1
|
de Souza YPA, Siani R, Albracht C, Huang Y, Eisenhauer N, Vogel A, Wagg C, Schloter M, Schulz S. The effect of successive summer drought periods on bacterial diversity along a plant species richness gradient. FEMS Microbiol Ecol 2024; 100:fiae096. [PMID: 38955391 PMCID: PMC11264299 DOI: 10.1093/femsec/fiae096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Revised: 05/29/2024] [Accepted: 07/01/2024] [Indexed: 07/04/2024] Open
Abstract
Drought is a major stressor to soil microbial communities, and the intensification of climate change is predicted to increase hydric stress worldwide in the coming decades. As a possible mitigating factor for the consequences of prolonged drought periods, above and belowground biodiversity can increase ecosystem resistance and resilience by improving metabolic redundancy and complementarity as biodiversity increases. Here, we investigated the interaction effect between plant richness and successive, simulated summer drought on soil microbial communities during a period of 9 years.To do that, we made use of a well-established biodiversity experiment (The Jena Experiment) to investigate the response of microbial richness and community composition to successive drought periods alongside a plant richness gradient, which covers 1-, 2-, 4-, 8-, 16-, and 60-species plant communities. Plots were covered from natural precipitation by installing rain shelters 6 weeks every summer. Bulk soil samples were collected 1 year after the last summer drought was simulated. Our data indicate that bacterial richness increased after successive exposure to drought, with the increase being stable along the plant richness gradient. We identified a significant effect of plant species richness on the soil microbial community composition and determined the taxa significantly impacted by drought at each plant richness level. Our data successfully demonstrates that summer drought might have a legacy effect on soil bacterial communities.
Collapse
Affiliation(s)
- Yuri Pinheiro Alves de Souza
- Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum München, D-85764 Neuherberg, Germany
- TUM School of Life Science, Chair of Environmental Microbiology, Technische Universität München, 85354 Freising, Germany
| | - Roberto Siani
- Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum München, D-85764 Neuherberg, Germany
- TUM School of Life Science, Chair of Environmental Microbiology, Technische Universität München, 85354 Freising, Germany
| | - Cynthia Albracht
- Swammerdam Institute of Life Sciences at University of Amsterdam, 1098 XH Amsterdam, the Netherlands
- Department Soil Ecology, Helmholtz Centre for Environmental Research – UFZ, 06120 Halle (Saale), Germany
| | - Yuanyuan Huang
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, 04103 Leipzig, Germany
- Institute of Biology, Leipzig University, 04103 Leipzig, Germany
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, 04103 Leipzig, Germany
- Institute of Biology, Leipzig University, 04103 Leipzig, Germany
| | - Anja Vogel
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, 04103 Leipzig, Germany
- Institute of Biology, Leipzig University, 04103 Leipzig, Germany
| | - Cameron Wagg
- Department of Geography, Remote Sensing Laboratories, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
- Fredericton Research and Development Centre, Agriculture and Agri-Food Canada, 95 Innovation Road, Post Office Box 20280, Fredericton E3B 4Z7 NB, Canada
| | - Michael Schloter
- Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum München, D-85764 Neuherberg, Germany
- TUM School of Life Science, Chair of Environmental Microbiology, Technische Universität München, 85354 Freising, Germany
| | - Stefanie Schulz
- Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum München, D-85764 Neuherberg, Germany
| |
Collapse
|
2
|
Urbaniak M, Mierzejewska-Sinner E, Bednarek A, Krauze K, Włodarczyk-Marciniak R. Microbial response to Nature-Based Solutions in urban soils: A comprehensive analysis using Biolog® EcoPlates™. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 928:172360. [PMID: 38614349 DOI: 10.1016/j.scitotenv.2024.172360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 04/06/2024] [Accepted: 04/08/2024] [Indexed: 04/15/2024]
Abstract
The study presents a comprehensive examination of changes in soil microbial functional diversity (hereafter called microbial activity) following the implementation of Nature-Based Solutions (NBS) in urban areas. Utilizing the Biolog® EcoPlates™ technique, the study explored variations in microbial diversity in urban soil under NBSs implementation across timespan of two years. Significant differences in microbial activity were observed between control location and those with NBS implementations, with seasonal variations playing a crucial role. NBS positively impacted soil microbial activity especially at two locations: infiltration basin and wild flower meadow showing the most substantial increase after NBS implementation. The study links rainfall levels to microbial functional diversity, highlighting the influence of climatic conditions on soil microbiome. The research investigates also the utilization of different carbon sources by soil microorganisms, shedding light on the specificity of substrate utilization across seasons and locations. The results demonstrate that NBSs implementations lead to changes in substrate utilization patterns, emphasizing the positive influence of NBS on soil microbial communities. Likewise, biodiversity indices, such as Shannon-Weaver diversity (H'), Shannon Evenness Index (E), and substrate richness index (S), exhibit significant variations in response to NBS. Notably, NBS implementation positively impacted H' and E indexes, especially in infiltration basin and wild flower meadow, underlining the benefits of NBS for enhancing microbial diversity. The obtained results demonstrated valuable insight into the dynamic interactions between NBS implementation and soil microbial activity. The findings underscore the potential of NBS to positively influence soil microbial diversity in urban environments, contributing to urban sustainability and soil health. The study emphasizes the importance of monitoring soil microbial activity to assess the effectiveness of NBS interventions and guides sustainable urban development practices.
Collapse
Affiliation(s)
- Magdalena Urbaniak
- UNESCO Chair on Ecohydrology and Applied Ecology, Faculty of Biology and Environmental Protection, University of Lodz, Lodz, Poland.
| | - Elżbieta Mierzejewska-Sinner
- UNESCO Chair on Ecohydrology and Applied Ecology, Faculty of Biology and Environmental Protection, University of Lodz, Lodz, Poland.
| | - Agnieszka Bednarek
- UNESCO Chair on Ecohydrology and Applied Ecology, Faculty of Biology and Environmental Protection, University of Lodz, Lodz, Poland.
| | - Kinga Krauze
- European Regional Centre for Ecohydrology of the Polish Academy of Sciences, Lodz, Poland.
| | | |
Collapse
|
3
|
Yang K, Llusià J, Preece C, Ogaya R, Márquez Tur L, Mu Z, You C, Xu Z, Tan Y, Peñuelas J. Impacts of seasonality, drought, nitrogen fertilization, and litter on soil fluxes of biogenic volatile organic compounds in a Mediterranean forest. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167354. [PMID: 37774858 DOI: 10.1016/j.scitotenv.2023.167354] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Revised: 09/06/2023] [Accepted: 09/23/2023] [Indexed: 10/01/2023]
Abstract
Biogenic volatile organic compounds (BVOCs) play critical roles in ecosystems at various scales, influencing above- and below-ground interactions and contributing to the atmospheric environment. Nonetheless, there is a lack of research on soil BVOC fluxes and their response to environmental changes. This study aimed to investigate the impact of drought, nitrogen (N) fertilization, and litter manipulation on soil BVOC fluxes in a Mediterranean forest. We assessed the effects of drought and N fertilization on soil BVOC exchanges and soil CO2 fluxes over two consecutive years using a dynamic chamber method, and solid-phase microextraction was utilized to quantify soil BVOCs in one year. Our findings revealed that the soil acted as an annual net sink for isoprenoids (1.30-10.33 μg m-2 h-1), with the highest uptake rates observed during summers (25.90 ± 9.36 μg m-2 h-1). The increased summer uptake can be attributed to the significant concentration gradient of BVOCs between atmosphere and soil. However, strong seasonal dynamics were observed, as the soil acted as a source of BVOCs in spring and autumn. The uptake rate of isoprenoids exhibited a significant positive correlation with soil temperature and atmospheric isoprenoid concentrations, while displaying a negative correlation with soil moisture and soil CO2 flux. The effects of drought and N fertilization on soil BVOCs were influenced by the type of VOCs, litter layer, and season. Specifically, drought significantly affected the exchange rate and quantities of sesquiterpenes. N fertilization led to increased emissions of specific BVOCs (α-pinene and camphene) due to the stimulation of litter emissions. These findings underscore the importance of the soil as a sink for atmospheric BVOCs in this dry Mediterranean ecosystem. Future drought conditions may significantly impact soil water content, resulting in drier soils throughout the year, which will profoundly affect the exchange of soil BVOCs between the soil and atmosphere.
Collapse
Affiliation(s)
- Kaijun Yang
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, CSIC, Bellaterra, 08193 Barcelona, Catalonia, Spain; CREAF, Cerdanyola del Vallès, 08193 Barcelona, Catalonia, Spain.
| | - Joan Llusià
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, CSIC, Bellaterra, 08193 Barcelona, Catalonia, Spain; CREAF, Cerdanyola del Vallès, 08193 Barcelona, Catalonia, Spain
| | - Catherine Preece
- Institute of Agrifood Research and Technology (IRTA), Sustainability in Biosystems Programme, Torre Marimon, 08140 Caldes de Montbui, Spain
| | - Roma Ogaya
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, CSIC, Bellaterra, 08193 Barcelona, Catalonia, Spain; CREAF, Cerdanyola del Vallès, 08193 Barcelona, Catalonia, Spain
| | - Laura Márquez Tur
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, CSIC, Bellaterra, 08193 Barcelona, Catalonia, Spain; CREAF, Cerdanyola del Vallès, 08193 Barcelona, Catalonia, Spain
| | - Zhaobin Mu
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, CSIC, Bellaterra, 08193 Barcelona, Catalonia, Spain; CREAF, Cerdanyola del Vallès, 08193 Barcelona, Catalonia, Spain; State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Protection and Resources Utilization, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Chengming You
- Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province & National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River & Institute of Ecology and Forestry, Sichuan Agricultural University, Chengdu 611130, China
| | - Zhenfeng Xu
- Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province & National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River & Institute of Ecology and Forestry, Sichuan Agricultural University, Chengdu 611130, China
| | - Yu Tan
- Guangxi Key Laboratory of Plant Conservation and Restoration Ecology in Karst Terrain, Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of Sciences, Guilin 541006, China
| | - Josep Peñuelas
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, CSIC, Bellaterra, 08193 Barcelona, Catalonia, Spain; CREAF, Cerdanyola del Vallès, 08193 Barcelona, Catalonia, Spain
| |
Collapse
|
4
|
Contreras MJ, Leal K, Bruna P, Nuñez-Montero K, Goméz-Espinoza O, Santos A, Bravo L, Valenzuela B, Solis F, Gahona G, Cayo M, Dinamarca MA, Ibacache-Quiroga C, Zamorano P, Barrientos L. Commonalities between the Atacama Desert and Antarctica rhizosphere microbial communities. Front Microbiol 2023; 14:1197399. [PMID: 37538842 PMCID: PMC10395097 DOI: 10.3389/fmicb.2023.1197399] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Accepted: 06/30/2023] [Indexed: 08/05/2023] Open
Abstract
Plant-microbiota interactions have significant effects on plant growth, health, and productivity. Rhizosphere microorganisms are involved in processes that promote physiological responses to biotic and abiotic stresses in plants. In recent years, the interest in microorganisms to improve plant productivity has increased, mainly aiming to find promising strains to overcome the impact of climate change on crops. In this work, we hypothesize that given the desertic environment of the Antarctic and the Atacama Desert, different plant species inhabiting these areas might share microbial taxa with functions associated with desiccation and drought stress tolerance. Therefore, in this study, we described and compared the composition of the rhizobacterial community associated with Deschampsia antarctica (Da), Colobanthus quitensis (Cq) from Antarctic territories, and Croton chilensis (Cc), Eulychnia iquiquensis (Ei) and Nicotiana solanifolia (Ns) from coastal Atacama Desert environments by using 16S rRNA amplicon sequencing. In addition, we evaluated the putative functions of that rhizobacterial community that are likely involved in nutrient acquisition and stress tolerance of these plants. Even though each plant microbial rhizosphere presents a unique taxonomic pattern of 3,019 different sequences, the distribution at the genus level showed a core microbiome with a higher abundance of Haliangium, Bryobacter, Bacillus, MND1 from the Nitrosomonadaceae family, and unclassified taxa from Gemmatiamonadaceae and Chitinophagaceae families in the rhizosphere of all samples analyzed (781 unique sequences). In addition, species Gemmatirosa kalamazoonesis and Solibacter usitatus were shared by the core microbiome of both Antarctic and Desert plants. All the taxa mentioned above had been previously associated with beneficial effects in plants. Also, this microbial core composition converged with the functional prediction related to survival under harsh conditions, including chemoheterotrophy, ureolysis, phototrophy, nitrogen fixation, and chitinolysis. Therefore, this study provides relevant information for the exploration of rhizospheric microorganisms from plants in extreme conditions of the Atacama Desert and Antarctic as promising plant growth-promoting rhizobacteria.
Collapse
Affiliation(s)
- María José Contreras
- Centro de Excelencia en Medicina Traslacional, Facultad de Medicina, Universidad de La Frontera, Temuco, Chile
| | - Karla Leal
- Centro de Excelencia en Medicina Traslacional, Facultad de Medicina, Universidad de La Frontera, Temuco, Chile
| | - Pablo Bruna
- Centro de Excelencia en Medicina Traslacional, Facultad de Medicina, Universidad de La Frontera, Temuco, Chile
| | - Kattia Nuñez-Montero
- Instituto de Ciencias Aplicadas, Facultad de Ingeniería, Universidad Autónoma de Chile, Temuco, Chile
- Biotechnology Research Center, Instituto Tecnológico de Costa Rica, Cártago, Costa Rica
| | - Olman Goméz-Espinoza
- Department of Agricultural Sciences and Natural Resources, Faculty of Agricultural Sciences and Environment, Universidad de La Frontera, Temuco, Chile
| | - Andrés Santos
- Universitat Autònoma de Barcelona, Departament de Genètica i de Microbiologia, Institut Biotecnologia i de Biomedicina, Cerdanyola del Vallès, Barcelona, Spain
| | - León Bravo
- Department of Agricultural Sciences and Natural Resources, Faculty of Agricultural Sciences and Environment, Universidad de La Frontera, Temuco, Chile
| | - Bernardita Valenzuela
- Laboratorio de Microorganismos Extremófilos, Instituto Antofagasta, Universidad de Antofagasta, Antofagasta, Chile
| | - Francisco Solis
- Laboratorio de Microorganismos Extremófilos, Instituto Antofagasta, Universidad de Antofagasta, Antofagasta, Chile
| | - Giovanni Gahona
- Laboratorio de Microorganismos Extremófilos, Instituto Antofagasta, Universidad de Antofagasta, Antofagasta, Chile
| | - Mayra Cayo
- Laboratorio de Microorganismos Extremófilos, Instituto Antofagasta, Universidad de Antofagasta, Antofagasta, Chile
| | - M. Alejandro Dinamarca
- Escuela de Nutrición y Dietética, Facultad de Farmacia, Universidad de Valparaíso, Valparaíso, Chile
- Centro de Micro-Bioinnovación, Universidad de Valparaíso, Valparaíso, Chile
| | - Claudia Ibacache-Quiroga
- Escuela de Nutrición y Dietética, Facultad de Farmacia, Universidad de Valparaíso, Valparaíso, Chile
- Centro de Micro-Bioinnovación, Universidad de Valparaíso, Valparaíso, Chile
| | - Pedro Zamorano
- Laboratorio de Microorganismos Extremófilos, Instituto Antofagasta, Universidad de Antofagasta, Antofagasta, Chile
- Departamento Biomédico, Facultad de Ciencias de la Salud, Universidad de Antofagasta, Antofagasta, Chile
| | - Leticia Barrientos
- Instituto de Ciencias Aplicadas, Facultad de Ingeniería, Universidad Autónoma de Chile, Temuco, Chile
| |
Collapse
|
5
|
Qu Q, Xu H, Ai Z, Wang M, Wang G, Liu G, Geissen V, Ritsema CJ, Xue S. Impacts of extreme weather events on terrestrial carbon and nitrogen cycling: A global meta-analysis. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 319:120996. [PMID: 36608729 DOI: 10.1016/j.envpol.2022.120996] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Revised: 12/15/2022] [Accepted: 12/31/2022] [Indexed: 06/17/2023]
Abstract
Some weather events like drought, increased precipitation, and warming exert substantial impact on the terrestrial C and N cycling. However, it remains largely unclear about the effect of extreme weather events (extreme drought, heavy rainfall, extreme heat, and extreme cold) on terrestrial C and N cycling. This study aims to analyze the responses of pools and fluxes of C and N in plants, soil, and microbes to extreme weather events by conducting a global meta-analysis of 656 pairwise observations. Results showed that extreme weather events (extreme drought, heavy rainfall, and extreme heat) decreased plant biomass and C flux, and extreme drought and heavy rainfall decreased the plant N pool and soil N flux. These results suggest that extreme weather events weaken the C and N cycling process in terrestrial ecosystems. However, this study did not determine the impact of extreme cold on ecosystem C and N cycling. Additional field experiments are needed to reveal the effects of extreme cold on global C and N cycling patterns.
Collapse
Affiliation(s)
- Qing Qu
- State Key Laboratory of Soil Erosion and Dryland Farming on Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, 712100, China; Institute of Soil and Water Conservation, Northwest A & F University, Yangling, 712100, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Hongwei Xu
- National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River & Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu, 611130, China
| | - Zemin Ai
- College of Geomatics, Xi'an University of Science and Technology, Xi'an, 710054, China
| | - Minggang Wang
- The Key Laboratory for Silviculture and Conservation of Ministry of Education, College of Forestry, Beijing Forestry University, Beijing, China
| | - Guoliang Wang
- State Key Laboratory of Soil Erosion and Dryland Farming on Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, 712100, China; Institute of Soil and Water Conservation, Northwest A & F University, Yangling, 712100, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Guobin Liu
- State Key Laboratory of Soil Erosion and Dryland Farming on Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, 712100, China; Institute of Soil and Water Conservation, Northwest A & F University, Yangling, 712100, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Violette Geissen
- Wageningen University & Research, Soil Physics and Land Management, POB 47, NL-6700 AA Wageningen, Netherlands
| | - Coen J Ritsema
- Wageningen University & Research, Soil Physics and Land Management, POB 47, NL-6700 AA Wageningen, Netherlands
| | - Sha Xue
- State Key Laboratory of Soil Erosion and Dryland Farming on Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, 712100, China; Institute of Soil and Water Conservation, Northwest A & F University, Yangling, 712100, China; University of Chinese Academy of Sciences, Beijing, 100049, China.
| |
Collapse
|
6
|
Gender Effects of Dioecious Plant Populus cathayana on Fungal Community and Mycorrhizal Distribution at Different Arid Zones in Qinghai, China. Microorganisms 2023; 11:microorganisms11020270. [PMID: 36838235 PMCID: PMC9961886 DOI: 10.3390/microorganisms11020270] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Revised: 01/14/2023] [Accepted: 01/16/2023] [Indexed: 01/22/2023] Open
Abstract
Dioecious plants have a wide distribution in nature and gender effect may cause significant alterations in rhizosphere fungal community and soil properties. However, little is known regarding changes in response to dioecious plants. This study aimed to investigate the effects that the dioecious plant, Populus cathayana, and regions of different arid levels have on the fungal community, mycorrhizal distribution, soil enzymatic activities, and nutrient contents. This study characterized fungal and soil factors from the rhizosphere of the dioecious plant Populus cathayana located in the semi-humid regions (Chengguan), semi-arid regions (Sining, Haiyan) and arid regions (Ulan, Chaka). Rhizosphere soil was collected from each site and gender, and the total fungal genomic DNA was extracted. DNA amplicons from fungal ITS region were generated and subjected to Illumina Miseq sequencing. A total of 5 phyla, 28 classes, 92 orders, 170 families, and 380 genuses were observed. AMF distribution peaked at Chaka, which did not conform to the trend. Gender had significant effects on fungal communities: there were obvious differences in fungal OTUs between genders. Alpha diversity raised at first and then decreased. RDA results showed available P, available K, pH, ALP activity, ammonium N, EC, water content and catalase activity were the key contributors in sample areas. Our results suggested potential interaction effects between plant gender and fungal community.
Collapse
|
7
|
Berg G, Cernava T. The plant microbiota signature of the Anthropocene as a challenge for microbiome research. MICROBIOME 2022; 10:54. [PMID: 35346369 PMCID: PMC8959079 DOI: 10.1186/s40168-021-01224-5] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 12/23/2021] [Indexed: 05/21/2023]
Abstract
BACKGROUND One promise of the recently presented microbiome definition suggested that, in combination with unifying concepts and standards, microbiome research could be important for solving new challenges associated with anthropogenic-driven changes in various microbiota. With this commentary we want to further elaborate this suggestion, because we noticed specific signatures in microbiota affected by the Anthropocene. RESULTS Here, we discuss this based on a review of available literature and our own research targeting exemplarily the plant microbiome. It is not only crucial for plants themselves but also linked to planetary health. We suggest that different human activities are commonly linked to a shift of diversity and evenness of the plant microbiota, which is also characterized by a decrease of host specificity, and an increase of r-strategic microbes, pathogens, and hypermutators. The resistome, anchored in the microbiome, follows this shift by an increase of specific antimicrobial resistance (AMR) mechanisms as well as an increase of plasmid-associated resistance genes. This typical microbiome signature of the Anthropocene is often associated with dysbiosis and loss of resilience, and leads to frequent pathogen outbreaks. Although several of these observations are already confirmed by meta-studies, this issue requires more attention in upcoming microbiome studies. CONCLUSIONS Our commentary aims to inspire holistic studies for the development of solutions to restore and save microbial diversity for ecosystem functioning as well as the closely connected planetary health. Video abstract.
Collapse
Affiliation(s)
- Gabriele Berg
- Institute of Environmental Biotechnology, Graz University of Technology, Petersgasse 12, 8010, Graz, Austria.
- Leibniz-Institute for Agricultural Engineering Potsdam, Max-Eyth-Allee 100, 14469, Potsdam, Germany.
- Institute for Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Str. 24/25, 14476, Potsdam, Germany.
| | - Tomislav Cernava
- Institute of Environmental Biotechnology, Graz University of Technology, Petersgasse 12, 8010, Graz, Austria
| |
Collapse
|
8
|
Ferreira CSS, Seifollahi-Aghmiuni S, Destouni G, Ghajarnia N, Kalantari Z. Soil degradation in the European Mediterranean region: Processes, status and consequences. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 805:150106. [PMID: 34537691 DOI: 10.1016/j.scitotenv.2021.150106] [Citation(s) in RCA: 37] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Revised: 08/30/2021] [Accepted: 08/30/2021] [Indexed: 06/13/2023]
Abstract
Soil, a non-renewable resource, sustains life on Earth by supporting around 95% of global food production and providing ecosystem services such as biomass production, filtration of contaminants and transfer of mass and energy between spheres. Unsustainable management practices and climate change are threatening the natural capital of soils, particularly in the Mediterranean region, where increasing population, rapid land-use changes, associated socio-economic activities and climate change are imposing high pressures on the region's shallow soils. Despite evidence of high soil susceptibility to degradation and desertification, the true extent of soil degradation in the region is unknown. This paper reviews and summarises the scientific literature and relevant official reports, with the aim to advance this knowledge by synthesizing, mapping, and identifying gaps regarding the status, causes, and consequences of soil degradation processes in the European Mediterranean region. This is needed as scientific underpinning of efforts to counteract soil degradation in the region. Three main degradation categories are then considered: physical (soil sealing, compaction, erosion), chemical (soil organic matter, contamination, salinisation), and biological. We find some degradation processes to be relatively well-documented (e.g. soil erosion), while others, such as loss of biodiversity, remain poorly addressed, with limited data availability. We suggest establishment of a continuous, harmonised soil monitoring system at national and regional scale in the Mediterranean region to provide comparable datasets and chart the spatial extent and temporal changes in soil degradation, and corresponding economic implications. This is critical to support decision-making and fulfilment of related sustainable development goals.
Collapse
Affiliation(s)
- Carla S S Ferreira
- Department of Physical Geography and Bolin Centre for Climate Research, Stockholm University, SE-106 91 Stockholm, Sweden; Navarino Environmental Observatory, Costa Navarino, Navarino Dunes Messinia 24001, Greece.
| | - Samaneh Seifollahi-Aghmiuni
- Department of Physical Geography and Bolin Centre for Climate Research, Stockholm University, SE-106 91 Stockholm, Sweden; Navarino Environmental Observatory, Costa Navarino, Navarino Dunes Messinia 24001, Greece
| | - Georgia Destouni
- Department of Physical Geography and Bolin Centre for Climate Research, Stockholm University, SE-106 91 Stockholm, Sweden; Navarino Environmental Observatory, Costa Navarino, Navarino Dunes Messinia 24001, Greece
| | - Navid Ghajarnia
- Department of Physical Geography and Bolin Centre for Climate Research, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Zahra Kalantari
- Department of Physical Geography and Bolin Centre for Climate Research, Stockholm University, SE-106 91 Stockholm, Sweden; Navarino Environmental Observatory, Costa Navarino, Navarino Dunes Messinia 24001, Greece; Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, SE-100 44 Stockholm, Sweden
| |
Collapse
|
9
|
Bi W, Weng B, Yan D, Wang H, Wang M, Yan S, Jing L, Liu T, Chang W. Responses of Phosphate-Solubilizing Microorganisms Mediated Phosphorus Cycling to Drought-Flood Abrupt Alternation in Summer Maize Field Soil. Front Microbiol 2022; 12:768921. [PMID: 35111138 PMCID: PMC8802831 DOI: 10.3389/fmicb.2021.768921] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Accepted: 12/02/2021] [Indexed: 11/13/2022] Open
Abstract
Soil microbial communities are essential to phosphorus (P) cycling, especially in the process of insoluble phosphorus solubilization for plant P uptake. Phosphate-solubilizing microorganisms (PSM) are the dominant driving forces. The PSM mediated soil P cycling is easily affected by water condition changes due to extreme hydrological events. Previous studies basically focused on the effects of droughts, floods, or drying-rewetting on P cycling, while few focused on drought-flood abrupt alternation (DFAA), especially through microbial activities. This study explored the DFAA effects on P cycling mediated by PSM and P metabolism-related genes in summer maize field soil. Field control experiments were conducted to simulate two levels of DFAA (light drought-moderate flood, moderate drought-moderate flood) during two summer maize growing periods (seeding-jointing stage, tasseling-grain filling stage). Results showed that the relative abundance of phosphate-solubilizing bacteria (PSB) and phosphate-solubilizing fungi (PSF) increased after DFAA compared to the control system (CS), and PSF has lower resistance but higher resilience to DFAA than PSB. Significant differences can be found on the genera Pseudomonas, Arthrobacter, and Penicillium, and the P metabolism-related gene K21195 under DFAA. The DFAA also led to unstable and dispersed structure of the farmland ecosystem network related to P cycling, with persistent influences until the mature stage of summer maize. This study provides references for understanding the micro process on P cycling under DFAA in topsoil, which could further guide the DFAA regulations.
Collapse
Affiliation(s)
- Wuxia Bi
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing, China
| | - Baisha Weng
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing, China
- Yinshanbeilu Grassland Eco-Hydrology National Observation and Research Station, China Institute of Water Resources and Hydropower Research, Beijing, China
- *Correspondence: Baisha Weng, ,
| | - Denghua Yan
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing, China
- Yinshanbeilu Grassland Eco-Hydrology National Observation and Research Station, China Institute of Water Resources and Hydropower Research, Beijing, China
| | - Hao Wang
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing, China
| | - Mengke Wang
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing, China
| | - Siying Yan
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing, China
- College of Resource Environment and Tourism, Capital Normal University, Beijing, China
| | - Lanshu Jing
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing, China
- College of Hydrology and Water Resources, Hohai University, Nanjing, China
| | - Tiejun Liu
- Yinshanbeilu Grassland Eco-Hydrology National Observation and Research Station, China Institute of Water Resources and Hydropower Research, Beijing, China
- Collaborative Innovation Center for Grassland Ecological Security (Jointly Supported by the Ministry of Education of China and Inner Mongolia Autonomous Region), Hohhot, China
| | - Wenjuan Chang
- College of Hydraulic and Environmental Engineering, China Three Gorges University, Yichang, China
| |
Collapse
|
10
|
Afforestation with Pinus sylvestris var. mongolica remodelled soil bacterial community and potential metabolic function in the Horqin Desert. Glob Ecol Conserv 2021. [DOI: 10.1016/j.gecco.2021.e01716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
|
11
|
Babst F, Friend AD, Karamihalaki M, Wei J, von Arx G, Papale D, Peters RL. Modeling Ambitions Outpace Observations of Forest Carbon Allocation. TRENDS IN PLANT SCIENCE 2021; 26:210-219. [PMID: 33168468 DOI: 10.1016/j.tplants.2020.10.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Revised: 08/17/2020] [Accepted: 10/08/2020] [Indexed: 06/11/2023]
Abstract
There have been vociferous calls for 'tree-centered' vegetation models to refine predictions of forest carbon (C) cycling. Unfortunately, our global survey at flux-tower sites indicates insufficient empirical data support for this much-needed model development. We urge for a new generation of studies across large environmental gradients that strategically pair long-term ecosystem monitoring with manipulative experiments on mature trees. For this, we outline a versatile experimental framework to build cross-scale data archives of C uptake and allocation to structural, non-structural, and respiratory sinks. Community-wide efforts and discussions are needed to implement this framework, especially in hitherto underrepresented tropical forests. Global coordination and realistic priorities for data collection will thereby be key to achieve and maintain adequate empirical support for tree-centered vegetation modeling.
Collapse
Affiliation(s)
- Flurin Babst
- W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Krakow, Poland; Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland.
| | - Andrew D Friend
- Department of Geography, University of Cambridge, Downing Place, Cambridge CB2 3EN, UK
| | - Maria Karamihalaki
- W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Krakow, Poland; Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Jingshu Wei
- W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Krakow, Poland; Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Georg von Arx
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Dario Papale
- DIBAF, University of Tuscia, Largo dell'Universita, 01100 Viterbo, Italy
| | - Richard L Peters
- Swiss Federal Research Institute WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland; Laboratory of Plant Ecology, Ghent University, Coupure Links 653, 9000 Gent, Belgium
| |
Collapse
|