1
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Yoshida K, Sasaki Y, Kuwabara A, Ikuhara Y. Applications of electron microscopic observations to electrochemistry in liquid electrolytes for batteries. Microscopy (Oxf) 2024; 73:154-168. [PMID: 37698551 DOI: 10.1093/jmicro/dfad044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 08/17/2023] [Accepted: 09/07/2023] [Indexed: 09/13/2023] Open
Abstract
Herein, we review notable points from observations of electrochemical reactions in a liquid electrolyte by liquid-phase electron microscopy. In situ microscopic observations of electrochemical reactions are urgently required, particularly to solve various battery issues. Battery performance is evaluated by various electrochemical measurements of bulk samples. However, it is necessary to understand the physical/chemical phenomena occurring in batteries to elucidate the reaction mechanisms. Thus, in situ microscopic observation is effective for understanding the reactions that occur in batteries. Herein, we focus on two methods, of the liquid phase (scanning) transmission electron microscopy and liquid phase scanning electron microscopy, and summarize the advantages and disadvantages of both methods.
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Affiliation(s)
- Kaname Yoshida
- Nanostructures Research Laboratory, Japan Fine Ceramics Center, 2-4-1 Mutsuno, Atsuta-ku, Nagoya 456-8587, Japan
| | - Yuki Sasaki
- Nanostructures Research Laboratory, Japan Fine Ceramics Center, 2-4-1 Mutsuno, Atsuta-ku, Nagoya 456-8587, Japan
| | - Akihide Kuwabara
- Nanostructures Research Laboratory, Japan Fine Ceramics Center, 2-4-1 Mutsuno, Atsuta-ku, Nagoya 456-8587, Japan
| | - Yuichi Ikuhara
- Nanostructures Research Laboratory, Japan Fine Ceramics Center, 2-4-1 Mutsuno, Atsuta-ku, Nagoya 456-8587, Japan
- Institute of Engineering Innovation, School of Engineering, The University of Tokyo, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-8656, Japan
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2
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Rutherford D, Kolářová K, Čech J, Haušild P, Kuliček J, Ukraintsev E, Stehlík Š, Dao R, Neuman J, Rezek B. Correlative atomic force microscopy and scanning electron microscopy of bacteria-diamond-metal nanocomposites. Ultramicroscopy 2024; 258:113909. [PMID: 38157689 DOI: 10.1016/j.ultramic.2023.113909] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 09/06/2023] [Accepted: 12/08/2023] [Indexed: 01/03/2024]
Abstract
Research investigating the interface between biological organisms and nanomaterials nowadays requires multi-faceted microscopic methods to elucidate the interaction mechanisms and effects. Here we describe a novel approach and methodology correlating data from an atomic force microscope inside a scanning electron microscope (AFM-in-SEM). This approach is demonstrated on bacteria-diamond-metal nanocomposite samples relevant in current life science research. We describe a procedure for preparing such multi-component test samples containing E. coli bacteria and chitosan-coated hydrogenated nanodiamonds decorated with silver nanoparticles on a carbon-coated gold grid. Microscopic topography information (AFM) is combined with chemical, material, and morphological information (SEM using SE and BSE at varied acceleration voltages) from the same region of interest and processed to create 3D correlative probe-electron microscopy (CPEM) images. We also establish a novel 3D RGB color image algorithm for merging multiple SE/BSE data from SEM with the AFM surface topography data which provides additional information about microscopic interaction of the diamond-metal nanocomposite with bacteria, not achievable by individual analyses. The methodology of CPEM data interpretation is independently corroborated by further in-situ (EDS) and ex-situ (micro-Raman) chemical characterization as well as by force volume AFM analysis. We also discuss the broader applicability and benefits of the methodology for life science research.
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Affiliation(s)
- David Rutherford
- Faculty of Electrical Engineering, Czech Technical University in Prague, Prague, Czech Republic.
| | - Kateřina Kolářová
- Institute of Physics, Czech Academy of Sciences, Prague, Czech Republic
| | - Jaroslav Čech
- Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague, Prague, Czech Republic
| | - Petr Haušild
- Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague, Prague, Czech Republic
| | - Jaroslav Kuliček
- Faculty of Electrical Engineering, Czech Technical University in Prague, Prague, Czech Republic
| | - Egor Ukraintsev
- Faculty of Electrical Engineering, Czech Technical University in Prague, Prague, Czech Republic
| | - Štěpán Stehlík
- New Technologies Research Centre, University of West Bohemia, Pilsen, Czech Republic
| | - Radek Dao
- NenoVision s. r. o., Brno, Czech Republic
| | - Jan Neuman
- NenoVision s. r. o., Brno, Czech Republic
| | - Bohuslav Rezek
- Faculty of Electrical Engineering, Czech Technical University in Prague, Prague, Czech Republic
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3
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Yoshida K, Sasaki Y, Kuwabara A, Ikuhara Y. Reliable Electrochemical Setup for in situ Observations with an Atmospheric SEM. Microscopy (Oxf) 2022; 71:311-314. [PMID: 35689557 DOI: 10.1093/jmicro/dfac028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Revised: 05/07/2022] [Accepted: 06/10/2022] [Indexed: 11/14/2022] Open
Abstract
A novel setup for the in situ observation of electrochemical reactions in liquids through atmospheric scanning electron microscopy is presented. The proposed liquid-phase electrochemical SEM system consists of a working electrode (WE) on an electrochemical chip (e-chip) and other two electrodes inserted into a liquid electrolyte; electrochemical reactions occurring at the WE are controlled precisely with an external potentiostat/galvanostat connected to the three electrodes. Copper deposition from a CuSO4 aqueous solution was conducted onto the WE, and simultaneous acquisition of nanoscale images and reliable electrochemical data was achieved with the proposed setup.
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Affiliation(s)
- Kaname Yoshida
- Nanostructures Research Laboratory, Japan Fine Ceramics Center, 2-4-1 Mutsuno, Atsuta-ku, Nagoya 456-8587, Japan
| | - Yuki Sasaki
- Nanostructures Research Laboratory, Japan Fine Ceramics Center, 2-4-1 Mutsuno, Atsuta-ku, Nagoya 456-8587, Japan
| | - Akihide Kuwabara
- Nanostructures Research Laboratory, Japan Fine Ceramics Center, 2-4-1 Mutsuno, Atsuta-ku, Nagoya 456-8587, Japan
| | - Yuichi Ikuhara
- Nanostructures Research Laboratory, Japan Fine Ceramics Center, 2-4-1 Mutsuno, Atsuta-ku, Nagoya 456-8587, Japan.,Institute of Engineering Innovation, School of Engineering, The University of Tokyo, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-8656, Japan
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4
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Sasaki Y, Hirayama S, Nakao R. Scanning Electron Microscopy of Escherichia coli Encapsulated in a Spacerized Graphene Sandwich. Microscopy (Oxf) 2022; 71:175-180. [DOI: 10.1093/jmicro/dfac010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 02/10/2022] [Accepted: 02/25/2022] [Indexed: 11/14/2022] Open
Abstract
Abstract
Electron microscopy of biological materials such as bacteria allows multifaceted analysis to understand their structure and function with high resolution, which is difficult to achieve with optical microscopy. However, the samples are damaged or broken by electron beam irradiation and by the vacuum environment. Here, we observed bacteria in a suspension encapsulated in a graphene sandwich that prevents electron beam damage without the need for fixation. Specifically, we demonstrated in situ scanning electron microscopy observation of Escherichia coli in a graphene sandwich containing a perforated membrane as a spacer, encapsulating non-immobilized E. coli between the graphene layers. However, E. coli activity, such as division, was not observed, although the irradiated cells grew slightly when re-suspended under optimal culture conditions. Our findings suggest that the graphene sandwich methodology enables the observation of wet E. coli cells by electron microscopy but requires refinement to allow the live imaging of biological materials.
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Affiliation(s)
- Yuki Sasaki
- Nanostructures Research Laboratory, Japan Fine Ceramics Center, 2-4-1 Mutsuno, Atsuta-ku, Nagoya 456-8587, Japan
| | - Satoru Hirayama
- Division of Microbiology and Infectious Diseases, Niigata University Graduate School of Medical and Dental Sciences, 2-5274, Gakkocho-dori, Chuo-ku, Niigata 951-8514, Japan
- Department of Bacteriology I, National Institute of Infectious Diseases, 1-23-1, Toyama, Shinjuku-ku, Tokyo 162-8640, Japan
| | - Ryoma Nakao
- Department of Bacteriology I, National Institute of Infectious Diseases, 1-23-1, Toyama, Shinjuku-ku, Tokyo 162-8640, Japan
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5
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Gupta T, Strelcov E, Holland G, Schumacher J, Yang Y, Esch MB, Aksyuk V, Zeller P, Amati M, Gregoratti L, Kolmakov A. Electron and X-ray Focused Beam-Induced Cross-Linking in Liquids: Toward Rapid Continuous 3D Nanoprinting and Interfacing using Soft Materials. ACS NANO 2020; 14:12982-12992. [PMID: 32935540 PMCID: PMC7986474 DOI: 10.1021/acsnano.0c04266] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Multiphoton polymer cross-linking evolves as the core process behind high-resolution additive microfabrication with soft materials for implantable/wearable electronics, tissue engineering, microrobotics, biosensing, drug delivery, etc. Electrons and soft X-rays, in principle, can offer even higher resolution and printing rates. However, these powerful lithographic tools are difficult to apply to vacuum incompatible liquid precursor solutions used in continuous additive fabrication. In this work, using biocompatible hydrogel as a model soft material, we demonstrate high-resolution in-liquid polymer cross-linking using scanning electron and X-ray microscopes. The approach augments the existing solid-state electron/X-ray lithography and beam-induced deposition techniques with a wider class of possible chemical reactions, precursors, and functionalities. We discuss the focused beam cross-linking mechanism, the factors affecting the ultimate feature size, and layer-by-layer printing possibilities. The potential of this technology is demonstrated on a few practically important applications such as in-liquid encapsulation of nanoparticles for plasmonic sensing and interfacing of viable cells with hydrogel electrodes.
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Affiliation(s)
- Tanya Gupta
- NIST, Gaithersburg, MD 20899, USA
- Maryland NanoCenter, University of Maryland, College Park, MD 20742, USA
| | - Evgheni Strelcov
- NIST, Gaithersburg, MD 20899, USA
- Maryland NanoCenter, University of Maryland, College Park, MD 20742, USA
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6
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Velasco-Velez JJ, Mom RV, Sandoval-Diaz LE, Falling LJ, Chuang CH, Gao D, Jones TE, Zhu Q, Arrigo R, Roldan Cuenya B, Knop-Gericke A, Lunkenbein T, Schlögl R. Revealing the Active Phase of Copper during the Electroreduction of CO 2 in Aqueous Electrolyte by Correlating In Situ X-ray Spectroscopy and In Situ Electron Microscopy. ACS ENERGY LETTERS 2020; 5:2106-2111. [PMID: 32551364 PMCID: PMC7296532 DOI: 10.1021/acsenergylett.0c00802] [Citation(s) in RCA: 54] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2020] [Accepted: 05/27/2020] [Indexed: 05/28/2023]
Abstract
The variation in the morphology and electronic structure of copper during the electroreduction of CO2 into valuable hydrocarbons and alcohols was revealed by combining in situ surface- and bulk-sensitive X-ray spectroscopies with electrochemical scanning electron microscopy. These experiments proved that the electrified interface surface and near-surface are dominated by reduced copper. The selectivity to the formation of the key C-C bond is enhanced at higher cathodic potentials as a consequence of increased copper metallicity. In addition, the reduction of the copper oxide electrode and oxygen loss in the lattice reconstructs the electrode to yield a rougher surface with more uncoordinated sites, which controls the dissociation barrier of water and CO2. Thus, according to these results, copper oxide species can only be stabilized kinetically under CO2 reduction reaction conditions.
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Affiliation(s)
- Juan-Jesus Velasco-Velez
- Department
of Heterogeneous Reactions, Max Planck Institute
for Chemical Energy Conversion, Mülheim an der Ruhr 45470, Germany
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
der Max-Planck-Gesellschaft, Berlin 14195, Germany
| | - Rik V. Mom
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
der Max-Planck-Gesellschaft, Berlin 14195, Germany
| | - Luis-Ernesto Sandoval-Diaz
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
der Max-Planck-Gesellschaft, Berlin 14195, Germany
| | - Lorenz J. Falling
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
der Max-Planck-Gesellschaft, Berlin 14195, Germany
| | - Cheng-Hao Chuang
- Department
of Physics, Tamkang University, New Taipei City 25137, Taiwan
| | - Dunfeng Gao
- Department
of Interface Science, Fritz-Haber-Institute
of the Max-Planck Society, 14195 Berlin, Germany
- State
Key Laboratory of Catalysis, Dalian Institute
of Chemical Physics, Chinese Academy of Sciences, 116023 Dalian, China
| | - Travis E. Jones
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
der Max-Planck-Gesellschaft, Berlin 14195, Germany
| | - Qingjun Zhu
- Department
of Heterogeneous Reactions, Max Planck Institute
for Chemical Energy Conversion, Mülheim an der Ruhr 45470, Germany
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
der Max-Planck-Gesellschaft, Berlin 14195, Germany
| | - Rosa Arrigo
- School of
Science, Engineering and Environment, University
of Salford, 314 Cockcroft
Building, M5 4 WT Manchester, U.K.
| | - Beatriz Roldan Cuenya
- Department
of Interface Science, Fritz-Haber-Institute
of the Max-Planck Society, 14195 Berlin, Germany
| | - Axel Knop-Gericke
- Department
of Heterogeneous Reactions, Max Planck Institute
for Chemical Energy Conversion, Mülheim an der Ruhr 45470, Germany
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
der Max-Planck-Gesellschaft, Berlin 14195, Germany
| | - Thomas Lunkenbein
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
der Max-Planck-Gesellschaft, Berlin 14195, Germany
| | - Robert Schlögl
- Department
of Heterogeneous Reactions, Max Planck Institute
for Chemical Energy Conversion, Mülheim an der Ruhr 45470, Germany
- Department
of Inorganic Chemistry, Fritz-Haber-Institut
der Max-Planck-Gesellschaft, Berlin 14195, Germany
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7
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Komenami T, Yoshimura A, Matsuno Y, Sato M, Sato C. Network of Palladium-Based Nanorings Synthesized by Liquid-Phase Reduction Using DMSO-H2O: In Situ Monitoring of Structure Formation and Drying Deformation by ASEM. Int J Mol Sci 2020; 21:ijms21093271. [PMID: 32380757 PMCID: PMC7247573 DOI: 10.3390/ijms21093271] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 04/28/2020] [Accepted: 04/28/2020] [Indexed: 01/01/2023] Open
Abstract
We developed a liquid-phase synthesis method for Pd-based nanostructure, in which Pd dissolved in dimethyl sulfoxide (DMSO) solutions was precipitated using acid aqueous solution. In the development of the method, in situ monitoring using atmospheric scanning electron microscopy (ASEM) revealed that three-dimensional (3D) Pd-based nanonetworks were deformed to micrometer-size particles possibly by the surface tension of the solutions during the drying process. To avoid surface tension, critical point drying was employed to dry the Pd-based precipitates. By combining ASEM monitoring with critical point drying, the synthesis parameters were optimized, resulting in the formation of lacelike delicate nanonetworks using citric acid aqueous solutions. Precipitation using HCl acid aqueous solutions allowed formation of 500-nm diameter nanorings connected by nanowires. The 3D nanostructure formation was controllable and modifiable into various shapes using different concentrations of the Pd and Cl ions as the parameters.
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Affiliation(s)
- Takuki Komenami
- Graduate School of Science and Engineering, Chiba University, Chiba 263-8522, Japan; (T.K.); (A.Y.)
| | - Akihiro Yoshimura
- Graduate School of Science and Engineering, Chiba University, Chiba 263-8522, Japan; (T.K.); (A.Y.)
| | - Yasunari Matsuno
- Graduate School of Science and Engineering, Chiba University, Chiba 263-8522, Japan; (T.K.); (A.Y.)
- Correspondence: (Y.M.); (C.S.); Tel.: +81-43-290-3467 (Y.M.); +81- 29-861-5562 (C.S.)
| | - Mari Sato
- Health and Medical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba 305-8566, Japan;
| | - Chikara Sato
- Health and Medical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba 305-8566, Japan;
- Correspondence: (Y.M.); (C.S.); Tel.: +81-43-290-3467 (Y.M.); +81- 29-861-5562 (C.S.)
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8
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Sato C, Yamazaki D, Sato M, Takeshima H, Memtily N, Hatano Y, Tsukuba T, Sakai E. Calcium phosphate mineralization in bone tissues directly observed in aqueous liquid by atmospheric SEM (ASEM) without staining: microfluidics crystallization chamber and immuno-EM. Sci Rep 2019; 9:7352. [PMID: 31089159 PMCID: PMC6517404 DOI: 10.1038/s41598-019-43608-6] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2018] [Accepted: 04/26/2019] [Indexed: 12/12/2022] Open
Abstract
The malformation and disordered remodeling of bones induce various diseases, including osteoporosis. We have developed atmospheric SEM (ASEM) to directly observe aldehyde-fixed bone tissue immersed in radical scavenger buffer without thin sectioning. The short procedure realized the observation of bone mineralization surrounded by many cells and matrices in natural aqueous buffer, decreasing the risk of changes. In osteoblast primary cultures, mineralization was visible without staining. Correlative energy dispersive X-ray spectrometry indicated the formation of calcium phosphate mineral. Fixed bone was sectioned, and the section surface was inspected by ASEM. Mineralized trabeculae of talus spongy bone were directly visible. Associated large and small cells were revealed by phosphotungstic acid staining, suggesting remodeling by bone-absorbing osteoclasts and bone-rebuilding osteoblasts. In tibia, cortical bone layer including dense grains, was bordered by many cells with protrusions. Tissue immuno-EM performed in solution for the first time and anti-cathepsin-K antibody, successfully identified osteoclasts in femur spongy bone. A microfluidics chamber fabricated on the silicon nitride film window of an ASEM dish allowed mineralization to be monitored in vitro; calcium phosphate crystals as small as 50 nm were imaged. ASEM is expected to be widely applied to study bio-mineralization and bone-remodeling, and to help diagnose bone-related diseases.
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Affiliation(s)
- Chikara Sato
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Central 6, Higashi 1-1-1, Tsukuba, Ibaraki, 305-8568, Japan.
| | - Daiju Yamazaki
- Graduate School of Pharmaceutical Sciences, and Graduate School of Medicine, Kyoto University, Yoshida Shimo Adachi, 46-29 Sakyo, Kyoto, 606-8501, Japan
| | - Mari Sato
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Central 6, Higashi 1-1-1, Tsukuba, Ibaraki, 305-8568, Japan
| | - Hiroshi Takeshima
- Graduate School of Pharmaceutical Sciences, and Graduate School of Medicine, Kyoto University, Yoshida Shimo Adachi, 46-29 Sakyo, Kyoto, 606-8501, Japan
| | - Nassirhadjy Memtily
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Central 6, Higashi 1-1-1, Tsukuba, Ibaraki, 305-8568, Japan
- Traditional Uyghur Medicine Institute of Xinjiang Medical University, 393 Xinyi Rd, Xinjiang Uyghur Autonomous Region, Urumqi, 830011, China
| | - Yuri Hatano
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Central 6, Higashi 1-1-1, Tsukuba, Ibaraki, 305-8568, Japan
| | - Takayuki Tsukuba
- Division of Dental Pharmacology, Department of Developmental and Reconstructive Medicine, Nagasaki University Graduate School of Biomedical Sciences, 1-7-1 Sakamoto, Nagasaki, 852-8588, Japan
| | - Eiko Sakai
- Division of Dental Pharmacology, Department of Developmental and Reconstructive Medicine, Nagasaki University Graduate School of Biomedical Sciences, 1-7-1 Sakamoto, Nagasaki, 852-8588, Japan
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9
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Haruta T, Ikeda Y, Konyuba Y, Fukuda T, Nishioka H. Development of novel correlative light and electron microscopy linkage system using silicon nitride film. Microscopy (Oxf) 2019; 68:189-193. [PMID: 30608592 DOI: 10.1093/jmicro/dfy145] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Revised: 11/18/2018] [Accepted: 11/29/2018] [Indexed: 11/14/2022] Open
Abstract
In this study, we investigated the optical properties of a silicon nitride (SiN) film. The thin SiN film (30 nm thick) exhibited good light transmittance and little autofluorescence and could be used as a microscope slide for optical microscopy (OM). In addition, we developed a novel correlative light and electron microscopy (CLEM) that combines OM with transmission electron microscopy (TEM) using an SiN thin film. In this system, CLEM was performed by replacing a detachable retainer with a holder for TEM and an adaptor for OM. The advantage of this method is that the same specimens can be sequentially observed using suitable OM and TEM.
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Affiliation(s)
- Tomohiro Haruta
- Application Management Department. JEOL Ltd., 3-1-2 Musashino, Akishima, Tokyo, Japan
| | - Yuta Ikeda
- 22EM business unit, JEOL Ltd., 3-1-2 Musashino, Akishima, Tokyo, Japan
| | - Yuji Konyuba
- 22EM business unit, JEOL Ltd., 3-1-2 Musashino, Akishima, Tokyo, Japan
| | - Tomohisa Fukuda
- 22EM business unit, JEOL Ltd., 3-1-2 Musashino, Akishima, Tokyo, Japan
| | - Hideo Nishioka
- Application Management Department. JEOL Ltd., 3-1-2 Musashino, Akishima, Tokyo, Japan
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10
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Sato C, Yamazawa T, Ohtani A, Maruyama Y, Memtily N, Sato M, Hatano Y, Shiga T, Ebihara T. Primary cultured neuronal networks and type 2 diabetes model mouse fatty liver tissues in aqueous liquid observed by atmospheric SEM (ASEM): Staining preferences of metal solutions. Micron 2019; 118:9-21. [PMID: 30553186 DOI: 10.1016/j.micron.2018.11.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Revised: 11/13/2018] [Accepted: 11/22/2018] [Indexed: 01/25/2023]
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11
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Kang DJ, Lee SJ, Na JE, Seong MJ, Yoon SY, Jeong YW, Ahn JP, Rhyu IJ. Atmospheric scanning electron microscopy and its applications for biological specimens. Microsc Res Tech 2018; 82:53-60. [PMID: 30575203 DOI: 10.1002/jemt.23177] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Revised: 09/26/2018] [Accepted: 10/26/2018] [Indexed: 11/10/2022]
Abstract
Scanning electron microscopy in ambient conditions (Air-SEM) was developed recently and has been used mainly for industrial applications. We assessed the potential application of Air-SEM for the analysis of biological tissues by using rat brain, kidney, human tooth, and bone. Hard tissues prepared by grinding and frozen sections were observed. Basic cytoarchitecture of bone and tooth was identified in the without heavy metal staining. Kidney tissue prepared using routine SEM methodology yielded images comparable to those of field emission (FE)-SEM. Sharpness was lower than that of FE-SEM, but foot process of podocytes was observed at high magnification. Air-SEM observation of semithin sections of kidney samples revealed glomerular basement membrane and podocyte processes, as seen using conventional SEM. Neuronal structures of soma, dendrites, axons, and synapses were clearly observed by Air-SEM with STEM detector and were comparable to conventional transmission electron microscopy images. Correlative light and electron microscopy observation of zebrafish embryos based on fluorescence microscopy and Air-SEM indicated the potential for a correlative approach. However, the image quality should be improved before becoming routine use in biomedical research.
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Affiliation(s)
- Dae Jin Kang
- Department of Anatomy, Korea University College of Medicine, Seoul, South Korea
| | - Se Jeong Lee
- Department of Anatomy, Korea University College of Medicine, Seoul, South Korea
| | - Ji Eun Na
- Department of Anatomy, Korea University College of Medicine, Seoul, South Korea
| | - Myung-Jun Seong
- Advanced R&D Team, Research Center, Charm Engineering Co., Ltd., Young-in, South Korea
| | - So Young Yoon
- Advanced R&D Team, Research Center, Charm Engineering Co., Ltd., Young-in, South Korea
| | - Young Woo Jeong
- Advanced Analysis Center, Korea Institute of Science and Technology, Seoul, South Korea
| | - Jae Pyoung Ahn
- Advanced Analysis Center, Korea Institute of Science and Technology, Seoul, South Korea
| | - Im Joo Rhyu
- Department of Anatomy, Korea University College of Medicine, Seoul, South Korea.,Division of Brain Korea 21 Plus Program for Biomedical Science, Korea University College of Medicine, Seoul, South Korea
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12
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Inoue N, Takashima Y, Suga M, Suzuki T, Nemoto Y, Takai O. Observation of wet specimens sensitive to evaporation using scanning electron microscopy. Microscopy (Oxf) 2018; 67:356-366. [PMID: 30307558 PMCID: PMC6278750 DOI: 10.1093/jmicro/dfy041] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2018] [Revised: 08/27/2018] [Accepted: 09/19/2018] [Indexed: 12/03/2022] Open
Abstract
Wet specimens are notoriously difficult to image in scanning electron microscopes (SEM) owing to evaporation from the required vacuum of the specimen chamber. Traditionally, this issue has been addressed by increasing the specimen chamber pressure. Unfortunately, observation under high specimen chamber pressure cannot prevent the initial evaporation effects. The wet cover method, where the original surface water is retained (and, therefore, considered wet), provides a way to introduce and subsequently image specimens that are sensitive to evaporation within a SEM, while preventing evaporation-related damage, and to observe interesting specimen-water interactions.
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Affiliation(s)
| | | | | | | | | | - Osamu Takai
- Materials and Surface Engineering Research Institute, Kanto Gakuin University, Odawara, Kanagawa, Japan
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13
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Konyuba Y, Haruta T, Ikeda Y, Fukuda T. Fabrication and characterization of sample-supporting film made of silicon nitride for large-area observation in transmission electron microscopy. Microscopy (Oxf) 2018; 67:367-370. [DOI: 10.1093/jmicro/dfy039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2018] [Accepted: 09/03/2018] [Indexed: 11/12/2022] Open
Affiliation(s)
- Yuji Konyuba
- JEOL Ltd., 3-1-2 Musashino, Akishima, Tokyo, Japan
| | | | - Yuta Ikeda
- JEOL Ltd., 3-1-2 Musashino, Akishima, Tokyo, Japan
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14
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Abstract
Liquid cell transmission electron microscopy (TEM) has attracted significant interest in recent years. With nanofabricated liquid cells, it has been possible to image through liquids using TEM with subnanometer resolution, and many previously unseen materials dynamics have been revealed. Liquid cell TEM has been applied to many areas of research, ranging from chemistry to physics, materials science, and biology. So far, topics of study include nanoparticle growth and assembly, electrochemical deposition and lithiation for batteries, tracking and manipulation of nanoparticles, catalysis, and imaging of biological materials. In this article, we first review the development of liquid cell TEM and then highlight progress in various areas of research. In the study of nanoparticle growth, the electron beam can serve both as the illumination source for imaging and as the input energy for reactions. However, many other research topics require the control of electron beam effects to minimize electron beam damage. We discuss efforts to understand electron beam-liquid matter interactions. Finally, we provide a perspective on future challenges and opportunities in liquid cell TEM.
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Affiliation(s)
- Hong-Gang Liao
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720;
| | - Haimei Zheng
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720; .,Department of Materials Science and Engineering, University of California, Berkeley, California 94720
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15
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Yulaev A, Guo H, Strelcov E, Chen L, Vlassiouk I, Kolmakov A. Graphene Microcapsule Arrays for Combinatorial Electron Microscopy and Spectroscopy in Liquids. ACS APPLIED MATERIALS & INTERFACES 2017; 9:26492-26502. [PMID: 28447785 PMCID: PMC5639728 DOI: 10.1021/acsami.7b02824] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Atomic-scale thickness, molecular impermeability, low atomic number, and mechanical strength make graphene an ideal electron-transparent membrane for material characterization in liquids and gases with scanning electron microscopy and spectroscopy. Here, we present a novel sample platform made of an array of thousands of identical isolated graphene-capped microchannels with high aspect ratio. A combination of a global wide field of view with high resolution local imaging of the array allows for high throughput in situ studies as well as for combinatorial screening of solutions, liquid interfaces, and immersed samples. We demonstrate the capabilities of this platform by studying a pure water sample in comparison with alkali halide solutions, a model electrochemical plating process, and beam-induced crystal growth in liquid electrolyte. Spectroscopic characterization of liquid interfaces and immersed objects with Auger and X-ray fluorescence analysis through the graphene membrane are also demonstrated.
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Affiliation(s)
- Alexander Yulaev
- Center for Nanoscale Science and Technology, National Institute of Standards and Technology (NIST) , Gaithersburg, Maryland 20899, United States
- Department of Materials Science and Engineering, University of Maryland , College Park, Maryland 20742, United States
- Maryland NanoCenter, University of Maryland , College Park, Maryland 20742, United States
| | - Hongxuan Guo
- Center for Nanoscale Science and Technology, National Institute of Standards and Technology (NIST) , Gaithersburg, Maryland 20899, United States
- Maryland NanoCenter, University of Maryland , College Park, Maryland 20742, United States
| | - Evgheni Strelcov
- Center for Nanoscale Science and Technology, National Institute of Standards and Technology (NIST) , Gaithersburg, Maryland 20899, United States
- Maryland NanoCenter, University of Maryland , College Park, Maryland 20742, United States
| | - Lei Chen
- Center for Nanoscale Science and Technology, National Institute of Standards and Technology (NIST) , Gaithersburg, Maryland 20899, United States
| | - Ivan Vlassiouk
- Oak Ridge National Laboratory , Oak Ridge, Tennessee 37831, United States
| | - Andrei Kolmakov
- Center for Nanoscale Science and Technology, National Institute of Standards and Technology (NIST) , Gaithersburg, Maryland 20899, United States
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16
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Abstract
In atmospheric scanning electron microscope (ASEM), the inverted scanning electron microscope (SEM) observes the wet sample from below, while an optical microscope observes it from above simultaneously. The ASEM sample holder has a disposable dish shape with a silicon nitride film window at the bottom. It can be coated variously for the primary-culture of substrate-sensitive cells; primary cells were cultured in a few milliliters of culture medium in a stable incubator environment. For the inverted SEM observation, cells and the excised tissue blocks were aldehyde-fixed, immersed in radical scavenger solution, and observed at minimum electron dose. Neural networking, axonal segmentation, proplatelet-formation and phagocytosis, and Fas expression in embryonic stem cells were captured by optical or fluorescence microscopy, and imaged at high resolution by gold-labeled immuno-ASEM with/without metal staining. By exploiting optical microscopy, the region of interest of organ can be found from the wide area, and the cells and organelle were successfully examined at high resolution by the following scanning electron microscopy. We successfully visualized islet of Langerhans, blood microvessels, neuronal endplate, and bacterial flora on stomach epidermal surfaces. Bacterial biofilms and the typical structural features including "leg complex" of mycoplasma were visualized by exploiting CLEM of ASEM. Based on these studies, ASEM correlative microscopy promises to allow the research of various mesoscopic-scale biological phenomena in the near future.
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17
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Han Y, Nguyen KX, Ogawa Y, Park J, Muller DA. Atomically Thin Graphene Windows That Enable High Contrast Electron Microscopy without a Specimen Vacuum Chamber. NANO LETTERS 2016; 16:7427-7432. [PMID: 27960512 DOI: 10.1021/acs.nanolett.6b03016] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Scanning electron microscopes (SEMs) require a high vacuum environment to generate and shape an electron beam for imaging; however, the vacuum conditions greatly limit the nature of specimens that can be examined. From a purely scattering physics perspective, it is not necessary to place the specimen inside the vacuum chamber-the mean free paths (MFPs) for electron scattering in air at typical SEM beam voltages are 50-100 μm. This is the idea behind the airSEM, which removes the specimen vacuum chamber from the SEM and places the sample in air. The thickness of the gas layer is less than a MFP from an electron-transparent window to preserve the shape and resolution of the incident beam, resulting in comparable imaging quality to an all-vacuum SEM. Present silicon nitride windows scatter far more strongly than the air gap and are currently the contrast and resolution limiting factor in the airSEM. Graphene windows have been used previously to wrap or seal samples in vacuum for imaging. Here we demonstrate the use of a robust bilayer graphene window for sealing the electron optics from the room environment, providing an electron transparent window with only a 2% drop in contrast. There is a 5-fold-increase in signal/noise ratio for imaging compared to multi-MFP-thick silicon nitride windows, enabling high contrast in backscattered, transmission, and surface imaging modes for the new airSEM geometry.
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Affiliation(s)
- Yimo Han
- Department of Applied and Engineering Physics, Cornell University , Ithaca, New York 14853, United States
| | - Kayla X Nguyen
- Department of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States
| | - Yui Ogawa
- Department of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States
- Institute for Materials Chemistry and Engineering, Kyushu University , Kasuga, Fukuoka 816-8580, Japan
| | - Jiwoong Park
- Department of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States
- Kavli Institute at Cornell for Nanoscale Science , Ithaca, New York 14853, United States
| | - David A Muller
- Department of Applied and Engineering Physics, Cornell University , Ithaca, New York 14853, United States
- Kavli Institute at Cornell for Nanoscale Science , Ithaca, New York 14853, United States
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18
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Sato C, Memitily N, Sato M, Yamazawa T, Sugimoto S. OM-III-3Development of atmospheric scanning electron microscope (ASEM) and its applications. Microscopy (Oxf) 2016. [DOI: 10.1093/jmicro/dfw088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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19
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Nguyen KX, Holtz ME, Richmond-Decker J, Muller DA. Spatial Resolution in Scanning Electron Microscopy and Scanning Transmission Electron Microscopy Without a Specimen Vacuum Chamber. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2016; 22:754-767. [PMID: 27452123 DOI: 10.1017/s1431927616011405] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
A long-standing goal of electron microscopy has been the high-resolution characterization of specimens in their native environment. However, electron optics require high vacuum to maintain an unscattered and focused probe, a challenge for specimens requiring atmospheric or liquid environments. Here, we use an electron-transparent window at the base of a scanning electron microscope's objective lens to separate column vacuum from the specimen, enabling imaging under ambient conditions, without a specimen vacuum chamber. We demonstrate in-air imaging of specimens at nanoscale resolution using backscattered scanning electron microscopy (airSEM) and scanning transmission electron microscopy. We explore resolution and contrast using Monte Carlo simulations and analytical models. We find that nanometer-scale resolution can be obtained at gas path lengths up to 400 μm, although contrast drops with increasing gas path length. As the electron-transparent window scatters considerably more than gas at our operating conditions, we observe that the densities and thicknesses of the electron-transparent window are the dominant limiting factors for image contrast at lower operating voltages. By enabling a variety of detector configurations, the airSEM is applicable to a wide range of environmental experiments including the imaging of hydrated biological specimens and in situ chemical and electrochemical processes.
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Affiliation(s)
- Kayla X Nguyen
- 1School of Applied and Engineering Physics,Cornell University,Ithaca,NY 14853,USA
| | - Megan E Holtz
- 1School of Applied and Engineering Physics,Cornell University,Ithaca,NY 14853,USA
| | | | - David A Muller
- 1School of Applied and Engineering Physics,Cornell University,Ithaca,NY 14853,USA
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20
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Gradov OV, Gradova MA. Methods of electron microscopy of biological and abiogenic structures in artificial gas atmospheres. SURFACE ENGINEERING AND APPLIED ELECTROCHEMISTRY 2016. [DOI: 10.3103/s1068375516010063] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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21
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Higuchi T, Konyuba Y, Nishiyama H, Suga M, Takahara A, Jinnai H. Direct observation of polyelectrolyte brushes under wet and dry conditions by atmospheric scanning electron microscopy. Microscopy (Oxf) 2015; 65:139-44. [DOI: 10.1093/jmicro/dfv357] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2015] [Accepted: 10/15/2015] [Indexed: 11/13/2022] Open
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22
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Higuchi T, Nishiyama H, Suga M, Watanabe H, Takahara A, Jinnai H. One-step nanopatterning of conjugated polymers by electron-beam-assisted electropolymerization. Microscopy (Oxf) 2015; 64:205-12. [PMID: 25825510 PMCID: PMC4711292 DOI: 10.1093/jmicro/dfv013] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2015] [Accepted: 02/23/2015] [Indexed: 11/12/2022] Open
Abstract
We propose a one-step nanopatterning method where liquid monomers are polymerized directly with an electron beam under an atmospheric pressure. The method allows precise positional control of an electron beam that induces electropolymerization based on an anodic oxidation only in the irradiated areas. Various versatile conjugated polymers, including polypyrrole, polyaniline and poly(3-hexylthiophene), have been directly polymerized from monomers without solvents and patterned by our one-step nanopatterning method. Vertically oriented arrays of nanorods several hundred nanometers in diameter with an aspect ratio (height to diameter) of around two were fabricated.
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Affiliation(s)
- Takeshi Higuchi
- Takahara Soft Interfaces Project, Exploratory Research for Advanced Technology (ERATO), Japan Science and Technology Agency (JST), 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan Institute for Materials Chemistry and Engineering (IMCE), Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | | | - Mitsuo Suga
- JEOL Ltd., 1-2 Musashino 3-chome, Akishima, Tokyo 196-8558, Japan
| | - Hirohmi Watanabe
- Takahara Soft Interfaces Project, Exploratory Research for Advanced Technology (ERATO), Japan Science and Technology Agency (JST), 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan Institute for Materials Chemistry and Engineering (IMCE), Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Atsushi Takahara
- Takahara Soft Interfaces Project, Exploratory Research for Advanced Technology (ERATO), Japan Science and Technology Agency (JST), 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan Institute for Materials Chemistry and Engineering (IMCE), Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Hiroshi Jinnai
- Takahara Soft Interfaces Project, Exploratory Research for Advanced Technology (ERATO), Japan Science and Technology Agency (JST), 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan Institute for Materials Chemistry and Engineering (IMCE), Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
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Memtily N, Okada T, Ebihara T, Sato M, Kurabayashi A, Furihata M, Suga M, Nishiyama H, Mio K, Sato C. Observation of tissues in open aqueous solution by atmospheric scanning electron microscopy: applicability to intraoperative cancer diagnosis. Int J Oncol 2015; 46:1872-82. [PMID: 25707365 PMCID: PMC4383018 DOI: 10.3892/ijo.2015.2905] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2014] [Accepted: 01/05/2015] [Indexed: 11/27/2022] Open
Abstract
In the atmospheric scanning electron microscope (ASEM), a 2- to 3-μm layer of the sample resting on a silicon nitride-film window in the base of an open sample dish is imaged, in liquid, at atmospheric pressure, from below by an inverted SEM. Thus, the time-consuming pretreatments generally required for biological samples to withstand the vacuum of a standard electron microscope are avoided. In the present study, various mouse tissues (brain, spinal cord, muscle, heart, lung, liver, kidney, spleen and stomach) were fixed, stained with heavy metals, and visualized in radical scavenger D-glucose solution using the ASEM. While some stains made the nuclei of cells very prominent (platinum-blue, phosphotungstic acid), others also emphasized cell organelles and membranous structures (uranium acetate or the NCMIR method). Notably, symbiotic bacteria were sometimes observed on stomach mucosa. Furthermore, kidney tissue could be stained and successfully imaged in <30 min. Lung and spinal cord tissue from normal mice and mice metastasized with breast cancer cells was also examined. Cancer cells present in lung alveoli and in parts of the spine tissue clearly had larger nuclei than normal cells. The results indicate that the ASEM has the potential to accelerate intraoperative cancer diagnosis, the diagnosis of kidney diseases and pathogen detection. Importantly, in the course of the present study it was possible to increase the observable tissue area by using a new multi-windowed ASEM sample dish and sliding the tissue across its eight windows.
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Affiliation(s)
- Nassirhadjy Memtily
- Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-0006, Japan
| | - Tomoko Okada
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki 305-8568, Japan
| | - Tatsuhiko Ebihara
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki 305-8568, Japan
| | - Mari Sato
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki 305-8568, Japan
| | - Atsushi Kurabayashi
- Department of Pathology, Kochi Medical School, University of Kochi, Nankoku, Kochi 783-8505, Japan
| | - Mutsuo Furihata
- Department of Pathology, Kochi Medical School, University of Kochi, Nankoku, Kochi 783-8505, Japan
| | - Mitsuo Suga
- Advanced Technology Division, JEOL Ltd., Akishima, Tokyo 196‑8558, Japan
| | | | - Kazuhiro Mio
- Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-0006, Japan
| | - Chikara Sato
- Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-0006, Japan
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24
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Ominami Y, Kawanishi S, Ushiki T, Ito S. A novel approach to scanning electron microscopy at ambient atmospheric pressure. Microscopy (Oxf) 2014; 64:97-104. [PMID: 25537435 DOI: 10.1093/jmicro/dfu107] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2014] [Accepted: 11/19/2014] [Indexed: 11/13/2022] Open
Abstract
Scanning electron microscopy (SEM) for observing samples at ambient atmospheric pressure is introduced in this study. An additional specimen chamber with a small window is inserted in the main specimen chamber, and the window is separated with a thin membrane or diaphragm allowing electron beam propagation. Close proximity of the sample to the membrane enables the detection of back-scattered electrons sufficient for imaging. In addition to the empirical imaging data, a probability analysis of the un-scattered fraction of the incident electron beam further supports the feasibility of atmospheric SEM imaging over a controlled membrane-sample distance.
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Affiliation(s)
- Yusuke Ominami
- Hitachi High-Technologies Corporation, Hitachinaka, Ibaraki 312-8504, Japan
| | - Shinsuke Kawanishi
- Hitachi High-Technologies Corporation, Hitachinaka, Ibaraki 312-8504, Japan
| | - Tatsuo Ushiki
- Niigata University Graduate School of Medical and Dental Sciences, Niigata city 951-9510, Japan
| | - Sukehiro Ito
- Hitachi High-Technologies Corporation, Hitachinaka, Ibaraki 312-8504, Japan
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25
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Shibata S, Komaki Y, Seki F, Inouye MO, Nagai T, Okano H. Connectomics: comprehensive approaches for whole-brain mapping. Microscopy (Oxf) 2014; 64:57-67. [DOI: 10.1093/jmicro/dfu103] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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26
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Atmospheric scanning electron microscope system with an open sample chamber: Configuration and applications. Ultramicroscopy 2014; 147:86-97. [DOI: 10.1016/j.ultramic.2014.06.001] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2013] [Revised: 05/23/2014] [Accepted: 06/07/2014] [Indexed: 02/04/2023]
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27
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Ueda S, Kobayashi Y, Koizumi S, Tsutsumi Y. In situobservation of water in a fuel cell catalyst using scanning electron microscopy. Microscopy (Oxf) 2014; 64:87-96. [DOI: 10.1093/jmicro/dfu100] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2014] [Accepted: 10/27/2014] [Indexed: 11/13/2022] Open
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28
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Hirano K, Kinoshita T, Uemura T, Motohashi H, Watanabe Y, Ebihara T, Nishiyama H, Sato M, Suga M, Maruyama Y, Tsuji NM, Yamamoto M, Nishihara S, Sato C. Electron microscopy of primary cell cultures in solution and correlative optical microscopy using ASEM. Ultramicroscopy 2014; 143:52-66. [DOI: 10.1016/j.ultramic.2013.10.010] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2013] [Revised: 10/09/2013] [Accepted: 10/10/2013] [Indexed: 10/26/2022]
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Abstract
An understanding of nanocrystal growth mechanisms is of significant importance for the design of novel materials. The development of liquid cells for transmission electron microscopy (TEM) has enabled direct observation of nanoparticle growth in a liquid phase. By tracking single particle growth trajectories with high spatial resolution, novel growth mechanisms have been revealed. In recent years, there has been an increasing interest in liquid cell TEM and its applications include real time imaging of nanoparticles, biological materials, liquids, and so on. This paper reviews the development of liquid cell TEM and the progress made in using such a wonderful tool to study the growth of nanoparticles (mostly metal nanoparticles). Achievements in the understanding of coalescence, shape control mechanisms, surfactant effects, etc. are highlighted. Other studies relevant to metal precipitation in liquids, such as electrochemical deposition, nanoparticle motion and electron beam effects, are also included. At the end, our perspectives on future challenges and opportunities in liquid cell TEM are provided.
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Affiliation(s)
- Hong-Gang Liao
- Materials Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA.
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30
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Suga M, Asahina S, Sakuda Y, Kazumori H, Nishiyama H, Nokuo T, Alfredsson V, Kjellman T, Stevens SM, Cho HS, Cho M, Han L, Che S, Anderson MW, Schüth F, Deng H, Yaghi OM, Liu Z, Jeong HY, Stein A, Sakamoto K, Ryoo R, Terasaki O. Recent progress in scanning electron microscopy for the characterization of fine structural details of nano materials. PROG SOLID STATE CH 2014. [DOI: 10.1016/j.progsolidstchem.2014.02.001] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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31
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Bhattacharya D, Bosman M, Mokkapati VRSS, Leong FY, Mirsaidov U. Nucleation dynamics of water nanodroplets. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2014; 20:407-415. [PMID: 24667092 DOI: 10.1017/s1431927614000476] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The origin of the condensation of water begins at the nanoscale, a length-scale that is challenging to probe for liquids. In this work we directly image heterogeneous nucleation of water nanodroplets by in situ transmission electron microscopy. Using gold nanoparticles bound to a flat surface as heterogeneous nucleation sites, we observe nucleation and growth of water nanodroplets. The growth of nanodroplet radii follows the power law: R(t)~(t-t 0) β , where β~0.2-0.3.
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Affiliation(s)
- Dipanjan Bhattacharya
- 1 Center for BioImaging Sciences, Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore 117543, Singapore
| | - Michel Bosman
- 3 Institute of Materials Research and Engineering, A*Star (Agency for Science and Technology), 3 Research Link, Singapore 117602, Singapore
| | - Venkata R S S Mokkapati
- 4 Nanotechnology Research and Application Center, Sabanci University, Orhanlı, Tuzla, İstanbul 34956, Turkey
| | - Fong Yew Leong
- 5 Institute of High Performance Computing, A*Star, 1 Fusionopolis Way, Singapore 138632, Singapore
| | - Utkur Mirsaidov
- 1 Center for BioImaging Sciences, Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore 117543, Singapore
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32
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Kinoshita T, Mori Y, Hirano K, Sugimoto S, Okuda KI, Matsumoto S, Namiki T, Ebihara T, Kawata M, Nishiyama H, Sato M, Suga M, Higashiyama K, Sonomoto K, Mizunoe Y, Nishihara S, Sato C. Immuno-electron microscopy of primary cell cultures from genetically modified animals in liquid by atmospheric scanning electron microscopy. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2014; 20:469-483. [PMID: 24564988 DOI: 10.1017/s1431927614000178] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
High-throughput immuno-electron microscopy is required to capture the protein-protein interactions realizing physiological functions. Atmospheric scanning electron microscopy (ASEM) allows in situ correlative light and electron microscopy of samples in liquid in an open atmospheric environment. Cells are cultured in a few milliliters of medium directly in the ASEM dish, which can be coated and transferred to an incubator as required. Here, cells were imaged by optical or fluorescence microscopy, and at high resolution by gold-labeled immuno-ASEM, sometimes with additional metal staining. Axonal partitioning of neurons was correlated with specific cytoskeletal structures, including microtubules, using primary-culture neurons from wild type Drosophila, and the involvement of ankyrin in the formation of the intra-axonal segmentation boundary was studied using neurons from an ankyrin-deficient mutant. Rubella virus replication producing anti-double-stranded RNA was captured at the host cell's plasma membrane. Fas receptosome formation was associated with clathrin internalization near the surface of primitive endoderm cells. Positively charged Nanogold clearly revealed the cell outlines of primitive endoderm cells, and the cell division of lactic acid bacteria. Based on these experiments, ASEM promises to allow the study of protein interactions in various complexes in a natural environment of aqueous liquid in the near future.
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Affiliation(s)
- Takaaki Kinoshita
- 1 Laboratory of Cell Biology, Department of Bioinformatics, Faculty of Engineering, Soka University, 1-236 Tangi-machi, Hachioji, Tokyo 192-8577, Japan
| | - Yosio Mori
- 2 Department of Virology III, National Institute of Infectious Diseases, 4-7-1 Gakuen, Musashimurayama-shi, Tokyo 208-0011, Japan
| | - Kazumi Hirano
- 1 Laboratory of Cell Biology, Department of Bioinformatics, Faculty of Engineering, Soka University, 1-236 Tangi-machi, Hachioji, Tokyo 192-8577, Japan
| | - Shinya Sugimoto
- 3 Department of Bacteriology, The Jikei University School of Medicine, Tokyo 105-8461, Japan
| | - Ken-ichi Okuda
- 3 Department of Bacteriology, The Jikei University School of Medicine, Tokyo 105-8461, Japan
| | - Shunsuke Matsumoto
- 4 Division of Structural Biology, Medical Institute of Bioregulation, Kyushu University, Fukuoka 812-8581, Japan
| | - Takeshi Namiki
- 5 Suntory Global Innovation Center, Research Institute, 5-2-5 Yamazaki, Shimamoto-cho, Mishima-gun, Osaka 618-0001, Japan
| | - Tatsuhiko Ebihara
- 6 Biomedical Research Institute and Information Technology Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan
| | - Masaaki Kawata
- 6 Biomedical Research Institute and Information Technology Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan
| | | | - Mari Sato
- 6 Biomedical Research Institute and Information Technology Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan
| | - Mitsuo Suga
- 7 JEOL Ltd., 1-2 Musashino 3-chome, Akishima, Tokyo 196-8558, Japan
| | - Kenichi Higashiyama
- 5 Suntory Global Innovation Center, Research Institute, 5-2-5 Yamazaki, Shimamoto-cho, Mishima-gun, Osaka 618-0001, Japan
| | - Kenji Sonomoto
- 8 Laboratory of Microbial Technology, Department of Bioscience and Biotechnology, Division of Applied Molecular Microbiology and Biomass Chemistry, Faculty of Agriculture, Kyushu University, Fukuoka 812-8581, Japan
| | - Yoshimitsu Mizunoe
- 3 Department of Bacteriology, The Jikei University School of Medicine, Tokyo 105-8461, Japan
| | - Shoko Nishihara
- 1 Laboratory of Cell Biology, Department of Bioinformatics, Faculty of Engineering, Soka University, 1-236 Tangi-machi, Hachioji, Tokyo 192-8577, Japan
| | - Chikara Sato
- 6 Biomedical Research Institute and Information Technology Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan
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Nawa Y, Inami W, Miyake A, Ono A, Kawata Y, Lin S, Terakawa S. Dynamic autofluorescence imaging of intracellular components inside living cells using direct electron beam excitation. BIOMEDICAL OPTICS EXPRESS 2014; 5:378-86. [PMID: 24575334 PMCID: PMC3920870 DOI: 10.1364/boe.5.000378] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2013] [Revised: 12/19/2013] [Accepted: 12/21/2013] [Indexed: 05/29/2023]
Abstract
We developed a high-resolution fluorescence microscope in which fluorescent materials are directly excited using a focused electron beam. Electron beam excitation enables detailed observations on the nanometer scale. Real-time live-cell observation is also possible using a thin film to separate the environment under study from the vacuum region required for electron beam propagation. In this study, we demonstrated observation of cellular components by autofluorescence excited with a focused electron beam and performed dynamic observations of intracellular granules. Since autofluorescence is associated with endogenous substances in cells, this microscope can also be used to investigate the intrinsic properties of organelles.
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Affiliation(s)
- Yasunori Nawa
- Graduate School of Science and Technology, Shizuoka University, Johoku, Naka, Hamamatsu 4328561, Japan
- Research Fellow of the Japan Society for the Promotion of Science, Chiyoda, Tokyo 102-0083, Japan
| | - Wataru Inami
- Faculty of Engineering, Shizuoka University, Johoku, Naka, Hamamatsu 4328561, Japan
- CREST, Japan Science and Technology Agency, Japan
| | - Aki Miyake
- Faculty of Engineering, Shizuoka University, Johoku, Naka, Hamamatsu 4328561, Japan
- CREST, Japan Science and Technology Agency, Japan
| | - Atsushi Ono
- CREST, Japan Science and Technology Agency, Japan
- Research Institute of Electronics, Shizuoka University, Johoku, Naka, Hamamatsu 4328011, Japan
| | - Yoshimasa Kawata
- Graduate School of Science and Technology, Shizuoka University, Johoku, Naka, Hamamatsu 4328561, Japan
- Faculty of Engineering, Shizuoka University, Johoku, Naka, Hamamatsu 4328561, Japan
- CREST, Japan Science and Technology Agency, Japan
- Research Institute of Electronics, Shizuoka University, Johoku, Naka, Hamamatsu 4328011, Japan
| | - Sheng Lin
- Faculty of Engineering, Shizuoka University, Johoku, Naka, Hamamatsu 4328561, Japan
| | - Susumu Terakawa
- CREST, Japan Science and Technology Agency, Japan
- Photon Medical Research Center, Hamamatsu University School of Medicine, Handayama, Higashi, Hamamatsu 4313192, Japan
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MOTOYAMA M, EJIRI M, IRIYAMA Y. In-Situ Electron Microscope Observations of Electrochemical Li Deposition/Dissolution with a LiPON Electrolyte. ELECTROCHEMISTRY 2014. [DOI: 10.5796/electrochemistry.82.364] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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HIGUCHI T, MURAKAMI D, NISHIYAMA H, SUGA M, TAKAHARA A, JINNAI H. Nanometer-scale Real-space Observation and Material Processing for Polymer Materials under Atmospheric Pressure: Application of Atmospheric Scanning Electron Microscopy. ELECTROCHEMISTRY 2014. [DOI: 10.5796/electrochemistry.82.359] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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Nishiyama H, Teramoto K, Suga M, Sato C. Positively charged nanogold label allows the observation of fine cell filopodia and flagella in solution by atmospheric scanning electron microscopy. Microsc Res Tech 2013; 77:153-60. [PMID: 24343867 DOI: 10.1002/jemt.22322] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2013] [Revised: 11/04/2013] [Accepted: 11/16/2013] [Indexed: 11/10/2022]
Abstract
Optical microscopy is generally the first choice to observe microbes and cells. However, its resolution is not always sufficient to reveal specific target structures, such as flagella and pili, which are only nanometers wide. ASEM is an attractive higher resolution alternative, as the sample is observed in aqueous solution at atmospheric pressure. Sample pretreatment for ASEM only comprises simple tasks including fixation, gold labeling, and reagent exchange, taking less than 1 h in total. The lengthy sample pretreatments often required for more classical electron microscopies, such as embedding and dehydration, are unnecessary, and native morphology is preserved. In this study, positively charged nanogold particles were used to label the surfaces of bacteria and cultured animal cells, exploiting their net negative surface charge. After gold enhancement to increase the size of the nanogold particles, ASEM imaging of the bacteria in aqueous solution revealed pili and delicate spiral flagella. This natural shape contrasts starkly with images of dried flagella recorded by standard SEM. Positively charged nanogold labeled the plasma membrane of cultured COS7 cells, and after enhancement allowed filopodia as thin as 100 nm in diameter to be clearly visualized. Based on these studies, ASEM combined with positively charged nanogold labeling promises to become an important tool for the study of cell morphology and dynamics in the near future.
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Affiliation(s)
- Hidetoshi Nishiyama
- SM Technical Development Department, SM Business Unit, JEOL Ltd., 1-2 Musashino 3-chome, Akishima, Tokyo, 196-8558, Japan
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Murai T, Sato M, Nishiyama H, Suga M, Sato C. Ultrastructural analysis of nanogold-labeled cell surface microvilli in liquid by atmospheric scanning electron microscopy and their relevance in cell adhesion. Int J Mol Sci 2013; 14:20809-19. [PMID: 24135874 PMCID: PMC3821644 DOI: 10.3390/ijms141020809] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2013] [Revised: 10/06/2013] [Accepted: 10/07/2013] [Indexed: 01/07/2023] Open
Abstract
The adhesion of leukocytes circulating in the blood to vascular endothelium is critical for their trafficking in the vasculature, and CD44 is an important cell surface receptor for rolling adhesion. In this study, we demonstrate the correlative observation of CD44 distribution at the lymphocyte cell surface in liquid by fluorescence optical microscopy and immuno-electron microscopy using an atmospheric scanning electron microscope (ASEM). The ultrastructure of the cell surface was clearly imaged by ASEM using positively charged Nanogold particles. ASEM analysis demonstrated microvilli projections around the cell surface and the localization of CD44 on the microvilli. Treatment of cells with cytochalasin D resulted in a loss of the microvilli projections and concomitantly abrogated CD44-mediated adhesion to its ligand hyaluronan. These results suggest the functional relevance of microvilli in CD44-mediated rolling adhesion under shear flow.
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Affiliation(s)
- Toshiyuki Murai
- Department of Microbiology and Immunology, Graduate School of Medicine, Osaka University, 2-2 Yamada-oka, Suita, Osaka 565-0871, Japan
| | - Mari Sato
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Higashi 1-1-1, Tsukuba, Ibaraki 305-8568, Japan; E-Mails: (M.S.); (C.S.)
| | - Hidetoshi Nishiyama
- Advanced Technology Division, JEOL Ltd., Akishima, Tokyo 196-8558, Japan; E-Mails: (H.N.); (M.S.)
| | - Mitsuo Suga
- Advanced Technology Division, JEOL Ltd., Akishima, Tokyo 196-8558, Japan; E-Mails: (H.N.); (M.S.)
| | - Chikara Sato
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Higashi 1-1-1, Tsukuba, Ibaraki 305-8568, Japan; E-Mails: (M.S.); (C.S.)
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Jensen E, Købler C, Jensen P, Mølhave K. In-situ SEM microchip setup for electrochemical experiments with water based solutions. Ultramicroscopy 2013; 129:63-9. [DOI: 10.1016/j.ultramic.2013.03.002] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2012] [Revised: 02/25/2013] [Accepted: 03/01/2013] [Indexed: 01/08/2023]
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Akita M, Tanaka K, Murai N, Matsumoto S, Fujita K, Takaki T, Nishiyama H. Detection of CD133 (prominin-1) in a human hepatoblastoma cell line (HuH-6 clone 5). Microsc Res Tech 2013; 76:844-52. [PMID: 23712466 PMCID: PMC3842112 DOI: 10.1002/jemt.22237] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2012] [Accepted: 05/05/2013] [Indexed: 12/24/2022]
Abstract
We examined CD133 distribution in a human hepatoblastoma cell line (HuH-6 clone 5). We directly observed the cultured cells on a pressure-resistant thin film (silicon nitride thin film) in a buffer solution by using the newly developed atmospheric scanning electron microscope (ASEM), which features an open sample dish with a silicon nitride thin film window at its base, through which the scanning electron microscope beam scans samples in solution, from below. The ASEM enabled observation of the ventral cell surface, which could not be observed using standard SEM. However, observation of the dorsal cell surface was difficult with the ASEM. Therefore, we developed a new method to observe the dorsal side of cells by using Aclar® plastic film. In this method, cells are cultured on Aclar plastic film and the dorsal side of cells is in contact with the thin silicon nitride film of the ASEM dish. A preliminary study using the ASEM showed that CD133 was mainly localized in membrane ruffles in the peripheral regions of the cell. Standard transmission electron microscopy and scanning electron microscopy revealed that CD133 was preferentially concentrated in a complex structure comprising filopodia and the leading edge of lamellipodia. We also observed co-localization of CD133 with F-actin. An antibody against CD133 decreased cell migration. Methyl-β-cyclodextrin treatment decreased cell adhesion as well as lamellipodium and filopodium formation. A decrease in the cholesterol level may perturb CD133 membrane localization. The results suggest that CD133 membrane localization plays a role in tumor cell adhesion and migration.
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Affiliation(s)
- Masumi Akita
- Division of Morphological Science, Biomedical Research Center, Saitama Medical University, Iruma-gun, Saitama, Japan.
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Sato C, Nishiyama H, Suga M, Sato M, Ebihara T. [Immuno-EM in solution using the Atmospheric Scanning Electron Microscope (ASEM)]. Nihon Yakurigaku Zasshi 2013; 141:245-50. [PMID: 23665554 DOI: 10.1254/fpj.141.245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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LUO P, MORRISON I, DUDKIEWICZ A, TIEDE K, BOYES E, O’TOOLE P, PARK S, BOXALL A. Visualization and characterization of engineered nanoparticles in complex environmental and food matrices using atmospheric scanning electron microscopy. J Microsc 2013; 250:32-41. [DOI: 10.1111/jmi.12014] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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42
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Jinnai H, Tsuchiya T, Motoki S, Kaneko T, Higuchi T, Takahara A. Transmission electron microtomography in soft materials. Microscopy (Oxf) 2012. [DOI: 10.1093/jmicro/dfs070] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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43
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Immuno EM–OM correlative microscopy in solution by atmospheric scanning electron microscopy (ASEM). J Struct Biol 2012; 180:259-70. [DOI: 10.1016/j.jsb.2012.08.006] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2012] [Revised: 08/01/2012] [Accepted: 08/07/2012] [Indexed: 12/12/2022]
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Direct observation of protein microcrystals in crystallization buffer by atmospheric scanning electron microscopy. Int J Mol Sci 2012; 13:10553-10567. [PMID: 22949879 PMCID: PMC3431877 DOI: 10.3390/ijms130810553] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Revised: 08/02/2012] [Accepted: 08/03/2012] [Indexed: 11/17/2022] Open
Abstract
X-ray crystallography requires high quality crystals above a given size. This requirement not only limits the proteins to be analyzed, but also reduces the speed of the structure determination. Indeed, the tertiary structures of many physiologically important proteins remain elusive because of the so-called "crystallization bottleneck". Once microcrystals have been obtained, crystallization conditions can be optimized to produce bigger and better crystals. However, the identification of microcrystals can be difficult due to the resolution limit of optical microscopy. Electron microscopy has sometimes been utilized instead, with the disadvantage that the microcrystals usually must be observed in vacuum, which precludes the usage for crystal screening. The atmospheric scanning electron microscope (ASEM) allows samples to be observed in solution. Here, we report the use of this instrument in combination with a special thin-membrane dish with a crystallization well. It was possible to observe protein crystals of lysozyme, lipase B and a histone chaperone TAF-Iβ in crystallization buffers, without the use of staining procedures. The smallest crystals observed with ASEM were a few μm in width, and ASEM can be used with non-transparent solutions. Furthermore, the growth of salt crystals could be monitored in the ASEM, and the difference in contrast between salt and protein crystals made it easy to distinguish between these two types of microcrystals. These results indicate that the ASEM could be an important new tool for the screening of protein microcrystals.
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JINNAI H. Recent Advances in Multi-Scale Tomographic Techniques in Polymer Research. KOBUNSHI RONBUNSHU 2012. [DOI: 10.1295/koron.69.358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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