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Zhang B, Ma Z, Guo H, Chen S, Liu J. Single-cell RNA-sequencing provides new insights into the cell-specific expression patterns and transcriptional regulation of photosynthetic genes in bermudagrass leaf blades. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 213:108857. [PMID: 38905728 DOI: 10.1016/j.plaphy.2024.108857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 06/06/2024] [Accepted: 06/18/2024] [Indexed: 06/23/2024]
Abstract
As an important warm-season turfgrass species, bermudagrass (Cynodon dactylon L.) flourishes in warm areas around the world due to the existence of the C4 photosynthetic pathway. However, how C4 photosynthesis operates in bermudagrass leaves is still poorly understood. In this study, we performed single-cell RNA-sequencing on 5296 cells from bermudagrass leaf blades. Eight cell clusters corresponding to mesophyll, bundle sheath, epidermis and vascular bundle cells were successfully identified using known cell marker genes. Expression profiling indicated that genes encoding NADP-dependent malic enzymes (NADP-MEs) were highly expressed in bundle sheath cells, whereas NAD-ME genes were weakly expressed in all cell types, suggesting C4 photosynthesis of bermudagrass leaf blades might be NADP-ME type rather than NAD-ME type. The results also indicated that starch synthesis-related genes showed preferential expression in bundle sheath cells, whereas starch degradation-related genes were highly expressed in mesophyll cells, which agrees with the observed accumulation of starch-filled chloroplasts in bundle sheath cells. Gene co-expression analysis further revealed that different families of transcription factors were co-expressed with multiple C4 photosynthesis-related genes, suggesting a complex transcription regulatory network of C4 photosynthesis might exist in bermudagrass leaf blades. These findings collectively provided new insights into the cell-specific expression patterns and transcriptional regulation of photosynthetic genes in bermudagrass.
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Affiliation(s)
- Bing Zhang
- College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China.
| | - Ziyan Ma
- College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China
| | - Hailin Guo
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing 210014, China
| | - Si Chen
- College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China
| | - Jianxiu Liu
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing 210014, China
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2
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Yang QY, Wang XQ, Yang YJ, Huang W. Fluctuating light induces a significant photoinhibition of photosystem I in maize. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 207:108426. [PMID: 38340689 DOI: 10.1016/j.plaphy.2024.108426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 01/19/2024] [Accepted: 02/04/2024] [Indexed: 02/12/2024]
Abstract
In nature, light intensity usually fluctuates and a sudden shade-sun transition can induce photodamage to photosystem I (PSI) in many angiosperms. Photosynthetic regulation in fluctuating light (FL) has been studied extensively in C3 plants; however, little is known about how C4 plants cope FL to prevent PSI photoinhibition. We here compared photosynthetic responses to FL between maize (Zea mays, C4) and tomato (Solanum lycopersicum, C3) grown under full sunlight. Maize leaves had significantly higher cyclic electron flow (CEF) activity and lower photorespiration activity than tomato. Upon a sudden shade-sun transition, maize showed a significant stronger transient PSI over-reduction than tomato, resulting in a significant greater PSI photoinhibition in maize after FL treatment. During the first seconds upon shade-sun transition, CEF was stimulated in maize at a much higher extent than tomato, favoring the rapid formation of trans-thylakoid proton gradient (ΔpH), which was helped by a transient down-regulation of chloroplast ATP synthase activity. Therefore, modulation of ΔpH by regulation of CEF and chloroplast ATP synthase adjusted PSI redox state at donor side, which partially compensated for the deficiency of photorespiration. We propose that C4 plants use different photosynthetic strategies for coping with FL as compared with C3 plants.
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Affiliation(s)
- Qiu-Yan Yang
- School of Life Sciences, Shannxi Normal University, Xi'an, 710119, China; Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Xiao-Qian Wang
- School of Life Sciences, Shannxi Normal University, Xi'an, 710119, China
| | - Ying-Jie Yang
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming, 650205, China.
| | - Wei Huang
- Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
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3
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Zhang Q, Tian S, Chen G, Tang Q, Zhang Y, Fleming AJ, Zhu XG, Wang P. Regulatory NADH dehydrogenase-like complex optimizes C 4 photosynthetic carbon flow and cellular redox in maize. THE NEW PHYTOLOGIST 2024; 241:82-101. [PMID: 37872738 DOI: 10.1111/nph.19332] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2023] [Accepted: 09/20/2023] [Indexed: 10/25/2023]
Abstract
C4 plants typically operate a CO2 concentration mechanism from mesophyll (M) cells into bundle sheath (BS) cells. NADH dehydrogenase-like (NDH) complex is enriched in the BS cells of many NADP-malic enzyme (ME) type C4 plants and is more abundant in C4 than in C3 plants, but to what extent it is involved in the CO2 concentration mechanism remains to be experimentally investigated. We created maize and rice mutants deficient in NDH function and then used a combination of transcriptomic, proteomic, and metabolomic approaches for comparative analysis. Considerable decreases in growth, photosynthetic activities, and levels of key photosynthetic proteins were observed in maize but not rice mutants. However, transcript abundance for many cyclic electron transport (CET) and Calvin-Benson cycle components, as well as BS-specific C4 enzymes, was increased in maize mutants. Metabolite analysis of the maize ndh mutants revealed an increased NADPH : NADP ratio, as well as malate, ribulose 1,5-bisphosphate (RuBP), fructose 1,6-bisphosphate (FBP), and photorespiration intermediates. We suggest that by optimizing NADPH and malate levels and adjusting NADP-ME activity, NDH functions to balance metabolic and redox states in the BS cells of maize (in addition to ATP supply), coordinating photosynthetic transcript abundance and protein content, thus directly regulating the carbon flow in the two-celled C4 system of maize.
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Affiliation(s)
- Qiqi Zhang
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Shilong Tian
- University of Chinese Academy of Sciences, Beijing, China
| | - Genyun Chen
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Qiming Tang
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yijing Zhang
- State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Biochemistry, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai, 200438, China
| | - Andrew J Fleming
- School of Biosciences, University of Sheffield, Western Bank, Sheffield, S10 2TN, UK
| | - Xin-Guang Zhu
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Peng Wang
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
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Filyushin MA, Kochieva EZ, Shchennikova AV. ZmDREB2.9 Gene in Maize ( Zea mays L.): Genome-Wide Identification, Characterization, Expression, and Stress Response. PLANTS (BASEL, SWITZERLAND) 2022; 11:3060. [PMID: 36432789 PMCID: PMC9694119 DOI: 10.3390/plants11223060] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 11/07/2022] [Accepted: 11/10/2022] [Indexed: 06/16/2023]
Abstract
Dehydration-responsive element-binding (DREB) transcription factors of the A2 subfamily play key roles in plant stress responses. In this study, we identified and characterized a new A2-type DREB gene, ZmDREB2.9, in the Zea mays cv. B73 genome and compared its expression profile with those of the known A2-type maize genes ZmDREB2.1-2.8. ZmDREB2.9 was mapped to chromosome 8, contained 18 predicted hormone- and stress-responsive cis-elements in the promoter, and had two splice isoforms: short ZmDREB2.9-S preferentially expressed in the leaves, embryos, and endosperm and long ZmDREB2.9-L expressed mostly in the male flowers, stamens, and ovaries. Phylogenetically, ZmDREB2.9 was closer to A. thaliana DREB2A than the other ZmDREB2 factors. ZmDREB2.9-S, ZmDREB2.2, and ZmDREB2.1/2A were upregulated in response to cold, drought, and abscisic acid and may play redundant roles in maize stress resistance. ZmDREB2.3, ZmDREB2.4, and ZmDREB2.6 were not expressed in seedlings and could be pseudogenes. ZmDREB2.7 and ZmDREB2.8 showed similar transcript accumulation in response to cold and abscisic acid and could be functionally redundant. Our results provide new data on Z. mays DREB2 factors, which can be used for further functional studies as well as in breeding programs to improve maize stress tolerance.
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El-Sappah AH, Rather SA, Wani SH, Elrys AS, Bilal M, Huang Q, Dar ZA, Elashtokhy MMA, Soaud N, Koul M, Mir RR, Yan K, Li J, El-Tarabily KA, Abbas M. Heat Stress-Mediated Constraints in Maize ( Zea mays) Production: Challenges and Solutions. FRONTIERS IN PLANT SCIENCE 2022; 13:879366. [PMID: 35615131 PMCID: PMC9125997 DOI: 10.3389/fpls.2022.879366] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2022] [Accepted: 03/30/2022] [Indexed: 05/05/2023]
Abstract
An increase in temperature and extreme heat stress is responsible for the global reduction in maize yield. Heat stress affects the integrity of the plasma membrane functioning of mitochondria and chloroplast, which further results in the over-accumulation of reactive oxygen species. The activation of a signal cascade subsequently induces the transcription of heat shock proteins. The denaturation and accumulation of misfolded or unfolded proteins generate cell toxicity, leading to death. Therefore, developing maize cultivars with significant heat tolerance is urgently required. Despite the explored molecular mechanism underlying heat stress response in some plant species, the precise genetic engineering of maize is required to develop high heat-tolerant varieties. Several agronomic management practices, such as soil and nutrient management, plantation rate, timing, crop rotation, and irrigation, are beneficial along with the advanced molecular strategies to counter the elevated heat stress experienced by maize. This review summarizes heat stress sensing, induction of signaling cascade, symptoms, heat stress-related genes, the molecular feature of maize response, and approaches used in developing heat-tolerant maize varieties.
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Affiliation(s)
- Ahmed H. El-Sappah
- School of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China
- Department of Genetics, Faculty of Agriculture, Zagazig University, Zagazig, Egypt
- Key Laboratory of Sichuan Province for Refining Sichuan Tea, Yibin, China
| | - Shabir A. Rather
- Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, China
| | - Shabir Hussain Wani
- Mountain Research Centre for Field Crops Khudwani Anantnag, SKUAST–Kashmir, Srinagar, India
| | - Ahmed S. Elrys
- Department of Soil Science, Faculty of Agriculture, Zagazig University, Zagazig, Egypt
| | - Muhammad Bilal
- School of Life Sciences and Food Engineering, Huaiyin Institute of Technology, Huaian, China
| | - Qiulan Huang
- Key Laboratory of Sichuan Province for Refining Sichuan Tea, Yibin, China
- College of Tea Science, Yibin University, Yibin, China
| | - Zahoor Ahmad Dar
- Dryland Agriculture Research Station, SKUAST–Kashmir, Srinagar, India
| | | | - Nourhan Soaud
- Department of Crop Science, Faculty of Agriculture, Zagazig University, Zagazig, Egypt
| | - Monika Koul
- Department of Botany, Hansraj College, University of Delhi, New Delhi, India
| | - Reyazul Rouf Mir
- Division of Genetics and Plant Breeding, Faculty of Agriculture (FoA), SKUAST–Kashmir, Sopore, India
| | - Kuan Yan
- School of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China
- Key Laboratory of Sichuan Province for Refining Sichuan Tea, Yibin, China
| | - Jia Li
- School of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China
- Key Laboratory of Sichuan Province for Refining Sichuan Tea, Yibin, China
| | - Khaled A. El-Tarabily
- Department of Biology, College of Science, United Arab Emirates University, Al Ain, United Arab Emirates
- Harry Butler Institute, Murdoch University, Murdoch, WA, Australia
| | - Manzar Abbas
- School of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China
- Key Laboratory of Sichuan Province for Refining Sichuan Tea, Yibin, China
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Wasilewska-Dębowska W, Zienkiewicz M, Drozak A. How Light Reactions of Photosynthesis in C4 Plants Are Optimized and Protected under High Light Conditions. Int J Mol Sci 2022; 23:ijms23073626. [PMID: 35408985 PMCID: PMC8998801 DOI: 10.3390/ijms23073626] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 03/23/2022] [Accepted: 03/24/2022] [Indexed: 02/04/2023] Open
Abstract
Most C4 plants that naturally occur in tropical or subtropical climates, in high light environments, had to evolve a series of adaptations of photosynthesis that allowed them to grow under these conditions. In this review, we summarize mechanisms that ensure the balancing of energy distribution, counteract photoinhibition, and allow the dissipation of excess light energy. They secure effective electron transport in light reactions of photosynthesis, which will lead to the production of NADPH and ATP. Furthermore, a higher content of the cyclic electron transport components and an increase in ATP production are observed, which is necessary for the metabolism of C4 for effective assimilation of CO2. Most of the data are provided by studies of the genus Flaveria, where species belonging to different metabolic subtypes and intermediate forms between C3 and C4 are present. All described mechanisms that function in mesophyll and bundle sheath chloroplasts, into which photosynthetic reactions are divided, may differ in metabolic subtypes as a result of the different organization of thylakoid membranes, as well as the different demand for ATP and NADPH. This indicates that C4 plants have plasticity in the utilization of pathways in which efficient use and dissipation of excitation energy are realized.
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7
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Chotewutmontri P, Barkan A. Ribosome profiling elucidates differential gene expression in bundle sheath and mesophyll cells in maize. PLANT PHYSIOLOGY 2021; 187:59-72. [PMID: 34618144 PMCID: PMC8418429 DOI: 10.1093/plphys/kiab272] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Accepted: 06/10/2021] [Indexed: 05/20/2023]
Abstract
The efficiencies offered by C4 photosynthesis have motivated efforts to understand its biochemical, genetic, and developmental basis. Reactions underlying C4 traits in most C4 plants are partitioned between two cell types, bundle sheath (BS), and mesophyll (M) cells. RNA-seq has been used to catalog differential gene expression in BS and M cells in maize (Zea mays) and several other C4 species. However, the contribution of translational control to maintaining the distinct proteomes of BS and M cells has not been addressed. In this study, we used ribosome profiling and RNA-seq to describe translatomes, translational efficiencies, and microRNA abundance in BS- and M-enriched fractions of maize seedling leaves. A conservative interpretation of our data revealed 182 genes exhibiting cell type-dependent differences in translational efficiency, 31 of which encode proteins with core roles in C4 photosynthesis. Our results suggest that non-AUG start codons are used preferentially in upstream open reading frames of BS cells, revealed mRNA sequence motifs that correlate with cell type-dependent translation, and identified potential translational regulators that are differentially expressed. In addition, our data expand the set of genes known to be differentially expressed in BS and M cells, including genes encoding transcription factors and microRNAs. These data add to the resources for understanding the evolutionary and developmental basis of C4 photosynthesis and for its engineering into C3 crops.
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Affiliation(s)
- Prakitchai Chotewutmontri
- Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403 USA
- Author for communication:
| | - Alice Barkan
- Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403 USA
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8
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Taniguchi YY, Gowik U, Kinoshita Y, Kishizaki R, Ono N, Yokota A, Westhoff P, Munekage YN. Dynamic changes of genome sizes and gradual gain of cell-specific distribution of C 4 enzymes during C 4 evolution in genus Flaveria. THE PLANT GENOME 2021; 14:e20095. [PMID: 33913619 DOI: 10.1002/tpg2.20095] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Accepted: 02/20/2021] [Indexed: 06/12/2023]
Abstract
C4 plants are believed to have evolved from C3 plants through various C3 -C4 intermediate stages in which a photorespiration-dependent CO2 concentration system known as C2 photosynthesis operates. Genes involved in the C4 cycle were thought to be recruited from orthologs present in C3 species and developed cell-specific expression during C4 evolution. To understand the process of establishing C4 photosynthesis, we performed whole-genome sequencing and investigated expression and mesophyll- or bundle-sheath-cell-specific localization of phosphoenolpyruvate carboxylase (PEPC), NADP-malic enzyme (NADP-ME), pyruvate, orthophosphate dikinase (PPDK) in C3 , C3 -C4 intermediate, C4 -like, and C4 Flaveria species. While genome sizes vary greatly, the number of predicted protein-coding genes was similar among C3 , C3 -C4 intermediate, C4 -like, and C4 Flaveria species. Cell-specific localization of the PEPC, NADP-ME, and PPDK transcripts was insignificant or weak in C3 -C4 intermediate species, whereas these transcripts were expressed cell-type specific in C4 -like species. These results showed that elevation of gene expression and cell-specific control of pre-existing C4 cycle genes in C3 species was involved in C4 evolution. Gene expression was gradually enhanced during C4 evolution, whereas cell-specific control was gained independently of quantitative transcriptional activation during evolution from C3 -C4 intermediate to C4 photosynthesis in genus Flaveria.
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Affiliation(s)
- Yukimi Y Taniguchi
- School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo, 669-1337, Japan
| | - Udo Gowik
- Institute of Plant Molecular and Developmental Biology, Heinrich Heine University, Universitätsstr. 1, Dusseldorf, 40225, Germany
| | - Yuto Kinoshita
- School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo, 669-1337, Japan
| | - Risa Kishizaki
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192, Japan
| | - Naoaki Ono
- Data Science Center, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192, Japan
| | - Akiho Yokota
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192, Japan
| | - Peter Westhoff
- Institute of Plant Molecular and Developmental Biology, Heinrich Heine University, Universitätsstr. 1, Dusseldorf, 40225, Germany
| | - Yuri N Munekage
- School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo, 669-1337, Japan
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9
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Jeon S, Koh HG, Cho JM, Kang NK, Chang YK. Enhancement of lipid production in Nannochloropsis salina by overexpression of endogenous NADP-dependent malic enzyme. ALGAL RES 2021. [DOI: 10.1016/j.algal.2021.102218] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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10
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Ermakova M, Arrivault S, Giuliani R, Danila F, Alonso‐Cantabrana H, Vlad D, Ishihara H, Feil R, Guenther M, Borghi GL, Covshoff S, Ludwig M, Cousins AB, Langdale JA, Kelly S, Lunn JE, Stitt M, von Caemmerer S, Furbank RT. Installation of C 4 photosynthetic pathway enzymes in rice using a single construct. PLANT BIOTECHNOLOGY JOURNAL 2021; 19:575-588. [PMID: 33016576 PMCID: PMC7955876 DOI: 10.1111/pbi.13487] [Citation(s) in RCA: 54] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Revised: 08/08/2020] [Accepted: 09/23/2020] [Indexed: 05/06/2023]
Abstract
Introduction of a C4 photosynthetic mechanism into C3 crops offers an opportunity to improve photosynthetic efficiency, biomass and yield in addition to potentially improving nitrogen and water use efficiency. To create a two-cell metabolic prototype for an NADP-malic enzyme type C4 rice, we transformed Oryza sativa spp. japonica cultivar Kitaake with a single construct containing the coding regions of carbonic anhydrase, phosphoenolpyruvate (PEP) carboxylase, NADP-malate dehydrogenase, pyruvate orthophosphate dikinase and NADP-malic enzyme from Zea mays, driven by cell-preferential promoters. Gene expression, protein accumulation and enzyme activity were confirmed for all five transgenes, and intercellular localization of proteins was analysed. 13 CO2 labelling demonstrated a 10-fold increase in flux though PEP carboxylase, exceeding the increase in measured in vitro enzyme activity, and estimated to be about 2% of the maize photosynthetic flux. Flux from malate via pyruvate to PEP remained low, commensurate with the low NADP-malic enzyme activity observed in the transgenic lines. Physiological perturbations were minor and RNA sequencing revealed no substantive effects of transgene expression on other endogenous rice transcripts associated with photosynthesis. These results provide promise that, with enhanced levels of the C4 proteins introduced thus far, a functional C4 pathway is achievable in rice.
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Affiliation(s)
- Maria Ermakova
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonACTAustralia
| | | | - Rita Giuliani
- School of Biological SciencesMolecular Plant SciencesWashington State UniversityPullmanWAUSA
| | - Florence Danila
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonACTAustralia
| | - Hugo Alonso‐Cantabrana
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonACTAustralia
- Grains Research and Development CorporationBartonACTAustralia
| | - Daniela Vlad
- Department of Plant SciencesUniversity of OxfordOxfordUK
| | - Hirofumi Ishihara
- Max Planck Institute of Molecular Plant PhysiologyPotsdam‐GolmGermany
| | - Regina Feil
- Max Planck Institute of Molecular Plant PhysiologyPotsdam‐GolmGermany
| | - Manuela Guenther
- Max Planck Institute of Molecular Plant PhysiologyPotsdam‐GolmGermany
| | - Gian Luca Borghi
- Max Planck Institute of Molecular Plant PhysiologyPotsdam‐GolmGermany
| | - Sarah Covshoff
- Department of Plant SciencesUniversity of CambridgeCambridgeUK
| | - Martha Ludwig
- School of Molecular SciencesThe University of Western AustraliaCrawleyWAAustralia
| | - Asaph B. Cousins
- School of Biological SciencesMolecular Plant SciencesWashington State UniversityPullmanWAUSA
| | | | - Steven Kelly
- Department of Plant SciencesUniversity of OxfordOxfordUK
| | - John E. Lunn
- Max Planck Institute of Molecular Plant PhysiologyPotsdam‐GolmGermany
| | - Mark Stitt
- Max Planck Institute of Molecular Plant PhysiologyPotsdam‐GolmGermany
| | - Susanne von Caemmerer
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonACTAustralia
| | - Robert T. Furbank
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonACTAustralia
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11
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Saito A, Shinjo S, Ito D, Doi Y, Sato A, Wakabayashi Y, Honda J, Arai Y, Maeda T, Ohyama T, Higuchi K. Enhancement of Photosynthetic Iron-Use Efficiency Is an Important Trait of Hordeum vulgare for Adaptation of Photosystems to Iron Deficiency. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10020234. [PMID: 33504088 PMCID: PMC7911540 DOI: 10.3390/plants10020234] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Revised: 01/12/2021] [Accepted: 01/18/2021] [Indexed: 05/28/2023]
Abstract
Leaf iron (Fe) contents in Fe-deficiency-tolerant plants are not necessarily higher than that in Fe-deficiency-susceptible ones, suggesting an unknown mechanism involved in saving and allowing the efficient use of minimal Fe. To quantitatively evaluate the difference in Fe economy for photosynthesis, we compared the ratio of CO2 assimilation rate to Fe content in newly developed leaves as a novel index of photosynthetic iron-use efficiency (PIUE) among 23 different barley (Hordeum vulgare L.) varieties. Notably, varieties originating from areas with alkaline soil increased PIUE in response to Fe-deficiency, suggesting that PIUE enhancement is a crucial and genetically inherent trait for acclimation to Fe-deficient environments. Multivariate analyses revealed that the ability to increase PIUE was correlated with photochemical quenching (qP), which is a coefficient of light energy used in photosynthesis. Nevertheless, the maximal quantum yield of photosystem II (PSII) photochemistry, non-photochemical quenching, and quantum yield of carbon assimilation showed a relatively low correlation with PIUE. This result suggests that the ability of Fe-deficiency-tolerant varieties of barley to increase PIUE is related to optimizing the electron flow downstream of PSII, including cytochrome b6f and photosystem I.
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12
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Dehigaspitiya P, Milham P, Ash GJ, Arun-Chinnappa K, Gamage D, Martin A, Nagasaka S, Seneweera S. Exploring natural variation of photosynthesis in a site-specific manner: evolution, progress, and prospects. PLANTA 2019; 250:1033-1050. [PMID: 31254100 DOI: 10.1007/s00425-019-03223-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Accepted: 06/20/2019] [Indexed: 06/09/2023]
Abstract
Site-specific changes of photosynthesis, a relatively new concept, can be used to improve the productivity of critical food crops to mitigate the foreseen food crisis. Global food security is threatened by an increasing population and the effects of climate change. Large yield improvements were achieved in major cereal crops between the 1950s and 1980s through the Green Revolution. However, we are currently experiencing a significant decline in yield progress. Of the many approaches to improved cereal yields, exploitation of the mode of photosynthesis has been intensely studied. Even though the C4 pathway is considered the most efficient, mainly because of the carbon concentrating mechanisms around the enzyme ribulose-1,5-bisphosphate carboxylase/oxygenase, which minimize photorespiration, much is still unknown about the specific gene regulation of this mode of photosynthesis. Most of the critical cereal crops, including wheat and rice, are categorized as C3 plants based on the photosynthesis of major photosynthetic organs. However, recent findings raise the possibility of different modes of photosynthesis occurring at different sites in the same plant and/or in plants grown in different habitats. That is, it seems possible that efficient photosynthetic traits may be expressed in specific organs, even though the major photosynthetic pathway is C3. Knowledge of site-specific differences in photosynthesis, coupled with site-specific regulation of gene expression, may therefore hold a potential to enhance the yields of economically important C3 crops.
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Affiliation(s)
| | - Paul Milham
- Hawkesbury Institute for the Environment, Western Sydney University, LB 1797, Penrith, NSW, 2753, Australia
| | - Gavin J Ash
- Centre for Crop Health, University of Southern Queensland, Toowoomba, QLD, 4350, Australia
| | - Kiruba Arun-Chinnappa
- Centre for Crop Health, University of Southern Queensland, Toowoomba, QLD, 4350, Australia
| | - Dananjali Gamage
- Centre for Crop Health, University of Southern Queensland, Toowoomba, QLD, 4350, Australia
| | - Anke Martin
- Centre for Crop Health, University of Southern Queensland, Toowoomba, QLD, 4350, Australia
| | - Seiji Nagasaka
- Centre for Crop Health, University of Southern Queensland, Toowoomba, QLD, 4350, Australia
| | - Saman Seneweera
- Centre for Crop Health, University of Southern Queensland, Toowoomba, QLD, 4350, Australia.
- National Institute of Fundamental Studies, Hanthana Road, Kandy, 20000, Central, Sri Lanka.
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13
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Hernández-Prieto MA, Foster C, Watson-Lazowski A, Ghannoum O, Chen M. Comparative analysis of thylakoid protein complexes in the mesophyll and bundle sheath cells from C 3 , C 4 and C 3 -C 4 Paniceae grasses. PHYSIOLOGIA PLANTARUM 2019; 166:134-147. [PMID: 30838662 DOI: 10.1111/ppl.12956] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2019] [Accepted: 03/01/2019] [Indexed: 06/09/2023]
Abstract
To better understand the coordination between dark and light reactions during the transition from C3 to C4 photosynthesis, we optimized a method for separating thylakoids from mesophyll (MC) and bundle sheath cells (BSCs) across different plant species. We grew six Paniceae grasses including representatives from the C3 , C3 -C4 and C4 photosynthetic types and all three C4 biochemical subtypes [nicotinamide adenine dinucleotide phosphate-dependent malic enzyme (NADP-ME), nicotinamide adenine dinucleotide-dependent malic enzyme (NAD-ME) and phosphoenolpyruvate carboxykinase (PEPCK)] in addition to Zea mays under control conditions (1000 μmol quanta m-2 s-1 and 400 ppm of CO2 ). Proteomics analysis of thylakoids under native conditions, using blue native polyacrylamide gel electrophoresis followed by liquid chromatography-mass spectrometry (LC-MS), demonstrated the presence of subunits of all light-reaction-related complexes in all species and cell types. C4 NADP-ME species showed a higher photosystems I/II ratio and a clear accumulation of the NADH dehydrogenase-like complexes in BSCs, while Cytb6 f was more abundant in BSCs of C4 NAD-ME species. The C4 PEPCK species showed no clear differences between cell types. Our study presents, for the first time, a good separation between BSC and MC for a C3 -C4 intermediate grass which did not show noticeable differences in the distribution of the thylakoid complexes. For the NADP-ME species Panicum antidotale, growth at glacial CO2 (180 ppm of CO2 ) had no effect on the distribution of the light-reaction complexes, while growth at low light (200 μmol quanta m-2 s-1 ) promoted the accumulation of light-harvesting proteins in both cell types. These results add to our understanding of thylakoid distribution across photosynthetic types and subtypes, and introduce thylakoid distribution between the MC and BSC of a C3 -C4 intermediate species.
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Affiliation(s)
- Miguel A Hernández-Prieto
- ARC Centre of Excellence for Translational Photosynthesis, School of Life and Environmental Sciences, The University of Sydney, Sydney, 2006, Australia
| | - Christie Foster
- ARC Centre of Excellence for Translational Photosynthesis, Hawkesbury Institute for the Environment, Western Sydney University, Sydney, 2751, Australia
| | - Alexander Watson-Lazowski
- ARC Centre of Excellence for Translational Photosynthesis, Hawkesbury Institute for the Environment, Western Sydney University, Sydney, 2751, Australia
| | - Oula Ghannoum
- ARC Centre of Excellence for Translational Photosynthesis, Hawkesbury Institute for the Environment, Western Sydney University, Sydney, 2751, Australia
| | - Min Chen
- ARC Centre of Excellence for Translational Photosynthesis, School of Life and Environmental Sciences, The University of Sydney, Sydney, 2006, Australia
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14
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Guo Y, Song Y, Zheng H, Zhang Y, Guo J, Sui N. NADP-Malate Dehydrogenase of Sweet Sorghum Improves Salt Tolerance of Arabidopsis thaliana. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2018; 66:5992-6002. [PMID: 29847118 DOI: 10.1021/acs.jafc.8b02159] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Sweet sorghum is a C4 crop that shows high salt tolerance and high yield. NADP-malate dehydrogenase ( NADP-ME) is a crucial enzyme of the C4 pathway. The regulatory mechanism of NADP-ME remains unclear. In this study, we isolated SbNADP-ME from sweet sorghum. The open reading frame of SbNADP-ME is 1911 bp and 637 amino acid residues. Quantitative real-time PCR analysis showed that SbNADP-ME transcription in sweet sorghum was enhanced by salt stress. The SbNADP-ME transcript level was highest under exposure to 150 mM NaCl. Arabidopsis overexpressing SbNADP-ME showed increased germination rate and root length under NaCl treatments. At the seedling stage, physiological photosynthesis parameters, chlorophyll content, PSII photochemical efficiency, and PSI oxidoreductive activity in the wild type decreased more severely than in the overexpression lines but less than in T-DNA insertion mutants under salt stress. Overexpression of SbNADP-ME in Arabidopsis may also increase osmotic adjustment and scavenging activity on DPPH and decrease membrane peroxidation. These results suggest that SbNADP-ME overexpression in Arabidopsis increases salt tolerance and alleviates PSII and PSI photoinhibition under salt stress by improving photosynthetic capacity.
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Affiliation(s)
- Yuanyuan Guo
- Shandong Provincial Key Laboratory of Plant Stress, College of Life Science , Shandong Normal University , Jinan 250014 , China
| | - Yushuang Song
- Shandong Provincial Key Laboratory of Plant Stress, College of Life Science , Shandong Normal University , Jinan 250014 , China
| | - Hongxiang Zheng
- Shandong Provincial Key Laboratory of Plant Stress, College of Life Science , Shandong Normal University , Jinan 250014 , China
| | - Yi Zhang
- Shandong Provincial Key Laboratory of Plant Stress, College of Life Science , Shandong Normal University , Jinan 250014 , China
| | - Jianrong Guo
- Shandong Provincial Key Laboratory of Plant Stress, College of Life Science , Shandong Normal University , Jinan 250014 , China
| | - Na Sui
- Shandong Provincial Key Laboratory of Plant Stress, College of Life Science , Shandong Normal University , Jinan 250014 , China
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15
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Yin X, Struik PC. The energy budget in C 4 photosynthesis: insights from a cell-type-specific electron transport model. THE NEW PHYTOLOGIST 2018; 218:986-998. [PMID: 29520959 PMCID: PMC5947737 DOI: 10.1111/nph.15051] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2017] [Accepted: 01/16/2018] [Indexed: 05/18/2023]
Abstract
Extra ATP required in C4 photosynthesis for the CO2 -concentrating mechanism probably comes from cyclic electron transport (CET). As metabolic ATP : NADPH requirements in mesophyll (M) and bundle-sheath (BS) cells differ among C4 subtypes, the subtypes may differ in the extent to which CET operates in these cells. We present an analytical model for cell-type-specific CET and linear electron transport. Modelled NADPH and ATP production were compared with requirements. For malic-enzyme (ME) subtypes, c. 50% of electron flux is CET, occurring predominantly in BS cells for standard NADP-ME species, but in a ratio of c. 6 : 4 in BS : M cells for NAD-ME species. Some C4 acids follow a secondary decarboxylation route, which is obligatory, in the form of 'aspartate-malate', for the NADP-ME subtype, but facultative, in the form of phosphoenolpyruvate-carboxykinase (PEP-CK), for the NAD-ME subtype. The percentage for secondary decarboxylation is c. 25% and that for 3-phosphoglycerate reduction in BS cells is c. 40%; but these values vary with species. The 'pure' PEP-CK type is unrealistic because its is impossible to fulfil ATP : NADPH requirements in BS cells. The standard PEP-CK subtype requires negligible CET, and thus has the highest intrinsic quantum yields and deserves further studies in the context of improving canopy productivity.
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Affiliation(s)
- Xinyou Yin
- Department of Plant SciencesCentre for Crop Systems AnalysisWageningen University & ResearchPO Box 4306700 AKWageningenthe Netherlands
| | - Paul C. Struik
- Department of Plant SciencesCentre for Crop Systems AnalysisWageningen University & ResearchPO Box 4306700 AKWageningenthe Netherlands
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16
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Takagi D, Ishizaki K, Hanawa H, Mabuchi T, Shimakawa G, Yamamoto H, Miyake C. Diversity of strategies for escaping reactive oxygen species production within photosystem I among land plants: P700 oxidation system is prerequisite for alleviating photoinhibition in photosystem I. PHYSIOLOGIA PLANTARUM 2017; 161:56-74. [PMID: 28295410 DOI: 10.1111/ppl.12562] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2016] [Revised: 12/28/2016] [Accepted: 02/07/2017] [Indexed: 05/24/2023]
Abstract
In land plants, photosystem I (PSI) photoinhibition limits carbon fixation and causes growth defects. In addition, recovery from PSI photoinhibition takes much longer than PSII photoinhibition when the PSI core-complex is degraded by oxidative damage. Accordingly, PSI photoinhibition should be avoided in land plants, and land plants should have evolved mechanisms to prevent PSI photoinhibition. However, such protection mechanisms have not yet been identified, and it remains unclear whether all land plants suffer from PSI photoinhibition in the same way. In the present study, we focused on the susceptibility of PSI to photoinhibition and investigated whether mechanisms of preventing PSI photoinhibition varied among land plant species. To assess the susceptibility of PSI to photoinhibition, we used repetitive short-pulse (rSP) illumination, which specifically induces PSI photoinhibition. Subsequently, we found that land plants possess a wide variety of tolerance mechanisms against PSI photoinhibition. In particular, gymnosperms, ferns and mosses/liverworts exhibited higher tolerance to rSP illumination-induced PSI photoinhibition than angiosperms, and detailed analyses indicated that the tolerance of these groups could be partly attributed to flavodiiron proteins, which protected PSI from photoinhibition by oxidizing the PSI reaction center chlorophyll (P700) as an electron acceptor. Furthermore, we demonstrate, for the first time, that gymnosperms, ferns and mosses/liverworts possess a protection mechanism against photoinhibition of PSI that differs from that of angiosperms.
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Affiliation(s)
- Daisuke Takagi
- Department of Biological and Environmental Science, Faculty of Agriculture, Graduate School of Agricultural Science, Kobe University, Nada, 657-8501, Japan
- Core Research for Environmental Science and Technology, Japan Science and Technology Agency, Tokyo, 102-0076, Japan
| | | | - Hitomi Hanawa
- Department of Biological and Environmental Science, Faculty of Agriculture, Graduate School of Agricultural Science, Kobe University, Nada, 657-8501, Japan
- Core Research for Environmental Science and Technology, Japan Science and Technology Agency, Tokyo, 102-0076, Japan
| | - Tomohito Mabuchi
- Department of Biological and Environmental Science, Faculty of Agriculture, Graduate School of Agricultural Science, Kobe University, Nada, 657-8501, Japan
| | - Ginga Shimakawa
- Department of Biological and Environmental Science, Faculty of Agriculture, Graduate School of Agricultural Science, Kobe University, Nada, 657-8501, Japan
| | - Hiroshi Yamamoto
- Department of Botany, Graduate School of Science, Kyoto University, Kyoto, 606-8502, Japan
| | - Chikahiro Miyake
- Department of Biological and Environmental Science, Faculty of Agriculture, Graduate School of Agricultural Science, Kobe University, Nada, 657-8501, Japan
- Core Research for Environmental Science and Technology, Japan Science and Technology Agency, Tokyo, 102-0076, Japan
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17
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Heckmann D, Schlüter U, Weber APM. Machine Learning Techniques for Predicting Crop Photosynthetic Capacity from Leaf Reflectance Spectra. MOLECULAR PLANT 2017; 10:878-890. [PMID: 28461269 DOI: 10.1016/j.molp.2017.04.009] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Revised: 03/21/2017] [Accepted: 04/23/2017] [Indexed: 05/05/2023]
Abstract
Harnessing natural variation in photosynthetic capacity is a promising route toward yield increases, but physiological phenotyping is still too laborious for large-scale genetic screens. Here, we evaluate the potential of leaf reflectance spectroscopy to predict parameters of photosynthetic capacity in Brassica oleracea and Zea mays, a C3 and a C4 crop, respectively. To this end, we systematically evaluated properties of reflectance spectra and found that they are surprisingly similar over a wide range of species. We assessed the performance of a wide range of machine learning methods and selected recursive feature elimination on untransformed spectra followed by partial least squares regression as the preferred algorithm that yielded the highest predictive power. Learning curves of this algorithm suggest optimal species-specific sample sizes. Using the Brassica relative Moricandia, we evaluated the model transferability between species and found that cross-species performance cannot be predicted from phylogenetic proximity. The final intra-species models predict crop photosynthetic capacity with high accuracy. Based on the estimated model accuracy, we simulated the use of the models in selective breeding experiments, and showed that high-throughput photosynthetic phenotyping using our method has the potential to greatly improve breeding success. Our results indicate that leaf reflectance phenotyping is an efficient method for improving crop photosynthetic capacity.
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Affiliation(s)
- David Heckmann
- Heinrich-Heine-Universität, Institute for Computer Science, 40225 Düsseldorf, Germany.
| | - Urte Schlüter
- Heinrich-Heine-Universität, Institute of Plant Biochemistry, 40225 Düsseldorf, Germany
| | - Andreas P M Weber
- Heinrich-Heine-Universität, Institute of Plant Biochemistry, 40225 Düsseldorf, Germany; Cluster of Excellence on Plant Sciences (CEPLAS) "From Complex Traits towards Synthetic Modules", 40225 Düsseldorf, Germany
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18
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Dueñas ME, Klein AT, Alexander LE, Yandeau-Nelson MD, Nikolau BJ, Lee YJ. High spatial resolution mass spectrometry imaging reveals the genetically programmed, developmental modification of the distribution of thylakoid membrane lipids among individual cells of maize leaf. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017; 89:825-838. [PMID: 27859865 DOI: 10.1111/tpj.13422] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2016] [Accepted: 11/04/2016] [Indexed: 05/13/2023]
Abstract
Metabolism in plants is compartmentalized among different tissues, cells and subcellular organelles. Mass spectrometry imaging (MSI) with matrix-assisted laser desorption ionization (MALDI) has recently advanced to allow for the visualization of metabolites at single-cell resolution. Here we applied 5- and 10 μm high spatial resolution MALDI-MSI to the asymmetric Kranz anatomy of Zea mays (maize) leaves to study the differential localization of two major anionic lipids in thylakoid membranes, sulfoquinovosyldiacylglycerols (SQDG) and phosphatidylglycerols (PG). The quantification and localization of SQDG and PG molecular species, among mesophyll (M) and bundle sheath (BS) cells, are compared across the leaf developmental gradient from four maize genotypes (the inbreds B73 and Mo17, and the reciprocal hybrids B73 × Mo17 and Mo17 × B73). SQDG species are uniformly distributed in both photosynthetic cell types, regardless of leaf development or genotype; however, PG shows photosynthetic cell-specific differential localization depending on the genotype and the fatty acyl chain constituent. Overall, 16:1-containing PGs primarily contribute to the thylakoid membranes of M cells, whereas BS chloroplasts are mostly composed of 16:0-containing PGs. Furthermore, PG 32:0 shows genotype-specific differences in cellular distribution, with preferential localization in BS cells for B73, but more uniform distribution between BS and M cells in Mo17. Maternal inheritance is exhibited within the hybrids, such that the localization of PG 32:0 in B73 × Mo17 is similar to the distribution in the B73 parental inbred, whereas that of Mo17 × B73 resembles the Mo17 parent. This study demonstrates the power of MALDI-MSI to reveal unprecedented insights on metabolic outcomes in multicellular organisms at single-cell resolution.
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Affiliation(s)
- Maria Emilia Dueñas
- Department of Chemistry, Iowa State University, Ames, IA, 50011, USA
- Ames Laboratory-US DOE, Ames, IA, 50011, USA
| | - Adam T Klein
- Department of Chemistry, Iowa State University, Ames, IA, 50011, USA
- Ames Laboratory-US DOE, Ames, IA, 50011, USA
| | - Liza E Alexander
- Ames Laboratory-US DOE, Ames, IA, 50011, USA
- Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA, 50011, USA
- Center for Metabolic Biology, Iowa State University, Ames, IA, 50011, USA
| | - Marna D Yandeau-Nelson
- Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA
- Center for Metabolic Biology, Iowa State University, Ames, IA, 50011, USA
| | - Basil J Nikolau
- Ames Laboratory-US DOE, Ames, IA, 50011, USA
- Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA, 50011, USA
- Center for Metabolic Biology, Iowa State University, Ames, IA, 50011, USA
| | - Young Jin Lee
- Department of Chemistry, Iowa State University, Ames, IA, 50011, USA
- Ames Laboratory-US DOE, Ames, IA, 50011, USA
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19
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Huang P, Studer AJ, Schnable JC, Kellogg EA, Brutnell TP. Cross species selection scans identify components of C4 photosynthesis in the grasses. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:127-135. [PMID: 27436281 PMCID: PMC5429014 DOI: 10.1093/jxb/erw256] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
C4 photosynthesis is perhaps one of the best examples of convergent adaptive evolution with over 25 independent origins in the grasses (Poaceae) alone. The availability of high quality grass genome sequences presents new opportunities to explore the mechanisms underlying this complex trait using evolutionary biology-based approaches. In this study, we performed genome-wide cross-species selection scans in C4 lineages to facilitate discovery of C4 genes. The study was enabled by the well conserved collinearity of grass genomes and the recently sequenced genome of a C3 panicoid grass, Dichanthelium oligosanthes This method, in contrast to previous studies, does not rely on any a priori knowledge of the genes that contribute to biochemical or anatomical innovations associated with C4 photosynthesis. We identified a list of 88 candidate genes that include both known and potentially novel components of the C4 pathway. This set includes the carbon shuttle enzymes pyruvate, phosphate dikinase, phosphoenolpyruvate carboxylase and NADP malic enzyme as well as several predicted transporter proteins that likely play an essential role in promoting the flux of metabolites between the bundle sheath and mesophyll cells. Importantly, this approach demonstrates the application of fundamental molecular evolution principles to dissect the genetic basis of a complex photosynthetic adaptation in plants. Furthermore, we demonstrate how the output of the selection scans can be combined with expression data to provide additional power to prioritize candidate gene lists and suggest novel opportunities for pathway engineering.
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Affiliation(s)
- Pu Huang
- Donald Danforth Plant Science Center, 975 N Warson Rd, St Louis, MO 63132, USA
| | - Anthony J Studer
- Department of Crop Sciences, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA
| | - James C Schnable
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68588, USA
| | - Elizabeth A Kellogg
- Donald Danforth Plant Science Center, 975 N Warson Rd, St Louis, MO 63132, USA
| | - Thomas P Brutnell
- Donald Danforth Plant Science Center, 975 N Warson Rd, St Louis, MO 63132, USA
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20
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Bellasio C. A generalized stoichiometric model of C3, C2, C2+C4, and C4 photosynthetic metabolism. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:269-282. [PMID: 27535993 PMCID: PMC5853385 DOI: 10.1093/jxb/erw303] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2016] [Accepted: 07/21/2016] [Indexed: 05/22/2023]
Abstract
The goal of suppressing photorespiration in crops to maximize assimilation and yield is stimulating considerable interest among researchers looking to bioengineer carbon-concentrating mechanisms into C3 plants. However, detailed quantification of the biochemical activities in the bundle sheath is lacking. This work presents a general stoichiometric model for C3, C2, C2+C4, and C4 assimilation (SMA) in which energetics, metabolite traffic, and the different decarboxylating enzymes (NAD-dependent malic enzyme, NADP-dependent malic enzyme, or phosphoenolpyruvate carboxykinase) are explicitly included. The SMA can be used to refine experimental data analysis or formulate hypothetical scenarios, and is coded in a freely available Microsoft Excel workbook. The theoretical underpinnings and general model behaviour are analysed with a range of simulations, including (i) an analysis of C3, C2, C2+C4, and C4 in operational conditions; (ii) manipulating photorespiration in a C3 plant; (iii) progressively upregulating a C2 shuttle in C3 photosynthesis; (iv) progressively upregulating a C4 cycle in C2 photosynthesis; and (v) manipulating processes that are hypothesized to respond to transient environmental inputs. Results quantify the functional trade-offs, such as the electron transport needed to meet ATP/NADPH demand, as well as metabolite traffic, inherent to different subtypes. The SMA refines our understanding of the stoichiometry of photosynthesis, which is of paramount importance for basic and applied research.
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Affiliation(s)
- Chandra Bellasio
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK
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21
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Lauterbach M, Billakurthi K, Kadereit G, Ludwig M, Westhoff P, Gowik U. C3 cotyledons are followed by C4 leaves: intra-individual transcriptome analysis of Salsola soda (Chenopodiaceae). JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:161-176. [PMID: 27660482 PMCID: PMC5853821 DOI: 10.1093/jxb/erw343] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Some species of Salsoleae (Chenopodiaceae) convert from C3 photosynthesis during the seedling stage to the C4 pathway in adult leaves. This unique developmental transition of photosynthetic pathways offers the exceptional opportunity to follow the development of the derived C4 syndrome from the C3 condition within individual plants, avoiding phylogenetic noise. Here we investigate Salsola soda, a little-studied species from tribe Salsoleae, using an ontogenetic approach. Anatomical sections, carbon isotope (δ13C) values, transcriptome analysis by means of mRNA sequencing, and protein levels of the key C4 enzyme phosphoenolpyruvate carboxylase (PEPC) were examined from seed to adult plant stages. Despite a previous report, our results based on δ13C values, anatomy and transcriptomics clearly indicate a C3 phase during the cotyledon stage. During this stage, the entire transcriptional repertoire of the C4 NADP-malic enzyme type is detected at low levels compared to a significant increase in true leaves. In contrast, abundance of transcripts encoding most of the major photorespiratory enzymes is not significantly decreased in leaves compared to cotyledons. PEPC polypeptide was detected only in leaves, correlating with increased PEPC transcript abundance from the cotyledon to leaf stage.
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Affiliation(s)
- Maximilian Lauterbach
- Institut für Allgemeine und Spezielle Botanik und Botanischer Garten der Johannes Gutenberg-Universität Mainz, D-55099 Mainz, Germany
| | - Kumari Billakurthi
- Institut für Entwicklungs- und Molekularbiologie der Pflanzen, D-40225 Düsseldorf, Germany
- Cluster of Excellence on Plant Sciences (CEPLAS), D-06225 Düsseldorf, Germany
| | - Gudrun Kadereit
- Institut für Allgemeine und Spezielle Botanik und Botanischer Garten der Johannes Gutenberg-Universität Mainz, D-55099 Mainz, Germany
| | - Martha Ludwig
- School of Chemistry and Biochemistry, University of Western Australia, Crawley, WA 6009, Australia
| | - Peter Westhoff
- Institut für Entwicklungs- und Molekularbiologie der Pflanzen, D-40225 Düsseldorf, Germany
- Cluster of Excellence on Plant Sciences (CEPLAS), D-06225 Düsseldorf, Germany
| | - Udo Gowik
- Institut für Entwicklungs- und Molekularbiologie der Pflanzen, D-40225 Düsseldorf, Germany
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22
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Shen W, Ye L, Ma J, Yuan Z, Zheng B, Lv C, Zhu Z, Chen X, Gao Z, Chen G. The existence of C4-bundle-sheath-like photosynthesis in the mid-vein of C3 rice. RICE (NEW YORK, N.Y.) 2016; 9:20. [PMID: 27164981 PMCID: PMC4864733 DOI: 10.1186/s12284-016-0094-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2015] [Accepted: 04/30/2016] [Indexed: 05/12/2023]
Abstract
BACKGROUND Recent studies have shown that C4-like photosynthetic pathways partly reside in photosynthetic cells surrounding the vascular system of C3 dicots. However, it is still unclear whether this is the case in C3 monocots, especially at the molecular level. RESULTS In order to fill this gap, we investigated several characteristics required for C4 photosynthesis, including C4 pathway enzymes, cyclic/non-cyclic photophosphorylation rates, the levels and assembly state of photosynthetic machineries, in the mid-veins of C3 monocots rice with leaf laminae used as controls. The signature of photosystem photochemistry was also recorded via non-invasive chlorophyll a fluorescence and reflectance changes at 820 nm in vivo. Our results showed that rice mid-veins were photosynthetically active with higher levels of three C4 decarboxylases. Meanwhile, the linear electron transport chain was blocked in mid-veins due to the selective loss of dysfunctional photosystem II subunits. However, photosystem I was sufficient to support cyclic electron flow in mid-veins, reminiscent of the bundle sheath in C4 plants. CONCLUSIONS The photosynthetic attributes required for C4 photosynthesis were identified for the first time in the monocotyledon model crop rice, suggesting that this is likely a general innate characteristic of C3 plants which might be preconditioned for the C4 pathway evolution. Understanding these attributes would provide a base for improved strategies for engineering C4 photosynthetic pathways into rice.
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Affiliation(s)
- Weijun Shen
- College of Life Sciences, Nanjing Normal University, 1 Wenyuan Road, Nanjing, 210023, China
| | - Luhuan Ye
- College of Life Sciences, Nanjing Normal University, 1 Wenyuan Road, Nanjing, 210023, China
| | - Jing Ma
- College of Life Sciences, Nanjing Normal University, 1 Wenyuan Road, Nanjing, 210023, China
| | - Zhongyuan Yuan
- College of Life Sciences, Nanjing Normal University, 1 Wenyuan Road, Nanjing, 210023, China
| | - Baogang Zheng
- College of Life Sciences, Nanjing Normal University, 1 Wenyuan Road, Nanjing, 210023, China
| | - Chuangen Lv
- Institute of Food and Crops, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing, 210014, China
| | - Ziqiang Zhu
- College of Life Sciences, Nanjing Normal University, 1 Wenyuan Road, Nanjing, 210023, China
| | - Xiang Chen
- University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Zhiping Gao
- College of Life Sciences, Nanjing Normal University, 1 Wenyuan Road, Nanjing, 210023, China.
| | - Guoxiang Chen
- College of Life Sciences, Nanjing Normal University, 1 Wenyuan Road, Nanjing, 210023, China.
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23
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Bellasio C, Lundgren MR. Anatomical constraints to C4 evolution: light harvesting capacity in the bundle sheath. THE NEW PHYTOLOGIST 2016; 212:485-496. [PMID: 27375085 DOI: 10.1111/nph.14063] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2016] [Accepted: 05/10/2016] [Indexed: 06/06/2023]
Abstract
In C4 photosynthesis CO2 assimilation and reduction are typically coordinated across mesophyll (M) and bundle sheath (BS) cells, respectively. This system consequently requires sufficient light to reach BS to generate enough ATP to allow ribulose-1,5-bisphosphate (RuBP) regeneration in BS. Leaf anatomy influences BS light penetration and therefore constrains C4 cycle functionality. Using an absorption scattering model (coded in Excel, and freely downloadable) we simulate light penetration profiles and rates of ATP production in BS across the C3 , C3 -C4 and C4 anatomical continua. We present a trade-off for light absorption between BS pigment concentration and space allocation. C3 BS anatomy limits light absorption and benefits little from high pigment concentrations. Unpigmented BS extensions increase BS light penetration. C4 and C3 -C4 anatomies have the potential to generate sufficient ATP in the BS, whereas typical C3 anatomy does not, except some C3 taxa closely related to C4 groups. Insufficient volume of BS, relative to M, will hamper a C4 cycle via insufficient BS light absorption. Thus, BS ATP production and RuBP regeneration, coupled with increased BS investments, allow greater operational plasticity. We propose that larger BS in C3 lineages may be co-opted for C3 -C4 and C4 biochemistry requirements.
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Affiliation(s)
- Chandra Bellasio
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK.
| | - Marjorie R Lundgren
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK
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Schlüter U, Denton AK, Bräutigam A. Understanding metabolite transport and metabolism in C4 plants through RNA-seq. CURRENT OPINION IN PLANT BIOLOGY 2016; 31:83-90. [PMID: 27082280 DOI: 10.1016/j.pbi.2016.03.007] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2015] [Revised: 03/09/2016] [Accepted: 03/10/2016] [Indexed: 06/05/2023]
Abstract
RNA-seq, the measurement of steady-state RNA levels by next generation sequencing, has enabled quantitative transcriptome analyses of complex traits in many species without requiring the parallel sequencing of their genomes. The complex trait of C4 photosynthesis, which increases photosynthetic efficiency via a biochemical pump that concentrates CO2 around RubisCO, has evolved convergently multiple times. Due to these interesting properties, C4 photosynthesis has been analyzed in a series of comparative RNA-seq projects. These projects compared both species with and without the C4 trait and different tissues or organs within a C4 plant. The RNA-seq studies were evaluated by comparing to earlier single gene studies. The studies confirmed the marked changes expected for C4 signature genes, but also revealed numerous new players in C4 metabolism showing that the C4 cycle is more complex than previously thought, and suggesting modes of integration into the underlying C3 metabolism.
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Affiliation(s)
- Urte Schlüter
- Institute of Plant Biochemistry and Cluster of Excellence on Plant Science (CEPLAS), Heinrich-Heine-University, Universitätsstrasse 1, D-40225 Düsseldorf, Germany
| | - Alisandra K Denton
- Institute for Biology I, RWTH Aachen University, Worringer Weg 3, 52074 Aachen, Germany
| | - Andrea Bräutigam
- Institute of Plant Biochemistry and Cluster of Excellence on Plant Science (CEPLAS), Heinrich-Heine-University, Universitätsstrasse 1, D-40225 Düsseldorf, Germany.
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25
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Furumoto T. Pyruvate transport systems in organelles: future directions in C4 biology research. CURRENT OPINION IN PLANT BIOLOGY 2016; 31:143-8. [PMID: 27153467 DOI: 10.1016/j.pbi.2016.04.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2016] [Revised: 03/27/2016] [Accepted: 04/14/2016] [Indexed: 05/25/2023]
Abstract
Pyruvate is a central metabolite that must be imported into organelles for specific metabolic processes, including C4 photosynthesis. Plastidial and mitochondrial pyruvate transporter molecules were recently identified: the former was found based on C4 photosynthesis transcriptome analysis and the latter using a bioinformatics approach in yeast. The transport activities of these molecules were recently investigated in heterologous expression systems: Escherichia coli and Lactococcus lactis, respectively. These studies demonstrated the important roles of the NHD1/Bass2-protein coupling function and the mitochondria pyruvate carrier protein complex in pyruvate uptake. Here, I summarize the approaches used to isolate these proteins and the issues that remain to be investigated.
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Affiliation(s)
- Tsuyoshi Furumoto
- Faculty of Agriculture, Ryukoku University, 1-5, Yokotani, Oe-cho, Seta, Otsu, Shiga 520-2194, Japan.
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26
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Iermak I, Vink J, Bader AN, Wientjes E, van Amerongen H. Visualizing heterogeneity of photosynthetic properties of plant leaves with two-photon fluorescence lifetime imaging microscopy. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2016; 1857:1473-1478. [PMID: 27239747 DOI: 10.1016/j.bbabio.2016.05.005] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2016] [Revised: 05/09/2016] [Accepted: 05/21/2016] [Indexed: 01/09/2023]
Abstract
Two-photon fluorescence lifetime imaging microscopy (FLIM) was used to analyse the distribution and properties of Photosystem I (PSI) and Photosystem II (PSII) in palisade and spongy chloroplasts of leaves from the C3 plant Arabidopsis thaliana and the C4 plant Miscanthus x giganteus. This was achieved by separating the time-resolved fluorescence of PSI and PSII in the leaf. It is found that the PSII antenna size is larger on the abaxial side of A. thaliana leaves, presumably because chloroplasts in the spongy mesophyll are "shaded" by the palisade cells. The number of chlorophylls in PSI on the adaxial side of the A. thaliana leaf is slightly higher. The C4 plant M. x giganteus contains both mesophyll and bundle sheath cells, which have a different PSI/PSII ratio. It is shown that the time-resolved fluorescence of bundle sheath and mesophyll cells can be analysed separately. The relative number of chlorophylls, which belong to PSI (as compared to PSII) in the bundle sheath cells is at least 2.5 times higher than in mesophyll cells. FLIM is thus demonstrated to be a useful technique to study the PSI/PSII ratio and PSII antenna size in well-defined regions of plant leaves without having to isolate pigment-protein complexes.
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Affiliation(s)
- Ievgeniia Iermak
- Laboratory of Biophysics, Wageningen University, P.O. Box 8128, 6700 ET Wageningen, The Netherlands; BioSolar Cells Project Office, P.O. Box 98, 6700 AB Wageningen, The Netherlands
| | - Jochem Vink
- Laboratory of Biophysics, Wageningen University, P.O. Box 8128, 6700 ET Wageningen, The Netherlands
| | - Arjen N Bader
- Laboratory of Biophysics, Wageningen University, P.O. Box 8128, 6700 ET Wageningen, The Netherlands; MicroSpectroscopy Centre, Wageningen University, P.O. Box 8128, 6700 ET Wageningen, The Netherlands
| | - Emilie Wientjes
- Laboratory of Biophysics, Wageningen University, P.O. Box 8128, 6700 ET Wageningen, The Netherlands
| | - Herbert van Amerongen
- Laboratory of Biophysics, Wageningen University, P.O. Box 8128, 6700 ET Wageningen, The Netherlands; BioSolar Cells Project Office, P.O. Box 98, 6700 AB Wageningen, The Netherlands; MicroSpectroscopy Centre, Wageningen University, P.O. Box 8128, 6700 ET Wageningen, The Netherlands
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27
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Tao Y, Lyu MJA, Zhu XG. Transcriptome comparisons shed light on the pre-condition and potential barrier for C4 photosynthesis evolution in eudicots. PLANT MOLECULAR BIOLOGY 2016; 91:193-209. [PMID: 26893123 DOI: 10.1007/s11103-016-0455-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2015] [Accepted: 02/14/2016] [Indexed: 06/05/2023]
Abstract
C4 photosynthesis evolved independently from C3 photosynthesis in more than 60 lineages. Most of the C4 lineages are clustered together in the order Poales and the order Caryophyllales while many other angiosperm orders do not have C4 species, suggesting the existence of biological pre-conditions in the ancestral C3 species that facilitate the evolution of C4 photosynthesis in these lineages. To explore pre-adaptations for C4 photosynthesis evolution, we classified C4 lineages into the C4-poor and the C4-rich groups based on the percentage of C4 species in different genera and conducted a comprehensive comparison on the transcriptomic changes between the non-C4 species from the C4-poor and the C4-rich groups. Results show that species in the C4-rich group showed higher expression of genes related to oxidoreductase activity, light reaction components, terpene synthesis, secondary cell synthesis, C4 cycle related genes and genes related to nucleotide metabolism and senescence. In contrast, C4-poor group showed up-regulation of a PEP/Pi translocator, genes related to signaling pathway, stress response, defense response and plant hormone metabolism (ethylene and brassinosteroid). The implications of these transcriptomic differences between the C4-rich and C4-poor groups to C4 evolution are discussed.
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Affiliation(s)
- Yimin Tao
- CAS-Key Laboratory for Computational Biology and State Key Laboratory for Hybrid Rice, Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Ming-Ju Amy Lyu
- CAS-Key Laboratory for Computational Biology and State Key Laboratory for Hybrid Rice, Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Xin-Guang Zhu
- CAS-Key Laboratory for Computational Biology and State Key Laboratory for Hybrid Rice, Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China.
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28
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Rao X, Lu N, Li G, Nakashima J, Tang Y, Dixon RA. Comparative cell-specific transcriptomics reveals differentiation of C4 photosynthesis pathways in switchgrass and other C4 lineages. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:1649-62. [PMID: 26896851 PMCID: PMC4783356 DOI: 10.1093/jxb/erv553] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Almost all C4 plants require the co-ordination of the adjacent and fully differentiated cell types, mesophyll (M) and bundle sheath (BS). The C4 photosynthetic pathway operates through two distinct subtypes based on how malate is decarboxylated in BS cells; through NAD-malic enzyme (NAD-ME) or NADP-malic enzyme (NADP-ME). The diverse or unique cell-specific molecular features of M and BS cells from separate C4 subtypes of independent lineages remain to be determined. We here provide an M/BS cell type-specific transcriptome data set from the monocot NAD-ME subtype switchgrass (Panicum virgatum). A comparative transcriptomics approach was then applied to compare the M/BS mRNA profiles of switchgrass, monocot NADP-ME subtype C4 plants maize and Setaria viridis, and dicot NAD-ME subtype Cleome gynandra. We evaluated the convergence in the transcript abundance of core components in C4 photosynthesis and transcription factors to establish Kranz anatomy, as well as gene distribution of biological functions, in these four independent C4 lineages. We also estimated the divergence between NAD-ME and NADP-ME subtypes of C4 photosynthesis in the two cell types within C4 species, including differences in genes encoding decarboxylating enzymes, aminotransferases, and metabolite transporters, and differences in the cell-specific functional enrichment of RNA regulation and protein biogenesis/homeostasis. We suggest that C4 plants of independent lineages in both monocots and dicots underwent convergent evolution to establish C4 photosynthesis, while distinct C4 subtypes also underwent divergent processes for the optimization of M and BS cell co-ordination. The comprehensive data sets in our study provide a basis for further research on evolution of C4 species.
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Affiliation(s)
- Xiaolan Rao
- Department of Biological Sciences, University of North Texas, 1155 Union Circle #305220, Denton, TX 76203, USA BioEnergy Science Center (BESC), US Department of Energy, Oak Ridge, TN 37831, USA
| | - Nan Lu
- Department of Biological Sciences, University of North Texas, 1155 Union Circle #305220, Denton, TX 76203, USA
| | - Guifen Li
- Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, OK 73401, USA
| | - Jin Nakashima
- Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, OK 73401, USA
| | - Yuhong Tang
- BioEnergy Science Center (BESC), US Department of Energy, Oak Ridge, TN 37831, USA Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, OK 73401, USA
| | - Richard A Dixon
- Department of Biological Sciences, University of North Texas, 1155 Union Circle #305220, Denton, TX 76203, USA BioEnergy Science Center (BESC), US Department of Energy, Oak Ridge, TN 37831, USA
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29
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Xing S, Kang L, Xu Q, Fan Y, Liu W, Zhu C, Song Z, Wang Q, Yan J, Li J, Sang T. The Coordination of Gene Expression within Photosynthesis Pathway for Acclimation of C4 Energy Crop Miscanthus lutarioriparius. FRONTIERS IN PLANT SCIENCE 2016; 7:109. [PMID: 26904072 PMCID: PMC4746358 DOI: 10.3389/fpls.2016.00109] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2015] [Accepted: 01/21/2016] [Indexed: 05/27/2023]
Abstract
As a promising candidate for the second-generation C4 energy crop, Miscanthus lutarioriparius has well acclimated to the water-limited and high-light Loess Plateau in China by improving photosynthesis rate and water use efficiency (WUE) compared to its native habitat along Yangtze River. Photosynthetic genes were demonstrated as one major category of the candidate genes underlying the physiological superiority. To further study how photosynthetic genes interact to improve the acclimation potential of M. lutarioriparius, population expression patterns within photosynthesis pathway were explored between one mild environment and one harsh environment. We found that 108 transcripts in assembled transcriptome of M. lutarioriparius were highly similar to genes in three Kyoto Encyclopedia of Genes and Genomes (KEGG) photosynthesis pathways of sorghum and maize. Phylogenetic analyses using sorghum, maize, rice, and Arabidopsis genes of dark reaction identified 23 orthologs and 30 paralogs of M. lutarioriparius photosynthetic genes. These genes were also clustered into two kinds of expression pattern. 87% of transcripts in dark reaction were up-regulated and all 14 chloroplast-encoded transcripts in light reaction increased degradation in the harsh environment compared to the mild environment. Moreover, 80.8% of photosynthetic transcripts were coordinated at transcription level under the two environments. Interestingly, LHCI and PSI were significantly correlated with F-ATPase and C4 cycle. Overall, this study indicates the coordinated expression between cyclic electron transport (consisting of LHCI, PSI, and ATPase) and CO2-concentrating mechanism (C4 cycle) could account for photosynthesis plasticity on M. lutarioriparius acclimation potential.
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Affiliation(s)
- Shilai Xing
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of SciencesBeijing, China
- University of Chinese Academy of SciencesBeijing, China
| | - Lifang Kang
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of SciencesBeijing, China
| | - Qin Xu
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of SciencesBeijing, China
| | - Yangyang Fan
- University of Chinese Academy of SciencesBeijing, China
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of SciencesBeijing, China
| | - Wei Liu
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of SciencesBeijing, China
| | - Caiyun Zhu
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of SciencesBeijing, China
- University of Chinese Academy of SciencesBeijing, China
| | - Zhihong Song
- University of Chinese Academy of SciencesBeijing, China
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of SciencesBeijing, China
| | - Qian Wang
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of SciencesBeijing, China
- University of Chinese Academy of SciencesBeijing, China
| | - Juan Yan
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of SciencesWuhan, China
| | - Jianqiang Li
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of SciencesWuhan, China
| | - Tao Sang
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of SciencesBeijing, China
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of SciencesBeijing, China
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30
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Suorsa M, Rossi F, Tadini L, Labs M, Colombo M, Jahns P, Kater MM, Leister D, Finazzi G, Aro EM, Barbato R, Pesaresi P. PGR5-PGRL1-Dependent Cyclic Electron Transport Modulates Linear Electron Transport Rate in Arabidopsis thaliana. MOLECULAR PLANT 2016; 9:271-288. [PMID: 26687812 DOI: 10.1016/j.molp.2015.12.001] [Citation(s) in RCA: 87] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2015] [Revised: 11/01/2015] [Accepted: 12/01/2015] [Indexed: 05/05/2023]
Abstract
Plants need tight regulation of photosynthetic electron transport for survival and growth under environmental and metabolic conditions. For this purpose, the linear electron transport (LET) pathway is supplemented by a number of alternative electron transfer pathways and valves. In Arabidopsis, cyclic electron transport (CET) around photosystem I (PSI), which recycles electrons from ferrodoxin to plastoquinone, is the most investigated alternative route. However, the interdependence of LET and CET and the relative importance of CET remain unclear, largely due to the difficulties in precise assessment of the contribution of CET in the presence of LET, which dominates electron flow under physiological conditions. We therefore generated Arabidopsis mutants with a minimal water-splitting activity, and thus a low rate of LET, by combining knockout mutations in PsbO1, PsbP2, PsbQ1, PsbQ2, and PsbR loci. The resulting Δ5 mutant is viable, although mature leaves contain only ∼ 20% of wild-type naturally less abundant PsbO2 protein. Δ5 plants compensate for the reduction in LET by increasing the rate of CET, and inducing a strong non-photochemical quenching (NPQ) response during dark-to-light transitions. To identify the molecular origin of such a high-capacity CET, we constructed three sextuple mutants lacking the qE component of NPQ (Δ5 npq4-1), NDH-mediated CET (Δ5 crr4-3), or PGR5-PGRL1-mediated CET (Δ5 pgr5). Their analysis revealed that PGR5-PGRL1-mediated CET plays a major role in ΔpH formation and induction of NPQ in C3 plants. Moreover, while pgr5 dies at the seedling stage under fluctuating light conditions, Δ5 pgr5 plants are able to survive, which underlines the importance of PGR5 in modulating the intersystem electron transfer.
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Affiliation(s)
- Marjaana Suorsa
- Molecular Plant Biology, Department of Biochemistry, University of Turku, 20014 Turku, Finland
| | - Fabio Rossi
- Dipartimento di Bioscienze, Università degli studi di Milano, 20133 Milano, Italy
| | - Luca Tadini
- Plant Molecular Biology (Botany), Department Biology I, Ludwig-Maximilians-Universität München, 82152 Planegg-Martinsried, Germany
| | - Mathias Labs
- Plant Molecular Biology (Botany), Department Biology I, Ludwig-Maximilians-Universität München, 82152 Planegg-Martinsried, Germany
| | - Monica Colombo
- Centro Ricerca e Innovazione, Fondazione Edmund Mach, 38010, San Michele all'Adige, Italy
| | - Peter Jahns
- Plant Biochemistry, Heinrich-Heine-University Düsseldorf, Universitätsstrasse 1, 40225 Düsseldorf, Germany
| | - Martin M Kater
- Dipartimento di Bioscienze, Università degli studi di Milano, 20133 Milano, Italy
| | - Dario Leister
- Plant Molecular Biology (Botany), Department Biology I, Ludwig-Maximilians-Universität München, 82152 Planegg-Martinsried, Germany
| | - Giovanni Finazzi
- Laboratoire de Physiologie Cellulaire & Végétale, Unité Mixte de Recherche 5168, Centre National de la Recherche Scientifique, 38054 Grenoble, France
| | - Eva-Mari Aro
- Molecular Plant Biology, Department of Biochemistry, University of Turku, 20014 Turku, Finland
| | - Roberto Barbato
- Dipartimento di Scienze dell'Ambiente e della Vita, Università del Piemonte Orientale, viale Teresa Michel 11, 15121 Alessandria, Italy
| | - Paolo Pesaresi
- Dipartimento di Bioscienze, Università degli studi di Milano, 20133 Milano, Italy.
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31
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Ding Z, Weissmann S, Wang M, Du B, Huang L, Wang L, Tu X, Zhong S, Myers C, Brutnell TP, Sun Q, Li P. Identification of Photosynthesis-Associated C4 Candidate Genes through Comparative Leaf Gradient Transcriptome in Multiple Lineages of C3 and C4 Species. PLoS One 2015; 10:e0140629. [PMID: 26465154 PMCID: PMC4605685 DOI: 10.1371/journal.pone.0140629] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2015] [Accepted: 09/29/2015] [Indexed: 01/10/2023] Open
Abstract
Leaves of C4 crops usually have higher radiation, water and nitrogen use efficiencies compared to the C3 species. Engineering C4 traits into C3 crops has been proposed as one of the most promising ways to repeal the biomass yield ceiling. To better understand the function of C4 photosynthesis, and to identify candidate genes that are associated with the C4 pathways, a comparative transcription network analysis was conducted on leaf developmental gradients of three C4 species including maize, green foxtail and sorghum and one C3 species, rice. By combining the methods of gene co-expression and differentially co-expression networks, we identified a total of 128 C4 specific genes. Besides the classic C4 shuttle genes, a new set of genes associated with light reaction, starch and sucrose metabolism, metabolites transportation, as well as transcription regulation, were identified as involved in C4 photosynthesis. These findings will provide important insights into the differential gene regulation between C3 and C4 species, and a good genetic resource for establishing C4 pathways in C3 crops.
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Affiliation(s)
- Zehong Ding
- The Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Hainan, Haikou, China
- Computational Biology Service Unit, Life Sciences Core Laboratories Center, Cornell University, Ithaca, New York, United States of America
| | - Sarit Weissmann
- The Donald Danforth Plant Science Center, St. Louis, Missouri, United States of America
| | - Minghui Wang
- Computational Biology Service Unit, Life Sciences Core Laboratories Center, Cornell University, Ithaca, New York, United States of America
| | - Baijuan Du
- State Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, Tai’an, Shandong, China
| | - Lei Huang
- Computational Biology Service Unit, Life Sciences Core Laboratories Center, Cornell University, Ithaca, New York, United States of America
| | - Lin Wang
- The Donald Danforth Plant Science Center, St. Louis, Missouri, United States of America
| | - Xiaoyu Tu
- Partner State Key Laboratory of Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China
| | - Silin Zhong
- Partner State Key Laboratory of Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China
| | - Christopher Myers
- Computational Biology Service Unit, Life Sciences Core Laboratories Center, Cornell University, Ithaca, New York, United States of America
| | - Thomas P. Brutnell
- The Donald Danforth Plant Science Center, St. Louis, Missouri, United States of America
| | - Qi Sun
- Computational Biology Service Unit, Life Sciences Core Laboratories Center, Cornell University, Ithaca, New York, United States of America
| | - Pinghua Li
- State Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, Tai’an, Shandong, China
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32
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Kumar RA, Oldenburg DJ, Bendich AJ. Molecular integrity of chloroplast DNA and mitochondrial DNA in mesophyll and bundle sheath cells of maize. PLANTA 2015; 241:1221-30. [PMID: 25638645 DOI: 10.1007/s00425-015-2253-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2014] [Accepted: 01/22/2015] [Indexed: 05/10/2023]
Abstract
When compared to maize mesophyll cells, the plastid and mitochondrial DNAs in bundle sheath cells are less fragmented, less damaged, and contain fewer DNA polymerase-blocking impediments. Plants that conduct C4 photosynthesis differ from those that employ C3 photosynthesis with respect to leaf anatomy, biochemical pathways, and the proteins and RNA transcripts present in the leaf mesophyll (M) and bundle sheath (BS) cells. Here, we investigate the organellar DNA (orgDNA) from plastids and mitochondria in these two cell types. We use standard qPCR, long PCR, and DNA damage analysis to quantify the amount and quality of orgDNA in isolated M and BS cells of maize. When compared to M cells, BS cells have less orgDNA damage and a higher percentage of unimpeded orgDNA. In addition, the orgDNA is more fragmented in M than BS cells, although orgDNA in BS is subject to more in vitro repair. We suggest that the differences in molecular integrity of orgDNA in these two cells are due to higher levels of reactive oxygen species in M than BS cells.
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Affiliation(s)
- Rachana A Kumar
- Department of Biology, University of Washington, Seattle, WA, 98195-5325, USA
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33
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Offermann S, Friso G, Doroshenk KA, Sun Q, Sharpe RM, Okita TW, Wimmer D, Edwards GE, van Wijk KJ. Developmental and Subcellular Organization of Single-Cell C₄ Photosynthesis in Bienertia sinuspersici Determined by Large-Scale Proteomics and cDNA Assembly from 454 DNA Sequencing. J Proteome Res 2015; 14:2090-108. [PMID: 25772754 DOI: 10.1021/pr5011907] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Kranz C4 species strictly depend on separation of primary and secondary carbon fixation reactions in different cell types. In contrast, the single-cell C4 (SCC4) species Bienertia sinuspersici utilizes intracellular compartmentation including two physiologically and biochemically different chloroplast types; however, information on identity, localization, and induction of proteins required for this SCC4 system is currently very limited. In this study, we determined the distribution of photosynthesis-related proteins and the induction of the C4 system during development by label-free proteomics of subcellular fractions and leaves of different developmental stages. This was enabled by inferring a protein sequence database from 454 sequencing of Bienertia cDNAs. Large-scale proteome rearrangements were observed as C4 photosynthesis developed during leaf maturation. The proteomes of the two chloroplasts are different with differential accumulation of linear and cyclic electron transport components, primary and secondary carbon fixation reactions, and a triose-phosphate shuttle that is shared between the two chloroplast types. This differential protein distribution pattern suggests the presence of a mRNA or protein-sorting mechanism for nuclear-encoded, chloroplast-targeted proteins in SCC4 species. The combined information was used to provide a comprehensive model for NAD-ME type carbon fixation in SCC4 species.
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Affiliation(s)
- Sascha Offermann
- †Institute of Botany, Leibniz University, Herrenhaeuser Strasse 2, Hannover 30419, Germany
| | - Giulia Friso
- ‡Department of Plant Biology, Cornell University, 332 Emerson Hall, Ithaca, New York 14853, United States
| | - Kelly A Doroshenk
- §Institute of Biological Chemistry, Washington State University, 299 Clark Hall, Pullman, Washington 99164, United States
| | - Qi Sun
- ∥Computational Biology Service Unit, Cornell University, 618 Rhodes Hall, Ithaca, New York 14853, United States
| | - Richard M Sharpe
- ⊥School of Biological Science, Washington State University, 303 Heald Hall, Pullman, Washington 99164, United States
| | - Thomas W Okita
- §Institute of Biological Chemistry, Washington State University, 299 Clark Hall, Pullman, Washington 99164, United States
| | - Diana Wimmer
- †Institute of Botany, Leibniz University, Herrenhaeuser Strasse 2, Hannover 30419, Germany
| | - Gerald E Edwards
- ⊥School of Biological Science, Washington State University, 303 Heald Hall, Pullman, Washington 99164, United States
| | - Klaas J van Wijk
- ‡Department of Plant Biology, Cornell University, 332 Emerson Hall, Ithaca, New York 14853, United States
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Abstract
Cereals are the most important crop plant supplying staple food throughout the world. The economic importance and continued breeding of crop plants such as rice, maize, wheat, or barley require a detailed scientific understanding of adaptive and developmental processes. Protein phosphorylation is one of the most important regulatory posttranslational modifications and its analysis allows deriving functional and regulatory principles in plants. This minireview summarizes the current knowledge of phosphoproteomic studies in cereals.
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Affiliation(s)
- Pingfang Yang
- Key Laboratory of Plant Germplasm Enhancement and Speciality Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuchang Moshan, Wuhan, 430074, China,
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35
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Peterson RB, Oja V, Eichelmann H, Bichele I, Dall'Osto L, Laisk A. Fluorescence F 0 of photosystems II and I in developing C3 and C 4 leaves, and implications on regulation of excitation balance. PHOTOSYNTHESIS RESEARCH 2014; 122:41-56. [PMID: 24817180 DOI: 10.1007/s11120-014-0009-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2013] [Accepted: 04/24/2014] [Indexed: 05/12/2023]
Abstract
This work addresses the question of occurrence and function of photosystem II (PSII) in bundle sheath (BS) cells of leaves possessing NADP-malic enzyme-type C4 photosynthesis (Zea mays). Although no requirement for PSII activity in the BS has been established, several component proteins of PSII have been detected in BS cells of developing maize leaves exhibiting O2-insensitive photosynthesis. We used the basal fluorescence emissions of PSI (F 0I) and PSII (F 0II) as quantitative indicators of the respective relative photosystem densities. Chl fluorescence induction was measured simultaneously at 680 and 750 nm. In mature leaves, the F m(680)/F 0(680) ratio was 10.5 but less in immature leaves. We propose that the lower ratio was caused by the presence of a distinct non-variable component, F c, emitting at 680 and 750 nm. After F c was subtracted, the fluorescence of PSI (F 0I) was detected as a non-variable component at 750 nm and was undetectably low at 680 nm. Contents of Chls a and b were measured in addition to Chl fluorescence. The Chl b/(a + b) was relatively stable in developing sunflower leaves (0.25-0.26), but in maize it increased from 0.09 to 0.21 with leaf tissue age. In sunflower, the F 0I/(F 0I + F 0II) was 0.39 ± 0.01 independent of leaf age, but in maize, this parameter was 0.65 in young tissue of very low Chl content (20-50 mg m(-2)) falling to a stable level of 0.53 ± 0.01 at Chl contents >100 mg m(-2). The values of F 0I/(F 0I + F 0II) showed that in sunflower, excitation was partitioned between PSII and PSI in a ratio of 2:1, but the same ratio was 1:1 in the C4 plant. The latter is consistent with a PSII:PSI ratio of 2:1 in maize mesophyll cells and PSI only in BS cells (2:1:1 distribution). We suggest, moreover, that redox mediation of Chl synthesis, rather than protein accumulation, regulates photosystem assembly to ensure optimum excitation balance between functional PSII and PSI. Indeed, the apparent necessity for two Chls (a and b) may reside in their targeted functions in influencing accumulation of PSI and PSII, respectively, as opposed to their spectral differences.
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Affiliation(s)
- Richard B Peterson
- Department of Biochemistry and Genetics, The Connecticut Agricultural Experiment Station, 123 Huntington St., New Haven, CT, 06511, USA,
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36
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Bräutigam A, Schliesky S, Külahoglu C, Osborne CP, Weber APM. Towards an integrative model of C4 photosynthetic subtypes: insights from comparative transcriptome analysis of NAD-ME, NADP-ME, and PEP-CK C4 species. JOURNAL OF EXPERIMENTAL BOTANY 2014; 65:3579-93. [PMID: 24642845 PMCID: PMC4085959 DOI: 10.1093/jxb/eru100] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
C4 photosynthesis affords higher photosynthetic carbon conversion efficiency than C3 photosynthesis and it therefore represents an attractive target for engineering efforts aiming to improve crop productivity. To this end, blueprints are required that reflect C4 metabolism as closely as possible. Such blueprints have been derived from comparative transcriptome analyses of C3 species with related C4 species belonging to the NAD-malic enzyme (NAD-ME) and NADP-ME subgroups of C4 photosynthesis. However, a comparison between C3 and the phosphoenolpyruvate carboxykinase (PEP-CK) subtype of C4 photosynthesis is still missing. An integrative analysis of all three C4 subtypes has also not been possible to date, since no comparison has been available for closely related C3 and PEP-CK C4 species. To generate the data, the guinea grass Megathyrsus maximus, which represents a PEP-CK species, was analysed in comparison with a closely related C3 sister species, Dichanthelium clandestinum, and with publicly available sets of RNA-Seq data from C4 species belonging to the NAD-ME and NADP-ME subgroups. The data indicate that the core C4 cycle of the PEP-CK grass M. maximus is quite similar to that of NAD-ME species with only a few exceptions, such as the subcellular location of transfer acid production and the degree and pattern of up-regulation of genes encoding C4 enzymes. One additional mitochondrial transporter protein was associated with the core cycle. The broad comparison identified sucrose and starch synthesis, as well as the prevention of leakage of C4 cycle intermediates to other metabolic pathways, as critical components of C4 metabolism. Estimation of intercellular transport fluxes indicated that flux between cells is increased by at least two orders of magnitude in C4 species compared with C3 species. In contrast to NAD-ME and NADP-ME species, the transcription of photosynthetic electron transfer proteins was unchanged in PEP-CK. In summary, the PEP-CK blueprint of M. maximus appears to be simpler than those of NAD-ME and NADP-ME plants.
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Affiliation(s)
- Andrea Bräutigam
- Institute of Plant Biochemistry, Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich-Heine-University, Universitätsstrasse 1, D-40225 Düsseldorf, Germany
| | - Simon Schliesky
- Institute of Plant Biochemistry, Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich-Heine-University, Universitätsstrasse 1, D-40225 Düsseldorf, Germany
| | - Canan Külahoglu
- Institute of Plant Biochemistry, Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich-Heine-University, Universitätsstrasse 1, D-40225 Düsseldorf, Germany
| | - Colin P Osborne
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - Andreas P M Weber
- Institute of Plant Biochemistry, Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich-Heine-University, Universitätsstrasse 1, D-40225 Düsseldorf, Germany
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Aubry S, Smith-Unna RD, Boursnell CM, Kopriva S, Hibberd JM. Transcript residency on ribosomes reveals a key role for the Arabidopsis thaliana bundle sheath in sulfur and glucosinolate metabolism. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2014; 78:659-73. [PMID: 24617819 DOI: 10.1111/tpj.12502] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2013] [Revised: 02/21/2014] [Accepted: 02/26/2014] [Indexed: 05/03/2023]
Abstract
Leaves of angiosperms are made up of multiple distinct cell types. While the function of mesophyll cells, guard cells, phloem companion cells and sieve elements are clearly described, this is not the case for the bundle sheath (BS). To provide insight into the role of the BS in the C3 species Arabidopsis thaliana, we labelled ribosomes in this cell type with a FLAG tag. We then used immunocapture to isolate these ribosomes, followed by sequencing of resident mRNAs. This showed that 5% of genes showed specific splice forms in the BS, and that 15% of genes were preferentially expressed in these cells. The BS translatome strongly implies that the BS plays specific roles in sulfur transport and metabolism, glucosinolate biosynthesis and trehalose metabolism. Much of the C4 cycle is differentially expressed between the C3 BS and the rest of the leaf. Furthermore, the global patterns of transcript residency on BS ribosomes overlap to a greater extent with cells of the root pericycle than any other cell type. This analysis provides the first insight into the molecular function of this cell type in C3 species, and also identifies characteristics of BS cells that are probably ancestral to both C3 and C4 plants.
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Affiliation(s)
- Sylvain Aubry
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, UK
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38
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Manandhar-Shrestha K, Tamot B, Pratt EPS, Saitie S, Bräutigam A, Weber APM, Hoffmann-Benning S. Comparative proteomics of chloroplasts envelopes from bundle sheath and mesophyll chloroplasts reveals novel membrane proteins with a possible role in c4-related metabolite fluxes and development. FRONTIERS IN PLANT SCIENCE 2013; 4:65. [PMID: 23543921 PMCID: PMC3610082 DOI: 10.3389/fpls.2013.00065] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2012] [Accepted: 03/08/2013] [Indexed: 05/08/2023]
Abstract
As the world population grows, our need for food increases drastically. Limited amounts of arable land lead to a competition between food and fuel crops, while changes in the global climate may impact future crop yields. Thus, a second "green revolution" will need a better understanding of the processes essential for plant growth and development. One approach toward the solution of this problem is to better understand regulatory and transport processes in C4 plants. C4 plants display an up to 10-fold higher apparent CO2 assimilation and higher yields while maintaining high water use efficiency. This requires differential regulation of mesophyll (M) and bundle sheath (BS) chloroplast development as well as higher metabolic fluxes of photosynthetic intermediates between cells and particularly across chloroplast envelopes. While previous analyses of overall chloroplast membranes have yielded significant insight, our comparative proteomics approach using enriched BS and M chloroplast envelopes of Zea mays allowed us to identify 37 proteins of unknown function that have not been seen in these earlier studies. We identified 280 proteins, 84% of which are known/predicted to be present in chloroplasts. Seventy-four percent have a known or predicted membrane association. Twenty-one membrane proteins were 2-15 times more abundant in BS cells, while 36 of the proteins were more abundant in M chloroplast envelopes. These proteins could represent additional candidates of proteins essential for development or metabolite transport processes in C4 plants. RT-PCR confirmed differential expression of 13 candidate genes. Chloroplast association for seven proteins was confirmed using YFP/GFP labeling. Gene expression of four putative transporters was examined throughout the leaf and during the greening of leaves. Genes for a PIC-like protein and an ER-AP-like protein show an early transient increase in gene expression during the transition to light. In addition, PIC gene expression is increased in the immature part of the leaf and was lower in the fully developed parts of the leaf, suggesting a need for/incorporation of the protein during chloroplast development.
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Affiliation(s)
- K. Manandhar-Shrestha
- Department of Biochemistry and Molecular Biology, Michigan State UniversityEast Lansing, MI, USA
| | - B. Tamot
- Department of Biochemistry and Molecular Biology, Michigan State UniversityEast Lansing, MI, USA
| | - E. P. S. Pratt
- Department of Biochemistry and Molecular Biology, Michigan State UniversityEast Lansing, MI, USA
| | - S. Saitie
- Department of Biochemistry and Molecular Biology, Michigan State UniversityEast Lansing, MI, USA
| | - A. Bräutigam
- Plant Biochemistry, Heinrich-Heine University DüsseldorfDüsseldorf, Germany
| | - A. P. M. Weber
- Plant Biochemistry, Heinrich-Heine University DüsseldorfDüsseldorf, Germany
| | - Susanne Hoffmann-Benning
- Department of Biochemistry and Molecular Biology, Michigan State UniversityEast Lansing, MI, USA
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39
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Grouneva I, Gollan PJ, Kangasjärvi S, Suorsa M, Tikkanen M, Aro EM. Phylogenetic viewpoints on regulation of light harvesting and electron transport in eukaryotic photosynthetic organisms. PLANTA 2013; 237:399-412. [PMID: 22971817 DOI: 10.1007/s00425-012-1744-5] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2012] [Accepted: 08/03/2012] [Indexed: 06/01/2023]
Abstract
The comparative study of photosynthetic regulation in the thylakoid membrane of different phylogenetic groups can yield valuable insights into mechanisms, genetic requirements and redundancy of regulatory processes. This review offers a brief summary on the current understanding of light harvesting and photosynthetic electron transport regulation in different photosynthetic eukaryotes, with a special focus on the comparison between higher plants and unicellular algae of secondary endosymbiotic origin. The foundations of thylakoid structure, light harvesting, reversible protein phosphorylation and PSI-mediated cyclic electron transport are traced not only from green algae to vascular plants but also at the branching point between the "green" and the "red" lineage of photosynthetic organisms. This approach was particularly valuable in revealing processes that (1) are highly conserved between phylogenetic groups, (2) serve a common physiological role but nevertheless originate in divergent genetic backgrounds or (3) are missing in one phylogenetic branch despite their unequivocal importance in another, necessitating a search for alternative regulatory mechanisms and interactions.
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Affiliation(s)
- Irina Grouneva
- Molecular Plant Biology, University of Turku, Tykistökatu 6A, Turku, Finland.
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40
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Pechanova O, Takáč T, Šamaj J, Pechan T. Maize proteomics: An insight into the biology of an important cereal crop. Proteomics 2013. [DOI: 10.1002/pmic.201200275] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Olga Pechanova
- Mississippi State Chemical Laboratory; Mississippi State University; Mississippi State; MS; USA
| | - Tomáš Takáč
- Centre of the Region Haná for Biotechnological and Agricultural Research, Department of Cell Biology, Faculty of Science; Palacký University; Olomouc; Czech Republic
| | - Jozef Šamaj
- Centre of the Region Haná for Biotechnological and Agricultural Research, Department of Cell Biology, Faculty of Science; Palacký University; Olomouc; Czech Republic
| | - Tibor Pechan
- Institute for Genomics, Biocomputing and Biotechnology, Mississippi Agricultural and Forestry Experiment Station,; Mississippi State University; Mississippi State; MS; USA
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41
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Huang M, Friso G, Nishimura K, Qu X, Olinares PDB, Majeran W, Sun Q, van Wijk KJ. Construction of Plastid Reference Proteomes for Maize and Arabidopsis and Evaluation of Their Orthologous Relationships; The Concept of Orthoproteomics. J Proteome Res 2012. [DOI: 10.1021/pr300952g] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Mingshu Huang
- Department
of Plant Biology and ‡Computational Biology Service Unit, Cornell University, Ithaca, New York 14853, United States
| | - Giulia Friso
- Department
of Plant Biology and ‡Computational Biology Service Unit, Cornell University, Ithaca, New York 14853, United States
| | - Kenji Nishimura
- Department
of Plant Biology and ‡Computational Biology Service Unit, Cornell University, Ithaca, New York 14853, United States
| | - Xian Qu
- Department
of Plant Biology and ‡Computational Biology Service Unit, Cornell University, Ithaca, New York 14853, United States
| | - Paul Dominic B. Olinares
- Department
of Plant Biology and ‡Computational Biology Service Unit, Cornell University, Ithaca, New York 14853, United States
| | - Wojciech Majeran
- Department
of Plant Biology and ‡Computational Biology Service Unit, Cornell University, Ithaca, New York 14853, United States
| | - Qi Sun
- Department
of Plant Biology and ‡Computational Biology Service Unit, Cornell University, Ithaca, New York 14853, United States
| | - Klaas J. van Wijk
- Department
of Plant Biology and ‡Computational Biology Service Unit, Cornell University, Ithaca, New York 14853, United States
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42
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Yin X, Struik PC. Mathematical review of the energy transduction stoichiometries of C(4) leaf photosynthesis under limiting light. PLANT, CELL & ENVIRONMENT 2012; 35:1299-312. [PMID: 22321164 DOI: 10.1111/j.1365-3040.2012.02490.x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
A generalized model for electron (e(-) ) transport limited C(4) photosynthesis of NAD-malic enzyme and NADP-malic enzyme subtypes is presented. The model is used to review the thylakoid stoichiometries in vivo under strictly limiting light conditions, using published data on photosynthetic quantum yield and on photochemical efficiencies of photosystems (PS). Model review showed that cyclic e(-) transport (CET), rather than direct O(2) photoreduction, most likely contributed significantly to the production of extra ATP required for the C(4) cycle. Estimated CET, and non-cyclic e(-) transport supporting processes like nitrogen reduction, accounted for ca. 45 and 7% of total photosystem I (PSI) e(-) fluxes, respectively. The factor for excitation partitioning to photosystem II (PSII) was ca. 0.4. Further model analysis, in terms of the balanced NADPH: ATP ratio required for metabolism, indicated that: (1) the Q-cycle is obligatory; (2) the proton: ATP ratio is 4; and (3) the efficiency of proton pumping per e(-) transferred through the cytochrome b(6) /f complex is the same for CET and non-cyclic pathways. The analysis also gave an approach to theoretically assess CO(2) leakiness from bundle-sheath cells, and projected a leakiness of 0.07-0.16. Compared with C(3) photosynthesis, the most striking C(4) stoichiometry is its high fraction of CET.
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Affiliation(s)
- Xinyou Yin
- Centre for Crop Systems Analysis, Department of Plant Sciences, Wageningen University, P. O. Box 430, 6700 AK Wageningen, The Netherlands.
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43
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Alvarez CE, Detarsio E, Moreno S, Andreo CS, Drincovich MF. Functional characterization of residues involved in redox modulation of maize photosynthetic NADP-malic enzyme activity. PLANT & CELL PHYSIOLOGY 2012; 53:1144-53. [PMID: 22514092 DOI: 10.1093/pcp/pcs059] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Two highly similar plastidic NADP-malic enzymes (NADP-MEs) are found in the C(4) species maize (Zea mays); one exclusively expressed in the bundle sheath cells (BSCs) and involved in C(4) photosynthesis (ZmC(4)-NADP-ME); and the other (ZmnonC(4)-NADP-ME) with housekeeping roles. In the present work, these two NADP-MEs were analyzed regarding their redox-dependent activity modulation. The results clearly show that ZmC(4)-NADP-ME is the only one modulated by redox status, and that its oxidation produces a conformational change limiting the catalytic process, although inducing higher affinity binding of the substrates. The reversal of ZmC(4)-NADP-ME oxidation by chemical reductants suggests the presence of thiol groups able to form disulfide bonds. In order to identify the cysteine residues involved in the activity modulation, site-directed mutagenesis and MALDI-TOF (matrix-assisted laser desorption ionization-time of flight) analysis of ZmC(4)-NADP-ME were performed. The results obtained allowed the identification of Cys192, Cys246 (not conserved in ZmnonC(4)-NADP-ME), Cys270 and Cys410 as directly or indirectly implicated in ZmC(4)-NADP-ME redox modulation. These residues may be involved in forming disulfide bridge(s) or in the modulation of the oxidation of critical residues. Overall, the results indicate that, besides having acquired a high level of expression and localization in BSCs, ZmC(4)-NADP-ME displays a particular redox modulation, which may be required to accomplish the C(4) photosynthetic metabolism. Therefore, the present work could provide new insights into the regulatory mechanisms potentially involved in the recruitment of genes for the C(4) pathway during evolution.
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Affiliation(s)
- Clarisa E Alvarez
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), Universidad Nacional de Rosario, Suipacha 531, Rosario, Argentina
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44
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Covshoff S, Hibberd JM. Integrating C4 photosynthesis into C3 crops to increase yield potential. Curr Opin Biotechnol 2012; 23:209-14. [DOI: 10.1016/j.copbio.2011.12.011] [Citation(s) in RCA: 73] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2011] [Revised: 10/31/2011] [Accepted: 12/14/2011] [Indexed: 11/26/2022]
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Williams BP, Aubry S, Hibberd JM. Molecular evolution of genes recruited into C₄ photosynthesis. TRENDS IN PLANT SCIENCE 2012; 17:213-20. [PMID: 22326564 DOI: 10.1016/j.tplants.2012.01.008] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2011] [Revised: 01/12/2012] [Accepted: 01/16/2012] [Indexed: 05/03/2023]
Abstract
The C₄ pathway is found in 62 lineages of land plants. We assess evidence for parallel versus convergent evolution of C₄ photosynthesis from three approaches: (i) studies of specific genes and cis-elements controlling their expression; (ii) phylogenetic analyses of mRNAs and inferred amino acid sequences; and (iii) analysis of C₃ and C₄ genomes and transcriptomes. Evidence suggests that although convergent evolution is common, parallel evolution can underlie both changes to gene expression and amino acid sequence. cis-elements that direct cell specificity in C₄ leaves are present in C₃ orthologues of genes recruited into C₄, probably facilitating this parallel evolution. From this, and genomic data, we propose that gene duplication followed by neofunctionalisation is not necessarily important in the evolution of C₄ biochemistry.
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Affiliation(s)
- Ben P Williams
- Department of Plant Sciences, Downing Street, University of Cambridge, Cambridge CB2 3EA, UK
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46
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Agrawal GK, Bourguignon J, Rolland N, Ephritikhine G, Ferro M, Jaquinod M, Alexiou KG, Chardot T, Chakraborty N, Jolivet P, Doonan JH, Rakwal R. Plant organelle proteomics: collaborating for optimal cell function. MASS SPECTROMETRY REVIEWS 2011; 30:772-853. [PMID: 21038434 DOI: 10.1002/mas.20301] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2009] [Revised: 02/02/2010] [Accepted: 02/02/2010] [Indexed: 05/10/2023]
Abstract
Organelle proteomics describes the study of proteins present in organelle at a particular instance during the whole period of their life cycle in a cell. Organelles are specialized membrane bound structures within a cell that function by interacting with cytosolic and luminal soluble proteins making the protein composition of each organelle dynamic. Depending on organism, the total number of organelles within a cell varies, indicating their evolution with respect to protein number and function. For example, one of the striking differences between plant and animal cells is the plastids in plants. Organelles have their own proteins, and few organelles like mitochondria and chloroplast have their own genome to synthesize proteins for specific function and also require nuclear-encoded proteins. Enormous work has been performed on animal organelle proteomics. However, plant organelle proteomics has seen limited work mainly due to: (i) inter-plant and inter-tissue complexity, (ii) difficulties in isolation of subcellular compartments, and (iii) their enrichment and purity. Despite these concerns, the field of organelle proteomics is growing in plants, such as Arabidopsis, rice and maize. The available data are beginning to help better understand organelles and their distinct and/or overlapping functions in different plant tissues, organs or cell types, and more importantly, how protein components of organelles behave during development and with surrounding environments. Studies on organelles have provided a few good reviews, but none of them are comprehensive. Here, we present a comprehensive review on plant organelle proteomics starting from the significance of organelle in cells, to organelle isolation, to protein identification and to biology and beyond. To put together such a systematic, in-depth review and to translate acquired knowledge in a proper and adequate form, we join minds to provide discussion and viewpoints on the collaborative nature of organelles in cell, their proper function and evolution.
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Affiliation(s)
- Ganesh Kumar Agrawal
- Research Laboratory for Biotechnology and Biochemistry (RLABB), P.O. Box 13265, Sanepa, Kathmandu, Nepal.
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47
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Chen T, Ye R, Fan X, Li X, Lin Y. Identification of C4 photosynthesis metabolism and regulatory-associated genes in Eleocharis vivipara by SSH. PHOTOSYNTHESIS RESEARCH 2011; 108:157-170. [PMID: 21739352 DOI: 10.1007/s11120-011-9668-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2011] [Accepted: 06/27/2011] [Indexed: 05/31/2023]
Abstract
This is the first effort to investigate the candidate genes involved in kranz developmental regulation and C(4) metabolic fluxes in Eleocharis vivipara, which is a leafless freshwater amphibious plant and possesses a distinct culms anatomy structure and photosynthetic pattern in contrasting environments. A terrestrial specific SSH library was constructed to investigate the genes involved in kranz anatomy developmental regulation and C(4) metabolic fluxes. A total of 73 ESTs and 56 unigenes in 384 clones were identified by array hybridization and sequencing. In total, 50 unigenes had homologous genes in the databases of rice and Arabidopsis. The real-time quantitative PCR results showed that most of the genes were accumulated in terrestrial culms and ABA-induced culms. The C(4) marker genes were stably accumulated during the culms development process in terrestrial culms. With respect to C(3) culms, C(4) photosynthesis metabolism consumed much more transporters and translocators related to ion metabolism, organic acids and carbohydrate metabolism, phosphate metabolism, amino acids metabolism, and lipids metabolism. Additionally, ten regulatory genes including five transcription factors, four receptor-like proteins, and one BURP protein were identified. These regulatory genes, which co-accumulated with the culms developmental stages, may play important roles in culms structure developmental regulation, bundle sheath chloroplast maturation, and environmental response. These results shed new light on the C(4) metabolic fluxes, environmental response, and anatomy structure developmental regulation in E. vivipara.
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Affiliation(s)
- Taiyu Chen
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China
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48
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Gowik U, Bräutigam A, Weber KL, Weber APM, Westhoff P. Evolution of C4 photosynthesis in the genus Flaveria: how many and which genes does it take to make C4? THE PLANT CELL 2011; 23:2087-105. [PMID: 21705644 PMCID: PMC3160039 DOI: 10.1105/tpc.111.086264] [Citation(s) in RCA: 146] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2011] [Revised: 05/24/2011] [Accepted: 06/15/2011] [Indexed: 05/18/2023]
Abstract
Selective pressure exerted by a massive decline in atmospheric CO(2) levels 55 to 40 million years ago promoted the evolution of a novel, highly efficient mode of photosynthetic carbon assimilation known as C(4) photosynthesis. C(4) species have concurrently evolved multiple times in a broad range of plant families, and this multiple and parallel evolution of the complex C(4) trait indicates a common underlying evolutionary mechanism that might be elucidated by comparative analyses of related C(3) and C(4) species. Here, we use mRNA-Seq analysis of five species within the genus Flaveria, ranging from C(3) to C(3)-C(4) intermediate to C(4) species, to quantify the differences in the transcriptomes of closely related plant species with varying degrees of C(4)-associated characteristics. Single gene analysis defines the C(4) cycle enzymes and transporters more precisely and provides new candidates for yet unknown functions as well as identifies C(4) associated pathways. Molecular evidence for a photorespiratory CO(2) pump prior to the establishment of the C(4) cycle-based CO(2) pump is provided. Cluster analysis defines the upper limit of C(4)-related gene expression changes in mature leaves of Flaveria as 3582 alterations.
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Affiliation(s)
- Udo Gowik
- Institute of Plant Molecular and Developmental Biology, Heinrich-Heine-University, 40225 Duesseldorf, Germany.
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49
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Johnson GN. Reprint of: physiology of PSI cyclic electron transport in higher plants. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2011; 1807:906-11. [PMID: 21620796 DOI: 10.1016/j.bbabio.2011.05.008] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2010] [Revised: 11/12/2010] [Accepted: 11/13/2010] [Indexed: 11/17/2022]
Abstract
Having long been debated, it is only in the last few years that a concensus has emerged that the cyclic flow of electrons around Photosystem I plays an important and general role in the photosynthesis of higher plants. Two major pathways of cyclic flow have been identified, involving either a complex termed NDH or mediated via a pathway involving a protein PGR5 and two functions have been described-to generate ATP and to provide a pH gradient inducing non-photochemical quenching. The best evidence for the occurrence of the two pathways comes from measurements under stress conditions-high light, drought and extreme temperatures. In this review, the possible relative functions and importance of the two pathways is discussed as well as evidence as to how the flow through these pathways is regulated. Our growing knowledge of the proteins involved in cyclic electron flow will, in the future, enable us to understand better the occurrence and diversity of cyclic electron transport pathways. This article is part of a Special Issue entitled: Regulation of Electron Transport in Chloroplasts.
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Peterhansel C. Best practice procedures for the establishment of a C(4) cycle in transgenic C(3) plants. JOURNAL OF EXPERIMENTAL BOTANY 2011; 62:3011-3019. [PMID: 21335437 DOI: 10.1093/jxb/err027] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
C(4) plants established a mechanism for the concentration of CO(2) in the vicinity of ribulose-1,5-bisphosphate carboxylase/oxygenase in order to saturate the enzyme with substrate and substantially to reduce the alternative fixation of O(2) that results in energy losses. Transfer of the C(4) mechanism to C(3) plants has been repeatedly tested, but none of the approaches so far resulted in transgenic plants with enhanced photosynthesis or growth. Instead, often deleterious effects were observed. A true C(4) cycle requires the co-ordinated activity of multiple enzymes in different cell types and in response to diverse environmental and metabolic stimuli. This review summarizes our current knowledge about the most appropriate regulatory elements and coding sequences for the establishment of C(4) protein activities in C(3) plants. In addition, technological breakthroughs for the efficient transfer of the numerous genes probably required to transform a C(3) plant into a C(4) plant will be discussed.
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Affiliation(s)
- Christoph Peterhansel
- Institute of Botany, Leibniz University Hannover, Herrenhaeuser Straße 2, D-30419 Hannover, Germany.
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