 100091, China
| | - Feifei Zhai
- School of Architectural and Artistic Design, Henan Polytechnic University, Jiefang Middle Road, Jiaozuo, Henan 454000, China
| | - Zhenyuan Sun
- Key Laboratory of Tree Breeding and Cultivation of the State Forestry Administration, Chinese Academy of Forestry Research Institute of Forestry, Xiangshan Road, Haidian District, Beijing 100091, China
| | - Lei Han
- Key Laboratory of Tree Breeding and Cultivation of the State Forestry Administration, Chinese Academy of Forestry Research Institute of Forestry, Xiangshan Road, Haidian District, Beijing 100091, China.
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Tang X, Jiang J, Huang Z, Wu H, Wang J, He L, Xiong F, Zhong R, Liu J, Han Z, Tang R, He L. Sugarcane/peanut intercropping system improves the soil quality and increases the abundance of beneficial microbes. J Basic Microbiol 2021; 61:165-176. [PMID: 33448033 DOI: 10.1002/jobm.202000750] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Accepted: 01/02/2021] [Indexed: 11/11/2022]
Abstract
Sugarcane/peanut intercropping is a highly efficient planting pattern in South China. However, the effects of sugarcane/peanut intercropping on soil quality need to be clarified. This study characterized the soil microbial community and the soil quality in sugarcane/peanut intercropping systems by the Illumina MiSeq platform. The results showed that the intercropping sugarcane (IS) system significantly increased the total N (TN), available N (AN), available P (AP), pH value, and acid phosphatase activity (ACP), but it had little effect on the total P (TP), total K (TK), available K (AK), organic matter (OM), urease activity, protease activity, catalase activity, and sucrase activity, compared with those in monocropping sugarcane (MS) and monocropping peanut (MP) systems. Both intercropping peanut (IP) and IS soils contained more bacteria and fungi than soils in the MP and MS fields, and the microbes identified were mainly Chloroflexi and Acidobacteria, respectively. Intercropping significantly increased the number of unique microbes in IS soils (68 genera), compared with the numbers in the IP (14), MS (17), and MP (16) systems. The redundancy analysis revealed that the abundances of culturable Acidobacteriaceae subgroup 1, nonculturable DA111, and culturable Acidobacteria were positively correlated with the measured soil quality in the intercropping system. Furthermore, the sugarcane/peanut intercropping significantly increased the economic benefit by 87.84% and 36.38%, as compared with that of the MP and MS, respectively. These results suggest that peanut and sugarcane intercropping increases the available N and P content by increasing the abundance of rhizospheric microbes, especially Acidobacteriaceae subgroup 1, DA111, and Acidobacteria.
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Affiliation(s)
- Xiumei Tang
- Agricultural College of Guangxi University, Nanning, Guangxi, China.,Cash Crops Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Jing Jiang
- Cash Crops Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Zhipeng Huang
- Cash Crops Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Haining Wu
- Cash Crops Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Jin Wang
- Agricultural Resource and Environment Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Liangqiong He
- Cash Crops Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Faqian Xiong
- Cash Crops Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Ruichun Zhong
- Cash Crops Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Jing Liu
- Cash Crops Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Zhuqiang Han
- Cash Crops Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Ronghua Tang
- Cash Crops Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Longfei He
- Agricultural College of Guangxi University, Nanning, Guangxi, China
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Hao DC, Li XJ, Xiao PG, Wang LF. The Utility of Electrochemical Systems in Microbial Degradation of Polycyclic Aromatic Hydrocarbons: Discourse, Diversity and Design. Front Microbiol 2020; 11:557400. [PMID: 33193139 PMCID: PMC7644954 DOI: 10.3389/fmicb.2020.557400] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Accepted: 09/25/2020] [Indexed: 12/27/2022] Open
Abstract
Polycyclic aromatic hydrocarbons (PAHs), especially high molecular weight PAHs, are carcinogenic and mutagenic organic compounds that are difficult to degrade. Microbial remediation is a popular method for the PAH removal in diverse environments and yet it is limited by the lack of electron acceptors. An emerging solution is to use the microbial electrochemical system, in which the solid anode is used as an inexhaustible electron acceptor and the microbial activity is stimulated by biocurrent in situ to ensure the PAH removal and avoid the defects of bioremediation. Based on the extensive investigation of recent literatures, this paper summarizes and comments on the research progress of PAH removal by the microbial electrochemical system of diversified design, enhanced measures and functional microorganisms. First, the bioelectrochemical degradation of PAHs is reviewed in separate and mixed PAH degradation, and the removal performance of PAHs in different system configurations is compared with the anode modification, the enhancement of substrate and electron transfer, the addition of chemical reagents, and the combination with phytoremediation. Second, the key functional microbiota including PAH degrading microbes and exoelectrogens are overviewed as well as the reduced microbes without competitive advantage. Finally, the typical representations of electrochemical activity especially the internal resistance, power density and current density of systems and influence factors are reviewed with the correlation analysis between PAH removal and energy generation. Presently, most studies focused on the anode modification in the bioelectrochemical degradation of PAHs and actually more attentions need to be paid to enhance the mass transfer and thus larger remediation radius, and other smart designs are also proposed, especially that the combined use of phytoremediation could be an eco-friendly and sustainable approach. Additionally, exoelectrogens and PAH degraders are partially overlapping, but the exact functional mechanisms of interaction network are still elusive, which could be revealed with the aid of advanced bioinformatics technology. In order to optimize the efficacy of functional community, more advanced techniques such as omics technology, photoelectrocatalysis and nanotechnology should be considered in the future research to improve the energy generation and PAH biodegradation rate simultaneously.
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Affiliation(s)
- Da-Cheng Hao
- School of Environmental and Chemical Engineering, Dalian Jiaotong University, Dalian, China
| | - Xiao-Jing Li
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs/Key Laboratory of Original Agro-Environmental Pollution Prevention and Control, MARA/Tianjin Key Laboratory of Agro-Environment and Agro-Product Safety, Tianjin, China
| | - Pei-Gen Xiao
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Beijing, China
| | - Lian-Feng Wang
- School of Environmental and Chemical Engineering, Dalian Jiaotong University, Dalian, China
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22
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Geng S, Cao W, Yuan J, Wang Y, Guo Y, Ding A, Zhu Y, Dou J. Microbial diversity and co-occurrence patterns in deep soils contaminated by polycyclic aromatic hydrocarbons (PAHs). ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 203:110931. [PMID: 32684516 DOI: 10.1016/j.ecoenv.2020.110931] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 06/18/2020] [Accepted: 06/20/2020] [Indexed: 06/11/2023]
Abstract
Numerous studies have enriched our knowledge of the microbial community composition and metabolic versatility of contaminated soil. However, there remains a substantial gap regarding the bioassembly patterns of the indigenous microbial community distribution in contaminated deep soils. Herein, the indigenous microbial community structure diversity, function, and co-occurrence relationships in aged PAH-contaminated deep soil collected from an abandoned chemical facility were investigated using high-throughput sequencing. The results showed that the dominant phyla in all samples were responsible for PAH degradation and included Proteobacteria (20.86%-81.37%), Chloroflexi (2.03%-28.44%), Firmicutes (3.06%-31.16%), Actinobacteria (2.92%-11.91%), Acidobacteria (0.41%-12.68%), and Nitrospirae (0.81%-9.21%). Eighty biomarkers were obtained by linear discriminant analysis of effect size (LEfSe), and most of these biomarkers were PAH degraders. Functional predictions using Tax4Fun indicated that the aged contaminated soil has the potential for PAH degradation. Statistical analysis showed that in contrast with the PAH concentration, edaphic properties (nutrients and pH) were significantly correlated (r > 0.25, P < 0.01) with the bacterial community and functional composition. Co-occurrence network analysis (modularity index of 0.781) revealed non-random assembly patterns of the bacterial communities in the PAH-contaminated soils. The modules in the network were mainly involved in carbon and nitrogen cycles, organic substance degradation, and biological electron transfer processes. Microbes from the same module had strong ecological linkages. Additionally, SAR202 clade, Thermoanaerobaculum, Nitrospira, and Xanthomonadales, which were identified as keystone species, played an irreplaceable role in the network. Overall, our results suggested that environmental factors such as nutrients and pH, together with ecological function, are the main factors driving the assembly of microbial communities in aged PAH-contaminated deep soils.
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Affiliation(s)
- Shuying Geng
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, China
| | - Wei Cao
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, China
| | - Jing Yuan
- National Engineering Laboratory for Lake Pollution Control and Ecological Restoration, Chinese Research Academy of Environmental Sciences, Beijing, 100012, China
| | - Yingying Wang
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, China
| | - Yanqing Guo
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, China
| | - Aizhong Ding
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, China
| | - Yi Zhu
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, China.
| | - Junfeng Dou
- Engineering Research Center of Ministry of Education on Groundwater Pollution Control and Remediation, College of Water Sciences, Beijing Normal University, Beijing, 100875, China.
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Guo J, Wen X, Yang J, Fan T. Removal of benzo(a)pyrene in polluted aqueous solution and soil using persulfate activated by corn straw biochar. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2020; 272:111058. [PMID: 32669257 DOI: 10.1016/j.jenvman.2020.111058] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Revised: 07/02/2020] [Accepted: 07/04/2020] [Indexed: 06/11/2023]
Abstract
An activator, corn straw biochar, was produced and applied in persulfate-based oxidation to remove benzo(a)pyrene (BaP) in polluted aqueous solution and soil. Polluted aqueous solution remediation results showed that at pH 7, approximately 88.4% of BaP was removed by 10 mM of persulfate activated by 1.6 g/L of biochar, and degradation played a dominant role. Polluted soil remediation results demonstrated that the activated persulfate solution (at 9 g/L) by biochar (at 3 wt% of soil) can remove 93.2% of BaP. In remediation of BaP-polluted soil, increasing biochar dosage and persulfate concentration accelerated BaP degradation to some extent, while excessive biochar or persulfate inhibited the degradation of BaP probably due to the unnecessary SO4- consumption. The biochar-activated persulfate oxidation reflected a good performance in tolerating the influences of background electrolytes (such as HCO3-, Cl-, and humic acid (HA)) in soil on BaP remediation. In addition, in the removal of BaP by the oxidation systems activated by biochar, persulfate was proved as a superior oxidant compared to peroxymonosulfate and H2O2, and the removal efficiencies of BaP were 93.2%, 86.5%, and 84.4% under the same treatment condition. To sum up, the biochar-activated persulfate oxidation would be a potential application in remediation of BaP-polluted aqueous solution and soil.
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Affiliation(s)
- Junyuan Guo
- College of Resources and Environment, Chengdu University of Information Technology, Chengdu, Sichuan, 610225, China.
| | - Xiaoying Wen
- College of Resources and Environment, Chengdu University of Information Technology, Chengdu, Sichuan, 610225, China
| | - Jiawei Yang
- National Institute of Measurement and Testing Technology, Chengdu, Sichuan, 610021, China
| | - Ting Fan
- Chengdu Institute of Organic Chemistry, Chinese Academy of Sciences, Chengdu, Sichuan, 610041, China
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Zhou L, Wang X, Ren W, Xu Y, Zhao L, Zhang Y, Teng Y. Contribution of autochthonous diazotrophs to polycyclic aromatic hydrocarbon dissipation in contaminated soils. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 719:137410. [PMID: 32120099 DOI: 10.1016/j.scitotenv.2020.137410] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2019] [Revised: 02/12/2020] [Accepted: 02/16/2020] [Indexed: 06/10/2023]
Abstract
Understanding the role played by autochthonous functional microbes involved in the biotransformation of pollutants would help optimize bioremediation performance at contaminated sites. However, our knowledge of the remediation potential of indigenous diazotrophs in contaminated soils remains inadequate. Using a microcosm experiment, soil nitrogen fixation activity was manipulated by molybdenum (Mo) and tungsten (W), and their effect on the removal of polycyclic aromatic hydrocarbons (PAHs) was determined in agricultural and industrial soils. Results showed that after 42 days of incubation, PAH dissipation efficiency was significantly enhanced by 1.06-fold in 600 μg kg-1 Mo-treated agricultural soil, compared with that in the control. For the industrial soil, 1200 μg kg-1 Mo treatment significantly promoted PAH removal by 90.76% in 21 days, whereas no significant change was observed between treatments and control at the end of the incubation period. W also exerted a similar effect on PAH dissipation. The activity and gene abundance of nitrogenase were also increased under Mo/W treatments in the two soils. Spearman's correlation analysis further indicated that removal of PAHs was positively correlated with nitrogenase activity in soil, which could be due to the elevated abundances of PAH-degrading genes (PAH-RHDα) in these treatments. Our results suggest the importance of autochthonous diazotrophs in PAH-contaminated soils, which indicates a feasible and environmentally friendly biostimulation strategy of manipulating nitrogen fixation capacity.
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Affiliation(s)
- Lu Zhou
- School of Environmental Science and Engineering, Nanjing Tech University, Nanjing 211800, China; Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Xiaomi Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Wenjie Ren
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Yongfeng Xu
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Ling Zhao
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Yufeng Zhang
- School of Environmental Science and Engineering, Nanjing Tech University, Nanjing 211800, China.
| | - Ying Teng
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China.
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Bao H, Wang J, Zhang H, Li J, Li H, Wu F. Effects of biochar and organic substrates on biodegradation of polycyclic aromatic hydrocarbons and microbial community structure in PAHs-contaminated soils. JOURNAL OF HAZARDOUS MATERIALS 2020; 385:121595. [PMID: 31744730 DOI: 10.1016/j.jhazmat.2019.121595] [Citation(s) in RCA: 78] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2019] [Revised: 10/19/2019] [Accepted: 11/01/2019] [Indexed: 06/10/2023]
Abstract
A incubation experiment was conducted to investigate whether combined amendment of biochar (B) and compost (CP), mushroom residue (M) and corn straw (Y) could enhance biodegradation of polycyclic aromatic hydrocarbons (PAHs) in contaminated soils. After 77 days of incubation, both B + M and B + Y significantly (p < 0.01) increased removal rate of PAHs compared with amendment of biochar alone. However, B+CP resulted in a significant (p < 0.01) decreasing of PAHs removal. Compared with no biochar and no organic substrates addition (CK) and B, both B+M and B+Y significantly (p < 0.01) enhanced concentrations of dissolved organic carbon (DOC) and were favorable for the microbial growth reflected by microbial biomass carbons (MBC) and emission of carbon dioxide. Redundancy analysis (RDA) indicated that B + CP, B + M and B + Y separated the bacterial community compared with CK and B. However, the community composition structure in B + CP was different from that of B + M and B + Y. Moreover, the abundance of some PAHs degraders and PAH degradation genes predicted by PICRUSt software was promoted by B + M or B + Y, whereas that was inhibited under B + CP. The present study suggested that both B + M and B + Y could accelerate biodegradation of PAHs mainly through increasing the concentration of DOC and the abundances of microbial PAH degraders in soils.
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Affiliation(s)
- Huanyu Bao
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agricultureand Rural Affairs, Yangling 712100, Shaanxi, PR China; State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology (SKLUWRE, HIT), Harbin 150090, PR China
| | - Jinfeng Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agricultureand Rural Affairs, Yangling 712100, Shaanxi, PR China
| | - He Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agricultureand Rural Affairs, Yangling 712100, Shaanxi, PR China
| | - Jiao Li
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agricultureand Rural Affairs, Yangling 712100, Shaanxi, PR China
| | - Hui Li
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, Department of Ecology, College of Life Science and Technology, Jinan University, Guangzhou 510632, PR China.
| | - Fuyong Wu
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agricultureand Rural Affairs, Yangling 712100, Shaanxi, PR China.
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Carbon sources that enable enrichment of 1,4-dioxane-degrading bacteria in landfill leachate. Biodegradation 2019; 31:23-34. [PMID: 31520343 DOI: 10.1007/s10532-019-09891-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2019] [Accepted: 09/10/2019] [Indexed: 10/26/2022]
Abstract
1,4-Dioxane (DX) is a recalcitrant cyclic ether that has gained attention as an emerging pollutant in the aquatic environment. Enrichment of indigenous DX-degrading bacteria, which are considered to be minor populations even in DX-impacted environments, is the key for efficient biological DX removal. Therefore, this study aimed to explore carbon sources applicable for the enrichment of DX-degrading bacteria present in landfill leachate, which is a potential source of DX pollution. Microorganisms collected from landfill leachate were cultivated on six different carbon sources (DX, tetrahydrofuran (THF), 1,3,5-trioxane (TX), ethylene glycol (EG), diethylene glycol (DEG), and 1,4-butanediol (BD)) in a sequential batch mode. Consequently, enrichment cultures cultivated on THF in addition to DX improved the DX degradation ability compared to that of the original leachate sample, while those on the other test carbon sources did not. The results indicated that THF can be an alternative carbon source to enrich DX-degrading bacteria, and that TX, EG, DEG and BD are not applicable to concentrate DX-degrading bacteria in complex microbial consortia. In addition, sequencing analyses of 16S rRNA and soluble di-iron monooxygenase (SDIMO) genes revealed notable dominance of thm/dxm genes involved in group 5 SDIMO both in DX- and THF-enrichment cultures. The analysis also showed a predominance of Pseudonocardia in THF-enrichment culture, suggesting that Pseudonocardia harboring thm/dxm genes contributes to enhanced DX degradation in THF-enrichment culture.
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27
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Hou S, Wu B, Peng D, Wang Z, Wang Y, Xu H. Remediation performance and mechanism of hexavalent chromium in alkaline soil using multi-layer loaded nano-zero-valent iron. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 252:553-561. [PMID: 31181500 DOI: 10.1016/j.envpol.2019.05.083] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Revised: 04/25/2019] [Accepted: 05/16/2019] [Indexed: 05/27/2023]
Abstract
Remediation of soil chromium (Cr) pollution is becoming more and more urgent. In this study, a multi-loaded nano-zero-valent iron (nZVI) material (CNH) was prepared by carboxymethyl cellulose (CMC) and humic acid (HA) as dispersant and support agent, respectively, and the remediation effect of CNH, HA and CN (CNH without HA) for Cr contaminated soil was investigated within 90 d cycle. After 7 d treatment of CNH, the HOAc-extractable Cr decreased significantly. After the 90 d remediation, the HOAc-extractable Cr decreased most in the treatment of 3% CNH, about 74.48% lower than control. All treatments eventually caused different decline of soil pH, with a range of 0.12-0.54, in which the CNH treatment group had the least depression. HA loading significantly weakened the toxicity of nZVI, resulting in the higher soil microbial quantity and enzyme activities compared with CN. Additionally, the improvement of soil microecology by CNH and HA was positively correlated with the ratio of application, while CN was negatively correlated (except FDA enzyme activity) with these indexes. These results emphasized the potential of the synthesized CNH as a promising material to remediate Cr contaminated soil. Furthermore, details of possible mechanistic insight into the Cr remediation were carefully discussed.
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Affiliation(s)
- Siyu Hou
- Key Laboratory of Bio-Resource and Eco-Evironment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, PR China
| | - Bin Wu
- Key Laboratory of Bio-Resource and Eco-Evironment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, PR China
| | - Dinghua Peng
- Key Laboratory of Bio-Resource and Eco-Evironment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, PR China
| | - Ziru Wang
- Key Laboratory of Bio-Resource and Eco-Evironment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, PR China
| | - Yiyang Wang
- Key Laboratory of Bio-Resource and Eco-Evironment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, PR China
| | - Heng Xu
- Key Laboratory of Bio-Resource and Eco-Evironment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, PR China.
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28
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Effects of Agricultural Management on Rhizosphere Microbial Structure and Function in Processing Tomato Plants. Appl Environ Microbiol 2019; 85:AEM.01064-19. [PMID: 31175190 DOI: 10.1128/aem.01064-19] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Accepted: 06/02/2019] [Indexed: 12/13/2022] Open
Abstract
Agricultural management practices affect bulk soil microbial communities and the functions they carry out, but it remains unclear how these effects extend to the rhizosphere in different agroecosystem contexts. Given close linkages between rhizosphere processes and plant nutrition and productivity, understanding how management practices impact this critical zone is of great importance to optimize plant-soil interactions for agricultural sustainability. A comparison of six paired conventional-organic processing tomato farms was conducted to investigate relationships between management, soil physicochemical parameters, and rhizosphere microbial community composition and functions. Organically managed fields were higher in soil total N and NO3-N, total and labile C, plant Ca, S, and Cu, and other essential nutrients, while soil pH was higher in conventionally managed fields. Differential abundance, indicator species, and random forest analyses of rhizosphere communities revealed compositional differences between organic and conventional systems and identified management-specific microbial taxa. Phylogeny-based trait prediction showed that these differences translated into more abundant pathogenesis-related gene functions in conventional systems. Structural equation modeling revealed a greater effect of soil biological communities than physicochemical parameters on plant outcomes. These results highlight the importance of rhizosphere-specific studies, as plant selection likely interacts with management in regulating microbial communities and functions that impact agricultural productivity.IMPORTANCE Agriculture relies, in part, on close linkages between plants and the microorganisms that live in association with plant roots. These rhizosphere bacteria and fungi are distinct from microbial communities found in the rest of the soil and are even more important to plant nutrient uptake and health. Evidence from field studies shows that agricultural management practices such as fertilization and tillage shape microbial communities in bulk soil, but little is known about how these practices affect the rhizosphere. We investigated how agricultural management affects plant-soil-microbe interactions by comparing soil physical and chemical properties, plant nutrients, and rhizosphere microbial communities from paired fields under organic and conventional management. Our results show that human management effects extend even to microorganisms living in close association with plant roots and highlight the importance of these bacteria and fungi to crop nutrition and productivity.
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