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Deep mtDNA Sequence Divergences and Possible Species Radiation of Whip Spiders (Arachnida, Amblypygi, Phrynidae, Phrynus/Paraphrynus) among Caribbean Oceanic and Cave Islands. TAXONOMY 2023. [DOI: 10.3390/taxonomy3010011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/02/2023]
Abstract
Islands—whether classic oceanic islands or habitat islands such as isolated thermal vents, mountain tops, or caves—often promote the diversification of lineages that colonize them. We examined CO1 mtDNA sequence divergences within the tailless whip spider genus Phrynus Lamarck, 1809 (Amblypygi: Phrynidae) among oceanic islands and among cave ’islands´ distributed across the Caribbean archipelago and on the continental mainland. The significance of this study lies in the extensive taxon sampling of a supposedly depauperate lineage (considering its age), over a large proportion of its geographical range, and the discovery of deep mtDNA sequence divergences. We sampled thousands of specimens—and sequenced 544, including six outgroup species—across 173 localities on 17 islands (135 localities) and five countries on the North to South American mainland (38 localities), including a total of 63 caves. Classical taxonomy identified ten named Phrynus and two Paraphrynus Moreno, 1940 species. Paraphrynus seems to be paraphyletic and nested in Phrynus. Uncorrected genetic distances within named species and among morphological species ranged up to 15% and 19%, respectively. Geographic distances explained a significant portion of genetic distances on islands (19%, among both subterranean and epigean specimens), and for epigean specimens on the mainland (27%). Species delimitation analyses indicated that the 12 named species harbored from 66 to well over 100 putative species. The highest number of species was indicated by the GMYC method (114 species) while the Bayesian Poisson tree processes (bPTP) and the BP&P relaying on the Markov chain Monte Carlo Bayesian Phylogenetic model estimated an upper level of 110 species. On the other hand, the recently recommended and relatively conservative distance-based (phylogeny free) ASAP model has the greatest support for 73 species. In either case, nearly all putative species are tightly limited to a single locality, often a small cave system, and sometimes to the surrounding epigean area. Caribbean Phrynus diversity has likely been vastly underestimated, likely due to both morphological crypsis and the ignorance of Caribbean cave fauna. Although mtDNA sequences can suggest species limits, nuclear DNA sequencing and detailed morphological research are necessary to corroborate them and explore whether this phenomenon constitutes species radiation or perhaps just mtDNA divergences as a consequence of, for example, stationary females and actively dispersing males.
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Baker CM, Ballesteros JA, Aharon S, Gainett G, Armiach Steinpress I, Wizen G, Sharma PP, Gavish-Regev E. Recent speciation and phenotypic plasticity within a parthenogenetic lineage of Levantine whip spiders (Chelicerata: Amblypygi: Charinidae). Mol Phylogenet Evol 2022; 175:107560. [PMID: 35779767 DOI: 10.1016/j.ympev.2022.107560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 05/25/2022] [Accepted: 06/02/2022] [Indexed: 10/17/2022]
Abstract
Caves constitute ideal study systems for investigating adaptation and speciation, as the abiotic conditions shared by aphotic habitats exert a set of environmental filters on their communities. Arachnids constitute an important component of many cave ecosystems worldwide. We investigated the population genomics of two whip spider species: Sarax ioanniticus, a widely distributed parthenogenetic species found across the eastern Mediterranean; and S. israelensis, a recently described troglomorphic species that is endemic to caves in Israel. Here, we show that S. israelensis is completely genetically distinct from S. ioanniticus and most likely also constitutes a parthenogen. Counterintuitively, despite the lack of genetic variability within S. ioanniticus and S. israelensis, we discovered considerable variation in the degree of median eye reduction, particularly in the latter species. Natural history data from captive-bred specimens of S. israelensis validated the interpretation of parthenogenesis. Our results are most consistent with a scenario of a sexual ancestral species that underwent speciation, followed by independent transitions to apomictic parthenogenesis in each of the two daughter species. Moreover, the lack of genetic variability suggests that variation in eye morphology in S. israelensis is driven exclusively by epigenetic mechanisms.
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Affiliation(s)
- Caitlin M Baker
- Department of Integrative Biology, University of Madison-Wisconsin, Madison, WI 53706, United States
| | | | - Shlomi Aharon
- The National Natural History Collections, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel; Department of Ecology, Evolution & Behavior, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel
| | - Guilherme Gainett
- Department of Integrative Biology, University of Madison-Wisconsin, Madison, WI 53706, United States
| | - Igor Armiach Steinpress
- The National Natural History Collections, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel; Department of Ecology, Evolution & Behavior, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel
| | - Gil Wizen
- 602-52 Park St. E, Mississauga, Ontario, L5G 1M1, Canada
| | - Prashant P Sharma
- Department of Integrative Biology, University of Madison-Wisconsin, Madison, WI 53706, United States
| | - Efrat Gavish-Regev
- The National Natural History Collections, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel.
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Single-Island Endemism despite Repeated Dispersal in Caribbean Micrathena (Araneae: Araneidae): An Updated Phylogeographic Analysis. DIVERSITY 2022. [DOI: 10.3390/d14020128] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Island biogeographers have long sought to elucidate the mechanisms behind biodiversity genesis. The Caribbean presents a unique stage on which to analyze the diversification process, due to the geologic diversity among the islands and the rich biotic diversity with high levels of island endemism. The colonization of such islands may reflect geologic heterogeneity through vicariant processes and/ or involve long-distance overwater dispersal. Here, we explore the phylogeography of the Caribbean and proximal mainland spiny orbweavers (Micrathena, Araneae), an American spider lineage that is the most diverse in the tropics and is found throughout the Caribbean. We specifically test whether the vicariant colonization via the contested GAARlandia landbridge (putatively emergent 33–35 mya), long-distance dispersal (LDD), or both processes best explain the modern Micrathena distribution. We reconstruct the phylogeny and test biogeographic hypotheses using a ‘target gene approach’ with three molecular markers (CO1, ITS-2, and 16S rRNA). Phylogenetic analyses support the monophyly of the genus but reject the monophyly of Caribbean Micrathena. Biogeographical analyses support five independent colonizations of the region via multiple overwater dispersal events, primarily from North/Central America, although the genus is South American in origin. There is no evidence for dispersal to the Greater Antilles during the timespan of GAARlandia. Our phylogeny implies greater species richness in the Caribbean than previously known, with two putative species of M. forcipata that are each single-island endemics, as well as deep divergences between the Mexican and Floridian M. sagittata. Micrathena is an unusual lineage among arachnids, having colonized the Caribbean multiple times via overwater dispersal after the submergence of GAARlandia. On the other hand, single-island endemism and undiscovered diversity are nearly universal among all but the most dispersal-prone arachnid groups in the Caribbean.
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Seiter M, Strobl L, Schwaha T, Prendini L, Schramm FD. Morphometry of the pedipalp patella provides new characters for species-level taxonomy in whip spiders (Arachnida, Amblypygi): A test case with description of a new species of Phrynus. ZOOL ANZ 2022. [DOI: 10.1016/j.jcz.2022.02.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Isaia M, Arnedo MA, Mammola S. A multi-layered approach uncovers overlooked taxonomic and physiological diversity in Alpine subterranean spiders (Araneae: Linyphiidae: Troglohyphantes). INVERTEBR SYST 2022. [DOI: 10.1071/is21054] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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6
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Reyes Lerma AC, Šťáhlavský F, Seiter M, Carabajal Paladino LZ, Divišová K, Forman M, Sember A, Král J. Insights into the Karyotype Evolution of Charinidae, the Early-Diverging Clade of Whip Spiders (Arachnida: Amblypygi). Animals (Basel) 2021; 11:3233. [PMID: 34827965 PMCID: PMC8614469 DOI: 10.3390/ani11113233] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Revised: 11/05/2021] [Accepted: 11/09/2021] [Indexed: 11/16/2022] Open
Abstract
Whip spiders (Amblypygi) represent an ancient order of tetrapulmonate arachnids with a low diversity. Their cytogenetic data are confined to only a few reports. Here, we analyzed the family Charinidae, a lineage almost at the base of the amblypygids, providing an insight into the ancestral traits and basic trajectories of amblypygid karyotype evolution. We performed Giemsa staining, selected banding techniques, and detected 18S ribosomal DNA and telomeric repeats by fluorescence in situ hybridization in four Charinus and five Sarax species. Both genera exhibit a wide range of diploid chromosome numbers (2n = 42-76 and 22-74 for Charinus and Sarax, respectively). The 2n reduction was accompanied by an increase of proportion of biarmed elements. We further revealed a single NOR site (probably an ancestral condition for charinids), the presence of a (TTAGG)n telomeric motif localized mostly at the chromosome ends, and an absence of heteromorphic sex chromosomes. Our data collectively suggest a high pace of karyotype repatterning in amblypygids, with probably a high ancestral 2n and its subsequent gradual reduction by fusions, and the action of pericentric inversions, similarly to what has been proposed for neoamblypygids. The possible contribution of fissions to charinid karyotype repatterning, however, cannot be fully ruled out.
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Affiliation(s)
- Azucena Claudia Reyes Lerma
- Laboratory of Arachnid Cytogenetics, Department of Genetics and Microbiology, Faculty of Science, Charles University, Viničná 5, 128 44 Prague, Czech Republic; (A.C.R.L.); (K.D.); (M.F.); (J.K.)
| | - František Šťáhlavský
- Department of Zoology, Faculty of Science, Charles University, Viničná 7, 128 44 Prague, Czech Republic;
| | - Michael Seiter
- Unit Integrative Zoology, Department of Evolutionary Biology, University of Vienna, Djerassiplatz 1, 1030 Vienna, Austria;
- Natural History Museum Vienna, 3. Zoology (Invertebrates), Burgring 7, 1010 Vienna, Austria
| | - Leonela Zusel Carabajal Paladino
- Biology Centre of the Czech Academy of Sciences, Institute of Entomology, Branišovská 31, 370 05 České Budějovice, Czech Republic;
- Arthropod Genetics Group, The Pirbright Institute, Ash Road, Pirbright, Woking GU24 0NF, UK
| | - Klára Divišová
- Laboratory of Arachnid Cytogenetics, Department of Genetics and Microbiology, Faculty of Science, Charles University, Viničná 5, 128 44 Prague, Czech Republic; (A.C.R.L.); (K.D.); (M.F.); (J.K.)
| | - Martin Forman
- Laboratory of Arachnid Cytogenetics, Department of Genetics and Microbiology, Faculty of Science, Charles University, Viničná 5, 128 44 Prague, Czech Republic; (A.C.R.L.); (K.D.); (M.F.); (J.K.)
| | - Alexandr Sember
- Laboratory of Arachnid Cytogenetics, Department of Genetics and Microbiology, Faculty of Science, Charles University, Viničná 5, 128 44 Prague, Czech Republic; (A.C.R.L.); (K.D.); (M.F.); (J.K.)
- Laboratory of Fish Genetics, Institute of Animal Physiology and Genetics, Czech Academy of Sciences, Rumburská 89, 277 21 Liběchov, Czech Republic
| | - Jiří Král
- Laboratory of Arachnid Cytogenetics, Department of Genetics and Microbiology, Faculty of Science, Charles University, Viničná 5, 128 44 Prague, Czech Republic; (A.C.R.L.); (K.D.); (M.F.); (J.K.)
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De Miranda GS, Giupponi APL, Scharff N, Prendini L. Phylogeny and biogeography of the pantropical whip spider family Charinidae (Arachnida: Amblypygi). Zool J Linn Soc 2021. [DOI: 10.1093/zoolinnean/zlaa101] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Abstract
The present contribution addresses the phylogeny and biogeography of the pantropical whip spider family Charinidae Quintero, 1986, the most species-rich in the arachnid order Amblypygi Thorell, 1883, based on morphology and multilocus DNA sequences, analysed simultaneously using parsimony, maximum likelihood and Bayesian inference. The morphological matrix comprises 138 characters, scored for four outgroup taxa and 103 ingroup terminals representing all genera and 64% of the species of Charinidae. The multilocus dataset comprises sequences from two nuclear and three mitochondrial gene loci for four outgroup taxa and 48 ingroup representing 30 (23%) taxa of Charinidae. Charinidae are monophyletic, with Weygoldtia Miranda et al., 2018 sister to a monophyletic group comprising Charinus Simon, 1892 and Sarax Simon, 1892, neither of which are reciprocally monophyletic. Charinidae diverged from other amblypygid families in the Late Carboniferous, c. 318 Mya, on the supercontinent Pangaea. Weygoldtia diverged from the common ancestor of Charinus and Sarax during the Late Permian, c. 257 Mya, when changes in climate reduced tropical forests. The divergence of Charinus and Sarax coincides with the fragmentation of Pangaea, c. 216 Mya. Sarax colonized South-East Asia via Australia. The charinid fauna of New Caledonia originated before the Oligocene, when the island separated from Australia, c. 80 Mya.
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Affiliation(s)
- Gustavo Silva De Miranda
- Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark (Zoological Museum), University of Copenhagen, Denmark
- Entomology Department, National Museum of Natural History, Smithsonian Institution, Washington,DC 20560, USA
| | - Alessandro P L Giupponi
- Laboratório de Referência Nacional em Vetores das Riquetsioses, LIRN-FIOCRUZ, Rio de Janeiro,RJ, Brazil
| | - Nikolaj Scharff
- Entomology Department, National Museum of Natural History, Smithsonian Institution, Washington,DC 20560, USA
- Zoology Section, Natural History Museum of Denmark, University of Copenhagen, Denmark
| | - Lorenzo Prendini
- Division of Invertebrate Zoology, American Museum of Natural History, New York,NY 10024-5192, USA
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Mammola S, Lunghi E, Bilandžija H, Cardoso P, Grimm V, Schmidt SI, Hesselberg T, Martínez A. Collecting eco-evolutionary data in the dark: Impediments to subterranean research and how to overcome them. Ecol Evol 2021; 11:5911-5926. [PMID: 34141192 PMCID: PMC8207145 DOI: 10.1002/ece3.7556] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Revised: 03/23/2021] [Accepted: 03/25/2021] [Indexed: 12/25/2022] Open
Abstract
Caves and other subterranean habitats fulfill the requirements of experimental model systems to address general questions in ecology and evolution. Yet, the harsh working conditions of these environments and the uniqueness of the subterranean organisms have challenged most attempts to pursuit standardized research.Two main obstacles have synergistically hampered previous attempts. First, there is a habitat impediment related to the objective difficulties of exploring subterranean habitats and our inability to access the network of fissures that represents the elective habitat for the so-called "cave species." Second, there is a biological impediment illustrated by the rarity of most subterranean species and their low physiological tolerance, often limiting sample size and complicating laboratory experiments.We explore the advantages and disadvantages of four general experimental setups (in situ, quasi in situ, ex situ, and in silico) in the light of habitat and biological impediments. We also discuss the potential of indirect approaches to research. Furthermore, using bibliometric data, we provide a quantitative overview of the model organisms that scientists have exploited in the study of subterranean life.Our over-arching goal is to promote caves as model systems where one can perform standardized scientific research. This is important not only to achieve an in-depth understanding of the functioning of subterranean ecosystems but also to fully exploit their long-discussed potential in addressing general scientific questions with implications beyond the boundaries of this discipline.
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Affiliation(s)
- Stefano Mammola
- Laboratory for Integrative Biodiversity Research (LIBRe)Finnish Museum of Natural History (LUOMUS)University of HelsinkiHelsinkiFinland
- Dark‐MEG: Molecular Ecology GroupWater Research Institute (IRSA)National Research Council (CNR)VerbaniaItaly
| | - Enrico Lunghi
- Key Laboratory of the Zoological Systematics and EvolutionInstitute of ZoologyChinese Academy of SciencesBeijingChina
- Museo di Storia Naturale dell'Università degli Studi di Firenze“La Specola”FirenzeItaly
| | - Helena Bilandžija
- Department of Molecular BiologyRudjer Boskovic InstituteZagrebCroatia
| | - Pedro Cardoso
- Laboratory for Integrative Biodiversity Research (LIBRe)Finnish Museum of Natural History (LUOMUS)University of HelsinkiHelsinkiFinland
| | - Volker Grimm
- Department of Ecological ModellingHelmholtz Centre for Environmental Research – UFZLeipzigGermany
- Plant Ecology and Nature ConservationUniversity of PotsdamPotsdamGermany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
| | - Susanne I. Schmidt
- Institute of HydrobiologyBiology Centre CASČeské BudějoviceCzech Republic
| | | | - Alejandro Martínez
- Dark‐MEG: Molecular Ecology GroupWater Research Institute (IRSA)National Research Council (CNR)VerbaniaItaly
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9
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Schramm FD, Valdez-Mondragón A, Prendini L. Volcanism and palaeoclimate change drive diversification of the world's largest whip spider (Amblypygi). Mol Ecol 2021; 30:2872-2890. [PMID: 33881187 DOI: 10.1111/mec.15924] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 04/11/2021] [Accepted: 04/14/2021] [Indexed: 11/27/2022]
Abstract
The tropics contain many of the most biodiverse regions on Earth but the processes responsible for generating this diversity remain poorly understood. This study investigated the drivers of diversification in arthropods with stenotopic ecological requirements and limited dispersal capability using as a model the monotypic whip spider (Amblypygi) genus Acanthophrynus, widespread in the tropical deciduous forests of Mexico. We hypothesized that for these organisms, the tropical deciduous forests serve as a conduit for dispersal, with their disappearance imposing barriers. Given that these forests are located in a region of complex geological history and that they fluctuated in extent during the Pliocene-Pleistocene glacial/interglacial cycles we combine molecular divergence dating, palaeoclimatic niche modelling and ancestral area reconstruction to test if and when habitat fragmentation promoted diversification in Acanthophrynus. Concomitant with the expected role of landscape change, we demonstrate that orogeny of the Trans-Mexican Volcanic Belt, in the Late Miocene or Early Pliocene (6.95-5.21 million years ago), drove the earliest divergence of Acanthophrynus by vicariance. Similarly, as expected, the later onset of glaciations strongly impacted diversification. Whereas a more stable climate in the southern part of the distribution enabled further diversification, a marked loss of suitable habitat during the glaciations only allowed dispersal and diversification in the north to occur later, resulting in a lower overall diversity in this region. Barriers and diversification patterns identified in Acanthophrynus are reflected in the phylogeography of codistributed vertebrates and arthropods, emphasizing the profound impact of Trans-Mexican Volcanic Belt orogeny and glacial/interglacial cycles as drivers of diversification in the Mexican Neotropics.
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Affiliation(s)
- Frederic D Schramm
- Arachnology Lab, Division of Invertebrate Zoology, American Museum of Natural History, New York, NY, USA
| | - Alejandro Valdez-Mondragón
- Laboratory of Arachnology (LATLAX), Laboratorio Regional de Biodiversidad y Cultivo de Tejidos Vegetales (LBCTV), Instituto de Biología, Universidad Nacional Autónoma de México (UNAM), sede Tlaxcala, Tlaxcala, Mexico
| | - Lorenzo Prendini
- Arachnology Lab, Division of Invertebrate Zoology, American Museum of Natural History, New York, NY, USA
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10
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Reveillion F, Wattier R, Montuire S, Carvalho LS, Bollache L. Cryptic diversity within three South American whip spider species (Arachnida, Amblypygi). Zool Res 2021; 41:595-598. [PMID: 32738110 PMCID: PMC7475008 DOI: 10.24272/j.issn.2095-8137.2020.068] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022] Open
Abstract
Cryptic diversity (CD), the presence of highly divergent phylogenetic lineages within closed morphological species, has been documented for many taxa. Great arachnid orders such as Araneae or Scorpiones are well studied and many cases of CD have been described therein; to date, however, related research on smaller arachnid orders, such as whip spiders (Amblypygi), remains lacking. In the current study, we investigated CD based on cytochrome oxidase 1 (COI) in three nominal species of the genus Heterophrynus (H. alces, H. batesii, and H. longicornis), represented by 65 specimens. The sequences were compared using three different methods. All three species showed geographically structured CD. Thus, given its existence in this genus, it is important that CD and its spatial distribution be considered in future studies and possible conservation projects.
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Affiliation(s)
- Florian Reveillion
- Université de Bourgogne Franche Comté, Dijon 21000, France.,Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, Besançon Cedex 25030, France
| | - Remi Wattier
- Université de Bourgogne Franche Comté, Dijon 21000, France.,Laboratoire Biogeosciences, UMR CNRS 6282, Université de Bourgogne Franche-Comté, Dijon 21000, France
| | - Sophie Montuire
- Laboratoire Biogeosciences, UMR CNRS 6282, Université de Bourgogne Franche-Comté, Dijon 21000, France.,EPHE, PSL University, Paris 75014, France
| | - Leonardo Sousa Carvalho
- Universidade Federal do Piauí, Campus Amílcar Ferreira Sobral, Floriano, Piauí 64800-606, Brazil
| | - Loïc Bollache
- Université de Bourgogne Franche Comté, Dijon 21000, France.,Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, Besançon Cedex 25030, France. E-mail:
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11
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Gainett G, Ballesteros JA, Kanzler CR, Zehms JT, Zern JM, Aharon S, Gavish-Regev E, Sharma PP. Systemic paralogy and function of retinal determination network homologs in arachnids. BMC Genomics 2020; 21:811. [PMID: 33225889 PMCID: PMC7681978 DOI: 10.1186/s12864-020-07149-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Accepted: 10/13/2020] [Indexed: 01/23/2023] Open
Abstract
BACKGROUND Arachnids are important components of cave ecosystems and display many examples of troglomorphisms, such as blindness, depigmentation, and elongate appendages. Little is known about how the eyes of arachnids are specified genetically, let alone the mechanisms for eye reduction and loss in troglomorphic arachnids. Additionally, duplication of Retinal Determination Gene Network (RDGN) homologs in spiders has convoluted functional inferences extrapolated from single-copy homologs in pancrustacean models. RESULTS We investigated a sister species pair of Israeli cave whip spiders, Charinus ioanniticus and C. israelensis (Arachnopulmonata, Amblypygi), of which one species has reduced eyes. We generated embryonic transcriptomes for both Amblypygi species, and discovered that several RDGN homologs exhibit duplications. We show that duplication of RDGN homologs is systemic across arachnopulmonates (arachnid orders that bear book lungs), rather than being a spider-specific phenomenon. A differential gene expression (DGE) analysis comparing the expression of RDGN genes in field-collected embryos of both species identified candidate RDGN genes involved in the formation and reduction of eyes in whip spiders. To ground bioinformatic inference of expression patterns with functional experiments, we interrogated the function of three candidate RDGN genes identified from DGE using RNAi in the spider Parasteatoda tepidariorum. We provide functional evidence that one of these paralogs, sine oculis/Six1 A (soA), is necessary for the development of all arachnid eye types. CONCLUSIONS Our work establishes a foundation to investigate the genetics of troglomorphic adaptations in cave arachnids, and links differential gene expression to an arthropod eye phenotype for the first time outside of Pancrustacea. Our results support the conservation of at least one RDGN component across Arthropoda and provide a framework for identifying the role of gene duplications in generating arachnid eye diversity.
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Affiliation(s)
- Guilherme Gainett
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, 53706, USA.
| | - Jesús A Ballesteros
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, 53706, USA.
| | - Charlotte R Kanzler
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, 53706, USA
| | - Jakob T Zehms
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, 53706, USA
| | - John M Zern
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, 53706, USA
| | - Shlomi Aharon
- National Natural History Collections, The Hebrew University of Jerusalem , Jerusalem, 9190401, Israel
| | - Efrat Gavish-Regev
- National Natural History Collections, The Hebrew University of Jerusalem , Jerusalem, 9190401, Israel
| | - Prashant P Sharma
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, 53706, USA
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12
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Mammola S, Hesselberg T, Lunghi E. A trade‐off between latitude and elevation contributes to explain range segregation of broadly distributed cave‐dwelling spiders. J ZOOL SYST EVOL RES 2020. [DOI: 10.1111/jzs.12432] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Stefano Mammola
- Laboratory for Integrative Biodiversity Research (LIBRe) Finnish Museum of Natural History (LUOMUS) University of Helsinki Helsinki Finland
- Molecular Ecology Group (MEG) Water Research Institute (IRSA) National Research Council (CNR) Verbania Pallanza Italy
| | | | - Enrico Lunghi
- Key Laboratory of the Zoological Systematics and Evolution Institute of Zoology Chinese Academy of Sciences Beijing China
- Museo di Storia Naturale dell'Università degli Studi di Firenze Sezione di Zoologia "La Specola" Firenze Italy
- Natural Oasis Prato Italy
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13
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Chamberland L, Salgado-Roa FC, Basco A, Crastz-Flores A, Binford GJ, Agnarsson I. Phylogeography of the widespread Caribbean spiny orb weaver Gasteracantha cancriformis. PeerJ 2020; 8:e8976. [PMID: 32391201 PMCID: PMC7196328 DOI: 10.7717/peerj.8976] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Accepted: 03/24/2020] [Indexed: 12/18/2022] Open
Abstract
BACKGROUND Modern molecular analyses are often inconsistent with pre-cladistic taxonomic hypotheses, frequently indicating higher richness than morphological taxonomy estimates. Among Caribbean spiders, widespread species are relatively few compared to the prevalence of single island endemics. The taxonomic hypothesis Gasteracantha cancriformis circumscribes a species with profuse variation in size, color and body form. Distributed throughout the Neotropics, G. cancriformis is the only morphological species of Gasteracantha in the New World in this globally distributed genus. METHODS We inferred phylogenetic relationships across Neotropical populations of Gasteracantha using three target genes. Within the Caribbean, we estimated genetic diversity, population structure, and gene flow among island populations. RESULTS Our findings revealed a single widespread species of Gasteracantha throughout the Caribbean, G. cancriformis, while suggesting two recently divergent mainland populations that may represent separate species, diverging linages, or geographically isolated demes. The concatenated and COI (Cytochrome c oxidase subunit 1) phylogeny supported a Caribbean clade nested within the New World. Genetic variability was high between island populations for our COI dataset; however, gene flow was also high, especially between large, adjacent islands. We found structured genetic and morphological variation within G. cancriformis island populations; however, this variation does not reflect genealogical relationships. Rather, isolation by distance and local morphological adaptation may explain the observed variation.
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Affiliation(s)
- Lisa Chamberland
- Department of Biology, University of Vermont, Burlington, VT, USA
| | - Fabian C. Salgado-Roa
- Biology Program, Faculty of Natural Sciences and Mathematics, Universidad del Rosario, Bogota, Colombia
| | - Alma Basco
- University of Puerto Rico at Rio Piedras, San Juan, Puerto Rico
| | | | | | - Ingi Agnarsson
- Department of Biology, University of Vermont, Burlington, VT, USA
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
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Maldonado E, Rangel-Huerta E, Rodriguez-Salazar E, Pereida-Jaramillo E, Martínez-Torres A. Subterranean life: Behavior, metabolic, and some other adaptations of Astyanax cavefish. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 2020; 334:463-473. [PMID: 32346998 DOI: 10.1002/jez.b.22948] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Revised: 03/25/2020] [Accepted: 04/04/2020] [Indexed: 12/20/2022]
Abstract
The ability of fishes to adapt to any aquatic environment seems limitless. It is enthralling how new species keep appearing at the deep sea or in subterranean environments. There are close to 230 known species of cavefishes, still today the best-known cavefish is Astyanax mexicanus, a Characid that has become a model organism, and has been studied and scrutinized since 1936. There are two morphotypes for A. mexicanus, a surface fish and a cavefish. The surface fish lives in central and northeastern Mexico and south of the United States, while the cavefish is endemic to the "Sierra del Abra-Tanchipa region" in northeast Mexico. The extensive genetic and genomic analysis depicts a complex origin for Astyanax cavefish, with multiple cave invasions and persistent gene flow among cave populations. The surface founder population prevails in the same region where the caves are. In this review, we focus on both morphotype's main morphological and physiological differences, but mainly in recent discoveries about behavioral and metabolic adaptations for subterranean life. These traits may not be as obvious as the troglomorphic characteristics, but are key to understand how Astyanax cavefish thrives in this environment of perpetual darkness.
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Affiliation(s)
- Ernesto Maldonado
- EvoDevo Research Group, Unidad de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
| | - Emma Rangel-Huerta
- EvoDevo Research Group, Unidad de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
| | - Elizabeth Rodriguez-Salazar
- EvoDevo Research Group, Unidad de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
| | - Elizabeth Pereida-Jaramillo
- Laboratorio de Neurobiología Molecular y Celular, Departamento de Neurobiología Celular y Molecular, Instituto de Neurobiología, Universidad Nacional Autónoma de México, Santiago de Querétaro, México
| | - Ataulfo Martínez-Torres
- Laboratorio de Neurobiología Molecular y Celular, Departamento de Neurobiología Celular y Molecular, Instituto de Neurobiología, Universidad Nacional Autónoma de México, Santiago de Querétaro, México
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15
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Mammola S, Arnedo MA, Fišer C, Cardoso P, Dejanaz AJ, Isaia M. Environmental filtering and convergent evolution determine the ecological specialization of subterranean spiders. Funct Ecol 2020. [DOI: 10.1111/1365-2435.13527] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Stefano Mammola
- Molecular Ecology Group (MEG) IRSA—Water Research Institute National Research Council Verbania Pallanza Italy
- Laboratory for Integrative Biodiversity Research (LIBRe) Finnish Museum of Natural History (LUOMUS) University of Helsinki Helsinki Finland
- Department of Life Sciences and Systems Biology University of Turin Turin Italy
| | - Miquel A. Arnedo
- Department of Evolutionary Biology, Ecology and Environmental Sciences & Biodiversity Research Institute University of Barcelona Barcelona Spain
| | - Cene Fišer
- Department of Biology Biotechnical Faculty University of Ljubljana Ljubljana Slovenia
| | - Pedro Cardoso
- Laboratory for Integrative Biodiversity Research (LIBRe) Finnish Museum of Natural History (LUOMUS) University of Helsinki Helsinki Finland
| | - Andrea J. Dejanaz
- Department of Life Sciences and Systems Biology University of Turin Turin Italy
| | - Marco Isaia
- Department of Life Sciences and Systems Biology University of Turin Turin Italy
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16
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Crews SC, Esposito LA. Towards a synthesis of the Caribbean biogeography of terrestrial arthropods. BMC Evol Biol 2020; 20:12. [PMID: 31980017 PMCID: PMC6979080 DOI: 10.1186/s12862-019-1576-z] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2019] [Accepted: 12/30/2019] [Indexed: 02/01/2023] Open
Abstract
BACKGROUND The immense geologic and ecological complexity of the Caribbean has created a natural laboratory for interpreting when and how organisms disperse through time and space. However, competing hypotheses compounded with this complexity have resulted in a lack of unifying principles of biogeography for the region. Though new data concerning the timing of geologic events and dispersal events are emerging, powerful new analytical tools now allow for explicit hypothesis testing. Arthropods, with varying dispersal ability and high levels of endemism in the Caribbean, are an important, albeit understudied, biogeographic model system. Herein, we include a comprehensive analysis of every publicly available genetic dataset (at the time of writing) of terrestrial Caribbean arthropod groups using a statistically robust pipeline to explicitly test the current extent of biogeographic hypotheses for the region. RESULTS Our findings indicate several important biogeographic generalizations for the region: the South American continent is the predominant origin of Caribbean arthropod fauna; GAARlandia played a role for some taxa in aiding dispersal from South America to the Greater Antilles; founder event dispersal explains the majority of dispersal events by terrestrial arthropods, and distance between landmasses is important for dispersal; most dispersal events occurred via island hopping; there is evidence of 'reverse' dispersal from islands to the mainland; dispersal across the present-day Isthmus of Panama generally occurred prior to 3 mya; the Greater Antilles harbor more lineage diversity than the Lesser Antilles, and the larger Greater Antilles typically have greater lineage diversity than the smaller islands; basal Caribbean taxa are primarily distributed in the Greater Antilles, the basal-most being from Cuba, and derived taxa are mostly distributed in the Lesser Antilles; Jamaican taxa are usually endemic and monophyletic. CONCLUSIONS Given the diversity and deep history of terrestrial arthropods, incongruence of biogeographic patterns is expected, but focusing on both similarities and differences among divergent taxa with disparate life histories emphasizes the importance of particular qualities responsible for resulting diversification patterns. Furthermore, this study provides an analytical toolkit that can be used to guide researchers interested in answering questions pertaining to Caribbean biogeography using explicit hypothesis testing.
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Affiliation(s)
- Sarah C Crews
- California Academy of Sciences, Institute for Biodiversity Science and Sustainability, 55 Music Concourse Drive, San Francisco, CA, 94118, USA
| | - Lauren A Esposito
- California Academy of Sciences, Institute for Biodiversity Science and Sustainability, 55 Music Concourse Drive, San Francisco, CA, 94118, USA.
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Mammola S, Cardoso P, Angyal D, Balázs G, Blick T, Brustel H, Carter J, Ćurčić S, Danflous S, Dányi L, Déjean S, Deltshev C, Elverici M, Fernández J, Gasparo F, Komnenov M, Komposch C, Kováč L, Kunt KB, Mock A, Moldovan OT, Naumova M, Pavlek M, Prieto CE, Ribera C, Rozwałka R, Růžička V, Vargovitsh RS, Zaenker S, Isaia M. Local- versus broad-scale environmental drivers of continental β-diversity patterns in subterranean spider communities across Europe. Proc Biol Sci 2019; 286:20191579. [PMID: 31662080 DOI: 10.1098/rspb.2019.1579] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
Abstract
Macroecologists seek to identify drivers of community turnover (β-diversity) through broad spatial scales. However, the influence of local habitat features in driving broad-scale β-diversity patterns remains largely untested, owing to the objective challenges of associating local-scale variables to continental-framed datasets. We examined the relative contribution of local- versus broad-scale drivers of continental β-diversity patterns, using a uniquely suited dataset of cave-dwelling spider communities across Europe (35-70° latitude). Generalized dissimilarity modelling showed that geographical distance, mean annual temperature and size of the karst area in which caves occurred drove most of β-diversity, with differential contributions of each factor according to the level of subterranean specialization. Highly specialized communities were mostly influenced by geographical distance, while less specialized communities were mostly driven by mean annual temperature. Conversely, local-scale habitat features turned out to be meaningless predictors of community change, which emphasizes the idea of caves as the human accessible fraction of the extended network of fissures that more properly represents the elective habitat of the subterranean fauna. To the extent that the effect of local features turned to be inconspicuous, caves emerge as experimental model systems in which to study broad biological patterns without the confounding effect of local habitat features.
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Affiliation(s)
- Stefano Mammola
- Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy.,LIBRe-Laboratory for Integrative Biodiversity Research, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland
| | - Pedro Cardoso
- LIBRe-Laboratory for Integrative Biodiversity Research, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland
| | - Dorottya Angyal
- UMDI, Faculty of Sciences, UNAM National Autonomous University of Mexico, Sisal, Mexico.,Department of Zoology, Hungarian Natural History Museum, Budapest, Hungary
| | - Gergely Balázs
- Department of Systematic Zoology and Ecology, Eötvös Loránd University, Budapest, Hungary
| | - Theo Blick
- Independent Researcher, Hummeltal, Germany
| | | | | | - Srećko Ćurčić
- Institute of Zoology, University of Belgrade-Faculty of Biology, Belgrade, Serbia
| | - Samuel Danflous
- Conservatoire d'Espaces Naturels de Midi-Pyrénées, Toulouse, France
| | - László Dányi
- Department of Zoology, Hungarian Natural History Museum, Budapest, Hungary
| | - Sylvain Déjean
- Conservatoire d'Espaces Naturels de Midi-Pyrénées, Toulouse, France
| | - Christo Deltshev
- National Museum of Natural History, Bulgarian Academy of Sciences, Sofia, Bulgaria
| | - Mert Elverici
- Department of Biology, Faculty of Science and Arts, Erzincan Binali Yıldırım University, Erzincan, Turkey
| | | | - Fulvio Gasparo
- Commissione Grotte 'E. Boegan', Società Alpina delle Giulie, C.A.I., Trieste, Italy
| | - Marjan Komnenov
- Independent Researcher, Blwd Kuzman Josifovski Pitu, Skopje, Republic of North Macedonia
| | - Christian Komposch
- OEKOTEAM - Institute for Animal Ecology and Landscape Planning, Graz, Austria
| | | | - Kadir Boğaç Kunt
- Department of Biology, Faculty of Science, Eskişehir Technical University, Eskişehir, Turkey.,Zoological Collection of Cyprus Wildlife Research Institute, Taşkent, Kyrenia, Cyprus
| | - Andrej Mock
- Pavol Jozef Šafárik University, Košice, Slovakia
| | - Oana Teodora Moldovan
- Emil Racovitza Institute of Speleology, Cluj-Napoca, Romania.,Romanian Institute of Science and Technology, Cluj-Napoca, Romania
| | - Maria Naumova
- Institute of Biodiversity and Ecosystem Research, Sofia, Bulgaria
| | - Martina Pavlek
- Department of Evolutionary Biology, Ecology and Environmental Sciences & Biodiversity Research Institute, University of Barcelona, Barcelona, Spain.,Croatian Biospeleological Society, Zagreb, Croatia
| | - Carlos E Prieto
- Department of Zoology & Animal Cell Biology, University of the Basque Country, Bilbao, Spain
| | - Carles Ribera
- Department of Evolutionary Biology, Ecology and Environmental Sciences & Biodiversity Research Institute, University of Barcelona, Barcelona, Spain
| | - Robert Rozwałka
- Faculty of Biology and Environmental Sciences, Cardinal Stefan Wyszyński University, Warszawa, Poland
| | - Vlastimil Růžička
- Biology Centre CAS, Institute of Entomology, České Budějovice, Czech Republic
| | - Robert S Vargovitsh
- Schmalhausen Institute of Zoology, National Academy of Sciences of Ukraine, Kiev, Ukraine
| | - Stefan Zaenker
- Verband der deutschen Höhlen- und Karstforscher e.V., Fulda, Germany
| | - Marco Isaia
- Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy
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18
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Čandek K, Agnarsson I, Binford GJ, Kuntner M. Biogeography of the Caribbean Cyrtognatha spiders. Sci Rep 2019; 9:397. [PMID: 30674906 PMCID: PMC6344596 DOI: 10.1038/s41598-018-36590-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Accepted: 11/01/2018] [Indexed: 12/18/2022] Open
Abstract
Island systems provide excellent arenas to test evolutionary hypotheses pertaining to gene flow and diversification of dispersal-limited organisms. Here we focus on an orbweaver spider genus Cyrtognatha (Tetragnathidae) from the Caribbean, with the aims to reconstruct its evolutionary history, examine its biogeographic history in the archipelago, and to estimate the timing and route of Caribbean colonization. Specifically, we test if Cyrtognatha biogeographic history is consistent with an ancient vicariant scenario (the GAARlandia landbridge hypothesis) or overwater dispersal. We reconstructed a species level phylogeny based on one mitochondrial (COI) and one nuclear (28S) marker. We then used this topology to constrain a time-calibrated mtDNA phylogeny, for subsequent biogeographical analyses in BioGeoBEARS of over 100 originally sampled Cyrtognatha individuals, using models with and without a founder event parameter. Our results suggest a radiation of Caribbean Cyrtognatha, containing 11 to 14 species that are exclusively single island endemics. Although biogeographic reconstructions cannot refute a vicariant origin of the Caribbean clade, possibly an artifact of sparse outgroup availability, they indicate timing of colonization that is much too recent for GAARlandia to have played a role. Instead, an overwater colonization to the Caribbean in mid-Miocene better explains the data. From Hispaniola, Cyrtognatha subsequently dispersed to, and diversified on, the other islands of the Greater, and Lesser Antilles. Within the constraints of our island system and data, a model that omits the founder event parameter from biogeographic analysis is less suitable than the equivalent model with a founder event.
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Affiliation(s)
- Klemen Čandek
- Evolutionary Zoology Laboratory, Department of Organisms and Ecosystems Research, National Institute of Biology, Ljubljana, Slovenia.
- Evolutionary Zoology Laboratory, Institute of Biology, Research Centre of the Slovenian Academy of the Sciences and Arts, Ljubljana, Slovenia.
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
| | - Ingi Agnarsson
- Department of Biology, University of Vermont, Burlington, VT, USA
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington D.C., USA
| | - Greta J Binford
- Department of Biology, Lewis and Clark College, Portland, OR, USA
| | - Matjaž Kuntner
- Evolutionary Zoology Laboratory, Department of Organisms and Ecosystems Research, National Institute of Biology, Ljubljana, Slovenia
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington D.C., USA
- College of Life Sciences, Hubei University, Wuhan, Hubei, China
- Evolutionary Zoology Laboratory, Institute of Biology, Research Centre of the Slovenian Academy of the Sciences and Arts, Ljubljana, Slovenia
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19
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Tong Y, Binford G, Rheims CA, Kuntner M, Liu J, Agnarsson I. Huntsmen of the Caribbean: Multiple tests of the GAARlandia hypothesis. Mol Phylogenet Evol 2019; 130:259-268. [DOI: 10.1016/j.ympev.2018.09.017] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Revised: 09/28/2018] [Accepted: 09/28/2018] [Indexed: 12/17/2022]
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20
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Núñez R, Barro-Cañamero A, Minno MC, Fernández DM, Hausmann A. The herophile species group of Calisto (Lepidoptera : Nymphalidae : Satyrinae), new taxa and historical biogeography. INVERTEBR SYST 2019. [DOI: 10.1071/is18048] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The genus Calisto is endemic tothe West Indiesand the only representative there of the Satyrinae. Here wereconstruct the evolutionary relationshipsof the herophile group and describe five new species from Cuba: Calisto gundlachi sp. nov., Calisto siguanensis sp. nov., Calisto disjunctus sp. nov., Calisto sharkeyae sp. nov. and Calisto lastrai sp. nov.We employ one mitochondrial and four nuclear markers to assess the phylogenetic position, Maximum Likelihood and Bayesian Inference approaches, of the new taxa. Our phylogenetic trees yielded two strongly supported main clades with four of the new species included within them and C. sharkeyae as sister group to the rest of the major main clade. We conduct time-divergence estimations and ancestral area reconstructions using BEAST and BioGeoBEARS. The group originated 12.15 million years ago during the middle Miocene in north-eastern Cuba, Nipe-Sagua-Baracoa Massif. After 6 million years of in situ evolution most lineages started to colonise other Cuban territories and the Bahamas. This scenario is consistent with key geological events, including the closure of the western Havana–Matanzas channel 8–6 million years ago, the uplift of the Sierra Maestra 6–5 million years ago, and the land connections among Cuban regions during the Miocene–Pleistocene sea level drops. Dispersal and vicariance processes may have occurred, with populations surviving floodings on the major and minor mountain ranges, which remained as ‘islands’.
http://zoobank.org/urn:lsid:zoobank.org:act:03690F79-F938-42A0-B234-4A228D5C1913
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Chapin KJ, Winkler DE, Wiencek P, Agnarsson I. Island biogeography and ecological modeling of the amblypygid Phrynus marginemaculatus in the Florida Keys archipelago. Ecol Evol 2018; 8:9139-9151. [PMID: 30377489 PMCID: PMC6194218 DOI: 10.1002/ece3.4333] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2018] [Revised: 06/14/2018] [Accepted: 06/17/2018] [Indexed: 11/20/2022] Open
Abstract
AIM The biogeography of terrestrial organisms across the Florida Keys archipelago is poorly understood. We used population genetics and spatioecological modeling of the Amblypygi Phrynus marginemaculatus to understand the genetic structure and metapopulation dynamics of Keys populations that are otherwise isolated by human development and ocean. LOCATION The Florida Keys archipelago and mainland Florida. METHODS We sequenced a 1,238 bp fragment of mtDNA for 103 individuals of P. marginemaculatus from 13 sites in the Florida Keys and South Florida, binned into four regions. We used population genetic analyses to understand the population structure of the species throughout its US range. Furthermore, we used ecological modeling with climate, habitat, and human development data to develop habitat suitability estimates for the species. RESULTS We found clear genetic structure between localities. The Lower Keys, in particular, support populations separate from those in other regions studied. Ecological modeling and genetic analyses showed the highest habitat suitability and genetic isolation in the Lower Keys, but urban development across the species range has resulted in the loss of most historical habitat. MAIN CONCLUSIONS A mainland-metapopulation model best fits P. marginemaculatus gene flow patterns in the Florida Keys and mainland. Ocean currents likely play a role in metapopulation dynamics and gene flow for terrestrial Keys species like P. marginemaculatus, and genetic patterns also matched patterns consistent with geologic history. Suitable habitat, however, is limited and under threat of human destruction. The few remaining pockets of the most suitable habitat tend to occur in parks and protected areas. We argue that conservation efforts for this species and others in the terrestrial Florida Keys would benefit from a deeper understanding of the population genetic structure and ecology of the archipelago.
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Affiliation(s)
- Kenneth J. Chapin
- Department of Ecology & Evolutionary BiologyUniversity of California, Los AngelesLos AngelesCalifornia
| | - Daniel E. Winkler
- Department of Ecology & Evolutionary BiologyUniversity of California, IrvineIrvineCalifornia
| | | | - Ingi Agnarsson
- Department of BiologyUniversity of VermontBurlingtonVermont
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22
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Review of Trichodamon Mello-Leitão 1935 and phylogenetic placement of the genus in Phrynichidae (Arachnida, Amblypygi). ZOOL ANZ 2018. [DOI: 10.1016/j.jcz.2018.02.006] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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24
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Mammola S, Arnedo MA, Pantini P, Piano E, Chiappetta N, Isaia M. Ecological speciation in darkness? Spatial niche partitioning in sibling subterranean spiders (Araneae : Linyphiidae : Troglohyphantes). INVERTEBR SYST 2018. [DOI: 10.1071/is17090] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Speciation in subterranean habitats is commonly explained as the result of divergent selection in geographically isolated populations; conversely, the contribution of niche partitioning in driving subterranean species diversification has been rarely quantified. The present study integrated molecular and morphological data with a hypervolume analysis based on functional traits to investigate a potential case of parapatric speciation by means of niche differentiation in two sibling spiders inhabiting contiguous subterranean habitats within a small alpine hypogean site. Troglohyphantes giachinoi, sp. nov. and T. bornensis are diagnosed by small details of the genitalia, which are likely to be involved in a reproductive barrier. Molecular analysis recovered the two species as sister, and revealed a deep genetic divergence that may trace back to the Messinian (~6 million years ago). The hypervolume analysis highlighted a marginal overlap in their ecological niches, coupled with morphological character displacement. Specifically, T. giachinoi, sp. nov. exhibits morphological traits suitable for thriving in the smaller pores of the superficial network of underground fissures (Milieu Souterrain Superficiel, MSS), whereas T. bornensis shows a greater adaptation to the deep subterranean habitat. Our results suggest that different selective regimes within the subterranean environment, i.e. deep caves v. MSS, may either drive local speciation or facilitate contiguous distributions of independently subterranean adapted species.
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Deler-Hernández A, Sýkora V, Seidel M, Cala-Riquelme F, Fikáček M. Multiple origins of the Phaenonotum beetles in the Greater Antilles (Coleoptera: Hydrophilidae): phylogeny, biogeography and systematics. Zool J Linn Soc 2017. [DOI: 10.1093/zoolinnean/zlx071] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Albert Deler-Hernández
- Department of Zoology, Faculty of Science, Charles University in Prague, Viničná, Praha, Czech Republic
| | - Vít Sýkora
- Department of Zoology, Faculty of Science, Charles University in Prague, Viničná, Praha, Czech Republic
| | - Matthias Seidel
- Department of Zoology, Faculty of Science, Charles University in Prague, Viničná, Praha, Czech Republic
- Department of Entomology, National Museum, Cirkusová, Praha – Horní Počernice, CZ, Czech Republic
| | - Franklyn Cala-Riquelme
- Programa de postgrado, Departamento de Biología, Universidad Nacional de Colombia, Carrera, Bogota D. C., Colombia
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Carrera, Bogota D. C. Colombia
| | - Martin Fikáček
- Department of Zoology, Faculty of Science, Charles University in Prague, Viničná, Praha, Czech Republic
- Department of Entomology, National Museum, Cirkusová, Praha – Horní Počernice, CZ, Czech Republic
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Agnarsson I, van Patten C, Sargeant L, Chomitz B, Dziki A, Binford GJ. A radiation of the ornate Caribbean ‘smiley-faced spiders’, with descriptions of 15 new species (Araneae: Theridiidae, Spintharus). Zool J Linn Soc 2017. [DOI: 10.1093/zoolinnean/zlx056] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Ingi Agnarsson
- Department of Biology, University of Vermont, Burlington, VT, USA
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, 10th & Constitution NWWashington, DC, USA
| | - Chloe van Patten
- Department of Biology, University of Vermont, Burlington, VT, USA
| | - Lily Sargeant
- Department of Biology, University of Vermont, Burlington, VT, USA
| | - Ben Chomitz
- Department of Biology, University of Vermont, Burlington, VT, USA
| | - Austin Dziki
- Department of Biology, University of Vermont, Burlington, VT, USA
| | - Greta J Binford
- Department of Biology, Lewis and Clark College, Portland, OR, USA
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Wolff JO, Seiter M, Gorb SN. The water-repellent cerotegument of whip-spiders (Arachnida: Amblypygi). ARTHROPOD STRUCTURE & DEVELOPMENT 2017; 46:116-129. [PMID: 27751783 DOI: 10.1016/j.asd.2016.10.010] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2016] [Revised: 08/26/2016] [Accepted: 10/11/2016] [Indexed: 06/06/2023]
Abstract
The cuticle of arthropods is usually composed of layers of a chitin-protein-microcomposite, a proteinaceous epicuticle and a thin lipid coating. However, in some instances a thick cement layer (cerotegument) covers the cuticle and may produce elaborate microstructures. This has previously been described for millipedes and mites. Here we report the previously unknown presence of a superhydrophobic cerotegument in whip-spiders (Ambypygi) and reveal its variation in ultrastructure and water-repellence between species. We discuss the relevance of found micro-morphological and physical characters for taxonomy and phylogenetics of this group, and the potential biological functions.
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Affiliation(s)
- Jonas O Wolff
- Functional Morphology and Biomechanics, Zoological Institute, University of Kiel, Am Botanischen Garten 9, 24118, Kiel, Germany; Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia.
| | - Michael Seiter
- Department of Integrative Zoology, University of Vienna, Faculty of Life Science, Althanstrasse 14, 1090, Vienna, Austria; Institute of Zoology, Department of Integrative Biology and Biodiversity Research, University of Natural Resources and Life Sciences, Gregor Mendel Strasse 33, 1180, Vienna, Austria
| | - Stanislav N Gorb
- Functional Morphology and Biomechanics, Zoological Institute, University of Kiel, Am Botanischen Garten 9, 24118, Kiel, Germany
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Agnarsson I, LeQuier SM, Kuntner M, Cheng RC, Coddington JA, Binford G. Phylogeography of a good Caribbean disperser: Argiope argentata (Araneae, Araneidae) and a new 'cryptic' species from Cuba. Zookeys 2016:25-44. [PMID: 27833425 PMCID: PMC5096361 DOI: 10.3897/zookeys.625.8729] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2016] [Accepted: 10/07/2016] [Indexed: 11/28/2022] Open
Abstract
The Caribbean islands harbor rich biodiversity with high levels of single island endemism. Stretches of ocean between islands represent significant barriers to gene-flow. Yet some native species are widespread, indicating dispersal across oceans, even in wingless organisms like spiders. Argiopeargentata (Fabricius, 1775) is a large, charismatic, and widespread species of orb-weaving spider ranging from the United States to Argentina and is well known to balloon. Here we explore the phylogeography of Argiopeargentata in the Caribbean as a part of the multi-lineage CarBio project, through mtDNA haplotype and multi-locus phylogenetic analyses. The history of the Argiopeargentata lineage in the Caribbean goes back 3-5 million years and is characterized by multiple dispersal events and isolation-by-distance. We find a highly genetically distinct lineage on Cuba which we describe as Argiopebutchkosp. n. While the argentata lineage seems to readily balloon shorter distances, stretches of ocean still act as filters for among-island gene-flow as evidenced by distinct haplotypes on the more isolated islands, high FST values, and strong correlation between intraspecific (but not interspecific) genetic and geographic distances. The new species described here is clearly genetically diagnosable, but morphologically cryptic, at least with reference to the genitalia that typically diagnose spider species. Our results are consistent with the intermediate dispersal model suggesting that good dispersers, such as our study species, limit the effect of oceanic barriers and thus diversification and endemism.
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Affiliation(s)
- Ingi Agnarsson
- Department of Biology, University of Vermont, Burlington, VT, USA; Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
| | | | - Matjaž Kuntner
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA; Evolutionary Zoology Laboratory, Biological Institute ZRC SAZU, Ljubljana, Slovenia
| | - Ren-Chung Cheng
- Evolutionary Zoology Laboratory, Biological Institute ZRC SAZU, Ljubljana, Slovenia
| | - Jonathan A Coddington
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
| | - Greta Binford
- Department of Biology, Lewis and Clark College, Portland, OR, USA
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Starrett J, Derkarabetian S, Richart CH, Cabrero A, Hedin M. A new monster from southwest Oregon forests: Cryptomaster behemoth sp. n. (Opiliones, Laniatores, Travunioidea). Zookeys 2016:11-35. [PMID: 26877685 PMCID: PMC4740820 DOI: 10.3897/zookeys.555.6274] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Accepted: 11/15/2015] [Indexed: 12/03/2022] Open
Abstract
The monotypic genus Cryptomaster Briggs, 1969 was described based on individuals from a single locality in southwestern Oregon. The described species Cryptomasterleviathan Briggs, 1969 was named for its large body size compared to most travunioid Laniatores. However, as the generic name suggests, Cryptomaster are notoriously difficult to find, and few subsequent collections have been recorded for this genus. Here, we increase sampling of Cryptomaster to 15 localities, extending their known range from the Coast Range northeast to the western Cascade Mountains of southern Oregon. Phylogenetic analyses of mitochondrial and nuclear DNA sequence data reveal deep phylogenetic breaks consistent with independently evolving lineages. We use discovery and validation species delimitation approaches to generate and test species hypotheses, including a coalescent species delimitation method to test multi-species hypotheses. For delimited species, we use light microscopy and SEM to discover diagnostic morphological characters. Although Cryptomaster has a small geographic distribution, this taxon is consistent with other short-range endemics in having deep phylogenetic breaks indicative of species level divergences. Herein we describe Cryptomasterbehemothsp. n., and provide morphological diagnostic characters for identifying Cryptomasterleviathan and Cryptomasterbehemoth.
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Affiliation(s)
- James Starrett
- Department of Biology, 5500 Campanile Drive San Diego State University, San Diego, CA 92182, USA
| | - Shahan Derkarabetian
- Department of Biology, 5500 Campanile Drive San Diego State University, San Diego, CA 92182, USA; Department of Biology, 900 University Avenue, University of California, Riverside, Riverside, CA 92521, USA
| | - Casey H Richart
- Department of Biology, 5500 Campanile Drive San Diego State University, San Diego, CA 92182, USA; Department of Biology, 900 University Avenue, University of California, Riverside, Riverside, CA 92521, USA
| | - Allan Cabrero
- Department of Biology, 5500 Campanile Drive San Diego State University, San Diego, CA 92182, USA
| | - Marshal Hedin
- Department of Biology, 5500 Campanile Drive San Diego State University, San Diego, CA 92182, USA
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Dziki A, Binford GJ, Coddington JA, Agnarsson I. Spintharus flavidus in the Caribbean-a 30 million year biogeographical history and radiation of a 'widespread species'. PeerJ 2015; 3:e1422. [PMID: 26618089 PMCID: PMC4655100 DOI: 10.7717/peerj.1422] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2015] [Accepted: 11/02/2015] [Indexed: 01/30/2023] Open
Abstract
The Caribbean island biota is characterized by high levels of endemism, the result of an interplay between colonization opportunities on islands and effective oceanic barriers among them. A relatively small percentage of the biota is represented by ‘widespread species,’ presumably taxa for which oceanic barriers are ineffective. Few studies have explored in detail the genetic structure of widespread Caribbean taxa. The cobweb spider Spintharus flavidus Hentz, 1850 (Theridiidae) is one of two described Spintharus species and is unique in being widely distributed from northern N. America to Brazil and throughout the Caribbean. As a taxonomic hypothesis, Spintharus “flavidus” predicts maintenance of gene flow among Caribbean islands, a prediction that seems contradicted by known S. flavidus biology, which suggests limited dispersal ability. As part of an extensive survey of Caribbean arachnids (project CarBio), we conducted the first molecular phylogenetic analysis of S. flavidus with the primary goal of testing the ‘widespread species’ hypothesis. Our results, while limited to three molecular loci, reject the hypothesis of a single widespread species. Instead this lineage seems to represent a radiation with at least 16 species in the Caribbean region. Nearly all are short range endemics with several distinct mainland groups and others are single island endemics. While limited taxon sampling, with a single specimen from S. America, constrains what we can infer about the biogeographical history of the lineage, clear patterns still emerge. Consistent with limited overwater dispersal, we find evidence for a single colonization of the Caribbean about 30 million years ago, coinciding with the timing of the GAARLandia landbridge hypothesis. In sum, S. “flavidus” is not a single species capable of frequent overwater dispersal, but rather a 30 my old radiation of single island endemics that provides preliminary support for a complex and contested geological hypothesis.
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Affiliation(s)
- Austin Dziki
- Department of Biology, University of Vermont , Burlington, VT , USA
| | - Greta J Binford
- Department of Biology, Lewis and Clark College , Portland, OR , USA
| | - Jonathan A Coddington
- Department of Entomology, National Museum of Natural History, Smithsonian Institution , Washington, DC , USA
| | - Ingi Agnarsson
- Department of Biology, University of Vermont , Burlington, VT , USA ; Department of Entomology, National Museum of Natural History, Smithsonian Institution , Washington, DC , USA
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