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Vanalli C, Mari L, Casagrandi R, Boag B, Gatto M, Cattadori IM. Modeling the contribution of antibody attack rates to single and dual helminth infections in a natural system. Math Biosci 2023; 360:109010. [PMID: 37088125 DOI: 10.1016/j.mbs.2023.109010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Revised: 04/12/2023] [Accepted: 04/14/2023] [Indexed: 04/25/2023]
Abstract
Within-host models of infection can provide important insights into the processes that affect parasite spread and persistence in host populations. However, modeling can be limited by the availability of empirical data, a problem commonly encountered in natural systems. Here, we used six years of immune-infection observations of two gastrointestinal helminths (Trichostrongylus retortaeformis and Graphidium strigosum) from a population of European rabbits (Oryctolagus cuniculus) to develop an age-dependent, mathematical model that explicitly included species-specific and cross-reacting antibody (IgA and IgG) responses to each helminth in hosts with single or dual infections. Different models of single infection were formally compared to test alternative mechanisms of parasite regulation. The two models that best described single infections of each helminth species were then coupled through antibody cross-immunity to examine how the presence of one species could alter the host immune response to, and the within-host dynamics of, the other species. For both single infections, model selection suggested that either IgA or IgG responses could equally explain the observed parasite intensities by host age. However, the antibody attack rate and affinity level changed between the two helminths, it was stronger against T. retortaeformis than against G. strigosum and caused contrasting age-intensity profiles. When the two helminths coinfect the same host, we found variation of the species-specific antibody response to both species together with an asymmetric cross-immune response driven by IgG. Lower attack rate and affinity of antibodies in dual than single infections contributed to the significant increase of both helminth intensities. By combining mathematical modeling with immuno-infection data, our work provides a tractable model framework for disentangling some of the complexities generated by host-parasite and parasite-parasite interactions in natural systems.
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Affiliation(s)
- Chiara Vanalli
- Center for Infectious Disease Dynamics and Department of Biology, The Pennsylvania State University, University Park, 16802 PA, USA.
| | - Lorenzo Mari
- Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, 20133 Milano, Italy
| | - Renato Casagrandi
- Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, 20133 Milano, Italy
| | - Brian Boag
- The James Hutton Institute, DD2 5DA Invergowrie, UK
| | - Marino Gatto
- Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, 20133 Milano, Italy
| | - Isabella M Cattadori
- Center for Infectious Disease Dynamics and Department of Biology, The Pennsylvania State University, University Park, 16802 PA, USA
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Horn S, Snoep JL, van Niekerk DD. Uncovering the effects of heterogeneity and parameter sensitivity on within-host dynamics of disease: malaria as a case study. BMC Bioinformatics 2021; 22:384. [PMID: 34303353 PMCID: PMC8305899 DOI: 10.1186/s12859-021-04289-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Accepted: 06/11/2021] [Indexed: 12/04/2022] Open
Abstract
Background The fidelity and reliability of disease model predictions depend on accurate and precise descriptions of processes and determination of parameters. Various models exist to describe within-host dynamics during malaria infection but there is a shortage of clinical data that can be used to quantitatively validate them and establish confidence in their predictions. In addition, model parameters often contain a degree of uncertainty and show variations between individuals, potentially undermining the reliability of model predictions. In this study models were reproduced and analysed by means of robustness, uncertainty, local sensitivity and local sensitivity robustness analysis to establish confidence in their predictions. Results Components of the immune system are responsible for the most uncertainty in model outputs, while disease associated variables showed the greatest sensitivity for these components. All models showed a comparable degree of robustness but displayed different ranges in their predictions. In these different ranges, sensitivities were well-preserved in three of the four models. Conclusion Analyses of the effects of parameter variations in models can provide a comparative tool for the evaluation of model predictions. In addition, it can assist in uncovering model weak points and, in the case of disease models, be used to identify possible points for therapeutic intervention. Supplementary Information The online version contains supplementary material available at 10.1186/s12859-021-04289-z.
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Affiliation(s)
- Shade Horn
- Department of Biochemistry, Stellenbosch University, Private Bag X1, Matieland, 7602, Stellenbosch, South Africa
| | - Jacky L Snoep
- Department of Biochemistry, Stellenbosch University, Private Bag X1, Matieland, 7602, Stellenbosch, South Africa.,Molecular Cell Physiology, Vrije Universiteit, De Boelelaan 1087, 1081 HV, Amsterdam, The Netherlands
| | - David D van Niekerk
- Department of Biochemistry, Stellenbosch University, Private Bag X1, Matieland, 7602, Stellenbosch, South Africa.
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NGWA GIDEONA, WOLDEGERIMA WOLDEGEBRIELA, TEBOH-EWUNGKEM MIRANDAI. A MATHEMATICAL STUDY OF THE IMPLICIT ROLE OF INNATE AND ADAPTIVE IMMUNE RESPONSES ON WITHIN-HUMAN PLASMODIUM FALCIPARUM PARASITE LEVELS. J BIOL SYST 2020. [DOI: 10.1142/s0218339020400069] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
A within-human-host malaria parasite model, integrating key variables that influence parasite evolution-progression-advancement, under innate and adaptive immune responses, is analyzed. The implicit role of immunity on the steady state parasite loads and parasitemia reproduction number ([Formula: see text]), a threshold parameter measuring the parasite’s annexing ability of healthy red blood cells (HRBCs), eventually rendering a human infectious to mosquitoes, is investigated. The impact of the type of recruitment function used to model HRBC growth is also investigated. The model steady states and [Formula: see text], both obtained as functions of immune system variables, are analyzed at snapshots of immune sizes. Model results indicate that the more the immune cells, innate and adaptive, the more efficient they are at inhibiting parasite development and progression; consequently, the less severe the malaria disease in a patient. Our analysis also illustrates the existence of a Hopf bifurcation leading to a limit cycle, observable only for the nonlinear recruitment functions, at reasonably large [Formula: see text].
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Affiliation(s)
- GIDEON A. NGWA
- Department of Mathematics, University of Buea, P. O. Box 63, Buea, Cameroon
| | - WOLDEGEBRIEL A. WOLDEGERIMA
- Department of Mathematics, University of Buea, P. O. Box 63, Buea, Cameroon
- African Institute for the Mathematical Sciences (AIMS) Cameroon, P. O. Box 608, Limbe, Cameroon
- CNCS, Department of Mathematics, Mekelle University, P. O. Box 231, Tigray, Ethiopia
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Elaiw AM, Al Agha AD. Global analysis of a reaction–diffusion blood-stage malaria model with immune response. INT J BIOMATH 2020. [DOI: 10.1142/s1793524520500291] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Malaria is one of the most dangerous diseases that threatens people’s lives around the world. In this paper, we study a reaction-diffusion model for the within-host dynamics of malaria infection with an antibody immune response. The model is given by a system of partial differential equations (PDEs) to describe the blood-stage of malaria life cycle. It addresses the interactions between uninfected red blood cells, antibodies, and three types of infected red blood cells, namely ring-infected red blood cells, trophozoite-infected red blood cells and schizont-infected red blood cells. Moreover, the model contains a parameter to measure the efficacy of isoleucine starvation and its effect on the growth of malaria parasites. We show the basic properties of the model. We compute all equilibria and derive the thresholds from the conditions of existence of malaria equilibrium points. We prove the global stability of all equilibrium points based on choosing suitable Lyapunov functionals. We use the characteristic equations to verify the local instability of equilibrium points. We finally execute numerical simulations to validate the theoretical results and highlight some important observations. The results indicate that isoleucine starvation can have a critical impact on the stability of equilibrium points. When the efficacy of isoleucine starvation is high, it switches the system from the infection state to the malaria-free state. The presence of an antibody immune response does not lead to the elimination of malaria infection, but it suppresses the growth of malaria parasites and increases the amount of healthy red blood cells.
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Affiliation(s)
- A. M. Elaiw
- Department of Mathematics, Faculty of Science, King Abdulaziz University, P. O. Box 80203, Jeddah 21589, Saudi Arabia
| | - A. D. Al Agha
- Department of Mathematics, Faculty of Science, King Abdulaziz University, P. O. Box 80203, Jeddah 21589, Saudi Arabia
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Global Analysis of a Reaction-Diffusion Within-Host Malaria Infection Model with Adaptive Immune Response. MATHEMATICS 2020. [DOI: 10.3390/math8040563] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Malaria is one of the most dangerous global diseases. This paper studies a reaction-diffusion model for the within-host dynamics of malaria infection with both antibody and cell-mediated immune responses. The model explores the interactions between uninfected red blood cells (erythrocytes), three types of infected red blood cells, free merozoites, CTLs and antibodies. It contains some parameters to measure the effect of antimalarial drugs and isoleucine starvation on the blood cycle of malaria infection. The basic properties of the model are discussed. All possible equilibrium points and the threshold conditions required for their existence are addressed. The global stability of all equilibria are proved by selecting suitable Lyapunov functionals and using LaSalle’s invariance principle. The characteristic equations are used to study the local instability conditions of the equilibria. Some numerical simulations are conducted to support the theoretical results. The results indicate that antimalarial drugs with high efficacy can clear the infection and take the system towards the disease-free state. Increasing the efficacy of isoleucine starvation has a similar effect as antimalarial drugs and can eliminate the disease. The presence of immune responses with low efficacy of treatments does not provide a complete protection against the disease. However, the immune responses reduce the concentrations of all types of infected cells and limit the production of malaria parasites.
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The Impact of Recruitment on the Dynamics of an Immune-Suppressed Within-Human–Host Model of the Plasmodium falciparum Parasite. Bull Math Biol 2018; 81:4564-4619. [DOI: 10.1007/s11538-018-0436-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Accepted: 04/19/2018] [Indexed: 10/16/2022]
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From within host dynamics to the epidemiology of infectious disease: Scientific overview and challenges. Math Biosci 2015; 270:143-55. [PMID: 26474512 DOI: 10.1016/j.mbs.2015.10.002] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Since their earliest days, humans have been struggling with infectious diseases. Caused by viruses, bacteria, protozoa, or even higher organisms like worms, these diseases depend critically on numerous intricate interactions between parasites and hosts, and while we have learned much about these interactions, many details are still obscure. It is evident that the combined host-parasite dynamics constitutes a complex system that involves components and processes at multiple scales of time, space, and biological organization. At one end of this hierarchy we know of individual molecules that play crucial roles for the survival of a parasite or for the response and survival of its host. At the other end, one realizes that the spread of infectious diseases by far exceeds specific locales and, due to today's easy travel of hosts carrying a multitude of organisms, can quickly reach global proportions. The community of mathematical modelers has been addressing specific aspects of infectious diseases for a long time. Most of these efforts have focused on one or two select scales of a multi-level disease and used quite different computational approaches. This restriction to a molecular, physiological, or epidemiological level was prudent, as it has produced solid pillars of a foundation from which it might eventually be possible to launch comprehensive, multi-scale modeling efforts that make full use of the recent advances in biology and, in particular, the various high-throughput methodologies accompanying the emerging -omics revolution. This special issue contains contributions from biologists and modelers, most of whom presented and discussed their work at the workshop From within Host Dynamics to the Epidemiology of Infectious Disease, which was held at the Mathematical Biosciences Institute at Ohio State University in April 2014. These contributions highlight some of the forays into a deeper understanding of the dynamics between parasites and their hosts, and the consequences of this dynamics for the spread and treatment of infectious diseases.
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Gutierrez JB, Galinski MR, Cantrell S, Voit EO. WITHDRAWN: From within host dynamics to the epidemiology of infectious disease: Scientific overview and challenges. Math Biosci 2015:S0025-5564(15)00085-1. [PMID: 25890102 DOI: 10.1016/j.mbs.2015.04.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
This article has been withdrawn at the request of the author(s) and/or editor. The Publisher apologizes for any inconvenience this may cause. The full Elsevier Policy on Article Withdrawal can be found at http://www.elsevier.com/locate/withdrawalpolicy.
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Affiliation(s)
- Juan B Gutierrez
- Department of Mathematics, Institute of Bioinformatics, University of Georgia, Athens, GA 30602, United States .
| | - Mary R Galinski
- Emory University School of Medicine, Division of Infectious Diseases, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, 954 Gatewood Road, Atlanta, GA 30329, United States .
| | - Stephen Cantrell
- Department of Mathematics, University of Miami, Coral Gables, FL 33124, United States .
| | - Eberhard O Voit
- Department of Biomedical Engineering, Georgia Institute of Technology, 313 Ferst Drive, Suite 4103, Atlanta, GA 30332-0535, United States .
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Xu JF, Lv S, Wang QY, Qian MB, Liu Q, Bergquist R, Zhou XN. Schistosomiasis japonica: modelling as a tool to explore transmission patterns. Acta Trop 2015; 141:213-22. [PMID: 25004441 DOI: 10.1016/j.actatropica.2014.06.014] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2013] [Revised: 06/22/2014] [Accepted: 06/27/2014] [Indexed: 11/26/2022]
Abstract
Modelling is an important tool for the exploration of Schistosoma japonicum transmission patterns. It provides a general theoretical framework for decision-makers and lends itself specifically to assessing the progress of the national control programme by following the outcome of surveys. The challenge of keeping up with the many changes of social, ecological and environmental factors involved in control activities is greatly facilitated by modelling that can also indicate which activities are critical and which are less important. This review examines the application of modelling tools in the epidemiological study of schistosomiasis japonica during the last 20 years and explores the application of enhanced models for surveillance and response. Updated and timely information for decision-makers in the national elimination programme is provided but, in spite of the new modelling techniques introduced, many questions remain. Issues on application of modelling are discussed with the view to improve the current situation with respect to schistosomiasis japonica.
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Absence of genetic structure in Baylisascaris schroederi populations, a giant panda parasite, determined by mitochondrial sequencing. Parasit Vectors 2014; 7:606. [PMID: 25532965 PMCID: PMC4292857 DOI: 10.1186/s13071-014-0606-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2014] [Accepted: 12/16/2014] [Indexed: 11/25/2022] Open
Abstract
Background Infection with the parasitic nematode, Baylisascaris schroederi (Ascaridida: Nematoda), is one of the most important causes of death in giant pandas, and was responsible for half of deaths between 2001 and 2005. Mitochondrial (mt) DNA sequences of parasites can unveil their genetic diversity and depict their likely dynamic evolution and therefore may provide insights into parasite survival and responses to host changes, as well as parasite control. Methods Based on previous studies, the present study further annotated the genetic variability and structure of B. schroederi populations by combining two different mtDNA markers, ATPase subunit 6 (atp6) and cytochrome c oxidase subunit I (cox1). Both sequences were completely amplified and genetically analyzed among 57 B. schroederi isolates, which were individually collected from ten geographical regions located in three important giant panda habitats in China (Minshan, Qionglai and Qinling mountain ranges). Results For the DNA dataset, we identified 20 haplotypes of atp6, 24 haplotypes of cox1, and 39 haplotypes of atp6 + cox1. Further haplotype network and phylogenetic analyses demonstrated that B. schroederi populations were predominantly driven by three common haplotypes, atp6 A1, cox1 C10, and atp6 + cox1 H11. However, due to low rates of gene differentiation between the three populations, both the atp6 and cox1 genes appeared not to be significantly associated with geographical divisions. In addition, high gene flow was detected among the B. schroederi populations, consistent with previous studies, suggesting that this parasite may be essentially homogenous across endemic areas. Finally, neutrality tests and mismatch analysis indicated that B. schroederi had undergone earlier demographic expansion. Conclusions These results confirmed that B. schroederi populations do not follow a pattern of isolation by distance, further revealing the possible existence of physical connections before geographic separation. This study should also contribute to an improved understanding of the population genetics and evolutionary biology of B. schroederi and assist in the control of baylisascariasis in giant pandas. Electronic supplementary material The online version of this article (doi:10.1186/s13071-014-0606-3) contains supplementary material, which is available to authorized users.
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Wascher CAF, Bauer AC, Holtmann AR, Kotrschal K. Environmental and social factors affecting the excretion of intestinal parasite eggs in graylag geese. Behav Ecol 2012. [DOI: 10.1093/beheco/ars113] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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12
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Abstract
In this paper we introduce a physiologically structured SIR epidemic model where the individuals are distributed according to their immune status. An individual immune status is assumed to increase during the infectious period and remain unchanged after the recovery. Recovered individuals can become reinfected at a rate which is a decreasing function of their immune status. We find that the possibility of reinfection of recovered individuals results in subthreshold endemic equilibria. The differential immunity of the infectious individuals leads to multiple nontrivial equilibria in the superthreshold case. We present an example that has exactly three nontrivial equilibria. We also analyze the local stability of equilibria.
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Affiliation(s)
- MAIA MARTCHEVA
- Department of Mathematics, University of Florida, Gainesville, FL 32611-8105, USA
| | - SERGEI S. PILYUGIN
- Department of Mathematics, University of Florida, Gainesville, FL 32611-8105, USA
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13
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Abstract
Dynamical behavior of a vivax malaria model is provided and regular recurrences of the symptoms of the tertian fever are described in the human body. We calculate the basic reproduction number R0 and explain the connection between the basic reproduction number and the parasite-threshold. If R0 < 1, then plasmodium vivax will be eliminated. If R0 > 1, then malarial parasites are survivable and there is a so called parasite-threshold. When the value of the parasites is larger than this parasite-threshold the symptoms of the tertian fever appear; otherwise, if the value of the parasites is less than this parasite-threshold the tertian fever cannot give signs of the symptoms suddenly in vivo. We illustrate that the gravity of infected baby is worse than that of infected grownup and also explain that the advancing of the vivax malaria can be arrested by eliminating malarial parasites in erythrocyte stage with clinical treatment by numerical simulations.
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Affiliation(s)
- ZHIJUN DONG
- School of Mathematic Science, Nanjing Normal University, Nanjing 210046, P. R. China
| | - JING-AN CUI
- School of Science, Beijing University of Civil Engineering & Architecture, Beijing 100044, P. R. China
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Li Y, Ruan S, Xiao D. The within-host dynamics of malaria infection with immune response. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2011; 8:999-1018. [PMID: 21936597 DOI: 10.3934/mbe.2011.8.999] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Malaria infection is one of the most serious global health problems of our time. In this article the blood-stage dynamics of malaria in an infected host are studied by incorporating red blood cells, malaria parasitemia and immune effectors into a mathematical model with nonlinear bounded Michaelis-Menten-Monod functions describing how immune cells interact with infected red blood cells and merozoites. By a theoretical analysis of this model, we show that there exists a threshold value R0, namely the basic reproduction number, for the malaria infection. The malaria-free equilibrium is global asymptotically stable if R0 < 1. If R0 > 1, there exist two kinds of infection equilibria: malaria infection equilibrium (without specific immune response) and positive equilibrium (with specific immune response). Conditions on the existence and stability of both infection equilibria are given. Moreover, it has been showed that the model can undergo Hopf bifurcation at the positive equilibrium and exhibit periodic oscillations. Numerical simulations are also provided to demonstrate these theoretical results.
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Affiliation(s)
- Yilong Li
- Department of Mathematics, East China University of Science and Technology, Shanghai, China.
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15
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Mladineo I, Petrić M, Segvić T, Dobričić N. Scarcity of parasite assemblages in the Adriatic-reared European sea bass (Dicentrarchus labrax) and sea bream (Sparus aurata). Vet Parasitol 2010; 174:131-8. [PMID: 20837380 DOI: 10.1016/j.vetpar.2010.08.015] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2010] [Revised: 08/02/2010] [Accepted: 08/16/2010] [Indexed: 10/19/2022]
Abstract
The shaping forces of parasite community structure still is the main subject in the ecological parasitology whilst community predictability and repeatability showed that hardly a generally applicable role is ever going to be assessed. Defining and describing parasite communities can be very useful from the epizootiological point, in order to help in the assessment of the medical and economical impact of certain parasitosis, moreover when hosts are economically valuable species. Since parasite assemblages in reared European sea bass (Dicentrarchus labrax) and sea bream (Sparus aurata) in Adriatic cage systems can play an important role in the economic feasibility of the rearing process, we evaluated their character through assessing diversity indices, nestedness of parasite communities and their differences in respect to season and composition, as well as fish growth. We observed colonization of a new monogenean species (Furnestinia echeneis) and general impoverishment of parasites populations over time in the Adriatic-reared fish parasite assemblages. Parasite assemblages differed significantly between seasons for both fish species, while species richness, evenness, diversity indices and nestedness of parasitic communities in the sea bream showed to be significantly higher compared to those in the sea bass. Such characteristics define parasite communities of both Adriatic-reared fish as species poor although structured and ordered assemblages.
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Affiliation(s)
- Ivona Mladineo
- Institute of Oceanography and Fisheries, Šetalište I. Meštrovića 63, POB 500, 21000 Split, Croatia.
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Lu DB, Rudge JW, Wang TP, Donnelly CA, Fang GR, Webster JP. Transmission of Schistosoma japonicum in marshland and hilly regions of China: parasite population genetic and sibship structure. PLoS Negl Trop Dis 2010; 4:e781. [PMID: 20689829 PMCID: PMC2914789 DOI: 10.1371/journal.pntd.0000781] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2009] [Accepted: 07/01/2010] [Indexed: 11/25/2022] Open
Abstract
The transmission dynamics of Schistosoma japonicum remain poorly understood, as over forty species of mammals are suspected of serving as reservoir hosts. However, knowledge of the population genetic structure and of the full-sibship structuring of parasites at two larval stages will be useful in defining and tracking the transmission pattern between intermediate and definitive hosts. S. japonicum larvae were therefore collected in three marshland and three hilly villages in Anhui Province of China across three time points: April and September-October 2006, and April 2007, and then genotyped with six microsatellite markers. Results from the population genetic and sibling relationship analyses of the parasites across two larval stages demonstrated that, within the marshland, parasites from cattle showed higher genetic diversity than from other species; whereas within the hilly region, parasites from dogs and humans displayed higher genetic diversity than those from rodents. Both the extent of gene flow and the estimated proportion of full-sib relationships of parasites between two larval stages indicated that the cercariae identified within intermediate hosts in the marshlands mostly came from cattle, whereas in the hilly areas, they were varied between villages, coming primarily from rodents, dogs or humans. Such results suggest a different transmission process within the hilly region from within the marshlands. Moreover, this is the first time that the sibling relationship analysis was applied to the transmission dynamics for S. japonicum. Schistosoma japonicum involves two obligatory host stages, with asexual reproduction within a molluscan host and sexual reproduction within a mammalian host. Having over 40 species of mammals suspected of being potential reservoirs complicates the transmission patterns. Understanding the complex transmission patterns is further hampered by the ethical and logistical difficulty in sampling adult worms from mammalian hosts. However, the two free-swimming larval stages, cercariae (released from a mollusc and then infective to a mammal) and miracidia (hatched from eggs passed in a mammal's faeces, and then infective to a mollusc), are available, and elucidating the genetic composition of parasites at theses two stages could provide information of infection processes. Here we sampled cercariae during April 2006, miracidia during September-October 2006, and cercariae during April 2007 in three marshland and three hilly villages in Anhui Province of China, and, using microsatellite markers, analyzed the population genetic structure and, for the first time, the familial relationships of parasites at different stages. We found contrasting population structures of parasites, and host species-associated diversities and transmission patterns of parasites between and within two regions. Moreover, we demonstrate that the successful application of sibship analyses to infection process provides an alternative approach to the dissection of transmission dynamics.
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Affiliation(s)
- Da-Bing Lu
- Department of Infectious Disease Epidemiology, Faculty of Medicine, Imperial College, London, UK.
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Oscillations in an Intra-host Model of Plasmodium Falciparum Malaria Due to Cross-reactive Immune Response. Bull Math Biol 2009; 72:590-610. [DOI: 10.1007/s11538-009-9462-2] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2009] [Accepted: 09/22/2009] [Indexed: 10/20/2022]
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Eswarappa SM. Location of pathogenic bacteria during persistent infections: insights from an analysis using game theory. PLoS One 2009; 4:e5383. [PMID: 19401783 PMCID: PMC2671611 DOI: 10.1371/journal.pone.0005383] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2009] [Accepted: 04/03/2009] [Indexed: 12/27/2022] Open
Abstract
Bacterial persistent infections are responsible for a significant amount of the human morbidity and mortality. Unlike acute bacterial infections, it is very difficult to treat persistent bacterial infections (e.g. tuberculosis). Knowledge about the location of pathogenic bacteria during persistent infection will help to treat such conditions by designing novel drugs which can reach such locations. In this study, events of bacterial persistent infections were analyzed using game theory. A game was defined where the pathogen and the host are the two players with a conflict of interest. Criteria for the establishment of Nash equilibrium were calculated for this game. This theoretical model, which is very simple and heuristic, predicts that during persistent infections pathogenic bacteria stay in both intracellular and extracellular compartments of the host. The result of this study implies that a bacterium should be able to survive in both intracellular and extracellular compartments of the host in order to cause persistent infections. This explains why persistent infections are more often caused by intracellular pathogens like Mycobacterium and Salmonella. Moreover, this prediction is in consistence with the results of previous experimental studies.
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Affiliation(s)
- Sandeepa M Eswarappa
- Centre for Infectious Disease Research and Biosafety Laboratories, Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
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19
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Alizon S, van Baalen M. Acute or chronic? Within-host models with immune dynamics, infection outcome, and parasite evolution. Am Nat 2009; 172:E244-56. [PMID: 18999939 DOI: 10.1086/592404] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
There is ample theoretical and experimental evidence that virulence evolution depends on the immune response of the host. In this article, we review a number of recent studies that attempt to explicitly incorporate the dynamics of the immune system (instead of merely representing it by a single black box parameter) in models for the evolution of parasite virulence. A striking observation is that the type of infection (acute or chronic) is invariably considered to be a constraint that model assumptions have to satisfy rather than as a potential outcome of the interaction of the parasite with its host's immune system. We argue that avoiding making assumptions about the type of infection will lead to a better understanding of infectious diseases, even though a number of fundamental and technical problems remain. Dynamical modeling of the immune system opens a wide range of perspectives: for understanding how the immune system eradicates a parasite (which it does for most pathogens but not for all, HIV being a notorious example of a virus that is not completely eliminated), for studying multiple infections through concomitant immunity, for understanding the emergence and evolution of the immune system in animals, and for evolutionary epidemiology in general (e.g., predicting evolutionary consequences of new therapies and public health policies). We conclude by discussing new approaches based on embedded (or nested) models and identify future perspectives for the modeling of infectious diseases.
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Affiliation(s)
- Samuel Alizon
- Ecole Normale Supérieure, Unité Mixte de Recherche 7625 Fonctionnement et Evolution des Systèmes Ecologiques, Paris F-75005, France.
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20
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Barrett LG, Thrall PH, Burdon JJ, Linde CC. Life history determines genetic structure and evolutionary potential of host-parasite interactions. Trends Ecol Evol 2008; 23:678-85. [PMID: 18947899 DOI: 10.1016/j.tree.2008.06.017] [Citation(s) in RCA: 223] [Impact Index Per Article: 13.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2008] [Revised: 06/25/2008] [Accepted: 06/26/2008] [Indexed: 02/04/2023]
Abstract
Measures of population genetic structure and diversity of disease-causing organisms are commonly used to draw inferences regarding their evolutionary history and potential to generate new variation in traits that determine interactions with their hosts. Parasite species exhibit a range of population structures and life-history strategies, including different transmission modes, life-cycle complexity, off-host survival mechanisms and dispersal ability. These are important determinants of the frequency and predictability of interactions with host species. Yet the complex causal relationships between spatial structure, life history and the evolutionary dynamics of parasite populations are not well understood. We demonstrate that a clear picture of the evolutionary potential of parasitic organisms and their demographic and evolutionary histories can only come from understanding the role of life history and spatial structure in influencing population dynamics and epidemiological patterns.
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Affiliation(s)
- Luke G Barrett
- CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601, Australia.
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21
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Abstract
Most mathematical models of malaria infection represent parasites as replicating continuously at a constant rate whereas in reality, malaria parasites replicate at a fixed age. The behaviour of continuous-time models when gametocytogenesis is included, in comparison to a more realistic discrete-time model that incorporates a fixed replication age was evaluated. Both the infection dynamics under gametocytogenesis and implications for predicting the amount parasites should invest into gametocytes (level of investment favoured by natural selection) are considered. It is shown that the many malaria models with constant replication rates can be represented by just 3 basic types. For these 3 types, it is then shown that under gametocytogenesis (i) in 2 cases, parasite multiplication and gametocyte production is mostly much too low, (ii) in the third, parasite multiplication and gametocyte production is mostly much too high, (iii) the effect of gametocyte investment on parasite multiplication is mostly too high, (iv) the effect of gametocyte investment on gametocyte production is nearly always too low and (v) with a simple approximation of fitness, the predicted level of gametocyte investment is mostly much too low. However, a continuous model with 48 age-compartments compares well to the discrete model. These findings are a further argument for modelling malaria infections in discrete time.
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22
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Iggidr A, Mbang J, Sallet G. Stability analysis of within-host parasite models with delays. Math Biosci 2007; 209:51-75. [PMID: 17383688 DOI: 10.1016/j.mbs.2007.01.008] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2006] [Revised: 12/12/2006] [Accepted: 01/16/2007] [Indexed: 11/26/2022]
Abstract
We provide a global analysis of systems of within-host parasitic infections. The systems studied have parallel classes of different length of latently infected target cells. These systems can also be thought as systems arising from within-host parasitic systems with distributed continuous delays. We compute the basic reproduction ratio R0 for the systems under consideration. If R0< or =1 the parasite is cleared, if R0>1 and if a sufficient condition is satisfied we conclude to the global asymptotic stability (GAS) of the endemic equilibrium. For some generic class of models this condition reduces to R0>1. These results make possible to revisit some parasitic models including intracellular delays and to study their global stability.
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Affiliation(s)
- Abderrahman Iggidr
- INRIA-Lorraine and University Paul Verlaine-Metz LMAM-CNRS UMR 7122, ISGMP Bat. A, Ile du Saulcy 57045 Metz Cedex 01, France.
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23
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Klinkenberg D, Heesterbeek JAP. A model for the dynamics of a protozoan parasite within and between successive host populations. Parasitology 2007; 134:949-58. [PMID: 17324298 DOI: 10.1017/s0031182007002429] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
SUMMARYParasite-host systems often include an obligatory environmental stage in the parasite life-cycle, which can be transmitted between successive populations. Complexity even increases if immunity only gradually develops upon re-infection. For a better understanding of such systems we study Eimeria spp. in chickens, a protozoan parasite transmitted through oocysts on the floor. This paper deals with dynamics within and between successive cohorts of chickens by coupling a within-host description of the parasite life-cycle (with immunity) to re-uptake of oocysts from the environment. First the initial environmental oocyst level is related to the maximum infection load within a cohort, as a measure of production damage, from which we conclude that minimum damage levels can be observed with intermediate oocyst levels. Then we relate the initial to the final oocyst level of a cohort, and study the dynamics between cohorts in relation to an oocyst cleaning efficiency after each cohort. The resulting unstable dynamics lead to the conclusion that it will often be impossible to minimize damage by repeatedly cleaning with the same effort: it may be necessary to artificially increase oocyst levels in the shed before each chicken cohort.
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Affiliation(s)
- D Klinkenberg
- Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, Yalelaan 7, 3584 CL Utrecht, The Netherlands.
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24
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Hamilton R, Boots M, Paterson S. The effect of host heterogeneity and parasite intragenomic interactions on parasite population structure. Proc Biol Sci 2006; 272:1647-53. [PMID: 16087418 PMCID: PMC1559857 DOI: 10.1098/rspb.2005.3134] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Understanding the processes that shape the genetic structure of parasite populations and the functional consequences of different parasite genotypes is critical for our ability to predict how an infection can spread through a host population and for the design of effective vaccines to combat infection and disease. Here, we examine how the genetic structure of parasite populations responds to host genetic heterogeneity. We consider the well-characterized molecular specificity of major histocompatibility complex binding of antigenic peptides to derive deterministic and stochastic models. We use these models to ask, firstly, what conditions favour the evolution of generalist parasite genotypes versus specialist parasite genotypes? Secondly, can parasite genotypes coexist in a population? We find that intragenomic interactions between parasite loci encoding antigenic peptides are pivotal in determining the outcome of evolution. Where parasite loci interact synergistically (i.e. the recognition of additional antigenic peptides has a disproportionately large effect on parasite fitness), generalist parasite genotypes are favoured. Where parasite loci act multiplicatively (have independent effects on fitness) or antagonistically (have diminishing effects on parasite fitness), specialist parasite genotypes are favoured. A key finding is that polymorphism is not stable and that, with respect to functionally important antigenic peptides, parasite populations are dominated by a single genotype.
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Affiliation(s)
- Ruth Hamilton
- School of Biological Sciences, University of Liverpool, Liverpool L69 7ZB, UK.
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25
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Klinkenberg D, Heesterbeek JAP. A simple model for the within-host dynamics of a protozoan parasite. Proc Biol Sci 2005; 272:593-600. [PMID: 15817433 PMCID: PMC1564076 DOI: 10.1098/rspb.2004.2987] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The dynamics of parasite-host systems can be complicated if the parasite life cycle contains an obligatory environmental stage and if the hosts' immunity increases upon re-infection. The dynamics then greatly depend on the relation between infection history and parasite uptake and excretion of individual hosts. In an effort to better understand such systems, we study Eimeria spp. in chickens as our model. In this paper we take a first step and study the within-host dynamics of Eimeria spp. transmitted through oocysts in the environment, with a mathematical model for the parasite life cycle in discrete time, interacting with a single variable describing the immune response. The model can explain various types of oocyst input-output behaviour as described in previous experiments, in particular the characteristic crowding effect, which causes a decreasing oocyst production with increasing single dose oocyst uptake. Oocyst excretion during constant oocyst uptake (trickle infection) and the immunizing effect of single and trickle infections also appears in accordance with published experiments. The model seems a good description of oocyst input-output behaviour in individual hosts; it provides a solid basis for the study of between-host dynamics, where individuals interact in a common environment, thereby affecting their own and each other's infection pattern.
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Affiliation(s)
- D Klinkenberg
- Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, Yalelaan 7, 3584 CL Utrecht, The Netherlands.
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26
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Nguewa PA, Fuertes MA, Valladares B, Alonso C, Pérez JM. Programmed cell death in trypanosomatids: a way to maximize their biological fitness? Trends Parasitol 2004; 20:375-80. [PMID: 15246321 DOI: 10.1016/j.pt.2004.05.006] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
Programmed cell death (PCD) is a biochemical process that plays an essential role in the development of multicellular organisms. However, accumulating evidence indicates that PCD is also present in single-celled eukaryotes. Thus, trypanosomatids might be endowed with a PCD mechanism that is derived from ancestral death machinery. PCD in trypanosomatids could be a process without a defined function, inherited through eukaryotic cell evolution, which might be triggered in response to diverse stimuli and stress conditions. However, recent observations suggest that PCD might be used by trypanosomatids to maximize their biological fitness. Therefore, PCD could represent a potential pharmacological target for protozoan control.
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Affiliation(s)
- Paul A Nguewa
- Departamento de Parasitología, Facultad de Farmacia, Universidad de la Laguna, 38071 La Laguna, Tenerife, Spain
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27
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Vizoso DB, Ebert D. Within-host dynamics of a microsporidium with horizontal and vertical transmission: Octosporea bayeri in Daphnia magna. Parasitology 2004; 128:31-8. [PMID: 15002901 DOI: 10.1017/s0031182003004293] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
The fresh-water crustacean Daphnia magna may acquire an infection with the microsporidium Octosporea bayeri either by ingesting spores from the water (horizontally), or directly from its mother (vertically). Due to differences in the time and mechanisms of transmission, horizontal and vertical infections may lead to differences in the growth of the parasite within the host. This may influence parasite virulence, transmission to new hosts, and, consequently, epidemiology and evolution. Here we describe the within-host dynamics of 3 spore-types of O. bayeri from infections that were acquired either horizontally or vertically. In all treatments the number of spores increased exponentially until spore density reached a plateau, suggesting density-dependent within-host growth. The spore types seen differ in their growth dynamics, suggesting different roles in the parasite life-cycle. Horizontally-infected hosts harboured significantly fewer spores than vertically-infected hosts. Further, host survival was affected by infection route, with mortality being higher in horizontal infections than in vertical infections. Our results suggest that different routes of infection have an immediate effect on within-host parasite growth and thus on parasite fitness and epidemiology.
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Affiliation(s)
- D B Vizoso
- Département de Biologie, Unité d'Ecologie et Evolution, Université de Fribourg, Chemin du Musée 10, CH-1700 Fribourg, Switzerland.
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28
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Lee N, Bertholet S, Debrabant A, Muller J, Duncan R, Nakhasi HL. Programmed cell death in the unicellular protozoan parasite Leishmania. Cell Death Differ 2002; 9:53-64. [PMID: 11803374 DOI: 10.1038/sj.cdd.4400952] [Citation(s) in RCA: 211] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2001] [Revised: 07/23/2001] [Accepted: 08/31/2001] [Indexed: 11/08/2022] Open
Abstract
In the present study we have demonstrated some features characterizing programmed cell death (PCD) in the unicellular protozoan parasite Leishmania donovani, the causative agent of visceral Leishmaniasis. We report that PCD is initiated in stationary phase cultures of promastigotes and both in actively growing cultures of axenic amastigotes and promastigotes upon treatment with anti Leishmanial drugs (Pentostam and amphotericin B). However, the two cell types respond to antileishmanial drugs differently. The features of PCD in L. donovani promastigotes are nuclear condensation, nicked DNA in the nucleus, DNA ladder formation, increase in plasma membrane permeability, decrease in the mitochondrial membrane potential (DeltaPsi m) and induction of a PhiPhiLux (PPL)-cleavage activity. PCD in both stationary phase culture and upon induction by amphotericin B resulted first in the decrease of mitochondrial membrane potential followed by simultaneous change in plasma membrane permeability and induction of PPL-cleavage activity. Of the total PPL-cleavage activity, several caspase inhibitors inhibited a significant amount (21-34%). Inhibitors of cathepsin or calpain did not inhibit PPL-cleavage activity. Taken together this study demonstrates that the characteristic features of PCD exist in unicellular protozoan Leishmania donovani. The implication of PCD on the Leishmania pathogenesis is discussed.
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Affiliation(s)
- N Lee
- Division of Emerging and Transfusion Transmitted Diseases, OBRR, CBER, FDA, Bethesda, MD 20892, USA
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