Removal of sulfamethazine and Cu2+ by Sakaguchia cladiensis A5: Performance and transcriptome analysis

Acyl-Homoserine Lactone Enhances the Resistance of Anammox Consortia under Heavy Metal Stress: Quorum Sensing Regulatory Mechanism

Anaerobic ammonium oxidation (anammox) represents an energy-efficient process for the removal of biological nitrogen from ammonium-rich wastewater. However, the susceptibility of anammox bacteria to coexisting heavy metals considerably restricts their use in engineering practices. Here, we report that acyl-homoserine lactone (AHL), a signaling molecule that mediates quorum sensing (QS), significantly enhances the nitrogen removal rate by 24% under Cu2+ stress. A suite of macro-/microanalytical and bioinformatic analyses was exploited to unravel the underlying mechanisms of AHL-induced Cu2+ resistance. Macro-/microanalytical evidence indicated that AHL regulations on the production, spatial distribution, and functional groups of extracellular polymeric substances were not significant, ruling out extracellular partitioning and complexation as a principal mechanism. Meanwhile, molecular biological evidence showed that AHL upregulated the transcriptional levels of resistance genes (sod, kat, cysQ, and czcC responsible for antioxidation defense, Cu2+ sequestration, and transport) to appreciable extents, indicating intracellular resistance as the primary mechanism. This study yielded a mechanistic understanding of the regulatory roles of AHL in extracellular and intracellular resistance of anammox consortia, providing a fundamental basis for utilizing QS regulation for efficient nitrogen removal in wastewaters with heavy metal stress.

Mechanism of microplastics promoting sulfamethoxazole biodegradation in activated sludge as revealed by DNA-stable isotope probing

Microplastics (MPs) often coexist with sulfonamide antibiotics (SAs) in the activated sludge of wastewater treatment plants (WWTPs). Microbial degradation is a crucial pathway for SAs removal in the activated sludge, though its response to MPs still yet to be disclosed. Here, we combined DNA-stable isotope probing (DNA-SIP), PICRUSt and MENA techniques to explore the impact of MPs on the microbial biodegradation of sulfamethoxazole (SMX) in the activated sludge. DNA-SIP revealed 20 genera were responsible for the SMX degradation in the activated sludge, with 13 of these genera being firstly linked with sulfonamide biodegradation. The potential SMX-degrading bacteria showed complex synergistic interaction with the other microbes. Eight degradation pathways were constructed based on the nine identified SMX-related degradation genes. MPs addition enhanced the SMX biodegradation by altering the structure of degrading microbes, increasing their relative abundance and promoting the synergistic interactions between potential SMX-degrading bacteria and other microbes in activated sludge. Besides, genes related to abundant energy production and biofilm formation were involved in SMX degradation in the activated sludge with MPs. Our study reveals the MPs influence on SMX biodegradation in activated sludge, and disclose the potential underlying mechanisms, which will benefit the regulation on antibiotic removal in WWTPs.

Waste control by waste: A new approach for antibiotic removal and metal reuse from livestock wastewater using ascorbic acid-enhanced CaO2/Cu(II) system

Aiming at the coexistence of antibiotics and Cu(II) in livestock wastewater, a novelty strategy for the simultaneous removal of antibiotics and Cu ions by in-situ utilization of Cu(II) (i.e., CP/Cu(II) and CP/Cu(II)/ascorbic acid (AA) systems) was proposed. The removal rate of florfenicol (FF) in the CP/Cu(II)/AA system was 6.9 times higher than that of the CP/Cu(II) system. CP/Cu(II)/AA system was also effective in removing antibiotics from real livestock tailwater. Simultaneously, the removal of Cu ions in CP/Cu(II) and CP/Cu(II)/AA systems could reach 54.5 % and 15.7 %, respectively. The added AA could significantly enhance the antibiotics degradation but inhibit the Cu ions removal. HO•, O2•-, Cu(III), and •C-R were detected in the CP/Cu(II)/AA system, in which HO• was confirmed as the predominant contributor for FF degradation, and Cu(III) and •C-R also participated in FF elimination. The role of AA could accelerate HO• production and Cu(I)/Cu(II)/Cu(III) cycle, and form •C-R. The degradation products and pathways of FF in the CP/Cu(II)/AA system were proposed and the toxicity of the degradation products was evaluated by the toxicity analysis software (T.E.S.T). The results of this work suggest that without introducing complex catalysts, the feasibility of in-situ utilization of Cu(II) inherently or artificially introduced in livestock wastewater activating CP for antibiotic degradation and Cu ions removal was verified.

Characterization and removal mechanism of a novel enrofloxacin-degrading microorganism, Microbacterium proteolyticum GJEE142 capable of simultaneous removal of enrofloxacin, nitrogen and phosphorus

In the study, a novel ENR-degrading microorganism, Microbacterium proteolyticum GJEE142 was isolated from aquaculture wastewater for the first time. The ENR removal of strain GJEE142 was reliant upon the provision of limited additional carbon source, and was adaptative to low temperature (13 ℃) and high salinity (50‰). The ENR removal process, to which intracellular enzymes made more contributions, was implemented in three proposed pathways. During the removal process, oxidative stress response of strain GJEE142 was activated and the bacterial toxicity of ENR was decreased. Strain GJEE142 could also achieve the synchronous removal of ammonium, nitrite, nitrate and phosphorus with the nitrogen removal pathways of nitrate → nitrite → ammonium → glutamine → glutamate → glutamate metabolism and nitrate → nitrite → gaseous nitrogen. The phosphorus removal was implemented under complete aerobic conditions with the assistance of polyphosphate kinase and exopolyphosphatase. Genomic analysis provided corresponding genetic insights for deciphering removal mechanisms of ENR, nitrogen and phosphorus. ENR, nitrogen and phosphorus in both actual aquaculture wastewater and domestic wastewater could be desirably removed. Desirable adaptation, excellent performance and wide distribution will make strain GJEE142 the hopeful strain in wastewater treatment.

Low temperature pyrolytic biochar is a preferred choice for sulfonamide-Cu(II) contaminated soil remediation in tropical climate region

Biochar is getting increasing consideration for eco-friendly soil amendment and environmental remediation. Once added to the soil, biochar would undergo the natural ageing process, affecting its physicochemical properties and, as a result, the adsorption and immobilization of pollutants in the water and soil. To evaluate the high/low temperature pyrolyzed biochar performance on complex contaminants and the effect of climate ageing, the batch experiments were conducted on the adsorption of the pollutants of antibiotics sulfapyridine (SPY) and a typical coexisting heavy metal Cu²⁺ as one or binary system on low/high pyrolytic temperature biochars before and after the simulated tropical climate and frigid climate region ageing treatment. The results showed that high-temperature ageing could enhance the SPY adsorption in biochar-amended soil. The SPY sorption mechanism was fully elucidated, and the result confirmed that H-bonding was the dominant role in biochar-amended soil, and π-π electron-donor-acceptor (EDA) interaction and micro-pore filling was another factor for SPY adsorption. This study could lead to the conclusion that low-temperature pyrolytic biochar is a better option for sulfonamide-Cu(II) contaminated soil remediation in tropical regions.

The capability of chloramphenicol biotransformation of Klebsiella sp. YB1 under cadmium stress and its genome analysis

Co-contamination by antibiotics and heavy metal is common in the environment, however, there is scarce information about antibiotics biodegradation under heavy metals stress. In this study, Klebsiella sp. Strain YB1 was isolated which is capable of biodegrading chloramphenicol (CAP) with a biodegradation efficiency of 22.41% at an initial CAP of 10 mg L^-1 within 2 days. CAP biodegradation which fitted well with the first-order kinetics. YB1 still degrades CAP under Cd stress, however 10 mg L^-1 Cd inhibited CAP biodegradation by 15.1%. Biotransformation pathways remained the same under Cd stress, but two new products (Cmpd 19 and Cmpd 20) were identified. Five parallel metabolism pathways of CAP were proposed with/without Cd stress, including one novel pathway (pathway 5) that has not been reported before. In pathway 5, the initial reaction was oxidation of CAP by disruption of C-C bond at the side chain of C1 and C2 with the formation of 4-nitrobenzyl alcohol and CY7, then these intermediates were oxidized into p-nitrobenzoic acid and CY1, respectively. CAP acetyltransferase and nitroreductase and 2,3/4,5-dioxygenase may play an important role in CAP biodegradation through genome analysis and prediction. This study deepens our understanding of mechanism of antibiotic degradation under heavy metal stress in the environment.

Differential Gene Expression and Metabolic Pathway Analysis of Cladophora rupestris under Pb Stress Conditions

This study aimed to analyze the transcriptome of C. rupestris under Pb²⁺ stress by using high-throughput sequencing technology, observe the changes of gene expression and metabolic pathway after three and five days under 1.0 and 5.0 mg/L of Pb²⁺ treatment, and analyze the differentially expressed genes (DEGs) and related functional genes after Pb²⁺ treatment. Metabolic pathways were revealed through Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. Results show that DEGs increased significantly with the increase of Pb²⁺ concentration and stress time. A total of 32 genes were closely related to Pb²⁺ stress response. GO analysis identified two major transporter proteins, namely, ATP-binding transport protein-related (ABC transporters) and zinc finger CCHC domain containing protein (Zfp) in C. rupestris. Pthr19248, pthr19211, Zfp pthr23002, Zfp p48znf pthr12681, Zfp 294 pthr12389, and Zfp pthr23067 played important roles against Pb²⁺ toxicity and its absorption in C. rupestris. KEGG pathway analysis suggested that ABCA1, ATM, and ABCD3 were closely related to Pb²⁺ absorption. Pb²⁺ stress was mainly involved in metallothionein (MT), plant hormone signal transduction, ABC transporters, and glutathione (GSH) metabolism.

Copper exposure effects on antibiotic degradation in swine manure vary between mesophilic and thermophilic conditions

Antibiotic and heavy metal commonly coexist in manure. This study investigated the effect of Cu exposure on antibiotic dissipation in swine manure under two typical temperature (mesophilic and thermophilic) conditions in composting, focusing on biodegradation behaviors. The results showed that Cu promoted the dissipation of norfloxacin and sulfamethazine (SMZ) in solid swine manure under mesophilic conditions at initial concentrations ranging from 407.8 to 1353.0 mg·kg^-1 but insignificantly influenced or even inhibited their dissipation under thermophilic conditions. A liquid manure suspension culture experiment was designed to elucidate the response of SMZ biodegradation to Cu. In this manure suspension, biodegradation was the major mechanism for SMZ removal, but SMZ biodegradation was decreased from 23.2 % to 5.5 % when the Cu concentration increased from 0 to 10 mg L^-1. Mesophilic and heat-resistant SMZ-degrading bacterial inoculants were subsequently prepared using 21 SMZ-degrading bacteria that were isolated and identified from manure suspension cultures. Inoculating both mesophilic and heat-resistant SMZ-degrading bacterial inoculants enhanced SMZ degradation in sterilized manure suspensions without Cu addition, however only mesophilic SMZ-degrading inoculum improved SMZ degradation after Cu addition. In the presence of Cu, the heat-resistant SMZ-degrading inoculum failed to enhance SMZ removal in manure suspensions. Our findings can help to answer why Cu has varied effects on antibiotic degradation during manure composting.

Response of fungi-microalgae pellets to copper regulation in the removal of sulfonamides and release of dissolved organic matters

Both sulfonamides (SAs) and copper (Cu(II)) were frequently detected together in swine wastewater. In this study, the regulation of Cu(II) on SAs adsorption and release of dissolved organic matters (DOMs) by fungi-microalgae pellets (FM-pellets) were investigated. Aspergillus oryzae pellets were prepared for combination with Chlorella vulgaris and the optimal conditions were at agitation speed of 130 rpm, fungi to microalgae ratio of 10:1 and the combined time of 3 h with the highest combination efficiency of 98.65%. The results showed that adsorption was the main mechanism for SAs removal. FM-pellets exhibited a high SAs adsorption potential within 6 h, and the adsorption capacity of sulfamethazine (SMZ), sulfamonomethoxine (SMM) and sulfamethoxazole (SMX) was 1.07, 0.94 and 1.67 mg/g, respectively. Furthermore, the removal of SMX, SMZ and SMM was greatly promoted from 62.31% to 85.21%, 58.71-67.91% and 64.17-80.31%, respectively, under the presence of 2 mg/L Cu(II) through ion exchange and adsorption bridging. DOMs were analyzed by the parallel factor (PARAFAC) to demonstrate the response mechanism of FM-pellets to Cu(II). Protein-like substances and NADH in DOMs released by FM-pellets formed complexes with Cu(II) to alleviate the damage on the organism. These findings provide new insights into the mechanism and response of Cu(II) in the removal of SAs by FM-pellets.

Mechanism for biodegradation of sulfamethazine by Bacillus cereus H38

Degradation of sulfonamides (SAs) by microorganisms has become a focus of current research. Sulfamethazine (SMZ) is a type of SA widely used in the livestock and poultry industry. However, understanding the intermediate products, degradation pathways and mechanism of SMZ biodegradation is limited at present. In this study, a SMZ degrading bacterium Bacillus cereus H38, which can use SMZ as its only carbon source, was isolated from farmland soil. The bacterium was gram-positive with rod-shaped cells. The effects of initial SMZ concentration, pH, temperature and amount of inoculation on the biodegradation of SMZ were investigated by a single factor experiment. The results showed that the maximum degradation rate of SMZ was achieved in the environmental conditions at an initial SMZ concentration of 5 mg/L, pH of 7.0, temperature of 25 °C and inoculation amount of 5%. Under these optimum degradation conditions, strain H38 can completely degrade SMZ within 3 days. The effects of intracellular enzymes, extracellular enzymes and periplasmic enzymes on the SMZ degradation process were compared. It was found that intracellular enzymes contributed the most to the biodegradation of SMZ, and the degradation rate approached 70%. Three possible intermediates were identified by LC-MS/MS, and two degradation pathways were proposed. Whole genome sequencing results showed that the genome size of strain H38 was 5,477,631 bp, including 5599 coding sequences (CDSs), and the GC content was 35.21%. In addition, functional annotation of CDSs was performed to analyze the metabolic pathways of nitrogen and sulfur in strain H38 combining genomics and bioinformatics. This study proposes new insights into the mechanism for biodegradation of SAs and will inform future research.

The survival and removal mechanism of Sphingobacterium changzhouense TC931 under tetracycline stress and its' ecological safety after application

Sphingobacterium changzhouense TC931 was isolated as a novel TC (tetracycline) removal bacterium through adsorption on extracellular polymerase substances (EPS) and cellular surface and biodegradation. TC biodegradation efficiency by strain TC931 was affected by solution initial pH and carbon source. Polysaccharides and hydrocarbons in EPS and cellular surface were responsible for TC biosorption. Eight possible biodegradation products were identified and the biodegradation pathway was proposed. Strain TC931 was rich in antibiotic resistance genes, and tetX_-TC931 and antibiotics resistance genome island (GI) may be acquired via horizontal gene transfer in early evolutionary history. The GI was incomplete and may stable in strain TC931, but it could develop into an intact and transferability GI with help of other mobile genetic elements. This work offers a theoretical basis for understanding the survival and biodegradation mechanisms of S. changzhouense TC931 under TC stress, and offers an ecological safety assessment for its application in environmental bioremediation.

Biotransformation mechanism of Vibrio diabolicus to sulfamethoxazole at transcriptional level

Sulfamethoxazole (SMX) has attracted much attention due to its high probability of detection in the environment. Marine bacteria Vibrio diabolicus strain L2-2 has been proven to be able to transform SMX. In this study, the potential resistance and biotransformation mechanism of strain L2-2 to SMX, and key genes responses to SMX at environmental concentrations were researched. KEGG pathways were enriched by down-regulated genes including degradation of L-Leucine, L-Isoleucine, and fatty acid metabolism. Resistance mechanism could be concluded as the enhancement of membrane transport, antioxidation, response regulator, repair proteins, and ribosome protection. Biotransformation genes might involve in arylamine N-acetyltransferases (nat), cytochrome c553 (cyc-553) and acyl-CoA synthetase (acs). At the environmental concentration of SMX (0.1-10 μg/L), nat was not be activated, which meant the acetylation of SMX might not occur in the environment; however, cyc-553 was up-regulated under SMX stress of 1 μg/L, which indicated the hydroxylation of SMX could occur in the environment. Besides, the membrane transport and antioxidation of strain L2-2 could be activated under SMX stress of 10 μg/L. The results provided a better understanding of resistance and biotransformation of bacteria to SMX and would support related researches about the impacts of environmental antibiotics.