Aptamer functionalized gold nanoparticles based fluorescent probe for the detection of mercury (II) ion in aqueous solution

Naphthalimide-based AIE-active receptor: HSO4-/SO42- sensing and detection of Pb2+ by receptor-anion ensemble in aqueous medium

Herein we report a naphthalimide-chromophore based blue light emitting Aggregation-Induced Emission (AIE) active fluorescent chemo-sensor for the selective turn-on fluorescent sensing of HSO4-/SO42- ions in the aqueous medium through in-depth spectroscopic and microscopic analysis. HSO4-/SO42-sensing in aqueous environment is quite challenging due to its high hydration energy, however Nap-1 showed a detection limit down to the micromolar range without any interference from the other tested competitive anions. The sensing mechanism has been discussed thoroughly. Nap-1 was further applied in detection of HSO4-/SO42- ions in real water as well as in fabrication of an economical paper strip model. The receptor-anion ensemble was further used for the sensing of heavy metal ions such as Pb2+ in the micromolar range. Nap-1 was used for the construction of two inputs INHIBIT type molecular logic gate.

Layer-by-Layer Immobilization of DNA Aptamers on Ag-Incorporated Co-Succinate Metal-Organic Framework for Hg(II) Detection

Layer-by-layer (LbL) immobilization of DNA aptamers in the realm of electrochemical detection of heavy metal ions (HMIs) offers an enhancement in specificity, sensitivity, and low detection limits by leveraging the cross-reactivity obtained from multiple interactions between immobilized aptamers and developed material surfaces. In this research, we present a LbL approach for the immobilization of thiol- and amino-modified DNA aptamers on a Ag-incorporated cobalt-succinate metal-organic framework (MOF) (Ag@Co-Succinate) to achieve a cross-reactive effect on the electrochemical behavior of the sensor. The solvothermal method was utilized to synthesize Ag@Co-Succinate, which was also characterized through various techniques to elucidate its structure, morphology, and presence of functional groups, confirming its suitability as a host matrix for immobilizing both aptamers. The Ag@Co-Succinate aptasensor exhibited extraordinary sensitivity and selectivity towards Hg(II) ions in electrochemical detection, attributed to the unique binding properties of the immobilized aptamers. The exceptional limit of detection of 0.3 nM ensures the sensor's suitability for trace-level Hg(II) detection in various environmental and analytical applications. Furthermore, the developed sensor demonstrated outstanding repeatability, highlighting its potential for long-term and reliable monitoring of Hg(II).

Traditional methods and biosensors for detecting disinfection by-products in water: A review

In recent years, pollution caused by disinfection by-products (DBPs) has become a global concern. Initially, there were fewer contaminants, and the mechanism of their generation was unclear; however, the number of contaminants has increased exponentially as a result of rapid industrialization and numerous economic activities (e.q., during the outbreak of COVID-19 a surge in the use of chlorinated disinfectants was observed). DBP toxicity results in various adverse health effects and organ failure in humans. In addition, it profoundly affects other forms of life, including animals, plants, and microorganisms. This review comprehensively discusses the pre-treatment methods of traditional and emerging DBPs and the technologies applied for their detection. Additionally, this paper provides a detailed discussion of the principles, applicability, and characteristics of traditional large-scale instrumentation methods (such as gas/liquid/ion chromatography coupled with mass spectrometry) for detecting DBPs based on their respective detection techniques. At the same time, the design, functionality, classification, and characteristics of rapid detection technologies (such as biosensors) are also detailed and analyzed.

Fluorescence detection of three types of pollutants based on fluorescence resonance energy transfer and its comparison with colorimetric detection

This study aimed at three representative pollutants, benzidine, cyromazine, and streptomycin, which were commonly used and posed a great threat to both environment and human health, mainly to explore a fast, simple, sensitive, visible naked-eye detection method. Colorimetric detection by gold nanoparticles (AuNPs) was first attempted. The cross-linking reaction occurred owing to the strong forces between the targets and AuNPs, leading to aggregation and color change. However, large-scale aggregation was easily formed and settled, which failed to achieve accurate quantification. Thus, AuNPs are considered to be used in fluorescence detection as reaction bridges. The introduction of AuNPs could effectively quench the fluorescence of Rhodamine B based on fluorescence resonance energy transfer (FRET). Moreover, a classical "on-off-on" fluorescence detection system was constructed based on nanomaterials. When AuNPs were added, the red fluorescence of the Rhodamine B solution could be effectively quenched (the "off" reaction). However, the tight cross-linking reaction between the three targets and AuNPs occurred through the strong affinity, causing Rhodamine B to dissociate in the solution. The fluorescence was rapidly restored, accompanied by a significant enhancement of fluorescence intensity (the "on" reaction). The fluorescent responses toward the three targets were established, resulting in good linearity in a wide range with low detection limits. Moreover, through the investigation of specificity, the fluorescence sensor exhibited satisfying selectivity and high binding affinity to the detected targets among the same types of inferences, indicating great potential for practical application. This simple, fast and sensitive fluorescence detection system was first used for simultaneously detecting three types of pollutants and finally successfully applied to real samples.

Vinyl-functionalized polyphenolic-carbon dot-based fluorometric turn-off-on biosensor for the dual detection of mercury and cysteine and their in vivo sensing in zebrafish larvae

The fluorometric turn-off-on biosensor was developed for the ultra-sensitive detection of mercury (Hg²⁺) and cysteine (Cys) utilizing the highly fluorescent carbon dots (CDs). Herein, the sophisticated low-temperature reflux-mediated reaction was adopted using precursors namely citric acid (CA) and polyphenolic kaempferol (KMP) by using dimethylformamide (DMF) as a solvent. The resulting CDs (i.e., CKCDs) were in the highly negative charged groups (-OH) presented with a bright-orange fluorescence. These CKCDs were functionalized with 4-vinylaniline (4-VA) by employing EDC/NHS coupling reaction, which switched its photoluminescence (PL) towards the strong-blue colored emission and termed as V-CKCDs. The functionalized V-CKCDs can be capable enough to detect mercury via the strong electrostatic interactions between positively charged Hg²⁺ cations and negatively charged anions (-OH groups). Hence, an adequate fluorescence quenching was observed in V-CKCDs with the lowest concentrations of Hg²⁺ around 0.5 μM. Significantly, after adding the complex of V-CKCDs-Hg²⁺ to the Cys, the fluorescence enhancement was observed. This might be attributed from the strong interactions between Hg²⁺ in the fluorescence sensing system and thiol (-SH) moieties from the Cys. The developed V-CKCDs are highly sensitive for detecting Hg²⁺ and Cys, which showed detection limits of 10.6 and 42. 48 nM, respectively. Also, the in vivo studies were investigated in zebrafish larvae using V-CKCDs for the detection of Hg²⁺ and Cys. The V-CKCDs were investigated in the real water samples and human serum to detect Hg²⁺ and Cys, respectively.

A Simple and Rapid “Signal On” Fluorescent Sensor for Detecting Mercury (II) Based on the Molecular Beacon Aptamer

Biosensors for mercury (II) (Hg2+) with high sensitivity are urgently required for food safety, ecosystem protection and disease prevention. In this study, a simple and fast detection method of Hg2+ based on the molecular beacon aptamer was established, according to the principle that Hg2+ could change the structure of the molecular beacon aptamer, resulting in the changed fluorescence intensity. All of the detection conditions were optimized. It was found that an optimal molecular beacon aptamer MB3 showed the optimal response signal in the optimized reaction environment, which was 0.08 μmol/L MB3, 50 mmol/L tris buffer (40 mmol/L NaCl, 10 mmol/L MgCl2, pH 8.1), and a 10 min reaction. Under the optimal detection conditions, the molecular beacon aptamer sensor showed a linear response to Hg2+ concentration within a range from 0.4 to 10 μmol/L and with a detection limit of 0.2254 μmol/L and a precision of 4.9%. The recovery rates of Hg2+ in water samples ranged from 95.00% to 99.25%. The method was convenient and rapid, which could realize the rapid detection of mercury ions in water samples.

A general configurational strategy to quencher-free aptasensors

The aptasensor, developed from the aptamer, has aroused wide concern in recent years owing to its high sensitivity and specificity. However, the quenching unit involved in the most of the aptasensors is indispensable to the fabrication of an aptasensor, which would undoubtedly increase the complexity of the device. In this study, a facile strategy was developed for construction of the quencher-free aptasensors, in which the quenching units can be omitted, and only an aptamer strand and a fluorophore are necessary. Distinguishable from the configuration of the traditional ones, the aptasensors developed in this work rationally employed the intrinsic quenching abilities of the analytes to directly regulate the fluorescence of the fluorophore. Furthermore, the aptamer strand as a discriminatory unit efficiently captured the corresponding analytes to around the fluorophores. As a result, the fluorescence of the aptasensor can be significantly sensitive to the analytes. The generality of the current design is evidenced by the successful fabrication of seven quencher-free aptasensors for Cu²⁺, Ag⁺, Hg²⁺, ATP and dopamine through 6-FAM labeling aptamers of Cu²⁺, Ag⁺, Hg²⁺, ATP, dopamine, 5-TAMRA and ROX labeling aptamers of Cu²⁺. Present strategy endows an aptasensor with a simple structure, high selectivity and fine sensitivity. The configuration of the quencher-free aptasensors fabricated in this work can be readily utilized for more aptasensors.

Limitations for colorimetric aggregation assay of metal ions and ways of their overcoming

The development of analytical methods for the determination of metal ions in water is one of the priority tasks for efficient environmental monitoring. The use of modified gold nanoparticles and the colorimetric detection of their aggregation initiated by ions binding with specific receptors on the nanoparticle surface has high potential for simple testing. However, the limits of this approach and the parameters determining the assay sensitivity are not clear, and the possibilities of different assay formats are estimated only empirically. We have proposed a mathematical description of the aggregation processes in the assay and have estimated the detection limits of an aptamer-based assay of Pb2+ ions theoretically and experimentally. In the studied assay, gold nanoparticles modified with G,T-enriched aptamer were used, and their aggregation caused by the interaction with Pb2+ ions was controlled via a color change. The experimentally determined limit of Pb2+ detection was 700 ppb, which was in good agreement with theoretical calculations. An examination of the model showed that the limiting parameter of the assay is the binding constant of the aptamer-Pb2+ ion interaction. To overcome this limitation without searching for alternate receptors, two methods have been proposed, namely additional aggregation-causing components or centrifugation. These approaches lowered the detection limit to 150 ppb and even to 0.4 ppb. The second value accords with regulatory demands for the permissible levels of water source contamination, and the corresponding approach has significant competitive potential due to its rapidity, simple implementation, and the visual assessment of the assay results.

Metal Nanostructures for Environmental Pollutant Detection Based on Fluorescence

Heavy metal ions and pesticides are extremely dangerous for human health and environment and an accurate detection is an essential step to monitor their levels in water. The standard and most used methods for detecting these pollutants are sophisticated and expensive analytical techniques. However, recent technological advancements have allowed the development of alternative techniques based on optical properties of noble metal nanomaterials, which provide many advantages such as ultrasensitive detection, fast turnover, simple protocols, in situ sampling, on-site capability and reduced cost. This paper provides a review of the most common photo-physical effects impact on the fluorescence of metal nanomaterials and how these processes can be exploited for the detection of pollutant species. The final aim is to provide readers with an updated guide on fluorescent metallic nano-systems used as optical sensors of heavy metal ions and pesticides in water.

Application of DNA-Nanosensor for Environmental Monitoring: Recent Advances and Perspectives

PURPOSE OF REVIEW

Environmental pollutants are threat to human beings. Pollutants can lead to human health and environment hazards. The purpose of this review is to summarize the work done on detection of environmental pollutants using DNA nanosensors and challenges in the areas that can be focused for safe environment.

RECENT FINDINGS

Most of the DNA-based nanosensors designed so far use DNA as recognition element. ssDNA, dsDNA, complementary mismatched DNA, aptamers, and G-quadruplex DNA are commonly used as probes in nanosensors. More and more DNA sequences are being designed that can specifically detect various pollutants even simultaneously in complex milk, wastewater, soil, blood, tap water, river, and pond water samples. The feasibility of direct detection, ease of designing, and analysis makes DNA nanosensors fit for future point-of-care applications.

SUMMARY

DNA nanosensors are easy to design and have good sensitivity. DNA component and nanomaterials can be designed in a controlled manner to detect various environmental pollutants. This review identifies the recent advances in DNA nanosensor designing and opportunities available to design nanosensors for unexplored pathogens, antibiotics, pesticides, GMO, heavy metals, and other toxic pollutant.

Rituximab-specific DNA aptamers are able to selectively recognize heat-treated antibodies

The monoclonal anti-CD20 IgG1 antibody rituximab is used as a first-line treatment for B cell lymphoma. Like all therapeutic antibodies, it is a complex protein for which both safety and efficacy heavily depend on the integrity of its three-dimensional structure. Aptamers, short oligonucleotides with a distinct fold, can be used to detect minor modifications or structural variations of a molecule or protein. To detect antibody molecules in a fold state occurring prior to protein precipitation, we generated DNA aptamers that were selected for extensively heat-treated rituximab. Using the magnetic bead-based systematic evolution of ligands by exponential enrichment (SELEX), we obtained six DNA aptamer sequences (40-mers) specific for 80°C heat-treated rituximab. In silico fold prediction and circular dichroism analysis revealed a G-quadruplex structure for one aptamer, while all others exhibited a B-DNA helix. Binding affinities ranging from 8.8–86.7 nM were determined by an enzyme-linked apta-sorbent assay (ELASA). Aptamers additionally detected structural changes in rituximab treated for 5 min at 70°C, although with lower binding activity. Notably, none of the aptamers recognized rituximab in its native state nor did they detect the antibody after it was exposed to lower temperatures or different physical stressors. Aptamers also reacted with the therapeutic antibody adalimumab incubated at 80°C suggesting similar aptamer binding motifs located on extensively heat-treated IgG1 antibodies. Within this work, we obtained the first aptamer panel, which is specific for an antibody fold state specifically present prior to protein aggregation. This study demonstrates the potential of aptamer selection for specific stress-based protein variants, which has potential impact for quality control of biopharmaceuticals.

Mercuric ion detection by plasmon-enhanced spectrophotometric ellipsometer using specific oligonucleotide probes

Pollution due to heavy metal ions, including mercury, has become a major issue because of their toxicities. It is required to monitor mercury levels in aqueous media using fast and selective methods with high accuracy. Ellipsometry is a promising technique for instance when it's combined with the plasmon resonance phenomena. We reported a biosensor system available for qualitative/quantitative determination of mercuric ions in aqueous media where both the spectrophotometric ellipsometry and oligonucleotide recognition elements were used. A single step assay using both a linear (ProbeL) and a hair-pin (ProbeH) type oligonucleotide probe as a recognition element, in addition to a sandwich-type (ProbeLS) assay were developed and compared. The detection limits were 0.23 nM, 0.03 nM and 0.15 pM for ProbeL, ProbeH and ProbeLS, respectively. The detection range was between 0.05 nM and 100 nM Hg²⁺ for all assays proposed herein.

A review on nanostructure-based mercury (II) detection and monitoring focusing on aptamer and oligonucleotide biosensors

Heavy metal ion pollution is a severe problem in environmental protection and especially in human health due to their bioaccumulation in organisms. Mercury (II) (Hg²⁺), even at low concentrations, can lead to DNA damage and give permanent harm to the central nervous system by easily passing through biological membranes. Therefore, sensitive detection and monitoring of Hg²⁺ is of particular interest with significant specificity. In this review, aptamer-based strategies in combination with nanostructures as well as several other strategies to solve addressed problems in sensor development for Hg²⁺ are discussed in detail. In particular, the analytical performance of different aptamer and oligonucleotide-based strategies using different signal improvement approaches based on nanoparticles were compared within each strategy and in between. Although quite a number of the suggested methodologies analyzed in this review fulfills the standard requirements, further development is still needed on real sample analysis and analytical performance parameters.

Aptamer Hybrid Nanocomplexes as Targeting Components for Antibiotic/Gene Delivery Systems and Diagnostics: A Review

With the passage of time and more advanced societies, there is a greater emergence and incidence of disease and necessity for improved treatments. In this respect, nowadays, aptamers, with their better efficiency at diagnosing and treating diseases than antibodies, are at the center of attention. Here, in this review, we first investigate aptamer function in various fields (such as the detection and remedy of pathogens, modification of nanoparticles, antibiotic delivery and gene delivery). Then, we present aptamer-conjugated nanocomplexes as the main and efficient factor in gene delivery. Finally, we focus on the targeted co-delivery of genes and drugs by nanocomplexes, as a new exciting approach for cancer treatment in the decades ahead to meet our growing societal needs.

A novel strategy for detection of small molecules based on aptamer/gold nanoparticles/graphitic carbon nitride nanosheets as fluorescent biosensor

Herein, a novel ultrasensitive strategy has been developed by designing a label free fluorescent nano-aptasensor for monitoring of small moecules in human plasma. In this nano-aptasensor, graphitic carbon nitride nanosheets were used as fluorescent probe. The fluorescence intensity of the probe was decreased by interaction between graphitic carbon nitride nanosheets and label-free aptamer/gold nanoparticles conjugate, via Fluorescence resonance energy transfer mechanism. Upon addition of the analyte, the fluorescence of graphitic carbon nitride nanosheets was restored due to the aptamer/analyte interaction, and the aggregation of gold nanoparticles in the presence of salt. The influence of various factors on sensing method was investigated, and under the approved conditions, the fluorescence signal showed a linear relation with Digoxin concentration in the range of 10-500 ng L^-1 with limit of detection down to 3.2 ng L^-1 relative standard deviations for 25, 100 and 500 ng L^-1 of analyte concentrations were 2.6, 4.0 and 6.5%, respectively. This strategy provided a simple, rapid, cost effective and reproducible experimental model, with successful application for determination of Digoxin in plasma samples without any pretreatment steps.

Fluorescent, colourimetric, and ratiometric probes based on diverse fluorophore motifs for mercuric(II) ion (Hg2+) sensing: highlights from 2011 to 2019

Though it has not been shown to deliver any biological importance, mercuric(II) ion (Hg²⁺) is a deleterious cation which poses grievous effects to the human body and/or the ecosystem, hence, the need for its sensitive and selective monitoring in both environmental and biological systems. Over the years, there has been a great deal of work in the use of fluorescent, colourimetric, and/or ratiometric probes for Hg²⁺ recognition. Essentially, the purpose of this review article is to give an overview of the advances made in the constructions of such probes based on the works reported in the period from 2011 to 2019. Discussion in this review work has been tailored to the kinds of fluorophore scaffolds used for the constructions of the probes reported. Selected examples of probes under each fluorophore subcategory were discussed with mentions of the typically determined parameters in an analytical sensing operation, including modulation in fluorescence intensity, optimal pH, detection limit, and association constant. The environmental and biological application ends of the probes were also touched where necessary. Important generalisations and conclusions were given at the end of the review. This review article highlights 196 references.

Mechanochemical synthesis of fluorescein-based receptor for CN- ion detection in aqueous solution and cigarette smoke residue

A facile green method for the mechanochemical synthesis of Schiff base phenylhydrazono-N-methylene fluorescein (PHMF) with 95% yields has been established. The synthesized receptor assists in the naked-eye detection of CN^- ions in organic and aqueous media, and F^- ions in acetonitrile over a series of anions with a color transfer from colorless to pink. A redshift of 160 nm of PHMF-CN^- complex in the absorbance spectrum and a turn-on response in the fluorescence spectrum were observed, respectively, at λmax 345 to 515 and 519 nm. A strong interaction of PHMF with CN^- and F^- ions forming a 1:3 binding stoichiometry has been noted in this study. In an aqueous medium for CN^- ion, the lower limit of detection (LOD) is defined as 9.204 nM, which is quite better in terms of sensitivity. In addition, PHMF's paper-strip sensor for rapid real-time CN^- ion sensing was found to be sufficiently sensitive to successfully detect CN^- ion in water and a solid state, resulting in a portable device for detecting cyanide ions. In acetonitrile, the receptor's ability to detect CN^- ion in cigarette smoke residue was also satisfactorily achieved. Graphical Abstract.

Alginate-based magnetic nanosorbent immobilized with aptamer for selective and high adsorption of Hg2+ in water samples

Alginate-coated magnetic nanocluster (MNC) immobilized with Hg²⁺-specific aptamer was synthesized to obtain the nanosorbent with high adsorption capacity and high selectivity for trace analysis of inorganic mercury (Hg²⁺) in water samples. Magnetite nanoparticle was first synthesized by a co-precipitation of iron precursors in the presence of alginate to obtain alginate-coated MNC, followed by immobilization with avidin. Hg²⁺-Specific DNA aptamer labeled with biotin was then conjugated on the MNC surface via specific avidin-biotin interaction to form aptamer-immobilized MNC. Coating the MNC with alginate can improve its water dispersibility and also increase its adsorption capacity toward Hg²⁺ (350 mg/g). It exhibited high selectivity through thymine-Hg²⁺-thymine (T-Hg²⁺-T) interaction with high tolerance to other foreign ions. This nanosorbent showed linearity over the Hg²⁺ concentration range of 0.2-10 μg/L with a correlation coefficient of 0.9977, limit of detection of 0.46 μg/L, and enrichment factor of 13. Moreover, it also showed a potential for detection of Hg²⁺ in drinking and tap water samples with satisfactory recoveries.

A low-cost paper-based aptasensor for simultaneous trace-level monitoring of mercury (II) and silver (I) ions

Mercury (Hg²⁺) and silver (Ag⁺) ions possess the harmful effects on public health and environment that makes it essential to develop the sensing techniques with great sensitivity for the ions. Metal ions commonly coexist in the different biological and environmental systems. Hence, it is an urgent demand to design a simple method for the simultaneous detection of metal ions, peculiarly in the case of coexisting Hg²⁺ and Ag⁺. This study introduces a low-cost paper-based aptasensor to monitor Hg²⁺ and Ag⁺, simultaneously. The strategy of the sensing array is according to the conformational changes of Hg²⁺- and Ag⁺-specific aptamers and their release from the GO surface after the injection of the target sample on the sensing platform. Through monitoring the fluorescence recovery changes against the concentrations of the ions, Hg²⁺ and Ag⁺ can be determined as low as 1.33 and 1.01 pM. The paper-based aptasensor can simultaneously detect the ions within about 10 min. The aptasensor is applied prosperously to monitor Hg²⁺ and Ag⁺ in human serum, water, and milk. The designed aptasensor with the main advantages of simplicity and feasibility holds the supreme potential to develop a cost-effective sensing method for environmental monitoring, food control, and human diagnostics.

Colorimetric aptasensor for the detection of mercury based on signal intensification by rolling circle amplification

Techniques that are sensitive to detect mercury ion (Hg²⁺) are very important, due to its serious threat to public health and food security. In this work, a colorimetric aptasensor was fabricated for the detection of Hg²⁺ based on rolling circle amplification (RCA). The aptamer was immobilized onto the microplate and hybridized with its complementary strand (cDNA₁) which linked with a primer for triggering the RCA reaction of circular template. The successfully RCA process led to the formation of long ssDNA chains on the microplate, which created many hybridized DNA fragments for bio-cDNA₂. The tagged amount of horseradish peroxidase (HRP) was enhanced through the avidin/biotin binding between avi-HRP and bio-cDNA₂. In the addition of TMB-H₂O₂, HRP was catalyzed and generated an optical signal. However, in the presence of target, Hg²⁺ specifically and preferentially bound with aptamer and formed a strong and stable T-Hg²⁺-T complex, which led to the release of cDNA₁ and HRP cluster. Consequently, the optical signal decreased. Our results showed that the limit of detection (LOD) of this system was 1.6 nM with excellent specificity, and that the detection signals were enhanced by up to 18 times under RCA conditions when compared with detections without RCA. This method has been successfully used to detect Hg²⁺ in water samples with a recovery of 98%-105.74%.

Enhanced functional DNA biosensor for distance-based read-by-eye quantification of various analytes based on starch-hydrolysis-adjusted wettability change in paper devices

Low-cost, equipment-free and quantitative detection of a wide range of analytes of interest at home and in the field holds the potential to revolutionize disease diagnosis, environmental pollution monitoring, and food safety analysis. Herein, we describe a functional DNA biosensor for the first time that integrates analyte-directed assembly of enzyme-coated microbead probes for robust yet efficient signal amplification with a simple quantitative detection motif of distance measurement on portable paper devices based on starch-hydrolysis-adjusted wettability change of paper. Its utility is well demonstrated with highly sensitive and specific detection of model analytes ranging from adenosine (an important small biomolecule; 1.6 μM detection limit) to interferon-γ (a protein marker; 0.3 nM detection limit) and Pb²⁺ (a highly toxic metal ion; 0.5 nM detection limit) by simply using an inexpensive, ubiquitous ruler. The developed general method with the distance-measuring readout should be easily tailored for the portable, read-by-eye, quantitative detection of many other types of analytical targets by taking advantage of their specific functional DNA partners like aptamers and DNAzymes.

A functional DNA sensor was initially developed for the distance-measuring quantification of various analytes based on the starch-hydrolysis-adjusted wettability change of paper.

Aggregation-based determination of mercury(II) using DNA-modified single gold nanoparticle, T-Hg(II)-T interaction, and single-particle ICP-MS

An ultrasensitive assay is described for the detection and determination of Hg²⁺(aq) in water samples based on single-particle inductively-coupled plasma/mass spectrometry (spICP-MS). In the presence of Hg²⁺(aq), AuNPs modified with a segment of single-stranded DNA aggregate due to the formation of the well-known thymine (T)-Hg²⁺-T complex. Single particle (sp) ICP-MS is used quantify the degree of aggregation by the overall decrease in number of detected AuNPs or NP aggregates. Compared with most other Hg²⁺ assays that use the same principle of aggregation-dispersion with DNA modified AuNPs, this method has a much lower detection limit of (0.031 ng L^-1, 155 fM) and a wider (10,000-fold) linear range (up to 1 μg L^-1). The method also showed good practical potential because of its minimal interference from the water sample matrix. Graphical abstractSchematic representation of Hg²⁺ determination by using modified AuNP probes measured by spICP-MS. AuNPs pulses detected in ICP-MS is relative to the aggregation status of AuNPs based on thymine-Hg²⁺-thymine interaction.

Colorimetric Technique for Antimony Detection Based on the Use of Gold Nanoparticles Conjugated with Poly-A Oligonucleotide

A simple and rapid positive–negative colorimetric approach to determine the presence of antimony ions based on the use of gold nanoparticles conjugated with oligonucleotide (poly-A sequence) is developed. Colorimetric measurements reveal that the aggregates of modified gold nanoparticles were afforded after adding antimony ions, thus changing the solution color from pink to blue. The results of aptamer’s interaction on the gold nanoparticle surface with the target analyte can be detected either by photometry or by the naked eye. The realized assay provides rapid (2 min), sensitive (detection limit 10 ng/mL), specific, and precise (variation coefficient less than 3.8%) detection of antimony (III) in drinking water.

Biotoxic trace metal ion detection by enzymatic inhibition of a glucose biosensor based on a poly(brilliant green)-deep eutectic solvent/carbon nanotube modified electrode

A highly sensitive glucose oxidase (GOx) electrochemical biosensor for the determination of the biotoxic trace metal ions Hg²⁺, Cd²⁺, Pb²⁺ and Cr^VI by enzyme inhibition has been developed. GOx was immobilized on a novel sensing platform consisting of poly(brilliant green) films formed by potential cycling electropolymerization in sulfuric acid doped ethaline deep eutectic solvent on multiwalled carbon nanotube modified glassy carbon electrodes. Polymer films produced in this medium presented more uniform morphology and better electrochemical sensing properties than those prepared in aqueous solution. The inhibitor concentration necessary to give 50% inhibition, I₅₀, was used for the determination of the type of reversible inhibition, and the relationship between I₅₀ and the inhibition constant K_i is discussed. The new biosensor was successfully used for the determination of biotoxic trace metal ions with a nanomolar limit of detection, lower than in the literature, very good repeatability, stability and selectivity, and was applied successfully to detection of the toxic trace metal species in milk samples.

A simple paper-based aptasensor for ultrasensitive detection of lead (II) ion

In this study, a simple paper-based aptasensor has been developed for the ultrasensitive detection of lead (Pb²⁺) ion within about 10 min. The aptasensor has been successfully designed by taking advantages of the Förster Resonance Energy Transfer (FRET) process and the super fluorescence quenching property of graphene oxide (GO) sheet. The sensing mechanism of the aptasensor is based on the conformational switch of the Pb²⁺-specific aptamer from a random coil to a G-quadruplex structure. An injection of Pb²⁺ on the paper-based platform induces the release of the specific aptamer from the GO surface that recovers the fluorescence emission. Under the optimal experimental conditions, there is a good linear relationship between the fluorescence recovery and the Pb²⁺concentration in the ranges of 5-70 pM and 0.07-20 nM. Moreover, the aptasensing array exhibits a high sensitivity to Pb²⁺ with an ultra-low detection limit of 0.5 pM. The developed aptasensor has been successfully applied to determine Pb²⁺ in tap water, lake water, milk, and human blood serum. The paper-based aptasensor can be efficiently utilized to detect other metal ions and biological molecules by substituting target specific aptamer.

Resettable and enzyme-free molecular logic devices for the intelligent amplification detection of multiple miRNAs via catalyzed hairpin assembly

The integration of multi-level DNA logic gates for biological diagnosis is far from being fully realized. In particular, the simplification of logical analysis to implement advanced logic diagnoses is still a critical challenge for DNA computing and bioelectronics. Here, we developed a magnetic bead/DNA system to construct a library of logic gates, enabling the sensing of multiplex target miRNAs. In this assay, the miRNA-catalyzed hairpin assembly (CHA) was successfully applied to construct two/three-input concatenated logic circuits with excellent specificity extended to design a highly sensitive multiplex detection system. Significantly, the CHA-based multiplex detection system can distinguish individual target miRNAs (such as miR-21, miR-155, and miR let-7a) under a logic function control, which presents great applications in the development of rapid and intelligent detection. Another novel feature is that the multiplex detection system can be reset by heating the output system and the magnetic separation of the computing modules. Overall, the proposed logic diagnostics with high amplification efficiency is simple, fast, low-cost, and resettable, and holds great promise in the development of biocomputing, multiparameter sensing, and intelligent disease diagnostics.

Progress in rapid optical assays for heavy metal ions based on the use of nanoparticles and receptor molecules

This review (with 230 refs.) covers recent progress in rapid optical assays for heavy metals (primarily lead and mercury as the most relevant) based on the use of nanoparticles and receptor molecules. An introduction surveys the importance, regulatory demands (such as maximum permissible concentrations) and potential and limitations of various existing methods. This is followed by a general discussion on the use of nanoparticles in optical assays of heavy metals (including properties, basic mechanisms of signal generation). The next sections cover methods for the functionalization of nanoparticles with (a) sulfur-containing compounds (used for modification of nanoparticles or added to the reaction medium), (b) nitrogen-containing compounds (such as amino acids, polypeptides, and heterocyclic molecules), and (c) oxygen-containing species (such as hydroxy and carbonyl compounds). This is continued by a specific description of specific assays based on the use of aptamers as receptors, on the use of deoxyribozymes as synthetic reaction catalysts, of G-quadruplex aptamers, of aptamers in logic gate-type of assays of linear (unstructured) aptamers ("hairpins"), and on the use of aptamers in lateral flow assays. A next section covers assays based on the employment of antibodies as receptors (used in the immunoassay development). The properties of various nanoparticles and their applicability in optical assays are also discussed in some detail. Final sections discuss the selectivity of assays, potential interferences by other cations, methods for their elimination, and also matrix effects and approaches for sample pretreatment. A concluding section discusses current challenges and future trends. Analysis based on enzyme inhibition assay is not treated here but enzyme-like action of some receptor molecules such as DNAzymes is discussed. Graphical abstract Schematic presentation of main principles of application of various nanoparticles with receptor molecules (S-, N-, O-containing, heterocyclic compounds, proteins, antibody, aptamers) for heavy metals ions detection. The included methods cover optical assays with description of mechanisms of interactions and signal generation.

Fluorescent Sensors for the Detection of Heavy Metal Ions in Aqueous Media

Due to the risks that water contamination implies for human health and environmental protection, monitoring the quality of water is a major concern of the present era. Therefore, in recent years several efforts have been dedicated to the development of fast, sensitive, and selective sensors for the detection of heavy metal ions. In particular, fluorescent sensors have gained in popularity due to their interesting features, such as high specificity, sensitivity, and reversibility. Thus, this review is devoted to the recent advances in fluorescent sensors for the monitoring of these contaminants, and special focus is placed on those devices based on fluorescent aptasensors, quantum dots, and organic dyes.

R-phycoerythrin proteins@ZIF-8 composite thin films for mercury ion detection

Fluorescent R-phycoerythrin proteins were encapsulated into ZIF-8 thin films for colorimetric detection of mercury ions with high sensitivity and selectivity.

Advances in aptasensors for the detection of food contaminants

Food safety is a global health objective, and foodborne diseases represent a major crisis in health. Techniques that are simple and suitable for fast screening to detect and identify pathogenic factors in the food chain are vital to ensure food safety. At present, a variety of analytical methods have been reported for the detection of pathogenic agents. Whereas the sensitivity of detection and quantification are still important challenges, we expect major advances from new assay formats and synthetic bio-recognition elements, such as aptamers. Owing to the specific folding capability of aptamers in the presence of an analyte, aptasensors have substantially and successfully been exploited for the detection of a wide range of small and large molecules (e.g., toxins, antibiotics, heavy metals, bacteria, viruses) at very low concentrations. Here, we review the use of aptasensors for the development of highly sensitive and affordable detection tools for food analysis.

A catalytic cleavage strategy for fluorometric determination of Hg(II) based on the use of a Mg(II)-dependent split DNAzyme and hairpins conjugated to gold nanoparticles

A catalytic cleavage strategy was developed for the fluorometric determination of Hg(II). The method is based on the use of a Mg(II)-dependent split DNAzyme. Fluorophore labeled hairpins were conjugated to gold nanoparticles (AuNPs) upon which fluorescence is quenched. Thymine-Hg(II)-thymine (T-Hg(II)-T) interaction causes the two DNA sequences to form an entire enzyme-strand DNA (E-DNA). The E-DNA bind to the hairpins on the AuNPs to form a Mg(II)-dependent DNAzyme structure. The circular cleavage of hairpins results in a signal amplification and in the recovery of fluorescence. The assay has a limit of detection (LOD) as low as 80 pM of Hg(II). This LOD is comparable to those obtained with other amplification strategies. The method was successfully applied to the determination of Hg(II) in Chinese herbs (Atractylodes macrocephala Koidz). Graphical abstract Schematic of a catalytic cleavage strategy based on Mg(II)-dependent split DNAzyme for fluorometric determination of Hg(II).

Metal-Polydopamine Framework as an Effective Fluorescent Quencher for Highly Sensitive Detection of Hg(II) and Ag(I) Ions through Exonuclease III Activity

In this paper, we propose a metal-polydopamine (MPDA) framework with a specific molecular probe which appears to be the most promising approach to a strong fluorescence quencher. The MPDA framework quenching ability toward various organic fluorophore such as aminoethylcoumarin acetate, 6-carboxyfluorescein (FAM), carboxyteramethylrhodamine, and Cy5 are used to establish a fluorescent biosensor that can selectively recognize Hg²⁺ and Ag⁺ ions. The fluorescent quenching efficiency was sufficient to achieve more than 96%. The MPDA framework also exhibits different affinities with ssDNA and dsDNA. In addition, the FAM-labeled ssDNA was adsorbed onto the MPDA framework, based on their interaction with the complex formed between MPDA frameworks/ssDNA taken as a sensing platform. By taking advantage of this sensor, highly sensitive and selective determination of Hg²⁺ and Ag⁺ ions is achieved through exonuclease III signal amplification activity. The detection limits of Hg²⁺ and Ag⁺ achieved to be 1.3 and 34 pM, respectively, were compared to co-existing metal ions and graphene oxide-based sensors. Furthermore, the potential applications of this study establish the highly sensitive fluorescence detection targets in environmental and biological fields.

Electrospun nanofibers decorated with bio-sonochemically synthesized gold nanoparticles as an ultrasensitive probe in amalgam-based mercury (II) detection system

In this study, bio-ultrasound-assisted synthesized gold nanoparticles using Gracilaria canaliculata algae have been immobilized on a polymeric support and used as a glassy probe chemosensor for detection and rapid removal of Hg²⁺ ions. The function of the suggested chemosensor has been explained based on gold-amalgam formation and its catalytic role on the reaction of sodium borohydride and rhodamine B (RhB) with fluorescent and colorimetric sensing function. The catalyzed reduction of RhB by the gold amalgam led to a distinguished color change from red and yellow florescence to colorless by converting the amount of Hg²⁺ deposited on Au-NPs. The detection limit of the colorimetric and fluorescence assays for Hg²⁺ was 2.21 nM and 1.10 nM respectively. By exposing the mentioned colorless solution to air for at least 2 h, unexpectedly it was observed that the color and fluorescence of RhB were restored. Have the benefit of the above phenomenon a recyclable and portable glass-based sensor has been provided by immobilizing the Au-NPs and RB on the glass slide using electrospinning. Moreover, the introduced combinatorial membrane has facilitated the detection and removal of Hg²⁺ ions in various Hg (II)-contaminated real water samples with efficiency of up to 99%.

Simultaneous detection and determination of mercury (II) and lead (II) ions through the achievement of novel functional nucleic acid-based biosensors

The serious threats of mercury (Hg²⁺) and lead (Pb²⁺) ions for the public health makes it important to achieve the detection methods of the ions with high affinity and specificity. Metal ions usually coexist in some environment and foodstuff or clinical samples. Therefore, it is very necessary to develop a fast and simple method for simultaneous monitoring the amount of metal ions, especially when Hg²⁺ and Pb²⁺ coexist. DNAzyme-based biosensors and aptasensors have been highly regarded for this purpose as two main groups of the functional nucleic acid (FNA)-based biosensors. In this review, we summarize the recent achievements of functional nucleic acid-based biosensors for the simultaneous detection of Hg²⁺ and Pb²⁺ ions in two main optical and electrochemical groups. The tremendous interest in utilizing the various nanomaterials is also highlighted in the fabrication of the FNA-based biosensors. Finally, some results are presented based on the advantages and disadvantages of the studied FNA-based biosensors to compare their validation.

Equipment-Free Quantitative Aptamer-Based Colorimetric Assay Based on Target-Mediated Viscosity Change

In this paper, we describe an aptamer-based colorimetric assay (ABCA), which integrates enzyme-loaded microparticles for signal amplification with distance measurement for equipment-free quantitative readout. The distance measurement readout is on the basis of target-induced selective reduction in viscosity of reaction solution. Its utility is well demonstrated with inexpensive, sensitive, and selective detection of adenosine (model analyte) in buffer samples and real samples of human serum and urine with the naked eye. This ABCA method just requires operators to simply count the number of colored distance-relevant marked bars on the calibrated glass microsyringes (testing containers) to provide quantitative results. It thus holds great promise for wide applications particularly in limited-resource settings.

In situ growth of gold nanoparticles on Hg2+-binding M13 phages for mercury sensing

Mercury poses a serious threat to human health and the ecosystem. Its pollution is still prevalent in developing areas, which calls for the development of a simple on-site method for Hg²⁺ detection. Plasmonic nanosensors for mercury, especially those based on gold nanoparticles (AuNPs), have been increasingly developed due to the flourish of nanotechnology in the last decade. However, the limitation on either selectivity or stability hindered their practical applications. Herein, by taking advantage of the unique optical properties of AuNPs and the versatility of M13 phages, a novel Hg²⁺ sensing strategy is proposed. AuNPs grew in situ on the surface of Hg²⁺-binding M13 phages at room temperature and the resulting AuNP-phage networks were directly used for mercury sensing. Hg²⁺ was selectively captured by M13 phages indwelling in the networks and gathered around AuNPs, followed by the reduction into Hg(0) and deposition on the AuNP surfaces, wherein it resulted in a blue shift of the SPR band of AuNPs and an increase in the absorbance. An LOD of 8 × 10^-8 mol L^-1 was achieved based on the quantification of the absorption ratio of AuNPs at 525 and 650 nm. As the Hg²⁺ recognition was double guaranteed by the capture of Hg²⁺-binding phages as well as the unique affinity between mercury and gold, the sensing system showed a high selectivity and a superior interference tolerance capability, facilitating its practical applications in environmental water bodies without deterioration of the sensing performance.