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Kobayashi D, Kakinouchi K, Nagae T, Nagai T, Shimura K, Hazama A. Cesium reversibly suppresses HeLa cell proliferation by inhibiting cellular metabolism. FEBS Lett 2017; 591:718-727. [DOI: 10.1002/1873-3468.12579] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2016] [Revised: 01/23/2017] [Accepted: 01/24/2017] [Indexed: 11/11/2022]
Affiliation(s)
- Daisuke Kobayashi
- Department of Cellular and Integrative Physiology School of Medicine Fukushima Medical University Japan
| | - Kei Kakinouchi
- Department of Cellular and Integrative Physiology School of Medicine Fukushima Medical University Japan
| | - Tomoki Nagae
- Department of Cellular and Integrative Physiology School of Medicine Fukushima Medical University Japan
| | - Toshihiko Nagai
- Department of Natural Sciences School of Medicine Fukushima Medical University Japan
| | - Kiyohito Shimura
- Department of Natural Sciences School of Medicine Fukushima Medical University Japan
| | - Akihiro Hazama
- Department of Cellular and Integrative Physiology School of Medicine Fukushima Medical University Japan
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Use of CE to Analyze Solutes in Pico- and Nano-Liter Samples from Plant Cells and Rhizosphere. Methods Mol Biol 2016. [PMID: 27645738 DOI: 10.1007/978-1-4939-6403-1_11] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
Abstract
This chapter describes the use of capillary electrophoresis (CE) in the accurate quantitative mapping of small molecules and ions in intact function tissues between individual cells at single cell resolution. It can also be used for the analysis of the heterogeneity of soil surrounding roots at similar spatial resolution, providing a link between plant and environment. No pretreatment or genetic manipulation of the plant is required. The application is an extension of the Single Cell Sampling and Analysis technique (SiCSA), in which glass micromanipulation of microcapillaries allows samples in the pl and nl volume range to be obtained and manipulated under paraffin oil (to prevent evaporation) before being introduced to the CE column. An advantage of this approach is that the entire sample can be brought to the detector (without the loading losses associated with other techniques). The power of SiCSA-CE is that the results can be directly related to a range of other single-cell resolution parameters ranging from mechanical and hydraulic properties to gene expression. Several protocols and (contrasting) applications are provided.
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Volkov V. Salinity tolerance in plants. Quantitative approach to ion transport starting from halophytes and stepping to genetic and protein engineering for manipulating ion fluxes. FRONTIERS IN PLANT SCIENCE 2015; 6:873. [PMID: 26579140 PMCID: PMC4621421 DOI: 10.3389/fpls.2015.00873] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2015] [Accepted: 10/01/2015] [Indexed: 05/18/2023]
Abstract
Ion transport is the fundamental factor determining salinity tolerance in plants. The Review starts from differences in ion transport between salt tolerant halophytes and salt-sensitive plants with an emphasis on transport of potassium and sodium via plasma membranes. The comparison provides introductory information for increasing salinity tolerance. Effects of salt stress on ion transport properties of membranes show huge opportunities for manipulating ion fluxes. Further steps require knowledge about mechanisms of ion transport and individual genes of ion transport proteins. Initially, the Review describes methods to measure ion fluxes, the independent set of techniques ensures robust and reliable basement for quantitative approach. The Review briefly summarizes current data concerning Na(+) and K(+) concentrations in cells, refers to primary thermodynamics of ion transport and gives special attention to individual ion channels and transporters. Simplified scheme of a plant cell with known transport systems at the plasma membrane and tonoplast helps to imagine the complexity of ion transport and allows choosing specific transporters for modulating ion transport. The complexity is enhanced by the influence of cell size and cell wall on ion transport. Special attention is given to ion transporters and to potassium and sodium transport by HKT, HAK, NHX, and SOS1 proteins. Comparison between non-selective cation channels and ion transporters reveals potential importance of ion transporters and the balance between the two pathways of ion transport. Further on the Review describes in detail several successful attempts to overexpress or knockout ion transporters for changing salinity tolerance. Future perspectives are questioned with more attention given to promising candidate ion channels and transporters for altered expression. Potential direction of increasing salinity tolerance by modifying ion channels and transporters using single point mutations is discussed and questioned. An alternative approach from synthetic biology is to create new regulation networks using novel transport proteins with desired properties for transforming agricultural crops. The approach had not been widely used earlier; it leads also to theoretical and pure scientific aspects of protein chemistry, structure-function relations of membrane proteins, systems biology and physiology of stress and ion homeostasis. Summarizing, several potential ways are aimed at required increase in salinity tolerance of plants of interest.
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Affiliation(s)
- Vadim Volkov
- Faculty of Life Sciences and Computing, London Metropolitan UniversityLondon, UK
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Rokhas MK, Mikkonen S, Beyer J, Jacksén J, Emmer Å. CE analysis of single wood cells performing hydrolysis and preconcentration in open microchannels. Electrophoresis 2013; 35:450-7. [DOI: 10.1002/elps.201300408] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2013] [Revised: 10/17/2013] [Accepted: 10/21/2013] [Indexed: 11/06/2022]
Affiliation(s)
- Maria Khihon Rokhas
- Analytical Chemistry; Division of Applied Physical Chemistry; Department of Chemistry; School of Chemical Science and Engineering; KTH Royal Institute of Technology; Stockholm Sweden
| | - Saara Mikkonen
- Analytical Chemistry; Division of Applied Physical Chemistry; Department of Chemistry; School of Chemical Science and Engineering; KTH Royal Institute of Technology; Stockholm Sweden
| | - Juliane Beyer
- B CUBE - Center for Molecular Bioengineering; Technische Universität Dresden; Dresden Germany
| | - Johan Jacksén
- Analytical Chemistry; Division of Applied Physical Chemistry; Department of Chemistry; School of Chemical Science and Engineering; KTH Royal Institute of Technology; Stockholm Sweden
| | - Åsa Emmer
- Analytical Chemistry; Division of Applied Physical Chemistry; Department of Chemistry; School of Chemical Science and Engineering; KTH Royal Institute of Technology; Stockholm Sweden
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Dziomba S, Belka M, Kowalski P, Plenis A, Bączek T. The advances of electromigration techniques applied for alkaloid analysis. Biomed Chromatogr 2013; 27:1312-38. [DOI: 10.1002/bmc.2967] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2013] [Revised: 05/16/2013] [Accepted: 05/16/2013] [Indexed: 11/09/2022]
Affiliation(s)
- Szymon Dziomba
- Department of Pharmaceutical Chemistry; Medical University of Gdańsk; Hallera 107; 80-416; Gdańsk; Poland
| | - Mariusz Belka
- Department of Pharmaceutical Chemistry; Medical University of Gdańsk; Hallera 107; 80-416; Gdańsk; Poland
| | - Piotr Kowalski
- Department of Pharmaceutical Chemistry; Medical University of Gdańsk; Hallera 107; 80-416; Gdańsk; Poland
| | - Alina Plenis
- Department of Pharmaceutical Chemistry; Medical University of Gdańsk; Hallera 107; 80-416; Gdańsk; Poland
| | - Tomasz Bączek
- Department of Pharmaceutical Chemistry; Medical University of Gdańsk; Hallera 107; 80-416; Gdańsk; Poland
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Abstract
Single-cell sampling and analysis allows the determination of solute concentrations in individual cells and tissues. This is particularly important when studying a stress such as salinity, where the cell- and tissue-specific distribution of sodium and chloride may decide a plant's fate. In this chapter, some selected SiCSA methods are described in detail, and their advantages and possible pitfalls discussed. These methods include pressure-driven extraction of cell contents (cell sap sampling) and the analysis of extracted cell sap through picolitre osmometry (osmolality), energy-dispersive X-ray analysis (concentrations of Na, K, P, S, Cl, Ca), and microfluorometry (concentrations of, for example, nitrate and total amino acids).
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Abstract
Plant single cell sampling and analysis allows the determination of solute concentrations in individual cells and tissues. This is particularly important when studying mineral nutrition, where the cell- and tissue-specific distribution of individual mineral nutrients increases a plant's options to store and mobilize these nutrients in response to a changing external availability. In this chapter, some selected single cell sampling and analysis methods are described in detail, and their advantages and possible pitfalls discussed. These methods include pressure-driven extraction of cell contents (cell sap sampling), and the analysis of extracted cell sap through picoliter osmometry (osmolality), energy-dispersive X-ray (EDX) analysis (concentrations of Na, K, P, S, Cl, Ca), and microfluorometry (concentrations of anions and amino acids). In most cases, the extracted cell sap is mainly vacuolar in origin.
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Affiliation(s)
- Wieland Fricke
- School of Biology and Environmental Science, University College Dublin (UCD), Dublin, Ireland,
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Knecht K, Schroth MH, Schulin R, Nowack B. Development and evaluation of micro push-pull tests to investigate micro-scale processes in porous media. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2011; 45:6460-6467. [PMID: 21710991 DOI: 10.1021/es2009727] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Soils and sediments are porous media characterized by heterogeneities across a wide range of spatial scales. Physical, chemical, and biological properties have been found to show great variation even at subcentimeter scales. Here we present a new micro technique for the in situ study of chemical and microbiological reactions in water-saturated porous media at the mm-scale. This technique combines micro suction cups with the principle of single-well injection-withdrawal tests ("push-pull" tests). Push-pull tests have been used extensively on larger scales in groundwater research to obtain quantitative information of physical, chemical, and microbiological characteristics of an aquifer. The micro push-pull technique presented here was developed and validated using a thin-slab chamber filled with sand. A porous micro cup was used to inject about 250 μL of a test solution into the water-saturated sand pack and then to slowly extract about 850 μL water from the same point. The extraction-phase breakthrough curves of the solutes were modeled considering advection, dispersion, and molecular diffusion without fitting any parameters. As an example we quantified the degradation of citrate injected into the water-saturated sand pack inoculated with denitrifying bacteria. The results show that the new technique can be used to assess local microbial degradation processes under in situ conditions on the micro scale.
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Affiliation(s)
- Kajsa Knecht
- Institute of Terrestrial Ecosystems, ETH Zurich, Zurich, Switzerland
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Garzón T, Gunsé B, Moreno AR, Tomos AD, Barceló J, Poschenrieder C. Aluminium-induced alteration of ion homeostasis in root tip vacuoles of two maize varieties differing in Al tolerance. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2011; 180:709-715. [PMID: 21421422 DOI: 10.1016/j.plantsci.2011.01.022] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2010] [Revised: 01/17/2011] [Accepted: 01/28/2011] [Indexed: 05/30/2023]
Abstract
Root elongation is a primary target of Al toxicity in plants. The objective of this study was to see whether Al-induced disturbance of ion homeostasis is related to the inhibition of root elongation. For this purpose, root growth rate, free cytoplasmic calcium (Ca²+) and vacuolar content of phosphate (P(i)), potassium (K+), nitrate (NO₃⁻) and malate, as well as malate and citrate exudation and nitrate reductase activity were analysed in tips of two Zea mays L. varieties differing in Al resistance. Aluminium treatment affected root growth and cytoplasmic Ca²+ in the Al sensitive variety Bakero, but not in the Al tolerant variety Sikuani. However, both varieties suffered Al-induced decrease of vacuolar K+, and phosphate concentrations. Vacuolar malate concentrations were more affected by Al in Bakero than in Sikuani. Vacuolar nitrate concentrations increased upon Al exposure in both varieties. Only in Sikuani rhizosphere, pH slightly increased upon Al exposure. Our data are consistent with the hypothesis that disturbance of Ca²+ homeostasis is an early event in the Al toxicity syndrome. However, Al-induced alterations of the root tip homeostasis of major ions seem unrelated to Al-induced inhibition of root elongation.
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Affiliation(s)
- Teresa Garzón
- Lab Fisiologia Vegetal, Facultat de Biociències, Universitat Autònoma de Barcelona, E-08193 Bellaterra, Spain
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Ebert B, Zöller D, Erban A, Fehrle I, Hartmann J, Niehl A, Kopka J, Fisahn J. Metabolic profiling of Arabidopsis thaliana epidermal cells. JOURNAL OF EXPERIMENTAL BOTANY 2010; 61:1321-35. [PMID: 20150518 PMCID: PMC2837255 DOI: 10.1093/jxb/erq002] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2009] [Revised: 10/31/2009] [Accepted: 12/24/2009] [Indexed: 05/17/2023]
Abstract
Metabolic phenotyping at cellular resolution may be considered one of the challenges in current plant physiology. A method is described which enables the cell type-specific metabolic analysis of epidermal cell types in Arabidopsis thaliana pavement, basal, and trichome cells. To achieve the required high spatial resolution, single cell sampling using microcapillaries was combined with routine gas chromatography-time of flight-mass spectrometry (GC-TOF-MS) based metabolite profiling. The identification and relative quantification of 117 mostly primary metabolites has been demonstrated. The majority, namely 90 compounds, were accessible without analytical background correction. Analyses were performed using cell type-specific pools of 200 microsampled individual cells. Moreover, among these identified metabolites, 38 exhibited differential pool sizes in trichomes, basal or pavement cells. The application of an independent component analysis confirmed the cell type-specific metabolic phenotypes. Significant pool size changes between individual cells were detectable within several classes of metabolites, namely amino acids, fatty acids and alcohols, alkanes, lipids, N-compounds, organic acids and polyhydroxy acids, polyols, sugars, sugar conjugates and phenylpropanoids. It is demonstrated here that the combination of microsampling and GC-MS based metabolite profiling provides a method to investigate the cellular metabolism of fully differentiated plant cell types in vivo.
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Affiliation(s)
- Berit Ebert
- Max-Planck-Institute of Molecular Plant Physiology, Campus Golm, Am Mühlenberg 1, D-14476 Potsdam OT Golm, Germany
| | - Daniela Zöller
- Max-Planck-Institute of Molecular Plant Physiology, Campus Golm, Am Mühlenberg 1, D-14476 Potsdam OT Golm, Germany
| | - Alexander Erban
- Max-Planck-Institute of Molecular Plant Physiology, Campus Golm, Am Mühlenberg 1, D-14476 Potsdam OT Golm, Germany
| | - Ines Fehrle
- Max-Planck-Institute of Molecular Plant Physiology, Campus Golm, Am Mühlenberg 1, D-14476 Potsdam OT Golm, Germany
| | - Jürgen Hartmann
- Max-Planck-Institute of Colloids and Interfaces, Campus Golm, Am Mühlenberg 1, D-14476 Potsdam OT Golm, Germany
| | - Annette Niehl
- CNRS UPR 2357 Institut de Biologie Moléculaire des Plantes, 12 rue du Général Zimmer, F-67084, Strasbourg Cedex, France
| | - Joachim Kopka
- Max-Planck-Institute of Molecular Plant Physiology, Campus Golm, Am Mühlenberg 1, D-14476 Potsdam OT Golm, Germany
| | - Joachim Fisahn
- Max-Planck-Institute of Molecular Plant Physiology, Campus Golm, Am Mühlenberg 1, D-14476 Potsdam OT Golm, Germany
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Hernández R, Riu J, Rius FX. Determination of calcium ion in sap using carbon nanotube-based ion-selective electrodes. Analyst 2010; 135:1979-85. [DOI: 10.1039/c0an00148a] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Separation and determination of inorganic cations in beverages by capillary electrophoresis with indirect UV detection. OPEN CHEM 2008. [DOI: 10.2478/s11532-008-0051-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
AbstractA rapid, simple and reliable capillary electrophoresis method for the separation and quantitation of inorganic cations with indirect UV detection at 214 nm was developed. The electrolyte was: 12 mM imidazole as background absorbance provider; 5 mM malic acid and 1.0 mM 18-crown-6 ether as complexing agents; and 20% D2O (v/v) to improve ion mobility. The pH was 4.25. The applied voltage was 22 kV at 22°C. Nine ions were completely separated and determined with correlation coefficients of 0.9979-0.9992. The relative standard deviations (RSD) were less than 0.5% for migration time and less than 5.2% for peak area (n=8). The detection limits (S/N=3) were from 0.08 mg L−1 (for Na+) to 0.51 mg L−1 (for Cu2+). To assess the reliability atomic absorption (AA) was also used to determine the same samples. Satisfactory results were obtained for real samples of jasmine tea drink and coconut milk.
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Wieland K, Thiele B, Schurr U. Analysis of alkaloids in single plant cells by capillary electrophoresis. Methods Mol Biol 2008; 384:771-82. [PMID: 18392594 DOI: 10.1007/978-1-59745-376-9_32] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
In this chapter, capillary electrophoresis (CE) is demonstrated to be a useful technique for the determination of alkaloids in microsamples of single plant cells. A single cell sampling technique with microcapillaries that includes extraction of sample volumes in the pl range from single cells, division into aliquots, addition of internal standard, and injection into the CE capillary is described. The danger of contamination and evaporation of such low sample volumes has been avoided by handling them under an inert protective layer of silicone oil. For the determination of alkaloids in cell samples, CE with direct ultraviolet detection using a high concentration of citric acid as background electrolyte provides sufficient sensitivity.
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Affiliation(s)
- Katrin Wieland
- HGF/FZJ-Research Centre Jülich, Phytosphere, Jülich, Germany
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Boudko DY. Bioanalytical profile of the L-arginine/nitric oxide pathway and its evaluation by capillary electrophoresis. J Chromatogr B Analyt Technol Biomed Life Sci 2007; 851:186-210. [PMID: 17329176 PMCID: PMC2040328 DOI: 10.1016/j.jchromb.2007.02.011] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2006] [Revised: 01/30/2007] [Accepted: 02/06/2007] [Indexed: 02/07/2023]
Abstract
This review briefly summarizes recent progress in fundamental understanding and analytical profiling of the L-arginine/nitric oxide (NO) pathway. It focuses on key analytical references of NO actions and the experimental acquisition of these references in vivo, with capillary electrophoresis (CE) and high-performance capillary electrophoresis (HPCE) comprising one of the most flexible and technologically promising analytical platform for comprehensive high-resolution profiling of NO-related metabolites. Another aim of this review is to express demands and bridge efforts of experimental biologists, medical professionals and chemical analysis-oriented scientists who strive to understand evolution and physiological roles of NO and to develop analytical methods for use in biology and medicine.
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Affiliation(s)
- Dmitri Y Boudko
- The Whitney Laboratory for Marine Bioscience, 9505 Ocean Shore Blvd., St. Augustine, FL 32080, USA.
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Affiliation(s)
- L. M. Shaner
- a Pfizer Central Research , Groton, CT, 06249, U.S.A
| | - P. R. Brown
- b Department of Chemistry , University of Rhode Island , Kingston, RI, 02881, U.S.A
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ZHANG J, NAGAHAMA T, ABO M, OKUBO A, YAMAZAKI S. Capillary electrophoretic analysis of dimethylsulfoniopropionate in sugarcane and marine algal extracts. Talanta 2005; 66:244-8. [DOI: 10.1016/j.talanta.2004.11.019] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2004] [Revised: 11/19/2004] [Accepted: 11/19/2004] [Indexed: 10/26/2022]
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Warren CR, Adams MA. Capillary electrophoresis of the major anions and cations in leaf extracts of woody species. PHYTOCHEMICAL ANALYSIS : PCA 2004; 15:407-413. [PMID: 15595456 DOI: 10.1002/pca.801] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Capillary electrophoresis methods are described for the analysis of the major inorganic anions (nitrite, nitrate, chloride, sulphate, phosphate), organic acids (oxalate, malate, citrate, succinate) and inorganic cations (ammonium, potassium, sodium, calcium, magnesium) in leaf extracts. Analytical performance was validated for extracts from leaves of four sclerophyllous species: Eucalyptus globulus, E. cladocalyx, E. nitens and Pinus radiata. Inorganic anions and organic acids were analysed in a single run within 5 min using a background electrolyte of 2,6-pyridinedicarboxylic acid (20 mM) and cetyltrimethylammonium bromide (0.5 mM). Cations were analysed in a separate run also within 5 min using imidazole (10 mM) and 18-crown-6 (2 mM) as background electrolyte. Replicate injections were highly repeatable when the capillary was rinsed between runs with hydrochloric acid (0.25 M) and background electrolyte, but not when the acid rinse was omitted or replaced by a rinse with sodium hydroxide (0.25 M). Standard curves for all analytes were linear over the range of 0.05-1 mm. Standard curves constructed by serial dilution of a leaf extract were also highly linear, and this, combined with the excellent recovery of added solutes in a spike and recovery test, suggests quantification was unaffected by the complex matrix that is present in un-purified, hot water extracts of leaves. There were significant differences in concentrations of the major anions and cations between the species studied.
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Affiliation(s)
- Charles R Warren
- School of Forest and Ecosystem Science, Water Street, Creswick VIC 3363, Australia.
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Yamagami T, Tsuchisaka A, Yamada K, Haddon WF, Harden LA, Theologis A. Biochemical diversity among the 1-amino-cyclopropane-1-carboxylate synthase isozymes encoded by the Arabidopsis gene family. J Biol Chem 2003; 278:49102-12. [PMID: 12968022 DOI: 10.1074/jbc.m308297200] [Citation(s) in RCA: 200] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
1-Amino-cyclopropane-1-carboxylate synthase (ACS, EC 4.4.1.14) is the key enzyme in the ethylene biosynthetic pathway in plants. The completion of the Arabidopsis genome sequence revealed the presence of twelve putative ACS genes, ACS1-12, dispersed among five chromosomes. ACS1-5 have been previously characterized. However, ACS1 is enzymatically inactive whereas ACS3 is a pseudogene. Complementation analysis with the Escherichia coli aminotransferase mutant DL39 shows that ACS10 and 12 encode aminotransferases. The remaining eight genes are authentic ACS genes and together with ACS1 constitute the Arabidopsis ACS gene family. All genes, except ACS3, are transcriptionally active and differentially expressed during Arabidopsis growth and development. IAA induces all ACS genes, except ACS7 and ACS9; CHX enhances the expression of all functional ACS genes. The ACS genes were expressed in E. coli, purified to homogeneity by affinity chromatography, and biochemically characterized. The quality of the recombinant proteins was verified by N-terminal amino acid sequence and MALDI-TOF mass spectrometry. The analysis shows that all ACS isozymes function as dimers and have an optimum pH, ranging between 7.3 and 8.2. Their Km values for AdoMet range from 8.3 to 45 microm, whereas their kcat values vary from 0.19 to 4.82 s-1 per monomer. Their Ki values for AVG and sinefungin vary from 0.019 to 0.80 microm and 0.15 to 12 microm, respectively. The results indicate that the Arabidopsis ACS isozymes are biochemically distinct. It is proposed that biochemically diverse ACS isozymes function in unique cellular environments for the biosynthesis of C2H4, permitting the signaling molecule to exert its unique effects in a tissue- or cell-specific fashion.
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Affiliation(s)
- Takeshi Yamagami
- Plant Gene Expression Center, United States Department of Agriculture, Albany, California 94710, USA
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Abstract
Despite the availability of commercial capillary electrophoresis systems for over ten years, where quantitative analysis is required, capillary zone electrophoresis (CZE) has often failed to replace ion chromatography as the method of choice for a large number of analytes, not least inorganic anions. To investigate the reasons for this apparent failing, a review is presented of work that has been carried out to-date involving the quantitative application of CZE to the determination of inorganic anions in industrial and environmental samples. This review summarizes work both investigating and improving the quantitative aspects of the CZE of inorganic anions. A complete survey of how CZE has been applied to the determination of inorganic anions in real samples is given, including what, if any, analytical performance parameters were investigated and quoted, and if quality assurance data and validation methods were briefly considered, thoroughly investigated or simply ignored.
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Affiliation(s)
- Brett Paull
- National Centre for Sensor Research, School of Chemical Sciences, Dublin City University, Dublin, Ireland.
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Arlt K, Brandt S, Kehr J. Amino acid analysis in five pooled single plant cell samples using capillary electrophoresis coupled to laser-induced fluorescence detection. J Chromatogr A 2001; 926:319-25. [PMID: 11556336 DOI: 10.1016/s0021-9673(01)01052-4] [Citation(s) in RCA: 82] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
In this study 21 amino acid standards, samples of pure phloem sap and samples of pooled mesophyll cells were derivatized with fluorescein isothiocyanate, separated by capillary electrophoresis and detected with laser-induced fluorescence at 488 nm. Two different background electrolytes, a sodium borate buffer containing sodium dodecyl sulfate and a sodium borate buffer containing alpha-cyclodextrin, were used for the separation. Using the sodium dodecyl sulfate buffer, 14 amino acid standards could be separated, spiking identified 12 amino acids in pure phloem sap and 13 amino acids in pooled mesophyll cells. With the alpha-cyclodextrin containing background electrolyte, a resolution of 20 amino acid standards could be attained, 17 amino acids in pure phloem sap and 10 amino acids in mesophyll cells could be assigned. Leucine and isoleucine comigrated in both buffer systems. All separations were performed with a voltage of +20 kV and completed within 30 min. The detection limits obtained were in the fmol range for the sodium dodecyl sulfate and in the pmol range for the alpha-cyclodextrin background electrolyte. Compared to the one published capillary electrophoresis-based method for the determination of amino acids from few plant cells, the procedure described here allows very high sensitivity due to the use of laser-induced fluorescence detection and opens the possibility to dilute and measure pl samples with an fully automated, commercially available CE system.
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Affiliation(s)
- K Arlt
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Department Willmitzer, Golm, Germany
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Abstract
Analysis of organisms using techniques that provide high spatial and temporal resolution is of increasing interest in many disciplines of biomedical research. Although the examination of animal tissues has been the main focus to date, the recent development and improvement of methods for the sampling and handling of single cells and for their biochemical analysis now provide tools for investigating plant as well as animal cells.
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Affiliation(s)
- J Kehr
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14424, Potsdam, Germany.
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Lochmann H, Bazzanella A, Kropsch S, Bächmann K. Determination of tobacco alkaloids in single plant cells by capillary electrophoresis. J Chromatogr A 2001; 917:311-7. [PMID: 11403483 DOI: 10.1016/s0021-9673(01)00627-6] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
A new capillary electrophoresis system with direct UV detection for the analysis of the tobacco alkaloids nicotine, nornicotine and anabasine in plant microsamples was developed. An electrolyte containing a high concentration of citric acid to provide good buffer capacity at pH 3.6 was found to be most suitable in terms of sensitivity and separation efficiency. At this low pH the tobacco alkaloids are present in cationic form, showing high mobility and increased UV absorption. This system was used for the analysis of nicotine in single epidermal leaf cells of tobacco plants. Only vacuolar concentrations of nicotine were determined, as the vacuole occupies >95% of the entire volume in epidermal cells. The procedure of sample acquisition and preparation for nicotine analysis of vacuolar samples in the pl range is shown. The results indicate a gradient of nicotine from the leaf base to the tip with higher concentrations present in the cells at the tip. Compared to simultaneously measured bulk leaf samples containing all types of cells, tissues and compartments, the concentrations in epidermal cells are much higher. As nicotine is the major defence substance against insects in tobacco and the epidermis is the most exposed leaf tissue this result is physiologically plausible.
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Affiliation(s)
- H Lochmann
- Department of Chemistry, Institute of Inorganic Chemistry, Darmstadt University of Technology, Germany
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Abstract
Advances in the fundamental studies and methodology of capillary electrophoresis (CE) as applied to metal ion analysis over the last two years are reviewed, with the objective of providing the interested reader with a state-of-the-art picture of technique's potentialities in the area. In particular, novel strategies for separation selectivity control and CE system innovations designed to enhance the detection sensitivity are described. In addition, a brief overview of the primary metal analytes and samples for which the technique appears to be best suited is given. The current limitations of the technique regarding most of all the implementation for routine use are considered along with the approaches on how they could be addressed. Finally, some pointers as to the likely trends in the future research are discussed.
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Affiliation(s)
- A R Timerbaev
- Vernadsky Institute of Geochemistry and Analytical Chemistry, Russian Academy of Sciences, Moscow.
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26
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Govindaraju K, Lloyd DK. Analysis of small-scale biological compartments by capillary electrophoresis. JOURNAL OF CHROMATOGRAPHY. B, BIOMEDICAL SCIENCES AND APPLICATIONS 2000; 745:127-35. [PMID: 10997708 DOI: 10.1016/s0378-4347(00)00095-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Two characteristics of capillary electrophoresis make the technique attractive for the separation of the components of microscale compartments within living organisms: small sample volume requirements and direct compatibility with biofluids. Indeed, capillary electrophoresis has been used for analysis down to a sub-cellular level. There are also potentially many applications of capillary electrophoresis to biological compartments on a super-cellular scale, which are nevertheless so small that they make analysis by conventional separations techniques difficult or impractical. The analytical challenges in small-scale bioanalysis are first to develop a suitable method for collection of sample and its introduction into the separation capillary, and secondly, to achieve the required separation. Examples reviewed here will primarily focus on the analysis of tear fluid or airway surface liquid, cases in which the amount of sample that can be collected range from around 10 microl to around 100 nl.
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Affiliation(s)
- K Govindaraju
- Meakins-Christie Laboratories, McGill University, Montreal, Canada
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Mayrhofer K, Zemann AJ, Schnell E, Bonn GK. Capillary Electrophoresis and Contactless Conductivity Detection of Ions in Narrow Inner Diameter Capillaries. Anal Chem 1999; 71:3828-33. [DOI: 10.1021/ac990019o] [Citation(s) in RCA: 86] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Karl Mayrhofer
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens-University of Innsbruck, Innrain 52a, A-6020 Innsbruck, Austria
| | - Andreas J. Zemann
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens-University of Innsbruck, Innrain 52a, A-6020 Innsbruck, Austria
| | - Erhard Schnell
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens-University of Innsbruck, Innrain 52a, A-6020 Innsbruck, Austria
| | - Günther K. Bonn
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens-University of Innsbruck, Innrain 52a, A-6020 Innsbruck, Austria
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Abstract
▪ Abstract This review discusses how the pressure probe has evolved from an instrument for measuring cell turgor and other water relations parameters into a device for sampling the contents of individual higher plant cells in situ in the living plant. Together with a suite of microanalytical techniques it has permitted the mapping of water and solute relations at the resolution of single cells and has the potential to link quantitatively the traditionally separate areas of water relations and metabolism. The development of the probe is outlined and its modification to measure root pressure and xylem tension described. The deployment of the pressure probe to determine and map turgor, hydraulic conductivity, reflection coefficient, cell rheological properties, solute concentrations and enzyme activities at the resolution of single cells is discussed. The controversy surrounding the interpretation of results obtained with the xylem-pressure probe is included. Possible further developments of the probe and applications of single cell sampling are suggested.
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Affiliation(s)
- A. Deri Tomos
- Ysgol Gwyddorau Biolegol, Prifysgol Cymru Bangor, Bangor, Gwynedd LL57 2UW, United Kingdom; e-mail: , Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, United Kingdom; e-mail:
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Determination of ascorbic acid in isolated pea plant cells by capillary electrophoresis and amperometric detection. J Chromatogr A 1998. [DOI: 10.1016/s0021-9673(98)00768-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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