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Rolls ET, Treves A. A theory of hippocampal function: New developments. Prog Neurobiol 2024; 238:102636. [PMID: 38834132 DOI: 10.1016/j.pneurobio.2024.102636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2024] [Revised: 04/15/2024] [Accepted: 05/30/2024] [Indexed: 06/06/2024]
Abstract
We develop further here the only quantitative theory of the storage of information in the hippocampal episodic memory system and its recall back to the neocortex. The theory is upgraded to account for a revolution in understanding of spatial representations in the primate, including human, hippocampus, that go beyond the place where the individual is located, to the location being viewed in a scene. This is fundamental to much primate episodic memory and navigation: functions supported in humans by pathways that build 'where' spatial view representations by feature combinations in a ventromedial visual cortical stream, separate from those for 'what' object and face information to the inferior temporal visual cortex, and for reward information from the orbitofrontal cortex. Key new computational developments include the capacity of the CA3 attractor network for storing whole charts of space; how the correlations inherent in self-organizing continuous spatial representations impact the storage capacity; how the CA3 network can combine continuous spatial and discrete object and reward representations; the roles of the rewards that reach the hippocampus in the later consolidation into long-term memory in part via cholinergic pathways from the orbitofrontal cortex; and new ways of analysing neocortical information storage using Potts networks.
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Affiliation(s)
- Edmund T Rolls
- Oxford Centre for Computational Neuroscience, Oxford, UK; Department of Computer Science, University of Warwick, Coventry CV4 7AL, UK.
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2
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Schmidig FJ, Ruch S, Henke K. Episodic long-term memory formation during slow-wave sleep. eLife 2024; 12:RP89601. [PMID: 38661727 PMCID: PMC11045222 DOI: 10.7554/elife.89601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024] Open
Abstract
We are unresponsive during slow-wave sleep but continue monitoring external events for survival. Our brain wakens us when danger is imminent. If events are non-threatening, our brain might store them for later consideration to improve decision-making. To test this hypothesis, we examined whether novel vocabulary consisting of simultaneously played pseudowords and translation words are encoded/stored during sleep, and which neural-electrical events facilitate encoding/storage. An algorithm for brain-state-dependent stimulation selectively targeted word pairs to slow-wave peaks or troughs. Retrieval tests were given 12 and 36 hr later. These tests required decisions regarding the semantic category of previously sleep-played pseudowords. The sleep-played vocabulary influenced awake decision-making 36 hr later, if targeted to troughs. The words' linguistic processing raised neural complexity. The words' semantic-associative encoding was supported by increased theta power during the ensuing peak. Fast-spindle power ramped up during a second peak likely aiding consolidation. Hence, new vocabulary played during slow-wave sleep was stored and influenced decision-making days later.
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Affiliation(s)
| | - Simon Ruch
- Institute of Psychology, University of BernBernSwitzerland
- Faculty of Psychology, UniDistance SuisseBrigSwitzerland
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3
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van der Molen T, Spaeth A, Chini M, Bartram J, Dendukuri A, Zhang Z, Bhaskaran-Nair K, Blauvelt LJ, Petzold LR, Hansma PK, Teodorescu M, Hierlemann A, Hengen KB, Hanganu-Opatz IL, Kosik KS, Sharf T. Protosequences in human cortical organoids model intrinsic states in the developing cortex. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.12.29.573646. [PMID: 38234832 PMCID: PMC10793448 DOI: 10.1101/2023.12.29.573646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2024]
Abstract
Neuronal firing sequences are thought to be the basic building blocks of neural coding and information broadcasting within the brain. However, when sequences emerge during neurodevelopment remains unknown. We demonstrate that structured firing sequences are present in spontaneous activity of human brain organoids and ex vivo neonatal brain slices from the murine somatosensory cortex. We observed a balance between temporally rigid and flexible firing patterns that are emergent phenomena in human brain organoids and early postnatal murine somatosensory cortex, but not in primary dissociated cortical cultures. Our findings suggest that temporal sequences do not arise in an experience-dependent manner, but are rather constrained by an innate preconfigured architecture established during neurogenesis. These findings highlight the potential for brain organoids to further explore how exogenous inputs can be used to refine neuronal circuits and enable new studies into the genetic mechanisms that govern assembly of functional circuitry during early human brain development.
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Affiliation(s)
- Tjitse van der Molen
- Neuroscience Research Institute, University of California Santa Barbara, Santa Barbara, CA 93106, USA
- Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, CA 93106, USA
| | - Alex Spaeth
- UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
- Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
| | - Mattia Chini
- Institute of Developmental Neurophysiology, Center for Molecular Neurobiology, Hamburg Center of Neuroscience, University Medical Center Hamburg-Eppendorf, 20251 Hamburg, Germany
| | - Julian Bartram
- Department of Biosystems Science and Engineering, ETH Zürich, Klingelbergstrasse 48, 4056 Basel, Switzerland
| | - Aditya Dendukuri
- Department of Computer Science, University of California Santa Barbara, Santa Barbara, CA 93106, USA
| | - Zongren Zhang
- Department of Physics, University of California Santa Barbara, Santa Barbara, CA 93106
| | - Kiran Bhaskaran-Nair
- Department of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA
| | - Lon J. Blauvelt
- UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
| | - Linda R. Petzold
- Department of Computer Science, University of California Santa Barbara, Santa Barbara, CA 93106, USA
| | - Paul K. Hansma
- Neuroscience Research Institute, University of California Santa Barbara, Santa Barbara, CA 93106, USA
- Department of Physics, University of California Santa Barbara, Santa Barbara, CA 93106
| | - Mircea Teodorescu
- UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
- Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
| | - Andreas Hierlemann
- Department of Biosystems Science and Engineering, ETH Zürich, Klingelbergstrasse 48, 4056 Basel, Switzerland
| | - Keith B. Hengen
- Department of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA
| | - Ileana L. Hanganu-Opatz
- Institute of Developmental Neurophysiology, Center for Molecular Neurobiology, Hamburg Center of Neuroscience, University Medical Center Hamburg-Eppendorf, 20251 Hamburg, Germany
| | - Kenneth S. Kosik
- Neuroscience Research Institute, University of California Santa Barbara, Santa Barbara, CA 93106, USA
- Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, CA 93106, USA
| | - Tal Sharf
- UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
- Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
- Institute for the Biology of Stem Cells, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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4
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Boerma T, Ter Haar S, Ganga R, Wijnen F, Blom E, Wierenga CJ. What risk factors for Developmental Language Disorder can tell us about the neurobiological mechanisms of language development. Neurosci Biobehav Rev 2023; 154:105398. [PMID: 37741516 DOI: 10.1016/j.neubiorev.2023.105398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Revised: 07/03/2023] [Accepted: 09/17/2023] [Indexed: 09/25/2023]
Abstract
Language is a complex multidimensional cognitive system that is connected to many neurocognitive capacities. The development of language is therefore strongly intertwined with the development of these capacities and their neurobiological substrates. Consequently, language problems, for example those of children with Developmental Language Disorder (DLD), are explained by a variety of etiological pathways and each of these pathways will be associated with specific risk factors. In this review, we attempt to link previously described factors that may interfere with language development to putative underlying neurobiological mechanisms of language development, hoping to uncover openings for future therapeutical approaches or interventions that can help children to optimally develop their language skills.
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Affiliation(s)
- Tessel Boerma
- Institute for Language Sciences, Department of Languages, Literature and Communication, Utrecht University, Utrecht, the Netherlands
| | - Sita Ter Haar
- Institute for Language Sciences, Department of Languages, Literature and Communication, Utrecht University, Utrecht, the Netherlands; Cognitive Neurobiology and Helmholtz Institute, Department of Psychology, Utrecht University/Translational Neuroscience, University Medical Center Utrecht, the Netherlands
| | - Rachida Ganga
- Institute for Language Sciences, Department of Languages, Literature and Communication, Utrecht University, Utrecht, the Netherlands
| | - Frank Wijnen
- Institute for Language Sciences, Department of Languages, Literature and Communication, Utrecht University, Utrecht, the Netherlands
| | - Elma Blom
- Department of Development and Education of youth in Diverse Societies (DEEDS), Utrecht University, Utrecht, the Netherlands; Department of Language and Culture, The Arctic University of Norway UiT, Tromsø, Norway.
| | - Corette J Wierenga
- Biology Department, Faculty of Science, Utrecht University, the Netherlands; Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, the Netherlands.
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5
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Liu J, Xia T, Chen D, Yao Z, Zhu M, Antony JW, Lee TMC, Hu X. Item-specific neural representations during human sleep support long-term memory. PLoS Biol 2023; 21:e3002399. [PMID: 37983253 PMCID: PMC10695382 DOI: 10.1371/journal.pbio.3002399] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 12/04/2023] [Accepted: 10/20/2023] [Indexed: 11/22/2023] Open
Abstract
Understanding how individual memories are reactivated during sleep is essential in theorizing memory consolidation. Here, we employed the targeted memory reactivation (TMR) paradigm to unobtrusively replaying auditory memory cues during human participants' slow-wave sleep (SWS). Using representational similarity analysis (RSA) on cue-elicited electroencephalogram (EEG), we found temporally segregated and functionally distinct item-specific neural representations: the early post-cue EEG activity (within 0 to 2,000 ms) contained comparable item-specific representations for memory cues and control cues, signifying effective processing of auditory cues. Critically, the later EEG activity (2,500 to 2,960 ms) showed greater item-specific representations for post-sleep remembered items than for forgotten and control cues, indicating memory reprocessing. Moreover, these later item-specific neural representations were supported by concurrently increased spindles, particularly for items that had not been tested prior to sleep. These findings elucidated how external memory cues triggered item-specific neural representations during SWS and how such representations were linked to successful long-term memory. These results will benefit future research aiming to perturb specific memory episodes during sleep.
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Affiliation(s)
- Jing Liu
- Department of Applied Social Sciences, The Hong Kong Polytechnic University, Hong Kong, People’s Republic of China
- The State Key Laboratory of Brain and Cognitive Sciences, The University of Hong Kong, Hong Kong, People’s Republic of China
| | - Tao Xia
- The State Key Laboratory of Brain and Cognitive Sciences, The University of Hong Kong, Hong Kong, People’s Republic of China
- Department of Psychology, The University of Hong Kong, Hong Kong, People’s Republic of China
| | - Danni Chen
- The State Key Laboratory of Brain and Cognitive Sciences, The University of Hong Kong, Hong Kong, People’s Republic of China
- Department of Psychology, The University of Hong Kong, Hong Kong, People’s Republic of China
| | - Ziqing Yao
- The State Key Laboratory of Brain and Cognitive Sciences, The University of Hong Kong, Hong Kong, People’s Republic of China
- Department of Psychology, The University of Hong Kong, Hong Kong, People’s Republic of China
| | - Minrui Zhu
- The State Key Laboratory of Brain and Cognitive Sciences, The University of Hong Kong, Hong Kong, People’s Republic of China
- Department of Psychology, The University of Hong Kong, Hong Kong, People’s Republic of China
| | - James W. Antony
- Department of Psychology & Child Development, California Polytechnic State University, San Luis Obispo, California, United States of America
| | - Tatia M. C. Lee
- The State Key Laboratory of Brain and Cognitive Sciences, The University of Hong Kong, Hong Kong, People’s Republic of China
- Department of Psychology, The University of Hong Kong, Hong Kong, People’s Republic of China
- Laboratory of Neuropsychology and Human Neuroscience, Department of Psychology, The University of Hong Kong, Hong Kong, People’s Republic of China
| | - Xiaoqing Hu
- The State Key Laboratory of Brain and Cognitive Sciences, The University of Hong Kong, Hong Kong, People’s Republic of China
- Department of Psychology, The University of Hong Kong, Hong Kong, People’s Republic of China
- HKU-Shenzhen Institute of Research and Innovation, Shenzhen, People’s Republic of China
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Yao D, Li R, Hao J, Huang H, Wang X, Ran L, Fang Y, He Y, Wang W, Liu X, Wang M. Melatonin alleviates depression-like behaviors and cognitive dysfunction in mice by regulating the circadian rhythm of AQP4 polarization. Transl Psychiatry 2023; 13:310. [PMID: 37802998 PMCID: PMC10558463 DOI: 10.1038/s41398-023-02614-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 09/17/2023] [Accepted: 09/25/2023] [Indexed: 10/08/2023] Open
Abstract
Depression is a common chronic psychiatric illness, which is resistant to medical treatments. While melatonin may alleviate certain depression symptoms, evidence for its efficacy against core symptoms is lacking. Here, we tested a mechanism whereby melatonin rescues the behavioral outcomes of the chronic unpredictable mild stress (CUMS) mouse model of depression. CUMS mice showed depressive behaviors to tail suspension, open field behavior, and sucrose preference test, and cognitive dysfunction in the Morris water maze. Impairments in these measures were relieved by melatonin treatment. Moreover, CUMS mice had impaired glymphatic function across the sleep-wake cycle due to the astrocytic loss and disturbance of circadian regulation of the polarized expression of aquaporin-4 (AQP4) water channels in perivascular astrocytes. EEG results in CUMS mice showed a reduced total sleep time and non-rapid eye movement (NREM) sleep, due to sleep fragmentation in the light phase. CUMS mice lost the normal rhythmic expressions of circadian proteins Per2, Cry2, Bmal1, Clock, and Per1. However, the melatonin treatment restored glymphatic system function and the polarization of AQP4, while improving sleep structure, and rectifying the abnormal expression of Per2, Bmal1, Clock, and Per1 in CUMS mice. Interestingly, Per2 expression correlated negatively with the polarization of AQP4. Further studies demonstrated that Per2 directed the location of AQP4 expression via interactions with the α-dystrobrevin (Dtna) subunit of AQP4 in primary cultured astrocytes. In conclusion, we report a new mechanism whereby melatonin improves depression outcomes by regulating the expression of the circadian protein Per2, maintaining the circadian rhythm of astrocytic AQP4 polarization, and restoring glymphatic function.
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Affiliation(s)
- Di Yao
- Department of Neurology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China
| | - Rong Li
- Department of Neurology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China
- Department of Pediatrics, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China
| | - Jiahuan Hao
- Department of Neurology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China
| | - Hongqing Huang
- Department of Neurology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China
| | - Xubiao Wang
- Department of Neurology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China
| | - Lusen Ran
- Department of Neurology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China
| | - Yuanyuan Fang
- Department of Neurology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China
| | - Yuqin He
- Department of Neurology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China
| | - Wei Wang
- Department of Neurology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China
- Hubei Key Laboratory of Neural Injury and Functional Reconstruction, Huazhong University of Science and Technology, Wuhan, 430030, China
- Key Laboratory of Neurological Diseases of the Chinese Ministry of Education, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China
| | - Xinghua Liu
- Trauma Centre/ Department of Emergency and Trauma Surgery, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China.
| | - Minghuan Wang
- Department of Neurology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China.
- Hubei Key Laboratory of Neural Injury and Functional Reconstruction, Huazhong University of Science and Technology, Wuhan, 430030, China.
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Feliciano-Ramos PA, Galazo M, Penagos H, Wilson M. Hippocampal memory reactivation during sleep is correlated with specific cortical states of the retrosplenial and prefrontal cortices. Learn Mem 2023; 30:221-236. [PMID: 37758288 PMCID: PMC10547389 DOI: 10.1101/lm.053834.123] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Accepted: 08/25/2023] [Indexed: 10/03/2023]
Abstract
Episodic memories are thought to be stabilized through the coordination of cortico-hippocampal activity during sleep. However, the timing and mechanism of this coordination remain unknown. To investigate this, we studied the relationship between hippocampal reactivation and slow-wave sleep up and down states of the retrosplenial cortex (RTC) and prefrontal cortex (PFC). We found that hippocampal reactivations are strongly correlated with specific cortical states. Reactivation occurred during sustained cortical Up states or during the transition from up to down state. Interestingly, the most prevalent interaction with memory reactivation in the hippocampus occurred during sustained up states of the PFC and RTC, while hippocampal reactivation and cortical up-to-down state transition in the RTC showed the strongest coordination. Reactivation usually occurred within 150-200 msec of a cortical Up state onset, indicating that a buildup of excitation during cortical Up state activity influences the probability of memory reactivation in CA1. Conversely, CA1 reactivation occurred 30-50 msec before the onset of a cortical down state, suggesting that memory reactivation affects down state initiation in the RTC and PFC, but the effect in the RTC was more robust. Our findings provide evidence that supports and highlights the complexity of bidirectional communication between cortical regions and the hippocampus during sleep.
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Affiliation(s)
- Pedro A Feliciano-Ramos
- Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Maria Galazo
- Neuroscience Program, Tulane Brain Institute, Tulane University, New Orleans, Louisana 70118, USA
- Department of Cell and Molecular Biology, Tulane Brain Institute, Tulane University, New Orleans, Louisana 70118, USA
| | - Hector Penagos
- Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
- Center for Brains, Minds, and Machines, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Matthew Wilson
- Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
- Center for Brains, Minds, and Machines, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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Rexrode L, Tennin M, Babu J, Young C, Bollavarapu R, Lawson LA, Valeri J, Pantazopoulos H, Gisabella B. Regulation of dendritic spines in the amygdala following sleep deprivation. FRONTIERS IN SLEEP 2023; 2:1145203. [PMID: 37928499 PMCID: PMC10624159 DOI: 10.3389/frsle.2023.1145203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/07/2023]
Abstract
The amygdala is a hub of emotional circuits involved in the regulation of cognitive and emotional behaviors and its critically involved in emotional reactivity, stress regulation, and fear memory. Growing evidence suggests that the amygdala plays a key role in the consolidation of emotional memories during sleep. Neuroimaging studies demonstrated that the amygdala is selectively and highly activated during rapid eye movement sleep (REM) and sleep deprivation induces emotional instability and dysregulation of the emotional learning process. Regulation of dendritic spines during sleep represents a morphological correlate of memory consolidation. Several studies indicate that dendritic spines are remodeled during sleep, with evidence for broad synaptic downscaling and selective synaptic upscaling in several cortical areas and the hippocampus. Currently, there is a lack of information regarding the regulation of dendritic spines in the amygdala during sleep. In the present work, we investigated the effect of 5 h of sleep deprivation on dendritic spines in the mouse amygdala. Our data demonstrate that sleep deprivation results in differential dendritic spine changes depending on both the amygdala subregions and the morphological subtypes of dendritic spines. We observed decreased density of mushroom spines in the basolateral amygdala of sleep deprived mice, together with increased neck length and decreased surface area and volume. In contrast, we observed greater densities of stubby spines in sleep deprived mice in the central amygdala, indicating that downscaling selectively occurs in this spine type. Greater neck diameters for thin spines in the lateral and basolateral nuclei of sleep deprived mice, and decreases in surface area and volume for mushroom spines in the basolateral amygdala compared to increases in the cental amygdala provide further support for spine type-selective synaptic downscaling in these areas during sleep. Our findings suggest that sleep promotes synaptic upscaling of mushroom spines in the basolateral amygdala, and downscaling of selective spine types in the lateral and central amygdala. In addition, we observed decreased density of phosphorylated cofilin immunoreactive and growth hormone immunoreactive cells in the amygdala of sleep deprived mice, providing further support for upscaling of dendritic spines during sleep. Overall, our findings point to region-and spine type-specific changes in dendritic spines during sleep in the amygdala, which may contribute to consolidation of emotional memories during sleep.
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Affiliation(s)
- Lindsay Rexrode
- Department of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, MS, United States
| | - Matthew Tennin
- Department of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, MS, United States
| | - Jobin Babu
- Department of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, MS, United States
- Program in Neuroscience, University of Mississippi Medical Center, Jackson, MS, United States
| | - Caleb Young
- Department of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, MS, United States
| | - Ratna Bollavarapu
- Department of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, MS, United States
| | - Lamiorkor Ameley Lawson
- Department of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, MS, United States
| | - Jake Valeri
- Department of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, MS, United States
- Program in Neuroscience, University of Mississippi Medical Center, Jackson, MS, United States
| | - Harry Pantazopoulos
- Department of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, MS, United States
- Program in Neuroscience, University of Mississippi Medical Center, Jackson, MS, United States
| | - Barbara Gisabella
- Department of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, MS, United States
- Program in Neuroscience, University of Mississippi Medical Center, Jackson, MS, United States
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Berthon B, Bergel A, Matei M, Tanter M. Decoding behavior from global cerebrovascular activity using neural networks. Sci Rep 2023; 13:3541. [PMID: 36864293 PMCID: PMC9981746 DOI: 10.1038/s41598-023-30661-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Accepted: 02/27/2023] [Indexed: 03/04/2023] Open
Abstract
Functional Ultrasound (fUS) provides spatial and temporal frames of the vascular activity in the brain with high resolution and sensitivity in behaving animals. The large amount of resulting data is underused at present due to the lack of appropriate tools to visualize and interpret such signals. Here we show that neural networks can be trained to leverage the richness of information available in fUS datasets to reliably determine behavior, even from a single fUS 2D image after appropriate training. We illustrate the potential of this method with two examples: determining if a rat is moving or static and decoding the animal's sleep/wake state in a neutral environment. We further demonstrate that our method can be transferred to new recordings, possibly in other animals, without additional training, thereby paving the way for real-time decoding of brain activity based on fUS data. Finally, the learned weights of the network in the latent space were analyzed to extract the relative importance of input data to classify behavior, making this a powerful tool for neuroscientific research.
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Affiliation(s)
- Béatrice Berthon
- Physics for Medicine Institute, INSERM U1273, CNRS UMR 8063, ESPCI Paris, PSL Research University, Paris, France.
| | - Antoine Bergel
- Physics for Medicine Institute, INSERM U1273, CNRS UMR 8063, ESPCI Paris, PSL Research University, Paris, France
| | - Marta Matei
- Physics for Medicine Institute, INSERM U1273, CNRS UMR 8063, ESPCI Paris, PSL Research University, Paris, France
| | - Mickaël Tanter
- Physics for Medicine Institute, INSERM U1273, CNRS UMR 8063, ESPCI Paris, PSL Research University, Paris, France
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10
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Chen ZS, Wilson MA. How our understanding of memory replay evolves. J Neurophysiol 2023; 129:552-580. [PMID: 36752404 PMCID: PMC9988534 DOI: 10.1152/jn.00454.2022] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Revised: 01/20/2023] [Accepted: 01/20/2023] [Indexed: 02/09/2023] Open
Abstract
Memory reactivations and replay, widely reported in the hippocampus and cortex across species, have been implicated in memory consolidation, planning, and spatial and skill learning. Technological advances in electrophysiology, calcium imaging, and human neuroimaging techniques have enabled neuroscientists to measure large-scale neural activity with increasing spatiotemporal resolution and have provided opportunities for developing robust analytic methods to identify memory replay. In this article, we first review a large body of historically important and representative memory replay studies from the animal and human literature. We then discuss our current understanding of memory replay functions in learning, planning, and memory consolidation and further discuss the progress in computational modeling that has contributed to these improvements. Next, we review past and present analytic methods for replay analyses and discuss their limitations and challenges. Finally, looking ahead, we discuss some promising analytic methods for detecting nonstereotypical, behaviorally nondecodable structures from large-scale neural recordings. We argue that seamless integration of multisite recordings, real-time replay decoding, and closed-loop manipulation experiments will be essential for delineating the role of memory replay in a wide range of cognitive and motor functions.
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Affiliation(s)
- Zhe Sage Chen
- Department of Psychiatry, New York University Grossman School of Medicine, New York, New York, United States
- Department of Neuroscience and Physiology, New York University Grossman School of Medicine, New York, New York, United States
- Neuroscience Institute, New York University Grossman School of Medicine, New York, New York, United States
- Department of Biomedical Engineering, New York University Tandon School of Engineering, Brooklyn, New York, United States
| | - Matthew A Wilson
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States
- Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States
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11
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Freezing revisited: coordinated autonomic and central optimization of threat coping. Nat Rev Neurosci 2022; 23:568-580. [PMID: 35760906 DOI: 10.1038/s41583-022-00608-2] [Citation(s) in RCA: 39] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/20/2022] [Indexed: 12/16/2022]
Abstract
Animals have sophisticated mechanisms for coping with danger. Freezing is a unique state that, upon threat detection, allows evidence to be gathered, response possibilities to be previsioned and preparations to be made for worst-case fight or flight. We propose that - rather than reflecting a passive fear state - the particular somatic and cognitive characteristics of freezing help to conceal overt responses, while optimizing sensory processing and action preparation. Critical for these functions are the neurotransmitters noradrenaline and acetylcholine, which modulate neural information processing and also control the sympathetic and parasympathetic branches of the autonomic nervous system. However, the interactions between autonomic systems and the brain during freezing, and the way in which they jointly coordinate responses, remain incompletely explored. We review the joint actions of these systems and offer a novel computational framework to describe their temporally harmonized integration. This reconceptualization of freezing has implications for its role in decision-making under threat and for psychopathology.
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12
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Cao L, Varga V, Chen ZS. Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials. CELL REPORTS METHODS 2021; 1:100101. [PMID: 34888543 PMCID: PMC8654278 DOI: 10.1016/j.crmeth.2021.100101] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Revised: 07/27/2021] [Accepted: 09/28/2021] [Indexed: 12/23/2022]
Abstract
Spatiotemporal patterns of large-scale spiking and field potentials of the rodent hippocampus encode spatial representations during maze runs, immobility, and sleep. Here, we show that multisite hippocampal field potential amplitude at ultra-high-frequency band (FPAuhf), a generalized form of multiunit activity, provides not only a fast and reliable reconstruction of the rodent's position when awake, but also a readout of replay content during sharp-wave ripples. This FPAuhf feature may serve as a robust real-time decoding strategy from large-scale recordings in closed-loop experiments. Furthermore, we develop unsupervised learning approaches to extract low-dimensional spatiotemporal FPAuhf features during run and ripple periods and to infer latent dynamical structures from lower-rank FPAuhf features. We also develop an optical flow-based method to identify propagating spatiotemporal LFP patterns from multisite array recordings, which can be used as a decoding application. Finally, we develop a prospective decoding strategy to predict an animal's future decision in goal-directed navigation.
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Affiliation(s)
- Liang Cao
- The Neuroscience Institute, New York University Grossman School of Medicine, New York, NY 10016, USA
- Department of Physics, East China Normal University, Shanghai 200241, China
| | - Viktor Varga
- The Neuroscience Institute, New York University Grossman School of Medicine, New York, NY 10016, USA
- Institute of Experimental Medicine, 43 Szigony Street, 1083 Budapest, Hungary
| | - Zhe S. Chen
- The Neuroscience Institute, New York University Grossman School of Medicine, New York, NY 10016, USA
- Department of Psychiatry, Department of Neuroscience and Physiology, New York University Grossman School of Medicine, New York, NY 10016, USA
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13
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Goto A, Bota A, Miya K, Wang J, Tsukamoto S, Jiang X, Hirai D, Murayama M, Matsuda T, McHugh TJ, Nagai T, Hayashi Y. Stepwise synaptic plasticity events drive the early phase of memory consolidation. Science 2021; 374:857-863. [PMID: 34762472 DOI: 10.1126/science.abj9195] [Citation(s) in RCA: 53] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
[Figure: see text].
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Affiliation(s)
- Akihiro Goto
- Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan.,RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan
| | - Ayaka Bota
- Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan.,RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan.,Graduate School of Science and Engineering, Saitama University, Saitama 338-8570, Japan
| | - Ken Miya
- RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan.,Department of Molecular Neurobiology, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki 305-8575, Japan.,Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-8575, Japan
| | - Jingbo Wang
- Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan
| | - Suzune Tsukamoto
- Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan
| | - Xinzhi Jiang
- Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan
| | - Daichi Hirai
- RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan
| | - Masanori Murayama
- RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan.,RIKEN Center for Brain Science, Wako, Saitama 351-0198, Japan
| | - Tomoki Matsuda
- SANKEN (The Institute of Scientific and Industrial Research), Osaka University, Mihogaoka 8-1, Ibaraki, Osaka 567-0047, Japan
| | - Thomas J McHugh
- RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan.,RIKEN Center for Brain Science, Wako, Saitama 351-0198, Japan
| | - Takeharu Nagai
- SANKEN (The Institute of Scientific and Industrial Research), Osaka University, Mihogaoka 8-1, Ibaraki, Osaka 567-0047, Japan
| | - Yasunori Hayashi
- Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan.,RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan.,Brain and Body System Science Institute, Saitama University, Saitama 338-8570, Japan
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14
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Stability of ripple events during task engagement in human hippocampus. Cell Rep 2021; 35:109304. [PMID: 34192546 PMCID: PMC8288441 DOI: 10.1016/j.celrep.2021.109304] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Revised: 04/02/2021] [Accepted: 06/03/2021] [Indexed: 11/23/2022] Open
Abstract
High-frequency activity bursts in the hippocampus, known as ripples, are thought to support memory consolidation during “offline” states, such as sleep. Recently, human hippocampal ripples have been observed during “online” episodic memory tasks. It remains unclear whether similar ripple activity occurs during other cognitive states, including different types of episodic memory. However, identifying genuine ripple events in the human hippocampus is challenging. To address these questions, spectro-temporal ripple identification was applied to human hippocampal recordings across a variety of cognitive tasks. Overall, ripple attributes were stable across tasks of visual perception and associative memory, with mean rates lower than offline states of rest and sleep. In contrast, while more complex visual attention tasks did not modulate ripple attributes, rates were enhanced for more complex autobiographical memory conditions. Therefore, hippocampal ripples reliably occur across cognitive states but are specifically enhanced during offline states and complex memory processes, consistent with a role in consolidation. Hippocampal ripples are high-frequency activity bursts proposed to support “offline” memory consolidation. Chen et al. identify that human hippocampal ripples occur with stable properties across tasks of visual perception and associative memory but are enhanced for autobiographical memory retrieval and non-REM sleep, supporting their “online” role in establishing and strengthening memory traces.
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15
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Hablitz LM, Plá V, Giannetto M, Vinitsky HS, Stæger FF, Metcalfe T, Nguyen R, Benrais A, Nedergaard M. Circadian control of brain glymphatic and lymphatic fluid flow. Nat Commun 2020; 11:4411. [PMID: 32879313 PMCID: PMC7468152 DOI: 10.1038/s41467-020-18115-2] [Citation(s) in RCA: 277] [Impact Index Per Article: 69.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2019] [Accepted: 07/24/2020] [Indexed: 12/20/2022] Open
Abstract
The glymphatic system is a network of perivascular spaces that promotes movement of cerebrospinal fluid (CSF) into the brain and clearance of metabolic waste. This fluid transport system is supported by the water channel aquaporin-4 (AQP4) localized to vascular endfeet of astrocytes. The glymphatic system is more effective during sleep, but whether sleep timing promotes glymphatic function remains unknown. We here show glymphatic influx and clearance exhibit endogenous, circadian rhythms peaking during the mid-rest phase of mice. Drainage of CSF from the cisterna magna to the lymph nodes exhibits daily variation opposite to glymphatic influx, suggesting distribution of CSF throughout the animal depends on time-of-day. The perivascular polarization of AQP4 is highest during the rest phase and loss of AQP4 eliminates the day-night difference in both glymphatic influx and drainage to the lymph nodes. We conclude that CSF distribution is under circadian control and that AQP4 supports this rhythm.
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Affiliation(s)
- Lauren M Hablitz
- Center for Translational Neuromedicine, University of Rochester Medical Center, Rochester, NY, 14642, USA.
| | - Virginia Plá
- Center for Translational Neuromedicine, University of Rochester Medical Center, Rochester, NY, 14642, USA
| | - Michael Giannetto
- Center for Translational Neuromedicine, University of Rochester Medical Center, Rochester, NY, 14642, USA
| | - Hanna S Vinitsky
- Center for Translational Neuromedicine, University of Rochester Medical Center, Rochester, NY, 14642, USA
| | - Frederik Filip Stæger
- Center for Basic and Translational Neuroscience, Faculty of Health and Medical Sciences, University of Copenhagen, 2200, Copenhagen, Denmark
| | - Tanner Metcalfe
- Center for Translational Neuromedicine, University of Rochester Medical Center, Rochester, NY, 14642, USA
| | - Rebecca Nguyen
- Center for Translational Neuromedicine, University of Rochester Medical Center, Rochester, NY, 14642, USA
| | - Abdellatif Benrais
- Center for Translational Neuromedicine, University of Rochester Medical Center, Rochester, NY, 14642, USA
| | - Maiken Nedergaard
- Center for Translational Neuromedicine, University of Rochester Medical Center, Rochester, NY, 14642, USA. .,Center for Basic and Translational Neuroscience, Faculty of Health and Medical Sciences, University of Copenhagen, 2200, Copenhagen, Denmark.
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16
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Tu M, Zhao R, Adler A, Gan WB, Chen ZS. Efficient Position Decoding Methods Based on Fluorescence Calcium Imaging in the Mouse Hippocampus. Neural Comput 2020; 32:1144-1167. [PMID: 32343646 PMCID: PMC8011981 DOI: 10.1162/neco_a_01281] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Large-scale fluorescence calcium imaging methods have become widely adopted for studies of long-term hippocampal and cortical neuronal dynamics. Pyramidal neurons of the rodent hippocampus show spatial tuning in freely foraging or head-fixed navigation tasks. Development of efficient neural decoding methods for reconstructing the animal's position in real or virtual environments can provide a fast readout of spatial representations in closed-loop neuroscience experiments. Here, we develop an efficient strategy to extract features from fluorescence calcium imaging traces and further decode the animal's position. We validate our spike inference-free decoding methods in multiple in vivo calcium imaging recordings of the mouse hippocampus based on both supervised and unsupervised decoding analyses. We systematically investigate the decoding performance of our proposed methods with respect to the number of neurons, imaging frame rate, and signal-to-noise ratio. Our proposed supervised decoding analysis is ultrafast and robust, and thereby appealing for real-time position decoding applications based on calcium imaging.
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Affiliation(s)
- Mengyu Tu
- Department of Psychiatry, New York University School of Medicine, New York, NY 10016, U.S.A., and Nanyang Technological University, 639798, Singapore
| | - Ruohe Zhao
- Skirball Institute, Department of Neuroscience and Physiology and Department of Anesthesiology, New York University School of Medicine, New York, NY 10016, U.S.A., and Key Laboratory of Chemical Genomics, Peking University, Shenzhen Graduate School, Shenzhen 518055, China
| | - Avital Adler
- Skirball Institute, Department of Neuroscience and Physiology and Department of Anesthesiology, New York University School of Medicine, New York, NY 10016, U.S.A.
| | - Wen-Biao Gan
- Skirball Institute, Department of Neuroscience and Physiology, Department of Anesthesiology, and Neuroscience Institute, New York University School of Medicine, New York, NY 10016, U.S.A.
| | - Zhe S Chen
- Department of Psychiatry and Neuroscience Institute, New York University School of Medicine, New York, NY 10016, U.S.A.
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17
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Dissel S. Drosophila as a Model to Study the Relationship Between Sleep, Plasticity, and Memory. Front Physiol 2020; 11:533. [PMID: 32547415 PMCID: PMC7270326 DOI: 10.3389/fphys.2020.00533] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Accepted: 04/30/2020] [Indexed: 12/28/2022] Open
Abstract
Humans spend nearly a third of their life sleeping, yet, despite decades of research the function of sleep still remains a mystery. Sleep has been linked with various biological systems and functions, including metabolism, immunity, the cardiovascular system, and cognitive functions. Importantly, sleep appears to be present throughout the animal kingdom suggesting that it must provide an evolutionary advantage. Among the many possible functions of sleep, the relationship between sleep, and cognition has received a lot of support. We have all experienced the negative cognitive effects associated with a night of sleep deprivation. These can include increased emotional reactivity, poor judgment, deficit in attention, impairment in learning and memory, and obviously increase in daytime sleepiness. Furthermore, many neurological diseases like Alzheimer’s disease often have a sleep disorder component. In some cases, the sleep disorder can exacerbate the progression of the neurological disease. Thus, it is clear that sleep plays an important role for many brain functions. In particular, sleep has been shown to play a positive role in the consolidation of long-term memory while sleep deprivation negatively impacts learning and memory. Importantly, sleep is a behavior that is adapted to an individual’s need and influenced by many external and internal stimuli. In addition to being an adaptive behavior, sleep can also modulate plasticity in the brain at the level of synaptic connections between neurons and neuronal plasticity influences sleep. Understanding how sleep is modulated by internal and external stimuli and how sleep can modulate memory and plasticity is a key question in neuroscience. In order to address this question, several animal models have been developed. Among them, the fruit fly Drosophila melanogaster with its unparalleled genetics has proved to be extremely valuable. In addition to sleep, Drosophila has been shown to be an excellent model to study many complex behaviors, including learning, and memory. This review describes our current knowledge of the relationship between sleep, plasticity, and memory using the fly model.
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Affiliation(s)
- Stephane Dissel
- Department of Molecular Biology and Biochemistry, School of Biological and Chemical Sciences, University of Missouri-Kansas City, Kansas City, MO, United States
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18
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Tukker JJ, Beed P, Schmitz D, Larkum ME, Sachdev RNS. Up and Down States and Memory Consolidation Across Somatosensory, Entorhinal, and Hippocampal Cortices. Front Syst Neurosci 2020; 14:22. [PMID: 32457582 PMCID: PMC7227438 DOI: 10.3389/fnsys.2020.00022] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Accepted: 04/03/2020] [Indexed: 01/01/2023] Open
Abstract
In the course of a day, brain states fluctuate, from conscious awake information-acquiring states to sleep states, during which previously acquired information is further processed and stored as memories. One hypothesis is that memories are consolidated and stored during "offline" states such as sleep, a process thought to involve transfer of information from the hippocampus to other cortical areas. Up and Down states (UDS), patterns of activity that occur under anesthesia and sleep states, are likely to play a role in this process, although the nature of this role remains unclear. Here we review what is currently known about these mechanisms in three anatomically distinct but interconnected cortical areas: somatosensory cortex, entorhinal cortex, and the hippocampus. In doing so, we consider the role of this activity in the coordination of "replay" during sleep states, particularly during hippocampal sharp-wave ripples. We conclude that understanding the generation and propagation of UDS may provide key insights into the cortico-hippocampal dialogue linking archi- and neocortical areas during memory formation.
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Affiliation(s)
- John J Tukker
- Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin, Germany.,Neuroscience Research Center, Berlin, Germany.,German Center for Neurodegenerative Diseases (DZNE), Berlin, Germany
| | - Prateep Beed
- Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin, Germany.,Neuroscience Research Center, Berlin, Germany.,Berlin Institute of Health, Berlin, Germany
| | - Dietmar Schmitz
- Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin, Germany.,Neuroscience Research Center, Berlin, Germany.,German Center for Neurodegenerative Diseases (DZNE), Berlin, Germany.,Berlin Institute of Health, Berlin, Germany.,Cluster of Excellence NeuroCure, Berlin, Germany.,Einstein Center for Neurosciences Berlin, Berlin, Germany
| | - Matthew E Larkum
- Cluster of Excellence NeuroCure, Berlin, Germany.,Einstein Center for Neurosciences Berlin, Berlin, Germany.,Institut für Biologie, Humboldt Universität, Berlin, Germany
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19
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Lu HC, Pollack H, Lefante JJ, Mills AA, Tian D. Altered sleep architecture, rapid eye movement sleep, and neural oscillation in a mouse model of human chromosome 16p11.2 microdeletion. Sleep 2020; 42:5239591. [PMID: 30541142 DOI: 10.1093/sleep/zsy253] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2018] [Revised: 11/05/2018] [Accepted: 12/10/2018] [Indexed: 01/08/2023] Open
Abstract
Sleep abnormalities are common among children with neurodevelopmental disorders. The human chr16p11.2 microdeletion is associated with a range of neurological and neurobehavioral abnormalities. Previous studies of a mouse model of human chr16p11.2 microdeletion (chr16p11.2df/+) have demonstrated pathophysiological changes at the synapses in the hippocampus and striatum; however, the impact of this genetic abnormality on system level brain functions, such as sleep and neural oscillation, has not been adequately investigated. Here, we show that chr16p11.2df/+ mice have altered sleep architecture, with increased wake time and reduced time in rapid eye movement (REM) and non-REM (NREM) sleep. Importantly, several measurements of REM sleep are significantly changed in deletion mice. The REM bout number and the bout number ratio of REM to NREM are decreased in mutant mice, suggesting a deficit in REM-NREM transition. The average REM bout duration is shorter in mutant mice, indicating a defect in REM maintenance. In addition, whole-cell patch clamp recording of the ventrolateral periaqueductal gray (vlPAG)-projecting gamma-aminobutyric acid (GABA)ergic neurons in the lateral paragigantocellular nucleus of ventral medulla of mutant mice reveal that these neurons, which are important for NREM-REM transition and REM maintenance, have hyperpolarized resting membrane potential and increased membrane resistance. These changes in intrinsic membrane properties suggest that these projection-specific neurons of mutant mice are less excitable, and thereby may play a role in deficient NREM-REM transition and REM maintenance. Furthermore, mutant mice exhibit changes in neural oscillation involving multiple frequency classes in several vigilance states. The most significant alterations occur in the theta frequency during wake and REM sleep.
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Affiliation(s)
- Hung-Chi Lu
- Department of Pathology and Laboratory Medicine, Children's Hospital Los Angeles, University of Southern California, Los Angeles, CA.,Developmental Neuroscience Program, The Saban Research Institute, Children's Hospital Los Angeles, University of Southern California, Los Angeles, CA.,Neuroscience Graduate Program, University of Southern California, Los Angeles, CA
| | - Harvey Pollack
- Department of Radiology, Children's Hospital Los Angeles, University of Southern California, Los Angeles, CA
| | - John J Lefante
- Department of Global Biostatistics and Data Science, Tulane University School of Public Health and Tropical Medicine, New Orleans, LA
| | - Alea A Mills
- Cold Spring Harbor Laboratory, Center for Cancer Research, Cold Spring Harbor, NY
| | - Di Tian
- Department of Pathology and Laboratory Medicine, Children's Hospital Los Angeles, University of Southern California, Los Angeles, CA.,Developmental Neuroscience Program, The Saban Research Institute, Children's Hospital Los Angeles, University of Southern California, Los Angeles, CA.,Neuroscience Graduate Program, University of Southern California, Los Angeles, CA.,Department of Pathology and Laboratory Medicine, Tulane University School of Medicine, New Orleans, LA
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20
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Ahrens AM, Ahmed OJ. Neural circuits linking sleep and addiction: Animal models to understand why select individuals are more vulnerable to substance use disorders after sleep deprivation. Neurosci Biobehav Rev 2019; 108:435-444. [PMID: 31756346 DOI: 10.1016/j.neubiorev.2019.11.007] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2019] [Revised: 10/26/2019] [Accepted: 11/12/2019] [Indexed: 12/12/2022]
Abstract
Individuals differ widely in their drug-craving behaviors. One reason for these differences involves sleep. Sleep disturbances lead to an increased risk of substance use disorders and relapse in only some individuals. While animal studies have examined the impact of sleep on reward circuitry, few have addressed the role of individual differences in the effects of altered sleep. There does, however, exist a rodent model of individual differences in reward-seeking behavior: the sign/goal-tracker model of Pavlovian conditioned approach. In this model, only some rats show the key behavioral traits associated with addiction, including impulsivity and poor attentional control, making this an ideal model system to examine individually distinct sleep-reward interactions. Here, we describe how the limbic neural circuits responsible for individual differences in incentive motivation overlap with those involved in sleep-wake regulation, and how this model can elucidate the common underlying mechanisms. Consideration of individual differences in preclinical models would improve our understanding of how sleep interacts with motivational systems, and why sleep deprivation contributes to addiction in only select individuals.
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Affiliation(s)
| | - Omar J Ahmed
- Dept. of Psychology, United States; Neuroscience Graduate Program, United States; Michigan Center for Integrative Research in Critical Care, United States; Kresge Hearing Research Institute, United States; Dept. of Biomedical Engineering, University of Michigan, Ann Arbor, MI, 48109, United States.
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21
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The intrinsic attractor manifold and population dynamics of a canonical cognitive circuit across waking and sleep. Nat Neurosci 2019; 22:1512-1520. [DOI: 10.1038/s41593-019-0460-x] [Citation(s) in RCA: 111] [Impact Index Per Article: 22.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2018] [Accepted: 07/01/2019] [Indexed: 11/09/2022]
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22
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Watanabe K, Haga T, Tatsuno M, Euston DR, Fukai T. Unsupervised Detection of Cell-Assembly Sequences by Similarity-Based Clustering. Front Neuroinform 2019; 13:39. [PMID: 31214005 PMCID: PMC6554434 DOI: 10.3389/fninf.2019.00039] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Accepted: 05/15/2019] [Indexed: 12/30/2022] Open
Abstract
Neurons which fire in a fixed temporal pattern (i.e., "cell assemblies") are hypothesized to be a fundamental unit of neural information processing. Several methods are available for the detection of cell assemblies without a time structure. However, the systematic detection of cell assemblies with time structure has been challenging, especially in large datasets, due to the lack of efficient methods for handling the time structure. Here, we show a method to detect a variety of cell-assembly activity patterns, recurring in noisy neural population activities at multiple timescales. The key innovation is the use of a computer science method to comparing strings ("edit similarity"), to group spikes into assemblies. We validated the method using artificial data and experimental data, which were previously recorded from the hippocampus of male Long-Evans rats and the prefrontal cortex of male Brown Norway/Fisher hybrid rats. From the hippocampus, we could simultaneously extract place-cell sequences occurring on different timescales during navigation and awake replay. From the prefrontal cortex, we could discover multiple spike sequences of neurons encoding different segments of a goal-directed task. Unlike conventional event-driven statistical approaches, our method detects cell assemblies without creating event-locked averages. Thus, the method offers a novel analytical tool for deciphering the neural code during arbitrary behavioral and mental processes.
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Affiliation(s)
- Keita Watanabe
- Department of Complexity Science and Engineering, University of Tokyo, Kashiwa, Japan.,RIKEN Center for Brain Science, Wako, Japan
| | | | - Masami Tatsuno
- Department of Neuroscience, Canadian Center for Behavioral Neuroscience, University of Lethbridge, Lethbridge, AB, Canada
| | - David R Euston
- Department of Neuroscience, Canadian Center for Behavioral Neuroscience, University of Lethbridge, Lethbridge, AB, Canada
| | - Tomoki Fukai
- Department of Complexity Science and Engineering, University of Tokyo, Kashiwa, Japan.,RIKEN Center for Brain Science, Wako, Japan.,Neural Coding and Brain Computing Unit, Okinawa Institute of Science and Technology, Okinawa, Japan
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23
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Dynamic Network Activation of Hypothalamic MCH Neurons in REM Sleep and Exploratory Behavior. J Neurosci 2019; 39:4986-4998. [PMID: 31036764 DOI: 10.1523/jneurosci.0305-19.2019] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2019] [Revised: 03/08/2019] [Accepted: 04/06/2019] [Indexed: 11/21/2022] Open
Abstract
Most brain neurons are active in waking, but hypothalamic neurons that synthesize the neuropeptide melanin-concentrating hormone (MCH) are claimed to be active only during sleep, particularly rapid eye movement (REM) sleep. Here we use deep-brain imaging to identify changes in fluorescence of the genetically encoded calcium (Ca2+) indicator GCaMP6 in individual hypothalamic neurons that contain MCH. An in vitro electrophysiology study determined a strong relationship between depolarization and Ca2+ fluorescence in MCH neurons. In 10 freely behaving MCH-cre mice (male and female), the highest fluorescence occurred in all recorded neurons (n = 106) in REM sleep relative to quiet waking or non-REM sleep. Unexpectedly, 70% of the MCH neurons had strong fluorescence activity when the mice explored novel objects. Spatial and temporal mapping of the change in fluorescence between pairs of MCH neurons revealed dynamic activation of MCH neurons during REM sleep and activation of a subset of the same neurons during exploratory behavior. Functional network activity maps will facilitate comparisons of not only single-neuron activity, but also network responses in different conditions and disease.SIGNIFICANCE STATEMENT Functional activity maps identify brain circuits responding to specific behaviors, including rapid eye movement sleep (REM sleep), a sleep phase when the brain is as active as in waking. To provide the first activity map of individual neurons during REM sleep, we use deep-brain calcium imaging in unrestrained mice to map the activity of hypothalamic melanin-concentrating hormone (MCH) neurons. MCH neurons were found to be synchronously active during REM sleep, and also during the exploration of novel objects. Spatial mapping revealed dynamic network activation during REM sleep and activation of a subset of the neurons during exploratory behavior. Functional activity maps at the cellular level in specific behaviors, including sleep, are needed to establish a brain connectome.
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24
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Lewis PA, Knoblich G, Poe G. How Memory Replay in Sleep Boosts Creative Problem-Solving. Trends Cogn Sci 2019; 22:491-503. [PMID: 29776467 DOI: 10.1016/j.tics.2018.03.009] [Citation(s) in RCA: 84] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2017] [Revised: 03/04/2018] [Accepted: 03/20/2018] [Indexed: 11/15/2022]
Abstract
Creative thought relies on the reorganisation of existing knowledge. Sleep is known to be important for creative thinking, but there is a debate about which sleep stage is most relevant, and why. We address this issue by proposing that rapid eye movement sleep, or 'REM', and non-REM sleep facilitate creativity in different ways. Memory replay mechanisms in non-REM can abstract rules from corpuses of learned information, while replay in REM may promote novel associations. We propose that the iterative interleaving of REM and non-REM across a night boosts the formation of complex knowledge frameworks, and allows these frameworks to be restructured, thus facilitating creative thought. We outline a hypothetical computational model which will allow explicit testing of these hypotheses.
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Affiliation(s)
| | - Günther Knoblich
- Department of Cognitive Science, Central European University, Budapest, Hungary
| | - Gina Poe
- Department of Integrative Biology and Physiology, UCLA, LA, USA
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25
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Yousefi A, Gillespie AK, Guidera JA, Karlsson M, Frank LM, Eden UT. Efficient Decoding of Multi-Dimensional Signals From Population Spiking Activity Using a Gaussian Mixture Particle Filter. IEEE Trans Biomed Eng 2019; 66:3486-3498. [PMID: 30932819 DOI: 10.1109/tbme.2019.2906640] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
New recording technologies and the potential for closed-loop experiments have led to an increasing demand for computationally efficient and accurate algorithms to decode population spiking activity in multi-dimensional spaces. Exact point process filters can accurately decode low-dimensional signals, but are computationally intractable for high-dimensional signals. Approximate Gaussian filters are computationally efficient, but are inaccurate when the signals have complex distributions and nonlinear dynamics. Even particle filter methods tend to become inefficient and inaccurate when the filter distribution has multiple peaks. Here, we develop a new point process filter algorithm that combines the computational efficiency of approximate Gaussian methods with a numerical accuracy that exceeds standard particle filters. We use a mixture of Gaussian model for the posterior at each time step, allowing for an analytic solution to the computationally expensive filter integration step. During non-spike intervals, the filter needs only to update the mean, covariance, and mixture weight of each component. At spike times, a sampling procedure is used to update the filtering distribution and find the number of Gaussian mixture components necessary to maintain an accurate approximation. We illustrate the application of this algorithm to the problem of decoding a rat's position and velocity in a maze from hippocampal place cell data using both 2-D and 4-D decoders.
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26
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Liu S, Iriate-Diaz J, Hatsopoulos NG, Ross CF, Takahashi K, Chen Z. Dynamics of motor cortical activity during naturalistic feeding behavior. J Neural Eng 2019; 16:026038. [PMID: 30721881 DOI: 10.1088/1741-2552/ab0474] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
OBJECTIVE The orofacial primary motor cortex (MIo) plays a critical role in controlling tongue and jaw movements during oral motor functions, such as chewing, swallowing and speech. However, the neural mechanisms of MIo during naturalistic feeding are still poorly understood. There is a strong need for a systematic study of motor cortical dynamics during feeding behavior. APPROACH To investigate the neural dynamics and variability of MIo neuronal activity during naturalistic feeding, we used chronically implanted micro-electrode arrays to simultaneously recorded ensembles of neuronal activity in the MIo of two monkeys (Macaca mulatta) while eating various types of food. We developed a Bayesian nonparametric latent variable model to reveal latent structures of neuronal population activity of the MIo and identify the complex mapping between MIo ensemble spike activity and high-dimensional kinematics. MAIN RESULTS Rhythmic neuronal firing patterns and oscillatory dynamics are evident in single-unit activity. At the population level, we uncovered the neural dynamics of rhythmic chewing, and quantified the neural variability at multiple timescales (complete feeding sequences, chewing sequence stages, chewing gape cycle phases) across food types. Our approach accommodates time-warping of chewing sequences and automatic model selection, and maps the latent states to chewing behaviors at fine timescales. SIGNIFICANCE Our work shows that neural representations of MIo ensembles display spatiotemporal patterns in chewing gape cycles at different chew sequence stages, and these patterns vary in a stage-dependent manner. Unsupervised learning and decoding analysis may reveal the link between complex MIo spatiotemporal patterns and chewing kinematics.
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Affiliation(s)
- Shizhao Liu
- Department of Psychiatry, Department of Neuroscience & Physiology, New York University School of Medicine, New York, NY 10016, United States of America. Department of Biomedical Engineering, Tsinghua University, Beijing, People's Republic of China
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Bergel A, Deffieux T, Demené C, Tanter M, Cohen I. Local hippocampal fast gamma rhythms precede brain-wide hyperemic patterns during spontaneous rodent REM sleep. Nat Commun 2018; 9:5364. [PMID: 30560939 PMCID: PMC6299136 DOI: 10.1038/s41467-018-07752-3] [Citation(s) in RCA: 62] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2018] [Accepted: 11/16/2018] [Indexed: 01/02/2023] Open
Abstract
Rapid eye movement sleep (REMS) is a peculiar brain state combining the behavioral components of sleep and the electrophysiological profiles of wake. After decades of research our understanding of REMS still is precluded by the difficulty to observe its spontaneous dynamics and the lack of multimodal recording approaches to build comprehensive datasets. We used functional ultrasound (fUS) imaging concurrently with extracellular recordings of local field potentials (LFP) to reveal brain-wide spatiotemporal hemodynamics of single REMS episodes. We demonstrate for the first time the close association between global hyperemic events – largely outmatching wake levels in most brain regions – and local hippocampal theta (6–10 Hz) and fast gamma (80–110 Hz) events in the CA1 region. In particular, the power of fast gamma oscillations strongly correlated with the amplitude of subsequent vascular events. Our findings challenge our current understanding of neurovascular coupling and question the evolutionary benefit of such energy-demanding patterns in REMS function. Neural activity during REM sleep is similar to the waking state. Here, the authors measure blood volume with neurofunctional ultrasound imaging together with hippocampal neural activity during REM sleep and report that fast gamma oscillations are coupled to a brain-wide upregulation of vascular flow.
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Affiliation(s)
- Antoine Bergel
- Sorbonne Université, CNRS, INSERM, Institut de Biologie Paris Seine-Neuroscience, 9 quai Saint-Bernard, 75005, Paris, France. .,Institut Langevin, ESPCI ParisTech, PSL Research University, CNRS UMR7587, INSERM U979, 17 rue Moreau, 75012, Paris, France. .,Université Paris Diderot, Sorbonne Paris Cité, 7 rue Thomas Mann, 75013, Paris, France.
| | - Thomas Deffieux
- Institut Langevin, ESPCI ParisTech, PSL Research University, CNRS UMR7587, INSERM U979, 17 rue Moreau, 75012, Paris, France
| | - Charlie Demené
- Institut Langevin, ESPCI ParisTech, PSL Research University, CNRS UMR7587, INSERM U979, 17 rue Moreau, 75012, Paris, France
| | - Mickaël Tanter
- Institut Langevin, ESPCI ParisTech, PSL Research University, CNRS UMR7587, INSERM U979, 17 rue Moreau, 75012, Paris, France
| | - Ivan Cohen
- Sorbonne Université, CNRS, INSERM, Institut de Biologie Paris Seine-Neuroscience, 9 quai Saint-Bernard, 75005, Paris, France.
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28
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Hu S, Ciliberti D, Grosmark AD, Michon F, Ji D, Penagos H, Buzsáki G, Wilson MA, Kloosterman F, Chen Z. Real-Time Readout of Large-Scale Unsorted Neural Ensemble Place Codes. Cell Rep 2018; 25:2635-2642.e5. [PMID: 30517852 PMCID: PMC6314684 DOI: 10.1016/j.celrep.2018.11.033] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Revised: 10/10/2018] [Accepted: 11/06/2018] [Indexed: 12/13/2022] Open
Abstract
Uncovering spatial representations from large-scale ensemble spike activity in specific brain circuits provides valuable feedback in closed-loop experiments. We develop a graphics processing unit (GPU)-powered population-decoding system for ultrafast reconstruction of spatial positions from rodents' unsorted spatiotemporal spiking patterns, during run behavior or sleep. In comparison with an optimized quad-core central processing unit (CPU) implementation, our approach achieves an ∼20- to 50-fold increase in speed in eight tested rat hippocampal, cortical, and thalamic ensemble recordings, with real-time decoding speed (approximately fraction of a millisecond per spike) and scalability up to thousands of channels. By accommodating parallel shuffling in real time (computation time <15 ms), our approach enables assessment of the statistical significance of online-decoded "memory replay" candidates during quiet wakefulness or sleep. This open-source software toolkit supports the decoding of spatial correlates or content-triggered experimental manipulation in closed-loop neuroscience experiments.
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Affiliation(s)
- Sile Hu
- Department of Instrument Science and Technology, College of Biomedical Engineering and Instrument Science, Zhejiang University, Hangzhou, Zhejiang 310027, China; Department of Psychiatry, Department of Neuroscience and Physiology, School of Medicine, New York University, New York, NY 10016, USA
| | - Davide Ciliberti
- Neuro-Electronics Research Flanders (NERF), IMEC, Leuven, Belgium; Brain & Cognition Research Unit, KU Leuven, Leuven, Belgium; VIB, Leuven, Belgium
| | - Andres D Grosmark
- Department of Neuroscience, Columbia University Medical Center, New York, NY 10019, USA
| | - Frédéric Michon
- Neuro-Electronics Research Flanders (NERF), IMEC, Leuven, Belgium; Brain & Cognition Research Unit, KU Leuven, Leuven, Belgium
| | - Daoyun Ji
- Department of Molecular and Cellular Biology, Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA
| | - Hector Penagos
- The Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, MA 02134, USA
| | - György Buzsáki
- The Neuroscience Institute, New York University School of Medicine, New York, NY 10016, USA
| | - Matthew A Wilson
- The Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, MA 02134, USA
| | - Fabian Kloosterman
- Neuro-Electronics Research Flanders (NERF), IMEC, Leuven, Belgium; Brain & Cognition Research Unit, KU Leuven, Leuven, Belgium; VIB, Leuven, Belgium.
| | - Zhe Chen
- Department of Psychiatry, Department of Neuroscience and Physiology, School of Medicine, New York University, New York, NY 10016, USA.
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Cazé R, Khamassi M, Aubin L, Girard B. Hippocampal replays under the scrutiny of reinforcement learning models. J Neurophysiol 2018; 120:2877-2896. [DOI: 10.1152/jn.00145.2018] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
Multiple in vivo studies have shown that place cells from the hippocampus replay previously experienced trajectories. These replays are commonly considered to mainly reflect memory consolidation processes. Some data, however, have highlighted a functional link between replays and reinforcement learning (RL). This theory, extensively used in machine learning, has introduced efficient algorithms and can explain various behavioral and physiological measures from different brain regions. RL algorithms could constitute a mechanistic description of replays and explain how replays can reduce the number of iterations required to explore the environment during learning. We review the main findings concerning the different hippocampal replay types and the possible associated RL models (either model-based, model-free, or hybrid model types). We conclude by tying these frameworks together. We illustrate the link between data and RL through a series of model simulations. This review, at the frontier between informatics and biology, paves the way for future work on replays.
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Affiliation(s)
- Romain Cazé
- Institute of Intelligent Systems and Robotics, Sorbonne Université, CNRS, Paris, France
| | - Mehdi Khamassi
- Institute of Intelligent Systems and Robotics, Sorbonne Université, CNRS, Paris, France
| | - Lise Aubin
- Institute of Intelligent Systems and Robotics, Sorbonne Université, CNRS, Paris, France
| | - Benoît Girard
- Institute of Intelligent Systems and Robotics, Sorbonne Université, CNRS, Paris, France
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30
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Krueger JM, Nguyen JT, Dykstra-Aiello CJ, Taishi P. Local sleep. Sleep Med Rev 2018; 43:14-21. [PMID: 30502497 DOI: 10.1016/j.smrv.2018.10.001] [Citation(s) in RCA: 64] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Revised: 10/04/2018] [Accepted: 10/08/2018] [Indexed: 12/20/2022]
Abstract
The historic sleep regulatory paradigm invokes "top-down" imposition of sleep on the brain by sleep regulatory circuits. While remaining conceptually useful, many sleep phenomena are difficult to explain using that paradigm, including, unilateral sleep, sleep-walking, and poor performance after sleep deprivation. Further, all animals sleep after non-lethal brain lesions, regardless of whether the lesion includes sleep regulatory circuits, suggesting that sleep is a fundamental property of small viable neuronal/glial networks. That small areas of the brain can exhibit non-rapid eye movement sleep-like states is summarized. Further, sleep-like states in neuronal/glial cultures are described. The local sleep states, whether in vivo or in vitro, share electrophysiological properties and molecular regulatory components with whole animal sleep and exhibit sleep homeostasis. The molecular regulatory components of sleep are also involved in plasticity and inflammation. Like sleep, these processes, are initiated by local cell-activity dependent events, yet have at higher levels of tissue organization whole body functions. While there are large literatures dealing with local initiation and regulation of plasticity and inflammation, the literature surrounding local sleep is in its infancy and clinical applications of the local sleep concept are absent. Regardless, the local use-dependent sleep paradigm can advise and advance future research and clinical applications.
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Affiliation(s)
- James M Krueger
- Department of Integrative Physiology and Neurobiology, College of Veterinary Medicine, Spokane, WA, USA.
| | - Joseph T Nguyen
- Department of Integrative Physiology and Neurobiology, College of Veterinary Medicine, Spokane, WA, USA
| | - Cheryl J Dykstra-Aiello
- Department of Integrative Physiology and Neurobiology, College of Veterinary Medicine, Spokane, WA, USA
| | - Ping Taishi
- Department of Integrative Physiology and Neurobiology, College of Veterinary Medicine, Spokane, WA, USA
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31
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Schreiner T, Doeller CF, Jensen O, Rasch B, Staudigl T. Theta Phase-Coordinated Memory Reactivation Reoccurs in a Slow-Oscillatory Rhythm during NREM Sleep. Cell Rep 2018; 25:296-301. [PMID: 30304670 PMCID: PMC6198287 DOI: 10.1016/j.celrep.2018.09.037] [Citation(s) in RCA: 59] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2017] [Revised: 07/17/2018] [Accepted: 09/12/2018] [Indexed: 11/18/2022] Open
Abstract
It has been proposed that sleep's contribution to memory consolidation is to reactivate prior encoded information. To elucidate the neural mechanisms carrying reactivation-related mnemonic information, we investigated whether content-specific memory signatures associated with memory reactivation during wakefulness reoccur during subsequent sleep. We show that theta oscillations orchestrate the reactivation of memories during both wakefulness and sleep. Reactivation patterns during sleep autonomously re-emerged at a rate of ∼1 Hz, indicating a coordination by slow oscillatory activity.
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Affiliation(s)
- Thomas Schreiner
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK; Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, the Netherlands.
| | - Christian F Doeller
- Kavli Institute for Systems Neuroscience, Centre for Neural Computation, The Egil and Pauline Braathen and Fred Kavli Centre for Cortical Microcircuits, Norwegian University of Science and Technology, NTNU, Trondheim, Norway; Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Ole Jensen
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK
| | - Björn Rasch
- Department of Psychology, University of Fribourg, Fribourg, Switzerland
| | - Tobias Staudigl
- Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, the Netherlands; Department of Neurosurgery, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
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32
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Nasehi M, Mosavi-Nezhad SM, Khakpai F, Zarrindast MR. The role of omega-3 on modulation of cognitive deficiency induced by REM sleep deprivation in rats. Behav Brain Res 2018; 351:152-160. [DOI: 10.1016/j.bbr.2018.06.002] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Revised: 06/01/2018] [Accepted: 06/01/2018] [Indexed: 01/01/2023]
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33
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Schapiro AC, McDevitt EA, Rogers TT, Mednick SC, Norman KA. Human hippocampal replay during rest prioritizes weakly learned information and predicts memory performance. Nat Commun 2018; 9:3920. [PMID: 30254219 PMCID: PMC6156217 DOI: 10.1038/s41467-018-06213-1] [Citation(s) in RCA: 117] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2018] [Accepted: 08/20/2018] [Indexed: 12/20/2022] Open
Abstract
The hippocampus replays experiences during quiet rest periods, and this replay benefits subsequent memory. A critical open question is how memories are prioritized for this replay. We used functional magnetic resonance imaging (fMRI) pattern analysis to track item-level replay in the hippocampus during an awake rest period after participants studied 15 objects and completed a memory test. Objects that were remembered less well were replayed more during the subsequent rest period, suggesting a prioritization process in which weaker memories—memories most vulnerable to forgetting—are selected for replay. In a second session 12 hours later, more replay of an object during a rest period predicted better subsequent memory for that object. Replay predicted memory improvement across sessions only for participants who slept during that interval. Our results provide evidence that replay in the human hippocampus prioritizes weakly learned information, predicts subsequent memory performance, and relates to memory improvement across a delay with sleep. The hippocampus is known to 'replay' experiences and memories during rest periods, but it is unclear how particular memories are prioritized for replay. Here, the authors show that information that is remembered less well is replayed more often, suggesting that weaker memories are selected for replay.
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Affiliation(s)
- Anna C Schapiro
- Department of Psychiatry, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, MA, 02215, USA.
| | - Elizabeth A McDevitt
- Princeton Neuroscience Institute and Department of Psychology, Princeton University, Princeton, NJ, 08544, USA
| | - Timothy T Rogers
- Department of Psychology, University of Wisconsin-Madison, Madison, WI, 53706, USA
| | - Sara C Mednick
- Department of Cognitive Sciences, University of California-Irvine, Irvine, CA, 92617, USA
| | - Kenneth A Norman
- Princeton Neuroscience Institute and Department of Psychology, Princeton University, Princeton, NJ, 08544, USA
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34
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Cortical circuit activity underlying sleep slow oscillations and spindles. Proc Natl Acad Sci U S A 2018; 115:E9220-E9229. [PMID: 30209214 DOI: 10.1073/pnas.1805517115] [Citation(s) in RCA: 148] [Impact Index Per Article: 24.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Slow oscillations and sleep spindles are hallmarks of the EEG during slow-wave sleep (SWS). Both oscillatory events, especially when co-occurring in the constellation of spindles nesting in the slow oscillation upstate, are considered to support memory formation and underlying synaptic plasticity. The regulatory mechanisms of this function at the circuit level are poorly understood. Here, using two-photon imaging in mice, we relate EEG-recorded slow oscillations and spindles to calcium signals recorded from the soma of cortical putative pyramidal-like (Pyr) cells and neighboring parvalbumin-positive interneurons (PV-Ins) or somatostatin-positive interneurons (SOM-Ins). Pyr calcium activity was increased more than threefold when spindles co-occurred with slow oscillation upstates compared with slow oscillations or spindles occurring in isolation. Independent of whether or not a spindle was nested in the slow oscillation upstate, the slow oscillation downstate was preceded by enhanced calcium signal in SOM-Ins that vanished during the upstate, whereas spindles were associated with strongly increased PV-In calcium activity. Additional wide-field calcium imaging of Pyr cells confirmed the enhanced calcium activity and its widespread topography associated with spindles nested in slow oscillation upstates. In conclusion, when spindles are nested in slow oscillation upstates, maximum Pyr activity appears to concur with strong perisomatic inhibition of Pyr cells via PV-Ins and low dendritic inhibition via SOM-Ins (i.e., conditions that might optimize synaptic plasticity within local cortical circuits).
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35
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Abstract
It has been suggested that reactivation of previously acquired experiences or stored information in declarative memories in the hippocampus and neocortex contributes to memory consolidation and learning. Understanding memory consolidation depends crucially on the development of robust statistical methods for assessing memory reactivation. To date, several statistical methods have seen established for assessing memory reactivation based on bursts of ensemble neural spike activity during offline states. Using population-decoding methods, we propose a new statistical metric, the weighted distance correlation, to assess hippocampal memory reactivation (i.e., spatial memory replay) during quiet wakefulness and slow-wave sleep. The new metric can be combined with an unsupervised population decoding analysis, which is invariant to latent state labeling and allows us to detect statistical dependency beyond linearity in memory traces. We validate the new metric using two rat hippocampal recordings in spatial navigation tasks. Our proposed analysis framework may have a broader impact on assessing memory reactivations in other brain regions under different behavioral tasks.
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Affiliation(s)
- Shizhao Liu
- Departments of Psychiatry and of Department of Neuroscience and Physiology, New York University School of Medicine, New York, NY 10016, U.S.A., and Department of Biomedical Engineering, Tsinghua University, Beijing, China
| | - Andres D Grosmark
- Department of Neuroscience, Columbia University Medical Center, New York, NY 10019, U.S.A.
| | - Zhe Chen
- Departments of Psychiatry and of Neuroscience and Physiology, New York University School of Medicine, New York, NY 10016, U.S.A.
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36
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Davis P, Reijmers LG. The dynamic nature of fear engrams in the basolateral amygdala. Brain Res Bull 2018; 141:44-49. [PMID: 29269319 PMCID: PMC6005719 DOI: 10.1016/j.brainresbull.2017.12.004] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Revised: 11/15/2017] [Accepted: 12/07/2017] [Indexed: 12/27/2022]
Abstract
Great progress has been made in our understanding of how so-called memory engrams in the brain enable the storage and retrieval of memories. This has led to the realization that across the lifetime of an animal, the spatial and temporal properties of a memory engram are not fixed, but instead are subjected to dynamic modifications that can be both dependent and independent on additional experiences. The dynamic nature of engrams is especially relevant in the case of fear memories, whose contributions to an animal's evolutionary fitness depend on a delicate balance of stability and flexibility. Though fear memories have the potential to last a lifetime, their expression also needs to be properly tuned to prevent maladaptive behavior, such as seen in patients with post-traumatic stress disorder. To achieve this balance, fear engrams are subjected to complex spatiotemporal dynamics, making them informative examples of the "dynamic engram". In this review, we discuss the current understanding of the dynamic nature of fear engrams in the basolateral amygdala, a brain region that plays a central role in fear memory encoding and expression. We propose that this understanding can be further advanced by studying how fast dynamics, such as oscillatory circuit activity, support the storage and retrieval of fear engrams that can be stable over long time intervals.
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Affiliation(s)
- Patrick Davis
- Department of Neuroscience, Tufts University School of Medicine, Boston, MA, United States; Medical Scientist Training Program and Graduate Program in Neuroscience, Sackler School of Graduate Biomedical Sciences, Tufts University, Boston, MA, United States
| | - Leon G Reijmers
- Department of Neuroscience, Tufts University School of Medicine, Boston, MA, United States.
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37
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Maboudi K, Ackermann E, de Jong LW, Pfeiffer BE, Foster D, Diba K, Kemere C. Uncovering temporal structure in hippocampal output patterns. eLife 2018; 7:34467. [PMID: 29869611 PMCID: PMC6013258 DOI: 10.7554/elife.34467] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Accepted: 05/14/2018] [Indexed: 12/02/2022] Open
Abstract
Place cell activity of hippocampal pyramidal cells has been described as the cognitive substrate of spatial memory. Replay is observed during hippocampal sharp-wave-ripple-associated population burst events (PBEs) and is critical for consolidation and recall-guided behaviors. PBE activity has historically been analyzed as a phenomenon subordinate to the place code. Here, we use hidden Markov models to study PBEs observed in rats during exploration of both linear mazes and open fields. We demonstrate that estimated models are consistent with a spatial map of the environment, and can even decode animals’ positions during behavior. Moreover, we demonstrate the model can be used to identify hippocampal replay without recourse to the place code, using only PBE model congruence. These results suggest that downstream regions may rely on PBEs to provide a substrate for memory. Additionally, by forming models independent of animal behavior, we lay the groundwork for studies of non-spatial memory.
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Affiliation(s)
- Kourosh Maboudi
- Departmentof Anesthesiology, University of Michigan, Ann Arbor, United States.,Department of Psychology, University of Wisconsin-Milwaukee, Milwaukee, United States
| | - Etienne Ackermann
- Department of Electrical and Computer Engineering, Rice University, Houston, United States
| | - Laurel Watkins de Jong
- Departmentof Anesthesiology, University of Michigan, Ann Arbor, United States.,Department of Psychology, University of Wisconsin-Milwaukee, Milwaukee, United States
| | - Brad E Pfeiffer
- Department of Neuroscience, University of Texas Southwestern, Dallas, United States
| | - David Foster
- Department of Psychology, University of California, Berkeley, Berkeley, United States.,Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, United States
| | - Kamran Diba
- Departmentof Anesthesiology, University of Michigan, Ann Arbor, United States.,Department of Psychology, University of Wisconsin-Milwaukee, Milwaukee, United States
| | - Caleb Kemere
- Department of Electrical and Computer Engineering, Rice University, Houston, United States
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38
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Bermudez-Contreras E, Chekhov S, Sun J, Tarnowsky J, McNaughton BL, Mohajerani MH. High-performance, inexpensive setup for simultaneous multisite recording of electrophysiological signals and mesoscale voltage imaging in the mouse cortex. NEUROPHOTONICS 2018; 5:025005. [PMID: 29651448 PMCID: PMC5874445 DOI: 10.1117/1.nph.5.2.025005] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2017] [Accepted: 03/05/2018] [Indexed: 05/17/2023]
Abstract
Simultaneous recording of optical and electrophysiological signals from multiple cortical areas may provide crucial information to expand our understanding of cortical function. However, the insertion of multiple electrodes into the brain may compromise optical imaging by both restricting the field of view and interfering with the approaches used to stabilize the specimen. Existing methods that combine electrophysiological recording and optical imaging in vivo implement either multiple surface electrodes, silicon probes, or a single electrode for deeper recordings. To address such limitation, we built a microelectrode array (hyperdrive, patent US5928143 A) compatible with wide-field imaging that allows insertion of up to 12 probes into a large brain area (8 mm diameter). The hyperdrive is comprised of a circle of individual microdrives where probes are positioned at an angle leaving a large brain area unobstructed for wide-field imaging. Multiple tetrodes and voltage-sensitive dye imaging were used for acute simultaneous registration of spontaneous and evoked cortical activity in anesthetized mice. The electrophysiological signals were used to extract local field potential (LFP) traces, multiunit, and single-unit spiking activity. To demonstrate our approach, we compared LFP and VSD signals over multiple regions of the cortex and analyzed the relationship between single-unit and global cortical population activities. The study of the interactions between cortical activity at local and global scales, such as the one presented in this work, can help to expand our knowledge of brain function.
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Affiliation(s)
- Edgar Bermudez-Contreras
- University of Lethbridge, Canadian Centre for Behavioural Neuroscience, Department of Neuroscience, Lethbridge, Alberta, Canada
| | - Sergey Chekhov
- University of Lethbridge, Canadian Centre for Behavioural Neuroscience, Department of Neuroscience, Lethbridge, Alberta, Canada
| | - Jianjun Sun
- University of Lethbridge, Canadian Centre for Behavioural Neuroscience, Department of Neuroscience, Lethbridge, Alberta, Canada
| | - Jennifer Tarnowsky
- University of Lethbridge, Canadian Centre for Behavioural Neuroscience, Department of Neuroscience, Lethbridge, Alberta, Canada
| | - Bruce L. McNaughton
- University of Lethbridge, Canadian Centre for Behavioural Neuroscience, Department of Neuroscience, Lethbridge, Alberta, Canada
- University of California at Irvine, Center for the Neurobiology of Learning and Memory, Department of Neurobiology and Behavior, Irvine, California, United States
- Address all correspondence to: Bruce L. McNaughton, E-mail: ; Majid H. Mohajerani, E-mail:
| | - Majid H. Mohajerani
- University of Lethbridge, Canadian Centre for Behavioural Neuroscience, Department of Neuroscience, Lethbridge, Alberta, Canada
- Address all correspondence to: Bruce L. McNaughton, E-mail: ; Majid H. Mohajerani, E-mail:
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39
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Prioritized Sweeping Neural DynaQ with Multiple Predecessors, and Hippocampal Replays. BIOMIMETIC AND BIOHYBRID SYSTEMS 2018. [DOI: 10.1007/978-3-319-95972-6_4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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NLGN1 and NLGN2 in the prefrontal cortex: their role in memory consolidation and strengthening. Curr Opin Neurobiol 2017; 48:122-130. [PMID: 29278843 DOI: 10.1016/j.conb.2017.12.003] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2017] [Revised: 11/27/2017] [Accepted: 12/10/2017] [Indexed: 12/21/2022]
Abstract
The prefrontal cortex (PFC) is critical for memory formation, but the underlying molecular mechanisms are poorly understood. Clinical and animal model studies have shown that changes in PFC excitation and inhibition are important for cognitive functions as well as related disorders. Here, we discuss recent findings revealing the roles of the excitatory and inhibitory synaptic proteins neuroligin 1 (NLGN1) and NLGN2 in the PFC in memory formation and modulation of memory strength. We propose that shifts in NLGN1 and NLGN2 expression in specific excitatory and inhibitory neuronal subpopulations in response to experience regulate the dynamic processes of memory consolidation and strengthening. Because excitatory/inhibitory imbalances accompany neuropsychiatric disorders in which strength and flexibility of representations play important roles, understanding these mechanisms may suggest novel therapies.
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