Response of denitrification in paddy soils with different nitrification rates to soil moisture and glucose addition

Long-term toxic effects of iron-based metal-organic framework nanopesticides on earthworm-soil microorganism interactions in the soil environment

With the widespread use of controlled-release nanopesticides in field conditions, the interactions between these nanopesticides and biological systems are complex and highly uncertain. The toxicity of iron-based metal organic frameworks (CF@MIL-101-SL) loaded with chlorfenapyr (CF) to terrestrial invertebrate earthworms in filter paper and soil environments and the potential mechanisms of interactions in the nanopesticide-earthworm-cornfield soil microorganism system were investigated for the first time. The results showed that CF@MIL-101-SL was more poisonous to earthworms in the contact filter paper test than suspension concentrate of CF (CF-SC), and conversely, CF@MIL-101-SL was less poisonous to earthworms in the soil test. In the soil environment, the CF@MIL-101-SL treatment reduced oxidative stress and the inhibition of detoxifying enzymes, and reduced tissue and cellular substructural damage in earthworms compared to the CF-SC treatment. Long-term treatment with CF@MIL-101-SL altered the composition and abundance of microbial communities with degradative functions in the earthworm intestine and soil and affected the soil nitrogen cycle by modulating the composition and abundance of nitrifying and denitrifying bacterial communities in the earthworm intestine and soil, confirming that soil microorganisms play an important role in reducing the toxicity of CF@MIL-101-SL to earthworms. In conclusion, this study provides new insights into the ecological risks of nanopesticides to soil organisms.

Effect of tillage state of paddy soils with heavy metal pollution on the nosZ gene of N2O reductase

Paddy soils are an important source of atmospheric nitrous oxide (N2O). However, numerous studies have focused on N2O production during the soil tillage period, neglecting the N2O production during the dry fallow period. In this study, we conducted an incubation experiment using the acetylene inhibition technique to investigate N2O emission and reduction rates of paddy soil profiles (0-1 m) from Guangdong Province and Jinlin Province in China, with different heavy-metal pollution levels. The abundance and community structures of denitrifying bacteria were determined via quantitative-PCR and Illumina MiSeq sequencing of nosZ, nirK, and nirS genes. Our results showed that the potential N2O emission rate, N2O production rate, and denitrification rate have decreased with increasing soil vertical depth and heavy-metal pollution. More importantly, we found that the functional gene type of N2O reductase switched with the tillage state of paddy soils, which clade Ⅱ nosZ genes were the dominant gene during the tillage period, while clade Ⅰ nosZ genes were the dominant gene during the dry fallow period. The heavy-metal pollution has less effect on the niche differentiation of the nosZ gene. The N2O emission rate was significantly regulated by the genus Bradyhizobium, which contains both N2O reductase and nitrite reductase genes. Our findings suggests that the nosZ gene of N2O reductase can significantly impact the N2O emission from paddy soils.

Incubation study on remediation of nitrate-contaminated soil by Chroococcus sp

The possibility of using the non-nitrogen-fixing cyanobacterium (Chroococcus sp.) for the reduction of soil nitrate contamination was tested through Petri dish experiments. The application of 0.03, 0.05 and 0.08 mg/cm2 Chroococcus sp. efficiently removed NO3--N from the soil through assimilation of nitrate nutrient and promotion of soil denitrification. At the optimal application dose of 0.05 mg/cm2, 44.06%, 36.89% and 36.17% of NO3--N were removed at initial NO3--N concentrations of 60, 90 and 120 mg/kg, respectively. The polysaccharides released by Chroococcus sp. acted as carbon sources for bacterial denitrification and facilitated the reduction of soil salinity, which significantly (p < 0.05) stimulated the growth of denitrifying bacteria (Hyphomicrobium denitrificans and Hyphomicrobium sp.) as well as significantly (p < 0.05) elevated the activities of nitrate reductase and nitrite reductase by 1.07-1.23 and 1.15-1.22 times, respectively. The application of Chroococcus sp. promoted the dominance of Nocardioides maradonensis in soil microbial community, which resulted in elevated phosphatase activity and increased available phosphorus content. The application of Chroococcus sp. positively regulated the growth of soil bacteria belonging to the genera Chitinophaga, Prevotella and Tumebacillus, which may contribute to increased soil fertility through the production of beneficial enzymes such as invertase, urease and catalase. To date, this is the first study verifying the remediation effect of non-nitrogen-fixing cyanobacteria on nitrate-contaminated soil.

Deciphering nitrous oxide emissions from tropical soils of different land uses

Tropical regions are hotspots of increasing greenhouse gas emissions associated with land-use change. Although many field studies have quantified soil fluxes of nitrous oxide (N₂O; a potent greenhouse gas) from various land uses, the driving mechanisms remain uncertain. Here, we used tropical soils of diverse land uses and actively manipulated the soil moisture (35%, 60%, and 95% water-filled pore space [WFPS]) and substrate supply (control, nitrate, and nitrate plus glucose) to investigate the responses of N₂O emissions with short-term incubations. We then identified key factors regulating N₂O emissions out of a series of soil physicochemical and biological factors and explored how these factors interacted to drive N₂O emissions. Land-use changes from primary forest to oil palm or Acacia plantation risks emitting more N₂O, whereas low emissions could be maintained by conversion to Macaranga forest or Imperata grassland; these laboratory observations were corroborated by a literature synthesis of field N₂O measurements across tropical regions. Soil redox potential (Eh) and labile organic nitrogen (LON; amino acid mixture, arginine, and urea) mineralization were among the factors with greatest influence on N₂O emissions. In contrast to common understandings, the control of WFPS over N₂O emissions was largely indirect, and acted through Eh. The mineralization of LON, particularly arginine, potentially played multiple roles in N₂O production (e.g., bottlenecks of nitrifier-denitrification or simultaneous nitrification-denitrification versus substrate competition for co-denitrification). Structural equation models suggest that soil-environmental factors of different levels (from distal including land use, soil moisture, and pH to proximal such as LON mineralization) drive N₂O emissions through cascading interactions. Overall, we show that, despite identical initial soil conditions, land conversion can substantially alter the N₂O emission potential. Also, collectively considering soil-environmental regulators and their interactions associated with land conversion is crucial to predict and design mitigation strategies for N₂O emissions from land-use change.

New insight and enhancement mechanisms for Feammox process by electron shuttles in wastewater treatment - A systematic review

Ammonium oxidation coupled to Fe(III) reduction (Feammox) is a newly discovered iron-nitrogen cycle process of microbial catalyzed NH₄⁺ oxidation coupled with iron reduction. Fe(III) often exists in the form of insoluble iron minerals resulting in reduced microbial availability and low efficiency of Feammox. Electron shuttles(ESs) can be reversibly oxidized and reduced which has the potential to improve Feammox efficiency. This review summarizes the discovery process, electron transfer mechanism, influencing factors and driven microorganisms of Feammox, ang expounds the possibility and potential mechanism of ESs to enhance Feammox efficiency. Based on an in-depth analysis of the current research situation of Feammox for nitrogen removal, the knowledge gaps and future research directions including how to apply ESs enhanced Feammox to promote nitrogen removal in practical wastewater treatment have been highlighted. This review can provide new ideas for the engineering application research of Feammox and strong theoretical support for its development.

Different effects of the application of urea combined with nitrification inhibitor on cadmium activity in the rice-rape rotation system

Cadmium (Cd) is one of the most harmful and widespread pollutants in agricultural soil, where it is readily taken up by plants and threatens human health through the food chain. Nitrification inhibitors (NIs) are usually used to reduce nitrogen (N) loss in soil and increase the nitrogen use efficiency of crops. However, information regarding the Cd transfer in soil and crops system with the application of urea combined with NIs is limited. Especially, the influences of NIs on Cd availability in the rice-rape rotation are unclear. Here, we studied the pH, N speciation, and Cd activity in soils, as well as Cd accumulation in rice and rapeseed tissues that resulted after the application of dicyandiamide (DCD) and 3,4-dimethylpyrazole phosphate (DMPP) under alternating redox conditions. Rice and rape experiments appeared to represent an opposite phenomenon in the treatments of urea + NIs. Addition of NIs increased the pH of paddy soil, but decreased the pH of rapeseed soil. The treatments of urea + DCD and urea + DMPP0.5% produced a significantly lower concentration of extractable Cd in the paddy soil, and reduced the accumulation of Cd in brown rice. For rapeseed, the urea + NI treatments enhanced the Cd activity and increased the accumulation of Cd in rapeseed. It is proposed that NIs could be used to regulate N transformation in agricultural soils and inhibited Cd uptake by rice in urea fertilization. Moreover, the application of NIs combined with urea would potentially favor phytoextraction of Cd by rape, which is a ideal candidate for phytoremediation in Cd-contaminated soil.

Dissolved nitrogen in salt-affected soils reclaimed by planting rice: How is it influenced by soil physicochemical properties?

Planting rice is an effective way to reclaim salt-affected soils, but overapplying nitrogen fertilizer has resulted in a large loss in the amounts of soil dissolved nitrogen (SDN) from paddy fields. While the dynamic of SDN and its response to changes in soil physicochemical properties by planting rice are well-studied in non-salt-affected soils, little is known about the relationship between the SDN and soil physicochemical properties in reclaimed salt-affected soils. To fill this knowledge gap, soil samples were collected from bare salt-affected soils and three paddy fields with different reclaimed years (4, 9, 20) in six soil layers. Compared with bare salt-affected soils, soil salinity and sodicity exhibited trends of firstly increasing and then decreasing, whereas organic matter and total nitrogen tended to increase with the extension of the reclamation year. Soil dissolved organic carbon and total dissolved phosphorous showed decreasing trends. The sand content showed an increasing tendency, whereas the silt and clay contents tended to decrease. Ammonium nitrogen concentrations in reclaimed paddy fields were higher than those of bare salt-affected soils, and nitrate nitrogen concentrations in reclaimed paddy fields were smaller than those of bare salt-affected soils. However, the changing trends of dissolved organic nitrogen concentrations were not consistent among paddy fields with different reclamation years. Meanwhile, statistical analysis results revealed significant correlations between SDN and soil physicochemical properties. Moreover, dominant drivers influencing SDN were grouped using principal component analysis, identifying the following factors including soil sodicity, active nutrients, soil texture and water retention. Redundancy analysis also revealed that the soil physicochemical properties explained 69.65% of the variation in SDN and the influenced relationship between soil physicochemical properties and SDN nutrients. This study enhances our understanding of the mechanisms influencing SDN during planting rice and has implications for the management of the nutrient application of reclaimed salt-affected soils.

How Does Crop Rotation Influence Soil Moisture, Mineral Nitrogen, and Nitrogen Use Efficiency?

Rice-wheat (RW) cropping systems are integral to global food security. Despite being practiced for decades, Chinese RW cropping systems often suffer from low productivity and poor nitrogen use efficiency (NUE), reflecting management approaches that are not well-contextualized to region and season. Here, we develop the best management guides for N fertilizer in RW systems that are designed to help raise the productivity, NUE, and environmental sustainability of winter wheat over the long term. 2-year field experiments were conducted with four N fertilizer rates (0, 135, 180, and 225 kg N ha-1), allowing contrasts of yields, soil moisture, and NUE of wheat in RW in the humid climates zones on the Jianghan Plain. We compared RW systems with soybean/maize dryland wheat (DW) systems that are similarly endemic to China: after soybean/maize is harvested, soils are often drier compared with moisture content following rice harvest. With high seasonal N application rates (180-225 kg N ha-1), wheat crop yields increased by 24% in RW which were greater than comparable yields of wheat in DW, mainly due to greater kernels per spike in the former. Across treatments and years, N accumulation in plant tissue and kernel dry matter of DW was higher than that in RW, although mean agronomic efficiency of nitrogen (AEN) and physiological efficiency of nitrogen (PEN) of RW systems were greater. As N application rates increased from 135 to 225 kg ha-1, AEN and PEN of DW decreased but changed little for RW. Soil ammonium N was much lower than that of nitrate N; changes in NH4 + and NO3 - as a consequence of increasing N fertilization were similar for RW and DW. We recommend that tactical application of N fertilizer continue seasonally until midgrain filling for both the DW and RW systems. At fertilization rates above 180 kg N ha-1, yield responses disappeared but nitrate leaching increased significantly, suggesting declining environmental sustainability above this N ceiling threshold. Collectively, this study elicits many functional and agronomic trade-offs between yields, NUE, and environmental sustainability as a function of N fertilization. Our results show that yield and NUE responses measured as part of crop rotations are both more robust and more variable when derived over multiple seasons, management conditions, and sites.

Various quantification methods for estimating ammonia volatilization from wheat-maize cropping system

Ammonia volatilization (AV) dominates the pathway of nitrogen (N) fertilizer losses in crops throughout the world. However, different methods are highly responsible for the different measurements of AV. The existing techniques were separated into static chamber methods (SCM), dynamic chamber methods (DCM), calibrated Dräger-tube method (DTM) and micrometeorological methods (MMM), which were analyzed by a meta-study of 595 observations from 33 published studies. An exponential relationship (P < 0.01) was found between AV and the N fertilizer applied to wheat and maize using all the methods. The amount of AV using SCM was the lowest. The AV monitored by DCM was 24.5%-55.0% (wheat) and 46.9%-65.0% (maize) lower than that for the DTM. Additionally, the AV measured by DTM did not differ significantly in the wheat season but was 58.9% lower (P < 0.05) in the maize season than that in the MMM. To reveal the influencing factors responsible that were for DCM and DTM, a field experiment was conducted during the period of Oct. 2016 to Oct. 2017. The study indicated that the AV was 15.8%-28.3% (wheat, P < 0.05) and 36.7%-44.2% (maize, P < 0.05) lower when monitored by the DCM than when estimated by DTM. The concentration of soil NH4+-N, air temperature, and wind speed positively correlated with the NH3 fluxes. In addition, there was a significant linear correlation (P < 0.01) between the AV measured by DCM and DTM when the wind speed was <1.5 m s-1. This study highlighted the fact that wind speed was the main factor that caused the large difference between DCM and DTM. Herein, DTM or MMM was first recommended, and DCM was accepted when wind speed was <1.5 m s-1 for quantitative estimates of AV. However, only a straight comparison between DCM and DTM under the same field experiment was done, the other comparisons only being based on similar fertilization and environmental conditions. Consequently, the differences between methods have to be treated carefully.

Evolution of N-balance with qualitative expert evaluation approach

Pollution of rivers by nitrate is a major issue. Many land use units are considered as net nitrate producers when the input dominates the uptake (e.g. agricultural areas), or in the opposite, net consumers (e.g. wetlands), but the role of their spatial organization and temporal dynamics together across the watershed is unclear. Here, we used a Nitrate-related Ecological Functions (NEF) concept, together with an expert-based analysis in a Geographical Information System, to investigate the role of two opposite landscape types in the nitrate regulation across the Garonne river watershed (France). At any point in a watershed, there is nitrate production (NP) and nitrate removal (NR). The nitrate net balance (NNB) between NP and NR functions can be neutral (NB, Neutral Balance) when nitrate fluxes balance over space and time. The first landscape type, called Actual, was obtained using a set of 7 actual environmental variables, as land cover types, soil organic matter content and wetlands presence. The second landscape type, called Natural, described a non-anthropized landscape, using the same layer types as the Actual landscape. Potentials in NP and NR for each class in each map layer were rated by a set of experts according to their scientific knowledge. NP, NR and by difference, NNB maps were obtained, overlaid and compared to provide an evaluation of the potential for each landscape. In both landscapes, NNB were largely balanced (Actual = 48% and Natural = 67%). In the Actual landscape, NNB were secondly dominated by an imbalance toward NP (43%) and in the Natural landscape secondly imbalanced toward NR (32%). We constructed 'maps of disagreement' between both landscapes to provide a spatially explicit assessment of NNB evolution caused by changing land cover. We found that 67% of the agricultural areas and 60% of the artificial areas of the watershed had been subjected to a loss of nitrate ecological functions from Natural to Actual landscapes. Some management practices able to modify these factors may improve ecological functions and diminish the NEF disagreement of the watershed.

Denitrification in wetlands: A review towards a quantification at global scale

Research to understand the nitrogen cycle has been thriving. The production of reactive nitrogen by humans exceeds the removal capacity through denitrification of any natural ecosystem. The surplus of reactive nitrogen is also a significant pollutant that can shift biological diversity and distribution, promotes eutrophication in aquatic ecosystems, and affects human health. Denitrification is the microbial respiration in anoxic conditions and is the main process that removes definitively nitrates from the ecosystem by returning of reactive nitrogen (Nr) to the atmosphere as N₂ and N₂O emissions. This process occurs in the oceans, aquatic ecosystems and temporary flooded terrestrial ecosystems. Wetlands ecosystems are rich in organic matter and they have regular anoxic soil conditions ideal for denitrification to occur. In the current paper, we provide a meta-analysis that aims at exploring how research around global nitrogen, denitrification and wetlands had evolved in the last fifty years. Back in the time, wetland ecosystems were seen as non-exploitable elements of the landscape, and now they are being integrated as providers of ecosystem services. A significant improvement of molecular biology techniques and genetic extraction have made the denitrification process fully understood allowing constructed wetlands to be more efficient and popular. Yet, large uncertainties remain concerning the dynamic quantification of the global denitrification capacity of natural wetland ecosystems. The contribution of the current investigation is to provide a way forward for reducing these uncertainties by the integration of satellite-based Earth Observation (EO) technology with parsimonious physical based models.

Interactions between dicyandiamide and periphytic biofilms in paddy soils and subsequent effects on nitrogen cycling

Dicyandiamide (DCD) is commonly used as nitrification inhibitors which has the potential to reduce nitrogen loss from paddy soils. In paddy systems, periphytic biofilms are commonly presented at the soil/water interface and show significant effects on nutrient cycling. However, the interaction between DCD and periphytic biofilms in paddy and subsequent effects on nitrogen cycling is unclear. In this work, microcosm experiments were carried out to study the interaction between the periphytic biofilms and DCD and the potential influence on nitrogen cycling from in paddy. Results showed that DCD affected the development of periphytic biofilms, while the presence of periphytic biofilms accelerated DCD degradation. Results also showed DCD application reduced nitrification potential mainly by inhibiting ammonia-oxidizing bacteria (AOB). Higher DCD dosage increased NH₃ volatilization loss. However, presence of periphytic biofilm reduced the NH₃ volatilization loss but increased denitrification. Our work contributes to a better understanding on the nitrogen cycling processes in paddy, and provides useful information for the improvement of nitrogen utilization efficiency and the control of non-point source pollution.