In-situ biofilm characterization in membrane systems using Optical Coherence Tomography: formation, structure, detachment and impact of flux change

In-situ measurement of the internal compaction of a soft material caused by permeation flow

HYPOTHESIS

The compaction of hydrogel films under permeation flow can be measured, in-situ, by tracking the internal displacements of their structure, thereby revealing the internal deformation profile. Additionally, monitoring the permeation flow rate and applied pressure over time enables determination of variations in the hydrogel's permeability due to flow-induced compaction. Hydrogels are soft porous materials capable of containing high amounts of water within their polymeric matrix. Flow-induced internal deformation can modify the hydrogel's permeability and selectivity, which are important attributes in separation processes, both industrial (e.g., membrane-based water purification) and natural (mucous filters in suspension feeders and intestinal lining) systems. Measuring the flow-induced compaction in thin hydrogels films can reveal the interplay between flow and permeability. However, the micro-scale internal compaction remains uncharted for due to experimental challenges.

EXPERIMENTS

A technique is demonstrated for analyzing the compaction and stratification of permeable soft materials, in-situ, created by a pressure-driven permeation flow. To this end, the internal deformations within a soft material layer are calculated, based on tracking the positions of fluorescent micro-tracers that are embedded within the soft material. We showcase the capabilities of this technique by examining a hundred-micron-thick calcium-alginate cake deposited on a nanofiltration membrane, emphasizing the achieved micro-scale resolution of the local compaction measurements.

FINDINGS

The results highlight the possibility to examine thin hydrogel films and their internal deformation produced by flow-induced stresses when varying the flow conditions. The method enables the simultaneous calculation of the soft material's permeance, as the pressure-driven flow conditions are continuously monitored. In summary, the proposed method provides a powerful tool for characterizing the behaviour of permeable soft materials under permeation conditions, with potential applications in engineering, biophysics and material science.

Unveiling the spatiotemporal dynamics of membrane fouling: A focused review on dynamic fouling characterization techniques and future perspectives

Membrane technology has emerged as a crucial method for obtaining clean water from unconventional sources in the face of water scarcity. It finds wide applications in wastewater treatment, advanced treatment, and desalination of seawater and brackish water. However, membrane fouling poses a huge challenge that limits the development of membrane-based water treatment technologies. Characterizing the dynamics of membrane fouling is crucial for understanding its development, mechanisms, and effective mitigation. Instrumental techniques that enable in situ or real-time characterization of the dynamics of membrane fouling provide insights into the temporal and spatial evolution of fouling, which play a crucial role in understanding the fouling mechanism and the formulation of membrane control strategies. This review consolidates existing knowledge about the principal advanced instrumental analysis technologies employed to characterize the dynamics of membrane fouling, in terms of membrane structure, morphology, and intermolecular forces. Working principles, applications, and limitations of each technique are discussed, enabling researchers to select appropriate methods for their specific studies. Furthermore, prospects for the future development of dynamic characterization techniques for membrane fouling are discussed, underscoring the need for continued research and innovation in this field to overcome the challenges posed by membrane fouling.

3D Optical Coherence Tomography image processing in BISCAP: characterization of biofilm structure and properties

MOTIVATION

BISCAP is a state-of-the-art tool for automatically characterizing biofilm images obtained from Optical Coherence Tomography. Limited availability of other software tools is reported in the field. BISCAP's first version processes 2D images only. Processing 3D images is a problem of greater scientific relevance since it deals with the entire structure of biofilms instead of their 2D slices.

RESULTS

Building on the image-processing principles and algorithms proposed earlier for 2D images, these were adapted to the 3D case, and a more general implementation of BISCAP was developed. The primary goal concerns the extension of the initial methodology to incorporate the depth axis in 3D images; multiple improvements were also made to boost computational performance. The calculation of structural properties and visual outputs was extended to offer new insights into the 3D structure of biofilms. BISCAP was tested using 3D images of biofilms with different morphologies, consistently delivering accurate characterizations of 3D structures in a few minutes using standard laptop machines. Low user dependency is required for image analysis.

AVAILABILITY AND IMPLEMENTATION

BISCAP is available from https://github.com/diogonarciso/BISCAP. All images used in the tutorials and the validation examples are available from https://web.fe.up.pt/∼fgm/biscap3d.

Draft genome sequence of Sphingomonas paucimobilis strain Sph5, isolated from tap water filtration membrane

Sphingomonadaceae are common membrane colonizers and biofilm formers. As part of our studies on long-term genetic changes in drinking water biofilm species, we report the draft genome sequence of Sphingomonas strain Sph5, isolated from a tap water filtration membrane. The isolate was determined as Sphingomonas paucimobilis through whole genome sequencing and de novo assembly.

Magnetic Soft Robot for Minimally Invasive Urethral Catheter Biofilm Eradication

Catheter-related biofilm infection remains the main problem for millions of people annually, affecting morbidity, mortality, and quality of life. Despite the recent advances in the prevention of biofilm formation, alternative methods for biofilm prevention or eradication still should be found to avoid traumatic and expensive removal or catheter replacement. Soft magnetic robots have drawn significant interest in favor of remote control, fast response, and wide space for design. In this work, we demonstrated magnetic soft robots as a minimally invasive, safe, and effective approach to eliminate biofilm from urethral catheters (20 Fr or 5.1 mm in diameter). Seven designs of the robot were fabricated (size 4.5 × 15 mm), characterized, and tested in the presence of a rotating magnetic field. As a proof-of-concept, we demonstrated the superior efficiency of biofilm removal on the model of a urethral catheter using a magnetic robot, reaching full eradication for the octagram-shaped robot (velocity 2.88 ± 0.6 mm/s) at a 15 Hz frequency and a 10 mT amplitude. These findings are helpful for the treatment of biofilm-associated catheter contamination, which allows an increase in the catheter wearing time without frequent replacement and treatment of catheter-associated infections.

Selective Optical Imaging for Detection of Bacterial Biofilms in Tissues

SIGNIFICANCE

The development of an imaging technique to accurately identify biofilm regions on tissues and in wounds is crucial for the implementation of precise surface-based treatments, leading to better patient outcomes and reduced chances of infection.

AIM

The goal of this study was to develop an imaging technique that relies on selective trypan blue (TB) staining of dead cells, necrotic tissues, and bacterial biofilms, to identify biofilm regions on tissues and wounds.

APPROACH

The study explored combinations of ambient multi-colored LED lights to obtain maximum differentiation between stained biofilm regions and the underlying chicken tissue or glass substrate during image acquisition. The TB imaging results were then visually and statistically compared to fluorescence images using a shape similarity measure.

RESULTS

The comparisons between the proposed TB staining method and the fluorescence standard used to detect biofilms on tissues and glass substrates showed up to 97 percent similarity, suggesting that the TB staining method is a promising technique for identifying biofilm regions.

CONCLUSIONS

The TB staining method demonstrates significant potential as an effective imaging technique for the identification of fluorescing and non-fluorescing biofilms on tissues and in wounds. This approach could lead to improved precision in surface-based treatments and better patient outcomes.

Influence of water quality factors on cake layer 3D structures and water channels during ultrafiltration process

The three-dimensional (3D) structure of the cake layer, which could be influenced by water quality factors, plays a significant role in the ultrafiltration (UF) efficiency of water purification. However, it remains challenging to precisely reveal the variation of cake layer 3D structures and water channel characteristics. Herein, we systematically report the variation in the cake layer 3D structure at the nanoscale induced by key water quality factors and reveal its influence on water transport, in particular the abundance of water channels within the cake layer. In comparison with pH and Na+, Ca2+ played more significant role in determining cake layer structures. The sandwich-like cake layer, which was induced by the asynchronous deposition of humic acids and sodium alginate (SA), shifted to an isotropic structure when Ca2+ was present due to the Ca2+ bridging. In comparison with the sandwich-like structure, the isotropic cake layer has higher fractions of free volume (voids) and more water channels, leading to a 147% improvement in the water transport coefficient, 60% reduction in the cake layer resistance, and 21% increase in the final membrane specific flux. Our work elucidates a structure-property relationship where improving the isotropy of the cake layer 3D structure is conducive to the optimization of water channels and water transport within cake layers. This could inspire tailored regulation strategies for cake layers to enhance the UF efficiency of water purification.

Cake layer 3D structure regulation to optimize water channels during Al-based coagulation-ultrafiltration process

The variation in cake layer three-dimensional (3D) structures and related water channel characteristics induced by coagulation pretreatment remains unclear; however, gaining such knowledge will aid in improving ultrafiltration (UF) efficiency for water purification. Herein, the regulation of cake layer 3D structures (3D distribution of organic foulants within cake layers) by Al-based coagulation pretreatment was analyzed at the micro/nanoscale. The sandwich-like cake layer of humic acids and sodium alginate induced without coagulation was ruptured, and foulants were gradually uniformly distributed within the floc layer (toward an isotropic structure) with increasing coagulant dosage (a critical dosage was observed). Furthermore, the structure of the foulant-floc layer was more isotropic when coagulants with high Al₁₃ concentrations were used (either AlCl₃ at pH 6 or polyaluminum chloride, in comparison with AlCl₃ at pH 8 where small-molecular-weight humic acids were enriched near the membrane). These high Al₁₃ concentrations lead to a 48.4% higher specific membrane flux than that seen for UF without coagulation. Molecular dynamics simulations revealed that with increasing Al₁₃ concentration (Al₁₃: 6.2% to 22.6%), the water channels within the cake layer were enlarged and more connected, and the water transport coefficient was improved by up to 54.1%, indicating faster water transport. These findings demonstrate that facilitating an isotropic foulant-floc layer with highly connected water channels by coagulation pretreatment with high-Al₁₃-concentration coagulants (having a strong ability to complex organic foulants) is the key issue in optimizing the UF efficiency for water purification. The results should provide further understanding of the underlying mechanisms of coagulation-enhancing UF behavior and inspire precise design of coagulation pretreatment to achieve efficient UF.

Effect of EPS production on the performance of membrane-based biofilm reactors

This study explored the effect of extracellular polymeric substance (EPS) production on the performance of membrane-based biofilm reactors. Changing EPS production was induced by eliminating one of the main EPS polysaccharides, i.e., Pel. The studies were carried out using a pure culture of either Pseudomonas aeruginosa or an isogenic P. aeruginosa mutant that was unable to produce the Pel polysaccharide. The biofilm cell density for both strains was compared to confirm the Pel deletion mutant decreased overall EPS production in a bioreactor system. When the Pel-deficient mutant was grown as a biofilm, its cell density, i.e., ratio of cells/(cells + EPS), was 74 % higher than the wild type, showing EPS production was reduced by eliminating pel production. The growth kinetics were determined for both strains. The Pel-deficient mutant had a maximum specific growth rate (μ^) that was 14% higher than the wild type. Next, the effects of EPS reduction on reactor performance were assessed for a membrane aerated biofilm reactor (MABR) and a membrane bioreactor (MBR). For the MABR, the organic removal with the Pel-deficient mutant was around 8% higher than for the wild type. For the MBR, the time to reach the fouling threshold was 65 % greater for the Pel-deficient mutant than for the wild type. These results suggest that amount of EPS production can have significant effects on bacterial growth kinetics and bacterial cell density, which in turn can affect the performance of the membrane-based biofilm reactors. In both cases, lower EPS production correlated with more efficient treatment processes.

Designing sustainable membrane-based water treatment via fouling control through membrane interface engineering and process developments

Membrane-based water treatment processes have been established as a powerful approach for clean water production. However, despite the significant advances made in terms of rejection and flux, provision of sustainable and energy-efficient water production is restricted by the inevitable issue of membrane fouling, known to be the major contributor to the elevated operating costs due to frequent chemical cleaning, increased transmembrane resistance, and deterioration of permeate flux. This review provides an overview of fouling control strategies in different membrane processes, such as microfiltration, ultrafiltration, membrane bioreactors, and desalination via reverse osmosis and forward osmosis. Insights into the recent advancements are discussed and efforts made in terms of membrane development, modules arrangement, process optimization, feed pretreatment, and fouling monitoring are highlighted to evaluate their overall impact in energy- and cost-effective water treatment. Major findings in four key aspects are presented, including membrane surface modification, modules design, process integration, and fouling monitoring. Among the above mentioned anti-fouling strategies, a large part of research has been focused on membrane surface modifications using a number of anti-fouling materials whereas much less research has been devoted to membrane module advancements and in-situ fouling monitoring and control. At the end, a critical analysis is provided for each anti-fouling strategy and a rationale framework is provided for design of efficient membranes and process for water treatment.

Impact of Fe2+ and Shear Stress on the Development and Mesoscopic Structure of Biofilms-A Bacillus subtilis Case Study

Bivalent cations are known to affect the structural and mechanical properties of biofilms. In order to reveal the impact of Fe²⁺ ions within the cultivation medium on biofilm development, structure and stability, Bacillus subtilis biofilms were cultivated in mini-fluidic flow cells. Two different Fe²⁺ inflow concentrations (0.25 and 2.5 mg/L, respectively) and wall shear stress levels (0.05 and 0.27 Pa, respectively) were tested. Mesoscopic biofilm structure was determined daily in situ and non-invasively by means of optical coherence tomography. A set of ten structural parameters was used to quantify biofilm structure, its development and change. The study focused on characterizing biofilm structure and development at the mesoscale (mm-range). Therefore, biofilm replicates (n = 10) were cultivated and analyzed. Three hypotheses were defined in order to estimate the effect of Fe²⁺ inflow concentration and/or wall shear stress on biofilm development and structure, respectively. It was not the intention to investigate and describe the underlying mechanisms of iron incorporation as this would require a different set of tools applied at microscopic levels as well as the use of, i.e., omic approaches. Fe²⁺ addition influenced biofilm development (e.g., biofilm accumulation) and structure markedly. Experiments revealed the accumulation of FeO(OH) within the biofilm matrix and a positive correlation of Fe²⁺ inflow concentration and biofilm accumulation. In more detail, independent of the wall shear stress applied during cultivation, biofilms grew approximately four times thicker at 2.5 mg Fe²⁺/L (44.8 µmol/L; high inflow concentration) compared to the low Fe²⁺ inflow concentration of 0.25 mg Fe²⁺/L (4.48 µmol/L). This finding was statistically verified (Scheirer-Ray-Hare test, ANOVA) and hints at a higher stability of Bacillus subtilis biofilms (e.g., elevated cohesive and adhesive strength) when grown at elevated Fe²⁺ inflow concentrations.

Biofilm stratification in counter-diffused membrane biofilm bioreactors (MBfRs) for aerobic methane oxidation coupled to aerobic/anoxic denitrification: Effect of oxygen pressure

Aerobic methane oxidation coupled with denitrification (AME-D) executed in membrane biofilm bioreactors (MBfRs) provides a high promise for simultaneously mitigating methane (CH₄) emissions and removing nitrate in wastewater. However, systematically experimental investigation on how oxygen partial pressure affects the development and characteristics of counter-diffusional biofilm, as well as its spatial stratification profiles, and the cooperative interaction of the biofilm microbes, is still absent. In this study, we combined Optical Coherence Tomography (OCT) with Confocal Laser Scanning Microscopy (CLSM) to in-situ characterize the development of counter-diffusion biofilm in the MBfR for the first time. It was revealed that oxygen partial pressure onto the MBfR was capable of manipulating biofilm thickness and spatial stratification, and then managing the distribution of functional microbes. With the optimized oxygen partial pressure of 5.5 psig (25% oxygen content), the manipulated counter-diffusional biofilm in the AME-D process obtained the highest denitrification efficiency, due mainly to that this biofilm had the proper dynamic balance between the aerobic-layer and anoxic-layer where suitable O₂ gradient and sufficient aerobic methanotrophs were achieved in aerobic-layer to favor methane oxidation, and complete O₂ depletion and accessible organic sources were kept to avoid constraining denitrification activity in anoxic-layer. By using metagenome analysis and Fluorescence in situ hybridization (FISH) staining, the spatial distribution of the functional microbes within counter-diffused biofilm was successfully evidenced, and Rhodocyclaceae, one typical aerobic denitrifier, was found to survive and gradually enriched in the aerobic layer and played a key role in denitrification aerobically. This in-situ biofilm visualization and characterization evidenced directly for the first time the cooperative path of denitrification for AME-D in the counter-diffused biofilm, which involved aerobic methanotrophs, heterotrophic aerobic denitrifiers, and heterotrophic anoxic denitrifiers.

Dynamic Changes in Biofilm Structures under Dynamic Flow Conditions

Detachment is an important process determining the structure and function of bacterial biofilm, which has significant implications for biogeochemical cycling of elements, biofilm application, and infection control in clinical settings. Quantifying the responses of biofilm structure to hydrodynamics is crucial for understanding biofilm detachment mechanisms in aquatic environments.

Can the carbon metabolic activity of biofilm be regulated by the hydrodynamic conditions in urban rivers?

Hydrodynamic regulation is widely used to improve the water quality of urban rivers. However, it is yet to explore substantially whether hydrodynamics could regulate the metabolic activity of biofilm in such aquatic systems. Herein, the pilot experiment of hydrodynamics in the rotation tanks was designed, including two experiment phases, namely constant flow and adjusting flow for 21 days and 14 days, respectively. In constant flow phase, biofilms grew in five shear stress gradients (R1-R5, 0.0044- 0.12 Pa). The carbon metabolic rate (k) of mature biofilms evaluated by BIOLOG ECO microplates showed a hump-shaped relationship with increasing shear stress, with R3 (0.049 Pa) the highest, while R5 (0.12 Pa) the lowest. To verify whether the metabolic activity of biofilm cultured at constant flow phase can be regulated by shear stress, we initiated the adjusting flow phase, and shear stress in reactors was reset uniformly at 0.049 Pa (with the highest k). Results showed the carbon metabolic activity of biofilm in reactor R4 and R5 increased rapidly by day 3, and there was no significant difference between the carbon metabolic rates among the five treatments by day 14. Meanwhile, the utilization levels of polymers and carbohydrates by biofilms were significantly different among the five treatments after hydrodynamic regulations. These results suggested that the total carbon metabolic activity of biofilm can be regulated by hydrodynamics, while the divergent changes of the specific carbon source category might affect the biofilm-mediated carbon biogeochemical processes, which should be considered for the application of hydrodynamic regulation in river ecological restoration projects.

Low maintenance gravity-driven membrane filtration using hollow fibers: Effect of reducing space for biofilm growth and control strategies on permeate flux

The implementation of centralized drinking water treatment systems necessitates lower operational costs and improved biopolymer removal during ultrafiltration (UF), which can be afforded by gravity-driven membrane (GDM) filtration. However, prior to implementing GDM filtration in centralized systems, biofilm growth in compacted membrane configurations, such as inside-out hollow fiber (HF), and its impact on permeate flux need to be investigated. To this end, we operated modules with distinct limits on available space for biofilm growth: (1) outside-in 1.5 mm 7-capillary HF (non-limited), (2) inside-out 1.5 mm 7-capillary HF (limited), and (3) inside-out 0.9 mm 7-capillary HF (very limited). Here, we observed that the lower the space available for biofilm growth, the lower the permeate flux. To improve GDM performance with inside-out HF, we applied daily shear stress to the biofilm surface with forward flush (FF) or combined relaxation and forward flush (R+FF). We showed that applying shear stress to the biofilm surface was insufficient for controlling flux loss due to low available space for biofilm growth. At the experimental endpoint, we backwashed with a stepwise transmembrane pressure (TMP) increase or a single TMP on all inside-out HF modules, which removed the biofilm from its base. Afterwards, higher fluxes were yielded. We also showed that all modules exhibited a gradual increase in biopolymer removal followed by stabilization between 70 and 90%. Additionally, control of biofilm growth with surface shear stress did not affect biopolymer removal. In summary, the implementation of inside-out HF with GDM filtration is challenged by low available space for biofilm growth, but may be remedied with a regular backwash to remove biofilm from its base. We showed that a wider range of GDM applications are available; making GDM potentially compatible with implementation in centralized systems, if space limitation is taken into consideration for operation optimization.

Characterization of biofilm structure and properties via processing of 2D optical coherence tomography images in BISCAP

MOTIVATION

Processing of Optical Coherence Tomography (OCT) biofilm images is currently restricted to a set of custom-made MATLAB scripts. None of the tools currently available for biofilm image processing (including those developed for Confocal Laser Scanning Microscopy-CLSM) enable a fully automatic processing of 2D OCT images.

RESULTS

A novel software tool entitled Biofilm Imaging and Structure Classification Automatic Processor (BISCAP) is presented. It was developed specifically for the automatic processing of 2D OCT biofilm images. The proposed approach makes use of some of the key principles used in CLSM image processing, and introduces a novel thresholding algorithm and substratum detection strategy. Two complementary pixel continuity checks are executed, enabling very detailed pixel characterizations. BISCAP delivers common structural biofilm parameters and a set of processed images for biofilm analysis. A novel biofilm 'compaction parameter' is suggested. The proposed strategy was tested on a set of 300 images with highly satisfactory results obtained. BISCAP is a Python-based standalone application, not requiring any programming knowledge or property licenses, and where all operations are managed via an intuitive Graphical User Interface. The automatic nature of this image processing strategy decreases biasing problems associated to human-perception and allows a reliable comparison of outputs.

AVAILABILITY AND IMPLEMENTATION

BISCAP and a collection of biofilm images obtained from OCT scans can be found at: https://github.com/diogonarciso/BISCAP.

SUPPLEMENTARY INFORMATION

Supplementary data are available at Bioinformatics online.

Stimuli-Responsive Lysozyme Nanocapsule Engineered Microfiltration Membranes with a Dual-Function of Anti-Adhesion and Antibacteria for Biofouling Mitigation

Biofouling remains as a persistent problem impeding the applications of membranes for water and wastewater treatment. Green anti-biofouling of membranes made of natural and environmentally friendly materials and methods is a promising strategy to tackle this problem. Herein, we have developed a functionalized PVDF membrane with stimuli-responsive lysozyme nanocapsules (NCP). These nanocapsules can responsively release lysozyme according to environmental stimuli (pH and redox) induced by bacteria. Results showed that (i) the surface of the functionalized membrane with NCP had enhanced hydrophilicity, reduced roughness, and negative charge, (ii) a remarkable reduction of adsorption of proteins, polysaccharides, and bacteria was achieved by the functionalized membrane, and (iii) the colony forming unit (CFU) of bacteria on a membrane surface was reduced more than 80% within 24 h of contact. In addition, the NCP membrane showed excellent anti-biofouling activity regarding the bacterial viability being 12.5 and 8.3% on the membrane after filtration with 10⁸ CFU mL^-1 Escherichia coli and Staphylococcus aureus solution as feed, respectively. The coating layer and assembled nanocapsules endowed the membrane with improved lysozyme stability, anti-adhesion performance, and antibacterial activity. Stimuli-responsive lysozyme nanocapsule engineered microfiltration membranes show great potential for anti-biofouling in future practical application.

Physicochemical Properties of Extracellular Polymeric Substances Produced by Three Bacterial Isolates From Biofouled Reverse Osmosis Membranes

This work describes the chemical composition of extracellular polymeric substances (EPS) produced by three bacteria (RO1, RO2, and RO3) isolated from a biofouled reverse osmosis (RO) membrane. We isolated pure cultures of three bacterial strains from a 7-year-old biofouled RO module that was used in a full-scale seawater treatment plant. All the bacterial strains showed similar growth rates, biofilm formation, and produced similar quantities of proteins and polysaccharides. The gel permeation chromatography showed that the EPS produced by all the strains has a high molecular weight; however, the EPS produced by strains RO1 and RO3 showed the highest molecular weight. Fourier Transform Infrared Spectroscopy (FTIR), Proton Nuclear Magnetic Resonance (¹H NMR), and Carbon NMR (¹³C NMR) were used for a detailed characterization of the EPS. These physicochemical analyses allowed us to identify features of EPS that are important for biofilm formation. FTIR analysis indicated the presence of α-1,4 glycosidic linkages (920 cm^-1) and amide II (1,550 cm^-1) in the EPS, the presence of which has been correlated with the fouling potential of bacteria. The presence of α-glycoside linkages was further confirmed by ¹³C NMR analysis. The ¹³C NMR analysis also showed that the EPS produced by these bacteria is chemically similar to foulants obtained from biofouled RO membranes in previous studies. Therefore, our results support the hypothesis that the majority of substances that cause fouling on RO membranes originate from bacteria. Investigation using ¹H NMR showed that the EPS contained a high abundance of hydrophobic compounds, and these compounds can lead to flux decline in the membrane processes. Genome sequencing of the isolates showed that they represent novel species of bacteria belonging to the genus Bacillus. Examination of genomes showed that these bacteria carry carbohydrates-active enzymes that play a role in the production of polysaccharides. Further genomic studies allowed us to identify proteins involved in the biosynthesis of EPS and flagella involved in biofilm formation. These analyses provide a glimpse into the physicochemical properties of EPS found on the RO membrane. This knowledge can be useful in the rational design of biofilm control treatments for the RO membrane.

Membrane Fouling Phenomena in Microfluidic Systems: From Technical Challenges to Scientific Opportunities

The almost ubiquitous, though undesired, deposition and accumulation of suspended/dissolved matter on solid surfaces, known as fouling, represents a crucial issue strongly affecting the efficiency and sustainability of micro-scale reactors. Fouling becomes even more detrimental for all the applications that require the use of membrane separation units. As a matter of fact, membrane technology is a key route towards process intensification, having the potential to replace conventional separation procedures, with significant energy savings and reduced environmental impact, in a broad range of applications, from water purification to food and pharmaceutical industries. Despite all the research efforts so far, fouling still represents an unsolved problem. The complex interplay of physical and chemical mechanisms governing its evolution is indeed yet to be fully unraveled and the role played by foulants' properties or operating conditions is an area of active research where microfluidics can play a fundamental role. The aim of this review is to explore fouling through microfluidic systems, assessing the fundamental interactions involved and how microfluidics enables the comprehension of the mechanisms characterizing the process. The main mathematical models describing the fouling stages will also be reviewed and their limitations discussed. Finally, the principal dynamic investigation techniques in which microfluidics represents a key tool will be discussed, analyzing their employment to study fouling.

Roles and performance enhancement of feed spacer in spiral wound membrane modules for water treatment: A 20-year review on research evolvement

Membrane technologies have been widely applied in water treatment, wastewater reclamation and seawater desalination. Feed spacer present in spiral wound membrane (SWM) modules plays a pivotal role in creating flow channels, promoting fluid mixing and enhancing mass transfer. However, it induces the increase of feed channel pressure (FCP) drop and localized stagnant zones that provokes membrane fouling. For the first time, we comprehensively review the research evolvement on feed spacer in SWM modules for water treatment over the last 20 years, to reveal the impacts of feed spacer on the hydrodynamics and biofouling in the spacer-filled channel, and to discuss the potential approaches and current limitations for the modification of feed spacer. The research process can be divided into three phases, with research focus shifting from hydrodynamics in Phase Ⅰ (the year of 2001-2008), to biofouling in Phase Ⅱ (the year of 2009-2015), and then to novel spacer designs in Phase Ⅲ (the year of 2016-2020). The spacer configuration has a momentous impact on the hydraulic performance regarding flow velocity field, shear stress, mass transfer and FCP drop. Biofouling initially occurs on feed spacer, especially around spacer filaments and the contact zones with membrane surface, and ultimately degrades the overall membrane performance indicating the importance of controlling spacer biofouling. The modification of feed spacer is mainly achieved by altering surface chemistry or introducing novel configurations. However, the stability of spacer coating and the economy and practicality of 3D-printed spacer remain a predicament to be tackled. Future studies are suggested to focus on the standardization of testing conditions for spacer evaluation, the effect of hydrodynamics on membrane fouling control, the design and fabrication of novel feed spacer adaptable for SWM modules, the application of feed spacer for drinking water production, organic fouling control in spacer-filled channel and the role of permeate spacer on membrane performance.

Deep learning model for simulating influence of natural organic matter in nanofiltration

Controlling membrane fouling in a membrane filtration system is critical to ensure high filtration performance. A forecast of membrane fouling could enable preliminary actions to relieve the development of membrane fouling. Therefore, we established a long short-term memory (LSTM) model to investigate the variations in filtration performance and fouling growth. For data acquisition, we first conducted lab-scale membrane fouling experiments to identify the diverse fouling mechanisms of natural organic matter (NOM) in nanofiltration (NF) systems. Four types of NOMs were considered as model foulants: humic acid, bovine-serum-albumin, sodium alginate, and tannic acid. In addition, real-time 2D images were acquired via optical coherence tomography (OCT) to quantify the cake layer formed on the membrane. Subsequently, experimental data were used to train the LSTM model to predict permeate flux and fouling layer thickness as output variables. The model performance exhibited root mean square errors of <1 L/m²/h for permeate flux and <10 µm for fouling layer thickness in both the training and validation steps. In this study, we demonstrated that deep learning can be used to simulate the influence of NOMs on the NF system and also be applied to simulate other membrane processes.

Novel Magnetic Resonance Measurements of Fouling in Operating Spiral Wound Reverse Osmosis Membrane Modules

A novel magnetic resonance measurement (MRM) protocol for non-invasive monitoring of fouling in spiral wound reverse osmosis (SWRO) membrane modules is demonstrated. Sodium alginate was used to progressively foul a commercial SWRO membrane at industrially relevant operating conditions in a circulating flow loop. The MRM protocol showcased the following: (i) earlier, more sensitive detection and quantification of fouling in the membrane module compared to feed-channel pressure drop. This was achieved using appropriate detection of the total nuclear magnetic resonance (NMR) signal. (ii) 2D cross-sectional imaging of the location of the accumulated foulant material; this was preferentially located adjacent to the membrane spacer sheet nodes, which was subsequently confirmed by a module autopsy. This image contrast, which could also readily differentiate the membrane, feed spacer and permeate spacer regions, was realised based on differences in the NMR relaxation parameter, T_2,eff. (iii) High frequency acquisition of 2D cross-sectional velocity images of the module revealing very localised flow channelling in response to gradual foulant accumulation which impacted significantly on the flow pattern within the central permeate tube. Collectively this NMR/MRI measurement protocol provides a powerful analysis tool for the evolution of fouling in such complex modules, thus ultimately enabling more informed module design.

Water flushing irremovable biofilms on support material in dynamic membrane bioreactor: Formation, composition, and microbial community

Dynamic membrane bioreactors mainly rely on the in-situ formed biofilms on support materials to reject fine particles in water. The development of irremovable biofilms on support materials can decrease the cleaning efficiency when removing the unwanted biofilms with low permeability by water flushing. In the present study, the initial formed biofilms on support materials at 5-day solids retention time (SRT) were removable by water flushing. After repeated cleaning with off-line water flushing during operation, however, irremovable biofilms were developed gradually inside the mesh pores and thus, rapid rising in transmembrane pressure occurred in every one to three days. At 20-day SRT, the biofilms formed on support materials with the same operation time were still removable. Therefore, both low SRT and repeated water flushing promoted the formation of irremovable biofilms on support materials. Further study found that the composition and microbial community between the irremovable and removable biofilms were significantly different, which differentiated the biofilm adhesion and removability. The irremovable biofilms had a greater faction of proteins (49.0%) and β-d-glucopyranose polysaccharides (17.8%) in extracellular polymeric substance (EPS), while the removable biofilms had a greater fraction of α-d-glucopyranose polysaccharides. After repeated cleaning with off-line water flushing during operation, Nitrospiraceae was selectively enriched in the irremovable biofilms at a relative abundance of 39.1%, which could have resulted in the particular EPS matrix that strengthened the biofilm adhesion.

Effect of organic micropollutants on biofouling in a forward osmosis process integrating seawater desalination and wastewater reclamation

This study systematically investigated the effect of organic micropollutants (OMPs) on biofouling in forward osmosis (FO) integrating wastewater treatment and seawater dilution. Synthetic seawater (0.6 M sodium chloride) was used as a draw solution and synthetic municipal wastewater as a feed solution. To evaluate the impact of OMPs in a replicate parallel study, wastewater was supplemented with a mixture of 7 OMPs (OMPs-feed) and without OMPs (control) during 8 batch filtration cycles with feed and draw solution replacement after each filtration. The FO performance (water flux), development and microbial composition properties of biofilm layers on the wastewater side of the FO membrane were studied. Compared to the control without OMPs, the FO fed with OMPs containing wastewater showed (i) initially the same water flux and flux decline during the first filtration cycle, (ii) with increasing filtration cycle a lower flux decline and (iii) lower concentrations for the total cells, ATP, EPS carbohydrates and proteins in biofilm layers, and (iv) a lower diversity of the biofilm microbial community composition (indicating selective pressure) and (v) increasing rejection of 6 of the 7 OMPs. In essence, biofouling on the FO membrane showed (i) a lower flux decline in the presence of OMPs in the feed water and (ii) a higher OMPs rejection, both illustrating better membrane performance. This study has a significant implication for optimizing osmotic dilution in terms of FO operation and OMPs rejection.

Visualization of Bacterial Colonization and Cellular Layers in a Gut-on-a-Chip System Using Optical Coherence Tomography

Imaging of cellular layers in a gut-on-a-chip system has been confined to two-dimensional (2D)-imaging through conventional light microscopy and confocal laser scanning microscopy (CLSM) yielding three-dimensional- and 2D-cross-sectional reconstructions. However, CLSM requires staining and is unsuitable for longitudinal visualization. Here, we compare merits of optical coherence tomography (OCT) with those of CLSM and light microscopy for visualization of intestinal epithelial layers during protection by a probiotic Bifidobacterium breve strain and a simultaneous pathogen challenge by an Escherichia coli strain. OCT cross-sectional images yielded film thicknesses that coincided with end-point thicknesses derived from cross-sectional CLSM images. Light microscopy on histological sections of epithelial layers at the end-point yielded smaller layer thicknesses than OCT and CLSM. Protective effects of B. breve adhering to an epithelial layer against an E. coli challenge included the preservation of layer thickness and membrane surface coverage by epithelial cells. OCT does not require staining or sectioning, making OCT suitable for longitudinal visualization of biological films, but as a drawback, OCT does not allow an epithelial layer to be distinguished from bacterial biofilms adhering to it. Thus, OCT is ideal to longitudinally evaluate epithelial layers under probiotic protection and pathogen challenges, but proper image interpretation requires the application of a second method at the end-point to distinguish bacterial and epithelial films.

Biofouling Mitigation Approaches during Water Recovery from Fermented Broth via Forward Osmosis

Forward Osmosis (FO) is a promising technology that can offer sustainable solutions in the biorefinery wastewater and desalination fields, via low energy water recovery. However, microbial biomass and organic matter accumulation on membrane surfaces can hinder the water recovery and potentially lead to total membrane blockage. Biofouling development is a rather complex process and can be affected by several factors such as nutrient availability, chemical composition of the solutions, and hydrodynamic conditions. Therefore, operational parameters like cross-flow velocity and pH of the filtration solution have been proposed as effective biofouling mitigation strategies. Nevertheless, most of the studies have been conducted with the use of rather simple solutions. As a result, biofouling mitigation practices based on such studies might not be as effective when applying complex industrial mixtures. In the present study, the effect of cross-flow velocity, pH, and cell concentration of the feed solution was investigated, with the use of complex solutions during FO separation. Specifically, fermentation effluent and crude glycerol were used as a feed and draw solution, respectively, with the purpose of recirculating water by using FO alone. The effect of the abovementioned parameters on (i) ATP accumulation, (ii) organic foulant deposition, (iii) total water recovery, (iv) reverse glycerol flux, and (v) process butanol rejection has been studied. The main findings of the present study suggest that significant reduction of biofouling can be achieved as a combined effect of high-cross flow velocity and low feed solution pH. Furthermore, cell removal from the feed solution prior filtration may further assist the reduction of membrane blockage. These results may shed light on the challenging, but promising field of FO process dealing with complex industrial solutions.

Exploring flow-biofilm-sediment interactions: Assessment of current status and future challenges

Biofilm activities and their interactions with physical, chemical and biological processes are of great importance for a variety of ecosystem functions, impacting hydrogeomorphology, water quality and aquatic ecosystem health. Effective management of water bodies requires advancing our understanding of how flow influences biofilm-bound sediment and ecosystem processes and vice-versa. However, research on this triangle of flow-biofilm-sediment is still at its infancy. In this Review, we summarize the current state of the art and methodological approaches in the flow-biofilm-sediment research with an emphasis on biostabilization and fine sediment dynamics mainly in the benthic zone of lotic and lentic environments. Example studies of this three-way interaction across a range of spatial scales from cell (nm - µm) to patch scale (mm - dm) are highlighted in view of the urgent need for interdisciplinary approaches. As a contribution to the review, we combine a literature survey with results of a pilot experiment that was conducted in the framework of a joint workshop to explore the feasibility of asking interdisciplinary questions. Further, within this workshop various observation and measuring approaches were tested and the quality of the achieved results was evaluated individually and in combination. Accordingly, the paper concludes by highlighting the following research challenges to be considered within the forthcoming years in the triangle of flow-biofilm-sediment: i) Establish a collaborative work among hydraulic and sedimentation engineers as well as ecologists to study mutual goals with appropriate methods. Perform realistic experimental studies to test hypotheses on flow-biofilm-sediment interactions as well as structural and mechanical characteristics of the bed. ii) Consider spatially varying characteristics of flow at the sediment-water interface. Utilize combinations of microsensors and non-intrusive optical methods, such as particle image velocimetry and laser scanner to elucidate the mechanism behind biofilm growth as well as mass and momentum flux exchanges between biofilm and water. Use molecular approaches (DNA, pigments, staining, microscopy) for sophisticated community analyses. Link varying flow regimes to microbial communities (and processes) and fine sediment properties to explore the role of key microbial players and functions in enhancing sediment stability (biostabilization). iii) Link laboratory-scale observations to larger scales relevant for management of water bodies. Conduct field experiments to better understand the complex effects of variable flow and sediment regimes on biostabilization. Employ scalable and informative observation techniques (e.g., hyperspectral imaging, particle tracking) that can support predictions on the functional aspects, such as metabolic activity, bed stability, nutrient fluxes under variable regimes of flow-biofilm-sediment.

Hydrodynamic effect on biofouling of milli-labyrinth channel and bacterial communities in drip irrigation systems fed with reclaimed wastewater

The clogging of drippers due to the development of biofilms reduces the benefits and is an obstacle to the implementation of drip irrigation technology in a reclaimed water context. The narrow section and labyrinth geometry of the dripper channel results the development of a heterogeneous flow behaviours with the vortex zones which it enhance the fouling mechanisms. The objective of this study was to analyse the influence of the three dripper types, defined by their geometric and hydraulic parameters, fed with reclaimed wastewater, on the biofouling kinetics and the bacterial communities. Using optical coherence tomography, we demonstrated that the inlet of the drippers (mainly the first baffle) and vortex zones are the most sensitive area for biofouling. Drippers with the lowest Reynolds number and average cross-section velocity v (1 l·h^-1) were the most sensible to biofouling, even if detachment events seemed more frequent in this dripper type. Therefore, dripper flow path with larger v should be consider to improve the anti-clogging performance. In addition, the dripper type and the geometry of the flow path influenced the structure of the bacterial communities from dripper biofilms. Relative abundancy of filamentous bacteria belonging to Chloroflexi phylum was higher in 1 l·h^-1 drippers, which presented a higher level of biofouling. However, further research on the role of this phylum in dripper biofouling is required.

Retardation of wetting for membrane distillation by adjusting major components of seawater

Wetting by fouling is phenomenon specific to membrane distillation (MD) and are regarded as challenges to the seawater membrane distillation (SWMD) process. To understand fouling and wetting, the influence of Mg and Sr crystals, which can potentially cause scaling, as well as Ca crystals deposited on the membrane surface were investigated. Mg(OH)₂ and CaSO₄ had significant impact on fouling and wetting. Even if CaCO₃ and SrSO₄ had no effects on fouling and wetting as single salts, CaCO₃ and CaSO₄ were dominant in synthetic seawater without Mg(OH)₂. However, the occurrence of Mg(OH)₂ scales became a cause for concern if Ca ion was removed from seawater for the prevention of fouling and wetting. Therefore, Mg as well as Ca should be removed for proper fouling and wetting control. NaOH/Na₂CO₃ softening was used for the removal of Ca and Mg ions. In addition, based on the inhibition effects of Mg ions on Ca scales, a new pretreatment method involving the injection of MgCl₂ to increase the Mg /Ca ratio was examined.

Research on Forward Osmosis Membrane Technology Still Needs Improvement in Water Recovery and Wastewater Treatment

Forward osmosis (FO) has become an evolving membrane separation technology to recover water due to its strong retention capacity, sustainable membrane fouling, etc. Although a good deal of research has been extensively investigated in the past decades, major challenges still remain as follows: (1) the novel FO membrane material properties, which significantly influence the fouling of the FO membranes, the intolerance reverse solute flux (RSF), the high concentration polarization (CP), and the low permeate flux; (2) novel draw solution preparation and utilization; (3) salinity build-up in the FO system; (4) the successful implementation of the FO process. This work critically reviews the last five years’ literature in development of the novel FO membrane material, structure in modification, and preparation, including comparison and analysis on the traditional and novel draw solutes coupled with their effects on FO performance; application in wastewater treatment, especially hybrid system and integrated FO system; fouling mechanism; and cleaning strategy as discussed in the literature. The current barriers of the research results in each hotspot and the areas that can be improved are also analyzed in detail. The research hotspots in the research and development of the novel membrane materials in various countries and regions have been compared in recent years, and the work of variation in pop research hotspots in the past 10 years has been analyzed and the ideas that fill the blank gaps also have been proposed.

Differential ATR FTIR spectroscopy of membrane fouling: Contributions of the substrate/fouling films and correlations with transmembrane pressure

This study examined the formation of fouling films deposited on the surface of a polyethersulfone (PES) membrane during the filtration of alginate solutions with various ionic strengths. Membrane fouling was characterized by changes of the transmembrane pressure (TMP) and ex situ measured attenuated total reflectance (ATR) Fourier-transform IR (FTIR) spectra at varying stages of filtration runs. The ATR spectra that comprise the vibration bands characteristic of the PES substrate and the deposited film were processed taking into the gradual weakening of the PES substrate-specific bands, whose intensity was shown to depend on the wavenumber of IR radiation and the thickness of the deposited layer. Strongly linear correlations between ratios of first derivatives intensity and wavenumbers of the PES reference lines were established. Calculations of the PES bands' attenuation coefficients allowed determining the apparent thickness and ATR FTIR vibrations of the fouling films per se. Strong correlations between TMP development and ATR-determined apparent thickness of the fouling layers were observed. The intensity of ATR absorbance at 3200 cm^-1 was linearly correlated with TMP development for small TMP values before the point of rapidly developing failure of the hydraulic permeability of the system was reached.

Testing Anti-Biofilm Polymeric Surfaces: Where to Start?

Present day awareness of biofilm colonization on polymeric surfaces has prompted the scientific community to develop an ever-increasing number of new materials with anti-biofilm features. However, compared to the large amount of work put into discovering potent biofilm inhibitors, only a small number of papers deal with their validation, a critical step in the translation of research into practical applications. This is due to the lack of standardized testing methods and/or of well-controlled in vivo studies that show biofilm prevention on polymeric surfaces; furthermore, there has been little correlation with the reduced incidence of material deterioration. Here an overview of the most common methods for studying biofilms and for testing the anti-biofilm properties of new surfaces is provided.

Bacterial Density and Biofilm Structure Determined by Optical Coherence Tomography

Optical-coherence-tomography (OCT) is a non-destructive tool for biofilm imaging, not requiring staining, and used to measure biofilm thickness and putative comparison of biofilm structure based on signal intensity distributions in OCT-images. Quantitative comparison of biofilm signal intensities in OCT-images, is difficult due to the auto-scaling applied in OCT-instruments to ensure optimal quality of individual images. Here, we developed a method to eliminate the influence of auto-scaling in order to allow quantitative comparison of biofilm densities in different images. Auto- and re-scaled signal intensities could be qualitatively interpreted in line with biofilm characteristics for single and multi-species biofilms of different strains and species (cocci and rod-shaped organisms), demonstrating qualitative validity of auto- and re-scaling analyses. However, specific features of pseudomonas and oral multi-species biofilms were more prominently expressed after re-scaling. Quantitative validation was obtained by relating average auto- and re-scaled signal intensities across biofilm images with volumetric-bacterial-densities in biofilms, independently obtained using enumeration of bacterial numbers per unit biofilm volume. The signal intensities in auto-scaled biofilm images did not significantly relate with volumetric-bacterial-densities, whereas re-scaled intensities in images of biofilms of widely different strains and species increased linearly with independently determined volumetric-bacterial-densities in the biofilms. Herewith, the proposed re-scaling of signal intensity distributions in OCT-images significantly enhances the possibilities of biofilm imaging using OCT.

Biofilm compressibility in ultrafiltration: A relation between biofilm morphology, mechanics and hydraulic resistance

Poroelastic fluid-structure interaction models were coupled to experimental data to determine the effects of biofilm spatial distribution of mechanical and hydraulic properties on the biofilm hydraulic resistance and compressibility in membrane filtration processes. Biofilms were cultivated on ultrafiltration membranes for 20 and 30 days under high (0.28 bar) and low (0.06 bar) transmembrane pressure (TMP), in dead-end filtration mode. Subsequently, biofilms were subjected to a compression/relaxation cycles by step-wise TMP changes. Structural deformation of biofilms during compression was observed in-situ using optical coherence tomography. Experimental results show that the observed increase in the biofilm hydraulic resistance during compression is not necessarily accompanied by a detectable biofilm thickness reduction. A dual-layer biofilm model with a dense base and porous top layer could explain these observed results. Because porosity controls indirectly the mechanical response of biofilms under compression, results could be described without assuming a gradient in mechanical properties within the biofilm. The biofilm surface roughness did not significantly influence the water flux in this study. However, the fraction of biofilm base layer directly exposed to bulk liquid could be a good indicator in the determination of water flux. The main implications of this study for the design and operation of low-pressure membrane systems (e.g., MF and UF with fouling layer being the main filtration resistance) lays in the selection of favorable operational TMP and biofilm morphology.