Distribution of indicator bacteria in Canyon Lake, California

Genome Analysis of Enterobacter asburiae and Lelliottia spp. Proliferating in Oligotrophic Drinking Water Reservoirs and Lakes

Surface waters are one of the main sources for drinking water production, and thus microbial contamination should be as minimal as possible. However, high concentrations of coliform bacteria were detected in reservoirs and lakes used for drinking water production during summer months due to autochthonous proliferation processes. Here, we present the genomic analyses of 17 strains of Enterobacter asburiae and Lelliottia spp. proliferating in reservoirs and lakes with special focus on the hygienic relevance, antibiotic resistance, and adaptations to the oligotrophic environments. The genomes contain neither genes for the type III secretion system nor cytotoxins or hemolysins, which are considered typical virulence factors. Examination of antibiotic resistance genes revealed mainly efflux pumps and β-lactamase class C (ampC) genes. Phenotypically, single isolates of Enterobacter asburiae showed resistance to fosfomycin and ceftazidime. The genome analyses further suggest adaptations to oligotrophic and changing environmental conditions in reservoirs and lakes, e.g., genes to cope with low nitrate and phosphate levels and the ability to utilize substances released by algae, like amino acids, chitin, alginate, rhamnose, and fucose. This leads to the hypothesis that the proliferation of the coliform bacteria could occur at the end of summer due to algae die-off. IMPORTANCE Certain strains of coliform bacteria have been shown to proliferate in the oligotrophic water of drinking water reservoirs and lakes, reaching values above 10⁴ per 100 mL. Such high concentrations challenge drinking water treatment, and occasionally the respective coliform bacteria have been detected in the treated drinking water. Thus, the question of their hygienic relevance is of high importance for water suppliers and authorities. Our genomic analyses suggest that the strains are not hygienically relevant, as typical virulence factors are absent and antibiotic resistance genes in the genomes most likely are of natural origin. Furthermore, their presence in the water is not related to fecal contamination. The proliferation in reservoirs and lakes during stable summer stratification is an autochthonic process of certain E. asburiae and Lelliottia strains that are well adapted to the surrounding oligotrophic environment.

Depth-Dependent Concentrations of E. coli in Agricultural Irrigation Ponds

Microbial water quality surveys of irrigation sources are conducted by measuring the concentrations of generic E. coli. The objective of this study was to evaluate the dependence of E. coli concentrations on the water sampling depth at different times of the day. Three irrigation ponds were sampled in Maryland eleven times during the growing seasons of 2019–2021. Water was collected in replicates at the surface (0 cm) and then in 50 cm depth intervals at 9:00, 12:00, and 15:00. Ponds 1 and 2 were sampled to 150 cm, whereas Pond 3 was only sampled to the 50 cm depth due to it having a shallower average depth. An analysis of variance test revealed that E. coli concentrations significantly differed by depth in only one pond (p > 0.05) but on multiple dates. Additionally, the sampling time of day was significant at only two of eleven of the observation dates across ponds; in those cases, the average concentrations across the pond increased in the order of 9:00 > 12:00 > 15:00. This study shows that E. coli concentrations measured in irrigation ponds may substantially differ depending on the sampling depth and time of day, and that these factors should be accounted for in the monitoring design.

A preliminary evaluation of microbial water quality in the irrigation pond

This study aimed to determine the microbial water quality of Imrahor Pond by enumerating the coliform bacteria levels in the area. Water samples were collected biweekly from the surface and bottom waters at seven points in the pond. Samples were analyzed for total coliforms, Escherichia coli, physicochemical parameters (water temperature, conductivity, pH, turbidity, dissolved oxygen, nitrate) and 1-day rainfall. The average values of TC and E. coli were 1487.4 and 36.3 MPN/100 ml, respectively. TC concentrations/physicochemical parameters were met at least 2nd class water quality class and E. coli results were met "guideline value" (E. coli < 250 MPN/100 ml) of national regulation. Overall, among measured physicochemical parameters, rainfall had the strongest positive correlation (r = 0.377 for total coliforms and r = 0.466 for E. coli, p < 0.05) with both indicators, indicted that surface runoff due to rainfall is the main factor which effects microbial water quality in the study area. This study demonstrated the preliminary microbial water quality results (TC and E. coli) in the Imrahor Pond and can serve as a basis for developing more precise water quality monitoring and management studies in the future. PRACTITIONER POINTS: Prevalence of TC and E. coli in the surface and bottom waters of Imrahor Pond were investigated for the first time. Imrahor Pond was met guideline value of national regulations based on E. coli concentrations, in the study period. Surface runoff after rainfall was the main environmental factor which influenced the microbial water quality of the pond.

Quality of sources of drinking water and health among the hill tribe people of northern Thailand

Poor-quality drinking water can cause numerous health problems, particularly for people who are living with poor economic conditions, have a low educational status and have limited access to safe drinking water, such as the hill tribe people in Thailand. This study aimed to assess the quality of different sources of natural drinking water from the hill tribe villages in northern Thailand. Seventy-two drinking water samples from the hill tribe villages were collected and tested for biological, chemical and physical qualities, which were compared with the standard parameter values for safe drinking water according to the World Health Organization. Total coliform bacteria and fecal coliform bacteria, which represented the biological parameters, were detected in all samples. The physical parameters, which consisted of turbidity (36.1%), iron content (5.5%), color (2.7%) and pH (2.7%), exceeded the standard indications. However, the hazard quotient and hazard index values were less than 1. The hill tribe people are facing the problem of poor-quality drinking water, particularly in terms of biological and physical parameters that exceed the standard values. An effective program for improving access to safe water for the hill tribe people should be developed and implemented immediately.

Temporal changes in water quality index of polluted lagoon ecosystems: a case study on the Küçükçekmece Lagoon

For lagoon ecosystems, it is crucial to conduct long-term monitoring of the water quality parameters and predict their potential effects. This study aimed to analyse the changes in the water quality index (WQI) profile of the Küçükçekmece Lagoon in Istanbul, Turkey, which has been facing ecological problems, and determine the increased stress in aquatic biota due to different pollutants. To begin, the sampling data were obtained from the Küçükçekmece Lagoon throughout a 13-month period in 2018-2019. The estimated WQI values were compared to studies conducted in the same study area within the last 20 years. Then, the relationship between the acute toxicity of surface waters, which is the recommended parameter for analyses in this field, and the WQI was determined. Although the water class has generally been defined as 'good quality' (WQI = 86), the study found it to be 'very poor quality' (WQI = 112 and 97, respectively) with bloom events and toxicity effects in spring and autumn. When compared with the WQIs calculated from the last 20 years, a significant improvement in water quality at station L1 (decreased from WQI = 288 to WQI = 161) and a deterioration at station L2 (increased from WQI = 71 to WQI = 100) were observed. The acute toxicity and water quality classes were highly positively correlated (r = 0.773; p < 0.01). The method, used for the first time in this area, was able to interpret the acute toxicity of lagoon surface waters and WQI data. Furthermore, the use of this method was recommended for rapid analysis of the increased stress in aquatic biota.

Survey of water supply and assessment of groundwater quality in the suburban communes of Selembao and Kimbanseke, Kinshasa in Democratic Republic of the Congo

In many suburban municipalities of developing countries, the household drinking water comes mainly from groundwater including, wells, streams and springs. These sources are vulnerable because poor hygienic conditions and sanitation prevail causing persistence and recurrent waterborne diseases. In this research, a survey study on water resource use and an epidemiological survey of waterborne diseases were conducted among users of water points and medical institutions in suburban communes of Selembao and Kimbanseke (Kinshasa, the Democratic Republic of the Congo). In addition, physicochemical (temperature, pH, O₂, electrical conductivity, and soluble ions: Na⁺, K⁺, PO₄ ^3-, SO₄ ^2-, NO₃ ^-, NO₂ ^-) and bacteriological (FIB: faecal indicator bacteria) analyses of water from 21 wells and springs were performed according to the seasonal variations. FIB included Escherichia coli (E. coli), Enterococcus and Total Coliforms. The survey results indicate that more than 75% of the patients admitted to local medical institutions between 2016 and 2019 are affected by waterborne diseases, including typhoid fever, amoebic dysentery, diarrhoea, gastroenteritis disorders and cholera. Except for NO₃ ^- in some sites, the water physicochemical parameter values are within WHO permissible limits for drinking/domestic water quality. On the contrary, the results revealed high FIB levels in water from unmanaged wells and springs during rainy and dry seasons. The microbiological pollution was significantly higher in the rainy season compared to the dry season. Interestingly, no FIB contamination was observed in water samples from managed/developed wells. The results from this study will guide local government decisions on improving water quality to prevent recurrent waterborne diseases.

Research on the Application of Typical Biological Chain for Algal Control in Lake Ecological Restoration—A Case Study of Lianshi Lake in Yongding River

Maintaining the health of lake ecosystems is an urgent issue. However, eutrophication seriously affects lakes’ ecological functions. Eutrophication is also the main target of lake ecological restoration. It is vital to carry out research on lake eutrophication control and energy flow evaluation in ecosystems scientifically. Based on in situ survey results for the aquatic life data for Lianshi Lake from 2018 to 2019, the Ecopath model was used to establish an evaluation index system for the typical biological chain to screen out the key species in the water ecosystem, and the fuzzy comprehensive evaluation (FCE) method was used to screen all the biological chains controlling algae. A combination of the FCE coupled with the Ecopath screening method for typical biological chains for algal control was applied to the Lianshi Lake area; the results show that the typical biological chain for algal control is phytoplankton (Phyt)–zooplankton (Zoop)–macrocrustaceans (Macc)–other piscivorous (OthP). Upon adjusting the biomass of Zoop and Macc in the typical biological chain for algal control to three times that of the current status, the ecological nutrition efficiency of Phyt was increased from 0.308 to 0.906. The material flow into the second trophic level from primary producers increased from 3043 to 8283 t/km2/year. The amount of detritus flowing into primary producers for sedimentation decreased from 7618 to 2378 t/km2/year. Finally, the total primary production/total respiratory volume (TPP/TR) decreased from 9.224 to 3.403, the Finn’s cycle index (FCI) increased from 13.6% to 17.5%, and the Finn’s average energy flow path length (FCL) increased from 2.854 to 3.410. The results suggest that the problem of eutrophication can be solved by introducing Zoop (an algal predator) and Macc to a large extent, resulting in improved ecosystem maturity. The research results can facilitate decision making for the restoration of urban lake water ecosystems.

Climate and Land Use Influences on Bacteria Levels in Stormwater

The influence of climatic variables and land use on fecal coliform (FC) levels in stormwater collected from outfalls throughout southern Vancouver Island between 1995 and 2011 are examined through statistical analyses, Fourier analysis, Multiple Linear Regression (LR) and Multivariate Logistic Regression (MLR). Kendall’s τ-b demonstrated that FC levels were significantly and positively correlated with the amount of residential area within a drainage catchment generating the runoff, and that FC levels were location dependent. Climatic variables of temperature and antecedent dry period length were significantly and positively correlated with FC levels at both the sampling location level and across the region overall. Precipitation and flowrates were negatively correlated with FC levels. Fourier analysis showed that monthly FC levels shared the same 12 month cycle (peaking in July) as precipitation and temperature. MLR modelling was applied by aggregating the LogFC data by order of magnitude. The MLR model shows that the data are subject to different influences depending on the season and as well, the month of the year. The land use and climate analyses suggest that future climate change impact studies attempted on nearshore bacterial water quality should be conducted at the urban catchment scale.

Spatial and temporal variability of bacterial indicators and pathogens in six California reservoirs during extreme drought

California has one of the largest systems of surface water reservoirs in the world, providing irrigation water to California's agriculturally productive Central Valley. Irrigation water is recognized as a vehicle for the microbial contamination of raw produce and must be monitored according to new federal regulation. The purpose of this study was to further understanding of the variability of fecal indicator bacteria (Escherichia coli and fecal coliforms) and pathogens (E. coli O157:H7 (O157), non-O157 Shiga toxin-producing E. coli (STEC) and Salmonella) along both horizontal and vertical profiles within California reservoirs. Monthly sampling was conducted in six reservoirs located in the foothills of the Western Sierra Nevada during the summer irrigation season and extreme drought conditions of 2014 (n = 257). Concentrations of fecal indicator bacteria were highly variable between reservoirs (p < 0.05) and along the horizontal profile (p < 0.001) from upstream to downstream, with higher concentrations typically found outside of the reservoirs than within. Though many of the reservoirs were thermally stratified, bacterial concentrations were not associated with water temperature (p > 0.05) or any one particular depth strata (p < 0.05). However, prevalence of Salmonella and STEC (16/70 and 9/70 respectively) was higher in the deep strata than in mid or surface layers. We found no statistical association between samples collected downstream of reservoirs and those from the reservoirs themselves. Continued monitoring and modeling of both bacterial indicators and enteric pathogens are critical to our ability to estimate the risk of surface irrigation water supplies and make appropriate management decisions.

Temporal Stability of Escherichia coli Concentrations in Waters of Two Irrigation Ponds in Maryland

Fecal contamination of water sources is an important water quality issue for agricultural irrigation ponds. Escherichia coli concentrations are commonly used to evaluate recreational and irrigation water quality. We hypothesized that there may exist temporally stable spatial patterns of E. coli concentrations across ponds, meaning that some areas mostly have higher and other areas mostly lower than average concentrations of E. coli To test this hypothesis, we sampled two irrigation ponds in Maryland at nodes of spatial grids biweekly during the summer of 2016. Environmental covariates-temperature, turbidity, conductivity, pH, dissolved oxygen, chlorophyll a, and nutrients-were measured in conjunction with E. coli concentrations. Temporal stability was assessed using mean relative differences between measurements in each location and averaged measurements across ponds. Temporally stable spatial patterns of E. coli concentrations and the majority of environmental covariates were expressed for both ponds. In the pond interior, larger relative mean differences in chlorophyll a corresponded to smaller mean relative differences in E. coli concentrations, with a Spearman's rank correlation coefficient of 0.819. Turbidity and ammonium concentrations were the two other environmental covariates with the largest positive correlations between their location ranks and the E. coli concentration location ranks. Tenfold differences were found between geometric mean E. coli concentrations in locations that were consistently high or consistently low. The existence of temporally stable patterns of E. coli concentrations can affect the results of microbial water quality assessment in ponds and should be accounted for in microbial water quality monitoring design.IMPORTANCE The microbial quality of water in irrigation water sources must be assessed to prevent the spread of microbes that can cause disease in humans because of produce consumption. The microbial quality of irrigation water is evaluated based on concentrations of Escherichia coli as the indicator organism. Given the high spatial and temporal variability of E. coli concentrations in irrigation water sources, recommendations are needed on where and when samples of water have to be taken for microbial analysis. This work demonstrates the presence of a temporally stable spatial pattern in the distributions of E. coli concentrations across irrigation ponds. The ponds studied had zones where E. coli concentrations were mostly higher than average and zones where the concentrations were mostly lower than average over the entire observation period, covering the season when water was used for irrigation. Accounting for the existence of such zones will improve the design and implementation of microbial water quality monitoring.

Prevalence and Genetic Diversity of Enterococcus faecalis Isolates from Mineral Water and Spring Water in China

Enterococcus faecalis is an important opportunistic pathogen which is frequently detected in mineral water and spring water for human consumption and causes human urinary tract infections, endocarditis and neonatal sepsis. The aim of this study was to determine the prevalence, virulence genes, antimicrobial resistance and genetic diversity of E. faecalis from mineral water and spring water in China. Of 314 water samples collected from January 2013 to January 2014, 48 samples (15.3%) were contaminated E. faecalis. The highest contamination rate occurred in activated carbon filtered water of spring water (34.5%), followed by source water of spring water (32.3%) and source water of mineral water (6.4%). The virulence gene test of 58 E. faecalis isolates showed that the detection rates of asa1, ace, cylA, gelE and hyl were 79.3, 39.7, 0, 100, 0%, respectively. All 58 E. faecalis isolates were not resistant to 12 kinds of antibiotics (penicillin, ampicillin, linezolid, quinupristin/dalfopristin, vancomycin, gentamicin, streptomycin, ciprofloxacin, levofloxacin, norfloxacin, nitrofurantoin, and tetracycline). Enterobacterial repetitive intergenic consensus-PCR classified 58 isolates and three reference strains into nine clusters with a similarity of 75%. This study is the first to investigate the prevalence of E. faecalis in mineral water and spring water in China. The results of this study suggested that spring water could be potential vehicles for transmission of E. faecalis.

Microbiological quality of water in a city with persistent and recurrent waterborne diseases under tropical sub-rural conditions: The case of Kikwit City, Democratic Republic of the Congo

The availability of safe drinking water in sub-Saharan countries remains a major challenge because poor sanitation has been the cause of various outbreaks of waterborne disease due to the poor microbiological quality of water used for domestic purposes. The faecal indicator bacteria (FIB) used in the present study included Escherichia coli (E. coli) and Enterococcus (ENT). FIB and aerobic mesophilic bacteria (AMB) were quantified during July 2015 (dry season) and November 2015 (rainy season) in order to assess the quality of drinking water from wells (n=3; P1-P3), and two rivers, the River Lukemi (RLK, n=3) and River Luini (RLN, n=2) in the city of Kikwit, which is located in the province of Kwilu in the Democratic Republic of the Congo. Kikwit is well known for its outbreaks of persistent and recurrent waterborne diseases including Entamoeba, Shigella, typhoid fever, cholera, and Ebola Viral Hemorrhagic Fever. Consequently, E. coli, ENT, and AMB were quantified in water samples according to the standard international methods for water quality determination using the membrane filtration method. The FIB characterization was performed for human-specific Bacteroides by PCR using specific primers. The results obtained revealed high FIB concentrations in river samples collected during both seasons. For example, E. coli respectively reached 4.3×10⁴ and 9.2×10⁴ CFU 100mL^-1 in the dry season and the wet season. ENT reached 5.3×10³ CFU 100mL^-1 during the dry season and 9.8×10³ CFU 100mL^-1 in the wet season. The pollution was significantly worse in the wet season compared to the dry season. Surprisingly, no faecal contamination was observed in well water samples collected in the dry season while E. coli and ENT were detected in all wells in the wet season with values of 6, 7, and 11CFUmL^-1 for E. coli in wells P1-P3, respectively and 3, 5, 9 CFU mL^-1for ENT in the same wells. Interestingly, the PCR assays for human-specific Bacteroides HF183/HF134 indicated that 97-100% captured in all analyses of isolated FIB were of human origin. The results indicate that contamination of E. coli, ENT, and AMB in the studied water resources increases during the wet season. This study improves understanding of the microbiological pollution of rivers and wells under tropical conditions and will guide future municipal/local government decisions on improving water quality in this region which is characterised by persistent and recurrent waterborne diseases. Although the epidemiology can be geographically localised, the effects of cross border transmission can be global. Therefore, the research results presented in this article form recommendations to municipalities/local authorities and the approach and procedures can be carried out in a similar environment.

The impact of hospital and urban wastewaters on the bacteriological contamination of the water resources in Kinshasa, Democratic Republic of Congo

Although the United Nations General Assembly recognized in 2010 the right to safe and clean drinking water and sanitation as a human right that is essential to the full enjoyment of life and all other human rights, the contamination of water supplies with faecal pathogens is still a major and unsolved problem in many parts of the world. In this study, faecal indicator bacteria (FIB), including Escherichia coli (E. coli) and Enterococcus (ENT), were quantified over the period of June/July 2014 and June/July 2015 to assess the quality of hospital effluents (n = 3: H1, H2 and H3) and of rivers receiving wastewaters from the city of Kinshasa, Democratic Republic of Congo. The water and sediment samples from the river-receiving systems were collected in, upstream and downstream of the hospital outlet pipe (HOP) discharge. The analysis of E. coli and ENT in water and sediment suspension was performed using the cultural membrane filter method. The FIB characterization was performed for general E. coli, Enterococcus faecalis(E. faecalis) and human-specific Bacteroides by PCR using specific primers. The results revealed very high FIB concentration in the hospital effluent waters, with E. coli reaching the values of 4.2 × 10(5), 16.1 × 10(5) and 5.9 × 10(5) CFU 100 mL(-1), for the hospital effluents from H1, H2, and H3, respectively; and Enterococcus reaching the values of 2.3 × 10(4), 10.9 × 10(4) and 4.1 × 10(4) CFU 100 mL(-1), respectively. Interestingly, the FIB levels in the water and sediment samples from river-receiving systems are spatially and temporally highly variable and present in some samples with higher values than the hospital effluents. The PCR assays for human-specific Bacteroides HF183/HF134 further indicate that more than 98% of bacteria were from human origin. The results of this research therefore confirm the hypothesis of our previous studies, indicating that in developing countries (e.g., Democratic Republic of Congo and South India), the hospital effluent waters can be a significant source of the deterioration of the bacteriological quality for urban rivers. The approach used in this investigation can be further used to decipher the pollution of water resources by human faecal contamination. The results of this research will help to better understand the microbiological pollution problems in river-receiving systems and will guide municipality decisions on improving the urban water quality.

Environmental waters as a source of antibiotic-resistant Enterococcus species in Belgrade, Serbia

Despite the number of studies on antibiotic-resistant enterococci from Serbian clinical settings, there are no data about environmental contamination with these bacteria. Thus, this study investigated the prevalence of antibiotic-resistant enterococci in Belgrade, Serbia. Enterococcus species collected from ten surface water sites, including a lake, two major river systems, and springs, were tested. Among enterococci, we found single (21.7 %), double (17.4 %), and multiple antibiotic resistance patterns (56.3 %). Vancomycin-resistant strains were not found, indicating that their abundance in Belgrade is tightly linked to clinical settings. The multiple drug-resistant strains Enterococcus faecalis, Enterococcus faecium, and Enterococcus mundtii were frequently detected in the lake during the swimming season and in the rivers near industrial zones. We confirmed the presence of ermB, ermC, ant(6)-Ia, tetM, and tetL and mutations in gyrA genes. The phylogenetic analysis of 16S rRNA gene of E. faecium isolates that harbor esp gene classified them into two groups based on high-bootstraps scores in the tree analysis. Pulsed-field gel electrophoresis analysis of antibiotic-resistant enterococci revealed genomic similarity ranging from 75 to 100 %. This study indicates the importance of anthropogenic impact to the spread of antibiotic-resistant enterococci in environmental waters of Belgrade, Serbia.

Enterococcus species diversity and molecular characterization of biomarker genes in Enterococcus faecalis in Port Blair Bay, Andaman and Nicobar Islands, India

This study was performed to evaluate the abundance and diversity of Enterococcus sp. and the distribution of biomarker genes in Enterococcus faecalis in Port Blair Bay, Andaman and Nicobar Islands. The Enterococcus sp. densities at the seven sampling stations were highly influenced by tidal fluctuations and season. The distributions and diversities of species varied in the inner and outer regions of Port Blair Bay. Among the 1816 total isolates, the occurrence of fecal Enterococcus was high (1.78×10(4) CFU/100 mL) in Phoenix Bay. Moreover, 67.76% of the isolates were identified as Enterococcus, and the most frequently identified species were E. hirae, E. avium and E. faecalis. Assessments of antibiotic resistance and biomarker genes revealed the maximum occurrence in the Aberdeen Bay isolates. The most prevalent biomarker genes observed in the E. faecalis isolates were gelE and asa1, whereas cyl was not found among the isolates. In silico sequence analysis of biomarker genes of E. faecalis also revealed that they are evolutionarily well conserved with those of earlier reports. Further, multivariate analysis distinguished the JB, PB and OS stations from the other stations according to distinctive microbial densities and compositions. In addition, the Shannon-Wiener diversity indices and box-whisker plots further facilitated and supported the multivariate results.

Assessment of pathogenic bacteria in water and sediment from a water reservoir under tropical conditions (Lake Ma Vallée), Kinshasa Democratic Republic of Congo

This study was conducted to assess potential human health risks presented by pathogenic bacteria in a protected multi-use lake-reservoir (Lake Ma Vallée) located in west of Kinshasa, Democratic Republic of Congo (DRC). Water and surface sediments from several points of the Lake were collected during summer. Microbial analysis was performed for Escherichia coli, Enterococcus (ENT), Pseudomonas species and heterotrophic plate counts. PCR amplification was performed for the confirmation of E. coli, ENT, Pseudomonas spp. and Pseudomonas aeruginosa isolated from samples. The results reveal low concentration of bacteria in water column of the lake, the bacterial quantification results observed in this study for the water column were below the recommended limits, according to WHO and the European Directive 2006/7/CE, for bathing water. However, high concentration of bacteria was observed in the sediment samples; the values of 2.65 × 10(3), 6.35 × 10(3), 3.27 × 10(3) and 3.60 × 10(8) CFU g(-1) of dry sediment for E. coli, ENT, Pseudomonas spp. and heterotrophic plate counts, respectively. The results of this study indicate that sediments of the Lake Ma Vallée can constitute a reservoir of pathogenic microorganisms which can persist in the lake. Possible resuspension of faecal indicator bacteria and pathogens would affect water quality and may increase health risks to the population during recreational activities. Our results indicate that the microbial sediment analysis provides complementary and important information for assessing sanitary quality of surface water under tropical conditions.

Disinfection byproduct formation from chlorination of pure bacterial cells and pipeline biofilms

Disinfection byproduct (DBP) formation is commonly attributed to the reaction between natural organic matters and disinfectants, yet few have considered the contribution from disinfecting bacterial materials - the essential process of water disinfection. Here, we explored the DBP formation from chlorination and chloramination of Escherichia coli and found that most selected DBPs were detectable, including trihalomethanes, haloacetonitriles, chloral hydrate, chloropicrin, and 1,1,1-trichloro-2-propanone. A positive correlation (P = 0.08-0.09) between DBP formation and the log reduction of E. coli implied that breaking down of bacterial cells released precursors for DBP formation. As Pseudomonas aeruginosa is a dominant bacterial species in pipeline biofilms, the DBP formation potentials (DBPFPs) from its planktonic cells and biofilms were characterized. Planktonic cells formed 7-11 times greater trihalomethanes per carbon of those from biofilms but significantly lower (P < 0.05) chloral hydrate, highlighting the bacterial phenotype's impact on the bacteria-derived DBPFP. Pipe material appeared to affect the DBPFP of bacteria, with 4-28% lower bromine incorporation factor for biofilms on polyvinyl chloride compared to that on galvanized zinc. This study revealed both the in situ disinfection of bacterial planktonic cells in source water and ex situ reaction between biofilms and residual chlorine in pipeline networks as hitherto unknown DBP sources in drinking water.

Antibiotics and heavy metals resistance and other biological characters in enterococci isolated from surface water of Monte Cotugno Lake (Italy)

Considering the limited knowledge about the biological characters in enterococci isolated from surface waters, we investigated antibiotic and heavy-metal resistance, bacteriocin production, and some important virulence traits of 165 enterococci collected in water samples from Monte Cotugno Lake, the largest artificial basin built with earth in Europe. The species distribution of isolates was as follows: Enterococcus faecium (80%), Enterococcus faecalis (12.7%), Enterococcus casseliflavus (3%), Enterococcus mundtii (1.8%), Enterococcus hirae (1.8%), Enterococcus durans (0.6%). All enterococci showed heavy metal resistance toward Cu, Ni, Pb and Zn, were susceptible to Ag and Hg, and at the same time exhibited in large percentage (83.7%) resistance to one or more of the antibiotics tested. Relatively to virulence factor genes, 50.9% enterococci were positive for gelatinase (gelE), 10.9% for aggregation substance (agg), 12.7% and 66.6% for the cell wall adhesins (efaAfs and efaAfm), respectively. No amplicons were detected after PCR for cytolysin production (cylA, cylB and cylM) and enterococcal surface protein (esp) genes. Bacteriocin production was found in most of the isolates. Given that the waters of the Monte Cotugno Lake are used for different purposes, among which farming and recreational activities, they can contribute to spread enterococci endowed with virulence factors, and antibiotics and heavy metals resistance to humans.

SNP diversity of Enterococcus faecalis and Enterococcus faecium in a South East Queensland waterway, Australia, and associated antibiotic resistance gene profiles

BACKGROUND

Enterococcus faecalis and Enterococcus faecium are associated with faecal pollution of water, linked to swimmer-associated gastroenteritis and demonstrate a wide range of antibiotic resistance. The Coomera River is a main water source for the Pimpama-Coomera watershed and is located in South East Queensland, Australia, which is used intensively for agriculture and recreational purposes. This study investigated the diversity of E. faecalis and E. faecium using Single Nucleotide Polymorphisms (SNPs) and associated antibiotic resistance profiles.

RESULTS

Total enterococcal counts (cfu/ml) for three/six sampling sites were above the United States Environmental Protection Agency (USEPA) recommended level during rainfall periods and fall into categories B and C of the Australian National Health and Medical Research Council (NHMRC) guidelines (with a 1-10% gastrointestinal illness risk). E. faecalis and E. faecium isolates were grouped into 29 and 23 SNP profiles (validated by MLST analysis) respectively. This study showed the high diversity of E. faecalis and E. faecium over a period of two years and both human-related and human-specific SNP profiles were identified. 81.8% of E. faecalis and 70.21% of E. faecium SNP profiles were associated with genotypic and phenotypic antibiotic resistance. Gentamicin resistance was higher in E. faecalis (47% resistant) and harboured the aac(6')-aph(2') gene. Ciprofloxacin resistance was more common in E. faecium (12.7% resistant) and gyrA gene mutations were detected in these isolates. Tetracycline resistance was less common in both species while tet(L) and tet(M) genes were more prevalent. Ampicillin resistance was only found in E. faecium isolates with mutations in the pbp5 gene. Vancomycin resistance was not detected in any of the isolates. We found that antibiotic resistance profiles further sub-divided the SNP profiles of both E. faecalis and E. faecium.

CONCLUSIONS

The distribution of E. faecalis and E. faecium genotypes is highly diverse in the Coomera River. The SNP genotyping method is rapid and robust and can be applied to study the diversity of E. faecalis and E. faecium in waterways. It can also be used to test for human-related and human-specific enterococci in water. The resolving power can be increased by including antibiotic-resistant profiles which can be used as a possible source tracking tool. This warrants further investigation.

Effects of land uses on fecal indicator bacteria in the water and soil of a tropical watershed

Effects of different land uses on densities of Escherichia coli, enterococci, and Clostridium perfringens in the water and soil of a tropical watershed were investigated. Densities of fecal indicator bacteria (FIBs) in the watershed exhibited a clear land-use dependency in the stream water. Significantly higher concentrations were detected in the urban portion of the stream (417, 420, and 44 CFU 100 mL(-1) for E. coli, enterococci, and C. perfringens, respectively) than in the forest portion (54, 32, and 5 CFU 100 mL(-1) for E. coli, enterococci, and C. perfringens, respectively). High concentrations of FIBs were also detected in the soil of the watershed with concentration ranges of 603-1,820,000, 69-17,000, and 0-525 CFU 100 g soil(-1) for E. coli, enterococci, and C. perfringens, respectively, which however were not affected by the different land uses. Prior cumulative rainfall significantly correlated with concentrations of E. coli and enterococci in the urban stream water (r=0.73-0.87, P<0.05), but not with the alternative FIB C. perfringens. Poor correlations were observed in the forest reach of the stream for all FIBs. Furthermore, the concentration of C. perfringens only correlated strongly and significantly with E. coli and enterococci in stream water (r=0.70-0.82, P<0.05), but not in tropical soil, indicating different survival and transport behaviors.

Origin and spatial-temporal distribution of faecal bacteria in a bay of Lake Geneva, Switzerland

The origin and distribution of microbial contamination in Lake Geneva's most polluted bay were assessed using faecal indicator bacteria (FIB). The lake is used as drinking water, for recreation and fishing. During 1 year, water samples were taken at 23 points in the bay and three contamination sources: a wastewater treatment plant (WWTP), a river and a storm water outlet. Analyses included Escherichia coli, enterococci (ENT), total coliforms (TC), and heterotrophic plate counts (HPC). E. coli input flux rates from the WWTP can reach 2.5 x 10(10) CFU/s; those from the river are one to three orders of magnitude lower. Different pathogenic Salmonella serotypes were identified in water from these sources. FIB levels in the bay are highly variable. Results demonstrate that (1) the WWTP outlet at 30 m depth impacts near-surface water quality during holomixis in winter; (2) when the lake is stratified, the effluent water is generally trapped below the thermocline; (3) during major floods, upwelling across the thermocline may occur; (4) the river permanently contributes to contamination, mainly near the river mouth and during floods, when the storm water outlet contributes additionally; (5) the lowest FIB levels in the near-surface water occur during low-flow periods in the bathing season.

Persistence and growth of faecal culturable bacterial indicators in water column and sediments of Vidy Bay, Lake Geneva, Switzerland

The aims of this study was to investigate the persistence and the growth of culturable bacterial indicators (CBI) including total coliforms (TC) and faecal coliforms represented by Escherichia coli, enterococcus (ENT), and aerobic mesophilic bacteria (AMB) in the surface sediments and the water column of Vidy Bay (Lake Geneva, City of Lausanne, Switzerland). The study was carried out for 60 d using microcosms containing Sewage Treatment Plant (STP) effluent and nonsterile water without CBI, as well as contaminated and non-contaminated sediments. The effects of water temperature and of organic matter associated with sediments on the survival of CBI in the sediments and the water column were observed. The number of CBI colonies in the contaminated sediments of Vidy Bay and in the STP effluent was almost identical in the order of 10(5)-10(7), 10(4)-10(6), 10(3)-10(5), and 10(4)-10(7) CFU/100 g sediment or/100 mL water for TC, E. coli, ENT, and AMB respectively. A degradation of CBI was observed in the sediments where organic matter content was low and in the water column at a temperature of 10 degrees C after 5 d of experimentation. In addition, a growth of CBI was observed in the sediment which is rich in organic matter at 20 degrees C. The results of this study indicate: (1) the higher concentrations of the CBI observed in different points in the water column of Vidy Bay may not be explained only by the recent contribution of the three potential sources of the Bay contamination including STP and the Chamberonne and Flon Rivers, but also by the persistence, removal from sediment and multiplication of CBI in the sediment and water column; (2) the sediment of Vidy Bay constitute a reservoir of CBI and can even support their growth; and (3) the CBI not only survive in sediments, but also can be remobilized and increased in the water column, therefore, it become a permanent microbiological pollution in Vidy Bay.